Citrus Sinensis ID: 000681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YQ1 | 1344 | Regulatory-associated pro | yes | no | 0.982 | 0.989 | 0.786 | 0.0 | |
| Q9LZW9 | 1336 | Regulatory-associated pro | no | no | 0.962 | 0.975 | 0.721 | 0.0 | |
| Q0IQN5 | 1359 | Regulatory-associated pro | yes | no | 0.978 | 0.974 | 0.693 | 0.0 | |
| C7J8E5 | 1218 | Regulatory-associated pro | yes | no | 0.884 | 0.983 | 0.710 | 0.0 | |
| Q8N122 | 1335 | Regulatory-associated pro | yes | no | 0.903 | 0.916 | 0.421 | 0.0 | |
| Q8K4Q0 | 1335 | Regulatory-associated pro | yes | no | 0.891 | 0.904 | 0.414 | 0.0 | |
| P87141 | 1313 | WD repeat-containing prot | yes | no | 0.508 | 0.524 | 0.474 | 0.0 | |
| Q55BR7 | 1509 | Protein raptor homolog OS | yes | no | 0.331 | 0.297 | 0.576 | 1e-156 | |
| P38873 | 1557 | Target of rapamycin compl | yes | no | 0.243 | 0.211 | 0.476 | 4e-96 | |
| Q0DJA3 | 437 | Double-stranded RNA-bindi | no | no | 0.059 | 0.185 | 0.817 | 9e-34 |
| >sp|Q93YQ1|RTOR1_ARATH Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2092 bits (5419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1361 (78%), Positives = 1181/1361 (86%), Gaps = 31/1361 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSCNSFDLAVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED 1073
CQ S ++SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE
Sbjct: 1006 CQHS------SISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEA 1059
Query: 1074 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1133
TLLN FDNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSI
Sbjct: 1060 TLLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSI 1119
Query: 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193
QGHKPG R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+A
Sbjct: 1120 QGHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSA 1178
Query: 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253
SQVHGGQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSAS
Sbjct: 1179 SQVHGGQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSAS 1237
Query: 1254 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1313
QAGDIQFLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG
Sbjct: 1238 QAGDIQFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGI 1297
Query: 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
IRY +PSFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1298 IRY-YPSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
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Probable component of the plant TOR kinase pathway that recruits substrates for TOR. Modulates plant cell growth and regulates the activity of ATPK1 kinase in response to osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2 OS=Arabidopsis thaliana GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1943 bits (5033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 995/1379 (72%), Positives = 1130/1379 (81%), Gaps = 76/1379 (5%)
Query: 1 MALGDLMASRFSQSAV--VSNHLNDD----CGSAHGD--VDLRRDSDTASSSYTNNASVT 52
MALGDLM SR SQS+V V+NHL DD SAH D V + ASSSY N
Sbjct: 1 MALGDLMVSRLSQSSVTVVTNHLYDDDDNCASSAHDDSRVSIIASPRVASSSYEN----- 55
Query: 53 TITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLC 112
+ TS+AYLPQT+VLC+LRH+ +AS P +WR K+RMKTGCVALV+C
Sbjct: 56 ---LSAATSMAYLPQTLVLCDLRHD--DASDIVQPP------RWRLKERMKTGCVALVMC 104
Query: 113 LNISVDPPDVIKISPCARMECWIDPFSM-APQKALETIGKNLSQQYERWQPRARYKVQLD 171
L+I+VDPPDVIKISPCAR+ECWIDPFSM P++ALE IG+NLS QYERW RARYKV+LD
Sbjct: 105 LHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQYERWLARARYKVELD 164
Query: 172 PTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDS 231
PT D+V+KLC +CR+YAK ERVLFHYNGHGVPKPT NGEIW++NK++TQYIPLP+S+LDS
Sbjct: 165 PTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDS 224
Query: 232 WLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPA 291
WLKTP+IYVFDCSAA +I+NAF E SG +DCILLAAC+ HETLPQS EFPA
Sbjct: 225 WLKTPTIYVFDCSAARVILNAFAE------GESSGPPKDCILLAACDVHETLPQSVEFPA 278
Query: 292 DVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDT 351
DVFTSCLTTPI +AL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDT
Sbjct: 279 DVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDT 338
Query: 352 IAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAW 411
IAWNVLP +LFQRLFRQDLLVASLFRNFLLAERIMRS NC+PISHPMLPPTHQHHMWDAW
Sbjct: 339 IAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAW 398
Query: 412 DMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 471
DMAAEICLSQLP DPN E+QPS FF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL
Sbjct: 399 DMAAEICLSQLPQFFLDPNTEFQPSSFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 458
Query: 472 SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILAL 531
SQCHR+RALVLLGRFLDMGPWAVDLALSVGI+P V+KLLQTTT ELRQILVFIWTKILAL
Sbjct: 459 SQCHRYRALVLLGRFLDMGPWAVDLALSVGIYPCVVKLLQTTTIELRQILVFIWTKILAL 518
Query: 532 DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHV 591
DKSCQVDLVKD GH YFIRFLDS +A+PEQRAMAAF+LAVIVDG++RGQE+C+EA LI V
Sbjct: 519 DKSCQVDLVKDRGHIYFIRFLDSSDAFPEQRAMAAFILAVIVDGYKRGQESCLEANLIAV 578
Query: 592 CLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP----AIYVPLLSE 647
CL HL+ + D EPLFLQWLCLCLGKLWED+ EAQ +GR A+A A + LL
Sbjct: 579 CLGHLEATQLCDPPPEPLFLQWLCLCLGKLWEDYLEAQIMGREANASENLIAGHTNLL-- 636
Query: 648 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPL 707
+VRA+AVF+LGTLLD+GFDS + GV DEE DDDE I +I II+SLL VVSDGSPL
Sbjct: 637 ---QVRAAAVFALGTLLDVGFDSGK-GV-CDEEFDDDENIVEDI-IIKSLLDVVSDGSPL 690
Query: 708 VRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGP 767
VR EVAVALARFAFGHKQHLKS+A +Y KPQ NSL SLPS+A +G+ + SS +G
Sbjct: 691 VRTEVAVALARFAFGHKQHLKSVADSYWKPQ-NSLRTSLPSMAKFHDSGTSIVASSDMGS 749
Query: 768 LTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMR 825
LTR ++ V R+GR+S+S +GLM GSPL+DDSS HSD GI++DGVSNGVV+ +
Sbjct: 750 LTRASPDSQPVAREGRISSSLQEPFSGLMQGSPLADDSSLHSDVGIIHDGVSNGVVH--Q 807
Query: 826 PKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDP 885
P+PLD+AIYSQ VLAM TLAKDPSPRIA+LGRRVLS+IGIEQ+V KP S G RPG+
Sbjct: 808 PRPLDNAIYSQSVLAMFTLAKDPSPRIASLGRRVLSVIGIEQIVAKPSKSNG---RPGEA 864
Query: 886 TTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLIN 945
+A+ TP LAGLVRSSSWFDM+ GHLPL FRTPPVSPP+ S+L G+RRVCSLE RPHL+
Sbjct: 865 ASASHTP-LAGLVRSSSWFDMHTGHLPLTFRTPPVSPPQTSYLTGLRRVCSLELRPHLLG 923
Query: 946 SPDSGLADPLLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREER 1004
SPDSGLADP+LG SG SERSLLP STIYNWSCGHFSKPLL AD EEI A+REE+
Sbjct: 924 SPDSGLADPILGVSG-----SERSLLPQSTIYNWSCGHFSKPLLGGADANEEIAAQREEK 978
Query: 1005 EKFALEHIAKCQRSCNSFDLAVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENE 1063
+KF+LEHIAKCQ S ++S L+N PIA WDT+FE GTKTALL PFSPIVVAADENE
Sbjct: 979 KKFSLEHIAKCQHS------SISGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENE 1032
Query: 1064 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--------GNIRIW 1115
RI++WNYEE TLLN FDN+DFPDKGIS LCLVNELD SLLLVASCN IRIW
Sbjct: 1033 RIRVWNYEEATLLNGFDNNDFPDKGISNLCLVNELDDSLLLVASCNVPTLSRASFAIRIW 1092
Query: 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1175
KDY K +QKLVT FSSIQG KPG N VVDWQQQSGYLY SGE SIM+WDL+KE Q
Sbjct: 1093 KDYATKGRQKLVTGFSSIQGQKPGASGLNAVVDWQQQSGYLYVSGESLSIMVWDLDKE-Q 1151
Query: 1176 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235
+V +P S CS++AL+ASQVHG QLAAGF DGSVRLYDVRTPD LVC+TRPH Q+VE+V
Sbjct: 1152 LVKSMPFESGCSVTALSASQVHGSQLAAGFADGSVRLYDVRTPDFLVCATRPH-QRVEKV 1210
Query: 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295
VG+SFQPGLDPAKIVSASQAGDIQFLD+R K+ YLTIDAHRGSL+AL VHRHAPIIASG
Sbjct: 1211 VGLSFQPGLDPAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLTALGVHRHAPIIASG 1270
Query: 1296 SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
SAKQLIKVFSL+GEQLG I+Y H SFM Q+IG V+CL FHPYQ+LLAAG+A + VS+++
Sbjct: 1271 SAKQLIKVFSLKGEQLGIIKY-HTSFMGQQIGPVSCLAFHPYQMLLAAGAAGSFVSLYT 1328
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Probable component of the plant TOR kinase pathway. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0IQN5|RTOR1_ORYSJ Regulatory-associated protein of TOR 1 OS=Oryza sativa subsp. japonica GN=RAPTOR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1874 bits (4855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 958/1381 (69%), Positives = 1110/1381 (80%), Gaps = 56/1381 (4%)
Query: 1 MALGDLMASRFSQSAVV------------SNHLNDDCGSAHGDVDLRRDSDTASSSYTNN 48
MALGDLMASR S+ +NHL DD D RRD
Sbjct: 1 MALGDLMASRLVHSSSSSAAPSAALPNHHTNHLVDDHLPVENGPDPRRDVPDEEPPPPPP 60
Query: 49 ASVTTITTTTTTSLAYLPQTVVLCELRHEAFE--ASTPSGPSDSGLVSKWRPKDRMKTGC 106
V A LPQ VVLCE RHE F+ A+ +GPS SG VSKWRPKDRMKTGC
Sbjct: 61 PQV-----------ALLPQVVVLCEQRHEGFDEAAAAAAGPSTSGPVSKWRPKDRMKTGC 109
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
VALVLCLNISVDPPDVIKISPCAR ECWIDPFSMAP KALETIGK L QYERWQP+ARY
Sbjct: 110 VALVLCLNISVDPPDVIKISPCARKECWIDPFSMAPPKALETIGKTLHSQYERWQPKARY 169
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
K+QLDPT++EVKKLCNTCR++A+ ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPI
Sbjct: 170 KLQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPI 229
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQS 286
+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW +S+ + S++DCILLAACEAH+TLPQS
Sbjct: 230 TDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDWSSSSSASSSKDCILLAACEAHQTLPQS 289
Query: 287 EEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFT 346
EFPADVFT+CLTTPI MAL WFC RSLL +S++++LID+IPGRQ DR+TLLGELNWIFT
Sbjct: 290 AEFPADVFTACLTTPIKMALHWFCNRSLLRDSMEHNLIDQIPGRQNDRKTLLGELNWIFT 349
Query: 347 AVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHH 406
A+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPIS+P+LPPTHQHH
Sbjct: 350 AITDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISYPLLPPTHQHH 409
Query: 407 MWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIV 466
MWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF+EQLTAFEVWLDHGSE KKPPEQLPIV
Sbjct: 410 MWDAWDMAAEICLSKLPQLIADPNAEFQPSPFFTEQLTAFEVWLDHGSEDKKPPEQLPIV 469
Query: 467 LQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWT 526
LQVLLSQ HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT+ ELRQILVFIWT
Sbjct: 470 LQVLLSQSHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTSAMELRQILVFIWT 529
Query: 527 KILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586
KIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYPEQRAMAAFVLAVIVDGHR GQEAC A
Sbjct: 530 KILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYPEQRAMAAFVLAVIVDGHRIGQEACANA 589
Query: 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 646
GLI VCL+HLQ PNDAQTEPL LQWLCLCLGKLWEDF EAQ +G +++AP I + LLS
Sbjct: 590 GLIDVCLRHLQPENPNDAQTEPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLS 649
Query: 647 EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSP 706
EPQPEVRASAVF+LG L+DIG S + ++ DEK+RAEI+++RSLL + SDGSP
Sbjct: 650 EPQPEVRASAVFALGNLVDIGSPSLNGADDDSDD---DEKVRAEINVVRSLLQISSDGSP 706
Query: 707 LVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTG---------S 757
LVR+EVAVAL RFA GH +H+KS+AA Y KPQ+NSLL SLPSLA+I ++
Sbjct: 707 LVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQTNSLLKSLPSLANINSSNVYSPSSLIQG 766
Query: 758 GSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGI-LND 814
S ++S IGP+ RVG N A RDGR+STSSP+A +MHGSP SDDSSQHSDSGI L +
Sbjct: 767 SSGLASHIGPVLRVGSDNSATARDGRISTSSPIATNSIMHGSPQSDDSSQHSDSGILLRE 826
Query: 815 GVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVM 874
SNG +N+ R +P+D+ IYSQ + MC +AKDP PRIA++G+R LS+IG+EQV +
Sbjct: 827 NASNGGLNYSRSRPIDNGIYSQFIATMCNVAKDPYPRIASIGKRALSLIGVEQVSMRNSR 886
Query: 875 SMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRV 934
+ PG+ T+ P S G+ RSSSWFDMN G+ + FRTPPVSPP+ +L G+RRV
Sbjct: 887 LSNGGAHPGE--TSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPPQHDYLTGLRRV 944
Query: 935 CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDT 994
CS+EFRPH++NSPD GLADPLL S + +LP S IY WSCGHFS+PLLT +DD
Sbjct: 945 CSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGLYILPQSLIYRWSCGHFSRPLLTGSDDN 1003
Query: 995 EEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPFSP 1054
EE ARREERE+ A++ IAKCQRS K+ + IA WDTRFE GTK +LL PFSP
Sbjct: 1004 EEANARREERERIAMDCIAKCQRSS-------CKMTSQIASWDTRFELGTKASLLLPFSP 1056
Query: 1055 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114
IVVAADENE+I++WNY++ +N+F+NH D+G+SKL L+NELD SLLLV S +GN+RI
Sbjct: 1057 IVVAADENEQIRVWNYDDALPVNTFENHKLSDRGLSKLLLINELDDSLLLVGSSDGNVRI 1116
Query: 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1174
W++Y QK QKLVTAFSS+QG++ R ++V DWQQQSGYLYASG++SSI++WDL+KEQ
Sbjct: 1117 WRNYTQKGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQSGYLYASGDMSSILVWDLDKEQ 1174
Query: 1175 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234
VN I S++D ISAL+ASQV GQ AAGF+D SVR++DVRTPD LV + RPH + E+
Sbjct: 1175 --VNTIQSTADSGISALSASQVRCGQFAAGFLDASVRIFDVRTPDRLVYTARPHAPRSEK 1232
Query: 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294
VVGI FQPG DP KIVSASQAGDIQFLD+R + YLTI+AHRGSL+ALAVHRHAP+IAS
Sbjct: 1233 VVGIGFQPGFDPYKIVSASQAGDIQFLDVRRASEPYLTIEAHRGSLTALAVHRHAPVIAS 1292
Query: 1295 GSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-ACVSIH 1353
GSAKQ+IKVFSLEGEQL IRY PSFM Q+IGSVNCL+FH Y+ LLAAG+ D A VSI+
Sbjct: 1293 GSAKQMIKVFSLEGEQLTIIRY-QPSFMGQRIGSVNCLSFHRYKSLLAAGAGDNALVSIY 1351
Query: 1354 S 1354
+
Sbjct: 1352 A 1352
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|C7J8E5|RTOR2_ORYSJ Regulatory-associated protein of TOR 2 OS=Oryza sativa subsp. japonica GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1228 (71%), Positives = 1020/1228 (83%), Gaps = 30/1228 (2%)
Query: 140 MAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNG 199
MAP KALETIGK L QYERWQP+ARYK+QLDPT++EVKKLCNTCR++A+ ERVLFHYNG
Sbjct: 1 MAPPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCRKFARTERVLFHYNG 60
Query: 200 HGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW 259
HGVPKPTANGEIW+FNKSYTQYIPLPI+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW
Sbjct: 61 HGVPKPTANGEIWVFNKSYTQYIPLPITDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDW 120
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
+S+ + S++DCILLAACEAH+TLPQS EFPADVFT+CLTTPI MAL WFC RSLL +S+
Sbjct: 121 SSSSSASSSKDCILLAACEAHQTLPQSAEFPADVFTACLTTPIKMALHWFCNRSLLRDSM 180
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
+++LID+IPGRQ DR+TLLGELNWIFTA+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNF
Sbjct: 181 EHNLIDQIPGRQNDRKTLLGELNWIFTAITDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 240
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANCSPIS+P+LPPTHQHHMWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF
Sbjct: 241 LLAERIMRSANCSPISYPLLPPTHQHHMWDAWDMAAEICLSKLPQLIADPNAEFQPSPFF 300
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWLDHGSE KKPPEQLPIVLQVLLSQ HRFRALVLLGRFLDMGPWAVDLALS
Sbjct: 301 TEQLTAFEVWLDHGSEDKKPPEQLPIVLQVLLSQSHRFRALVLLGRFLDMGPWAVDLALS 360
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQT+ ELRQILVFIWTKIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYP
Sbjct: 361 VGIFPYVLKLLQTSAMELRQILVFIWTKILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYP 420
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
EQRAMAAFVLAVIVDGHR GQEAC AGLI+VCL+HLQ PNDAQTEPL LQWLCLCLG
Sbjct: 421 EQRAMAAFVLAVIVDGHRVGQEACANAGLIYVCLRHLQPENPNDAQTEPLLLQWLCLCLG 480
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDE 679
KLWEDF EAQ +G +++AP I + LLSEPQPEVRASAVF+LG L+DIG S + +
Sbjct: 481 KLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLVDIGSPSLNGADDDSD 540
Query: 680 ECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQS 739
+ DEK+RAEI+++RSLL + SDGSPLVR+EVAVAL RFA GH +H+KS+AA Y KPQ+
Sbjct: 541 D---DEKVRAEINVVRSLLQISSDGSPLVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQT 597
Query: 740 NSLLGSLPSLAHIKTTG---------SGSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPL 788
NSLL SLPSLA+I ++ S ++S IGP+ RVG N A RDGR+STSSP+
Sbjct: 598 NSLLKSLPSLANINSSNVYSPSSLIQGSSGLASHIGPVLRVGSDNSATARDGRISTSSPI 657
Query: 789 ANAGLMHGSPLSDDSSQHSDSGI-LNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKD 847
A +MHGSP SDDSSQHSDSGI L + SNG +N+ R +P+D+ IYSQ + MC +AKD
Sbjct: 658 ATNSIMHGSPQSDDSSQHSDSGILLRENASNGGLNYSRSRPIDNGIYSQFIATMCNVAKD 717
Query: 848 PSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMN 907
P PRIA++G+R LS+IG+EQV + + PG+ T+ P S G+ RSSSWFDMN
Sbjct: 718 PYPRIASIGKRALSLIGVEQVSMRNSRLSNGGAHPGE--TSVPPSSNFGMARSSSWFDMN 775
Query: 908 GGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSER 967
G+ + FRTPPVSPP+ +L G+RRVCS+EFRPH++NSPD GLADPLL S +
Sbjct: 776 SGNFSMAFRTPPVSPPQHDYLTGLRRVCSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGL 834
Query: 968 SLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVS 1027
+LP S IY WSCGHFS+PLLT +DD EE ARREERE+ A++ IAKCQRS
Sbjct: 835 DILPQSLIYRWSCGHFSRPLLTGSDDNEEANARREERERIAMDCIAKCQRSS-------C 887
Query: 1028 KLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK 1087
K+ + IA WDTRFE GTK +LL PFSPIVVAADENE+I++WNY++ +N+F+NH D+
Sbjct: 888 KMTSQIASWDTRFELGTKASLLLPFSPIVVAADENEQIRVWNYDDALPVNTFENHKLSDR 947
Query: 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1147
G+SKL L+NELD SLLLV S +GN+RIW++Y QK QKLVTAFSS+QG++ R ++V
Sbjct: 948 GLSKLLLINELDDSLLLVGSSDGNVRIWRNYTQKGGQKLVTAFSSVQGYRSAGR--SIVF 1005
Query: 1148 DWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD 1207
DWQQQSGYLYASG++SSI++WDL+KE Q+VN I S++D ISAL+ASQV GQ AAGF+D
Sbjct: 1006 DWQQQSGYLYASGDMSSILVWDLDKE-QLVNTIQSTADSGISALSASQVRCGQFAAGFLD 1064
Query: 1208 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1267
SVR++DVRTPD LV + RPH + E+VVGI FQPG DP KIVSASQAGDIQFLD+R
Sbjct: 1065 ASVRIFDVRTPDRLVYTARPHAPRSEKVVGIGFQPGFDPYKIVSASQAGDIQFLDVRRAS 1124
Query: 1268 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIG 1327
+ YLTI+AHRGSL ALAVHRHAP+IASGSAKQ+IKVFSLEGEQL IRY PSFM Q+IG
Sbjct: 1125 EPYLTIEAHRGSLMALAVHRHAPVIASGSAKQMIKVFSLEGEQLTIIRY-QPSFMGQRIG 1183
Query: 1328 SVNCLTFHPYQVLLAAGSAD-ACVSIHS 1354
SVNCL+FH Y+ LLAAG+ D A VSI++
Sbjct: 1184 SVNCLSFHRYKSLLAAGAGDNALVSIYA 1211
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8N122|RPTOR_HUMAN Regulatory-associated protein of mTOR OS=Homo sapiens GN=RPTOR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/1325 (42%), Positives = 765/1325 (57%), Gaps = 102/1325 (7%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +VSDGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLVSDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-------RVGNEAVVRDGRVSTSS 786
+ + + N +LPS A TT GS+ + P T GN V R S +
Sbjct: 685 FIEEEKNY---ALPSPA---TTEGGSLTPVRDSPCTPRLRSVSSYGNIRAVATAR-SLNK 737
Query: 787 PLANAGLMHGS----------------PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLD 830
L N L S S S ++ IL+ + + L+
Sbjct: 738 SLQNLSLTEESGGAVAFSPGNLSTSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLN 797
Query: 831 S-------AIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 883
S ++Y+Q + LA DP P ++ + +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPEVSDVAMKVLNSIAYKATVNARPQRVLDTSSLT 857
Query: 884 DPTTAAPTPSLAGLVRSSS---WFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFR 940
A+PT + ++ + L PVS S PG ++
Sbjct: 858 QSAPASPTNKGVHIHQAGGSPPASSTSSSSLTNDVAKQPVSRDLPSGRPGTTGPAGAQYT 917
Query: 941 PH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTA 990
PH P+ D +G S +S + +WS +F++P++
Sbjct: 918 PHSHQFPRTRKMFDKGPEQTADDADDAAGHKSFISATV---QTGFCDWSARYFAQPVMKI 974
Query: 991 ADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQ 1050
++ + R+ERE L + +++ +++L++ I R
Sbjct: 975 PEEHDLESQIRKEREWRFLRNSRVRRQAQQVIQKGITRLDDQIFL--NRNPGVPSVVKFH 1032
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110
PF+P + AD++ I W++E+ L+ F N + ++ + +N D SLLL A+ +G
Sbjct: 1033 PFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDG 1091
Query: 1111 NIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169
IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G L +SG+V + +WD
Sbjct: 1092 AIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGLLMSSGDVRIVRIWD 1151
Query: 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1229
++E + V IP+ +D +++L+ H + AG DGS+R+YD R + C +
Sbjct: 1152 TDREMK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDRRMA-LSECRVMTYR 1208
Query: 1230 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289
+ VV S Q D IVS S GD++ D R ++ + +G L+AL +H A
Sbjct: 1209 EHTAWVVKASLQKRPD-GHIVSVSVNGDVRIFDPR-MPESVNVLQIVKG-LTALDIHPQA 1265
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349
+IA GS Q +++ GE + I+Y+ FM Q++G+++CL FHP+ LA GS D
Sbjct: 1266 DLIACGSVNQFTAIYNSSGELINNIKYYD-GFMGQRVGAISCLAFHPHWPHLAVGSNDYY 1324
Query: 1350 VSIHS 1354
+S++S
Sbjct: 1325 ISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Homo sapiens (taxid: 9606) |
| >sp|Q8K4Q0|RPTOR_MOUSE Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/1341 (41%), Positives = 766/1341 (57%), Gaps = 134/1341 (9%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 256
W+FNK+YTQYIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 257 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 314
H S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 315 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 373
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 433
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 434 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 493
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 494 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L + PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL-------SDPHPLLRQW 576
Query: 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 733
E D I ++++ L +++DGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 734 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-RVGNEAVVRDGRVSTSSPLANAG 792
+ + + N LPS A T GS+ + P T R+ + + + R T++ N
Sbjct: 685 FMEEEKNY---PLPSPA---ATEGGSLTPVRDSPCTPRLRSVSSYGNIRAVTTARNLNKS 738
Query: 793 LMHGSPLSDDSSQHSDSGILNDG------------------VSNGVVNHMRPKPLDSA-- 832
L + S L+++S N +S ++ MR SA
Sbjct: 739 LQNLS-LTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALN 797
Query: 833 ---------IYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 883
+Y+Q + LA DP P ++ L +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPDVSDLAMKVLNSIAYKATVNARPQRILDTSSLT 857
Query: 884 DPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL--------------- 928
A+PT G H+ +PP S L
Sbjct: 858 QSAPASPT--------------NKGMHMHQVGGSPPASSTSSCSLTNDVAKQTVSRDLPS 903
Query: 929 --PGMRRVCSLEFRPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIY 976
PG ++ PH PD D +G S + +
Sbjct: 904 SRPGTAGPTGAQYTPHSHQFPRTRKMFDKGPDQTTDDADDAAGHKSFICASM---QTGFC 960
Query: 977 NWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACW 1036
+WS +F++ ++ ++ + R+ERE L + +++ +++L++ I +
Sbjct: 961 DWSARYFAQAVMKIPEEHDLESQIRKEREWRFLRNTRVRKQAQQVIQKGITRLDDQI--F 1018
Query: 1037 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN 1096
R PF+P + AD++ I W++E+ L+ F N + ++ + +N
Sbjct: 1019 LNRNPGVPSVVKFHPFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLN 1077
Query: 1097 ELDVSLLLVASCNGNIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155
D SLLL A+ +G IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G
Sbjct: 1078 GQDCSLLLTATDDGAIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGL 1137
Query: 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215
L +SG+V + +WD ++E + V IP+ +D +++L+ H + AG DGS+R+YD
Sbjct: 1138 LMSSGDVRIVRIWDTDRETK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDR 1195
Query: 1216 RTP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273
R + V + R HT V + G IVS S GD++F D R ++ +
Sbjct: 1196 RMALSECRVMTYREHTAWVVKAYLQKHPEG----HIVSVSVNGDVRFFDPR-MPESVNVM 1250
Query: 1274 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1333
+G L+AL +H A +IA GS Q +++ GE + I+Y+ FM Q++G+++CL
Sbjct: 1251 QIVKG-LTALDIHPQANLIACGSMNQFTAIYNGNGELINNIKYYD-GFMGQRVGAISCLA 1308
Query: 1334 FHPYQVLLAAGSADACVSIHS 1354
FHP+ LA GS D +S++S
Sbjct: 1309 FHPHWPHLAVGSNDYYISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Mus musculus (taxid: 10090) |
| >sp|P87141|MIP1_SCHPO WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/767 (47%), Positives = 474/767 (61%), Gaps = 78/767 (10%)
Query: 21 LNDDCGSAHGDVDLRRD------SDTASSSYTNNASVTTITTTTTTS------------- 61
+ND G RR ++T S YT N+++ T T S
Sbjct: 1 MNDRISEVSGSSRARRSVLSYGTTETGSDRYTENSNIATENGVDTASSMIDGIQSGFPQP 60
Query: 62 -------------LAYLPQTVVL--CELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGC 106
+ L Q + + RH + + P+++ + WR ++R+KT
Sbjct: 61 RHGFEEEYNNAEYINMLEQVFYMYYTDKRHRGVISKKNAEPTET--IHDWRMRERLKTVS 118
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
AL++CLNI VDPPDVIK +P A+ ECWIDPFS+ KALE IGKNL QQYE R RY
Sbjct: 119 AALLVCLNIGVDPPDVIKPNPAAKYECWIDPFSLPASKALEAIGKNLQQQYETLSMRTRY 178
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226
+ LDP ++EVKKLC RR AK ER+LFHYNGHGVP PTA+GEIW+FNK+YTQYIP+ +
Sbjct: 179 RHYLDPAIEEVKKLCIGQRRNAKEERILFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSL 238
Query: 227 SDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHDWGASNYSG---------STRDCILL 274
DL SWL P IYV+DCSAAG I+ N F E D A + S CI L
Sbjct: 239 YDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQNPNVLAMPSHTSCIQL 298
Query: 275 AACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDR 334
AAC ETLP + + PAD+FTSCLT+PI +++RW+ ++ L+ +++ KIPGR DR
Sbjct: 299 AACGPKETLPMNPDLPADLFTSCLTSPIEISVRWYVLQNPFPNKLNLNMLLKIPGRLQDR 358
Query: 335 RTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPI 394
RT LGELNWIFTA+TDTIAWNV P LF+RLFRQDL+VA+LFRNFLLAERIM +C P
Sbjct: 359 RTPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQ 418
Query: 395 SHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA----EYQPSPFFSEQLTAFEVWL 450
S P LPPTH H MW++WD+A + CLSQLP ++ + EY+ S FFSEQLTAFEVWL
Sbjct: 419 SSPELPPTHDHPMWNSWDLAIDNCLSQLPDMLDAESKGIAYEYKHSTFFSEQLTAFEVWL 478
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
G +KPP+QLP+VLQVLLSQ HR RAL+LL +FLD+G WAVDLALS+GIFPYVLKLL
Sbjct: 479 SQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSIGIFPYVLKLL 538
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD-SMEAYP-----EQRAM 564
Q+ EL+ +LVFIW +ILA+D SCQ DL+KD G+ YF++ L+ + +P E RAM
Sbjct: 539 QSPAIELKPVLVFIWARILAVDDSCQADLLKDNGYGYFVQILNPNSSIFPSSNISEHRAM 598
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+L+V G +GQ AC+ ++ CL HL + L QW CLC+ +LWE+
Sbjct: 599 CAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP-------DSLLRQWACLCISQLWEN 651
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 684
++EA+ G R +A ++ + PEVRAS + + T L GF +
Sbjct: 652 YSEAKWSGTRDNAHVKLAEIIVDSVPEVRASVLTAFTTFL--GFPE-----------KTE 698
Query: 685 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIA 731
E + E I + L +SD SPLVR E+ + L+ F +K+ L +A
Sbjct: 699 EVVAVETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVA 745
|
Binds to and facilitates the functioning of the meiotic regulator mei2. May also be involved in conjugation by interacting with ste11. Essential for cell growth. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q55BR7|RPTOR_DICDI Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 345/470 (73%), Gaps = 21/470 (4%)
Query: 269 RDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIP 328
RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L + ++DKIP
Sbjct: 359 RDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGITADMLDKIP 417
Query: 329 GRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRS 388
G + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+LLAERIMRS
Sbjct: 418 GNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNYLLAERIMRS 477
Query: 389 ANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEV 448
ANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF+EQLTAFEV
Sbjct: 478 ANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFFTEQLTAFEV 537
Query: 449 WLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLK 508
WL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL VGIFPYVLK
Sbjct: 538 WLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALCVGIFPYVLK 597
Query: 509 LLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFV 568
LLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S + +QR M+AFV
Sbjct: 598 LLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPADQRTMSAFV 657
Query: 569 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628
L+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+ K+WE+F EA
Sbjct: 658 LSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMAKMWENFEEA 710
Query: 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIR 688
+ + +A LL++ PEVRASAV +LG L+ G EG E ++
Sbjct: 711 KWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI--------GGAEGSE-----QRTN 757
Query: 689 AEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQ 738
E+++ +L + +D SP+VR E+ ++L+R ++ + +A ++ +
Sbjct: 758 IELNLALTLAVITADCSPMVRKELVISLSRIVSSYESNFVQVAQEIAQEE 807
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38873|KOG1_YEAST Target of rapamycin complex 1 subunit KOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KOG1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 175/367 (47%), Positives = 235/367 (64%), Gaps = 37/367 (10%)
Query: 93 VSKWR-PKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMA-PQKALETIG 150
++ W+ KDR KT AL+LCLN+ VDPPDV+K PCAR+E W+DP + +KA+E IG
Sbjct: 70 ITDWKIMKDRQKTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIG 129
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
KNL QYE R RYK LDP V++VK+ CN+ RR +K +R+LFHYNGHGVPKPT +GE
Sbjct: 130 KNLQAQYETLSLRTRYKQSLDPCVEDVKRFCNSLRRTSKEDRILFHYNGHGVPKPTKSGE 189
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL------------HD 258
IW+FN+ YTQYIP+ + DL +WL P I+V+DC++A I+ F + HD
Sbjct: 190 IWVFNRGYTQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRIKDDEEGNHD 249
Query: 259 WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHES 318
A + + + +DC LA+C + E L S E PAD+F+ CLT PI +++R F +S L +S
Sbjct: 250 VAAPSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIFLMQSPLKDS 309
Query: 319 LDYSLID----------------------KIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
+ IPG +DRRT LGELNWIFTA+TDTIAW
Sbjct: 310 KYKIFFENSTSNQPFGDSKNSFKSKIPNVNIPGMLSDRRTPLGELNWIFTAITDTIAWTS 369
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPT-HQHHMWDAWDMAA 415
LP LF++LFR DL++A+LFRNFLLA+RIM NC P+S P LP + H MW +WD+A
Sbjct: 370 LPRPLFKKLFRHDLMIAALFRNFLLAKRIMPWYNCHPVSDPELPDSITTHPMWKSWDLAM 429
Query: 416 EICLSQL 422
+ L+++
Sbjct: 430 DEVLTKI 436
|
Component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. KOG1 may have a role in binding and recruiting substrates of TORC1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
Query: 97 RPKDR-MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155
+PK+ MKTGCVALVLCLNISVDPPDVIKISPC R ECWIDPFSMA KALETIGK L
Sbjct: 356 QPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHS 415
Query: 156 QYERWQPRARYKVQLDPTVDEV 177
QYERWQP+ARYK+QLDPT++EV
Sbjct: 416 QYERWQPKARYKLQLDPTLEEV 437
|
Binds double-stranded RNA. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | ||||||
| 359481183 | 1363 | PREDICTED: regulatory-associated protein | 0.985 | 0.978 | 0.835 | 0.0 | |
| 224140567 | 1366 | predicted protein [Populus trichocarpa] | 0.986 | 0.978 | 0.813 | 0.0 | |
| 359481185 | 1370 | PREDICTED: regulatory-associated protein | 0.984 | 0.972 | 0.823 | 0.0 | |
| 224091088 | 1377 | predicted protein [Populus trichocarpa] | 0.988 | 0.971 | 0.819 | 0.0 | |
| 449464424 | 1362 | PREDICTED: regulatory-associated protein | 0.984 | 0.978 | 0.827 | 0.0 | |
| 356530199 | 1373 | PREDICTED: regulatory-associated protein | 0.977 | 0.963 | 0.806 | 0.0 | |
| 356566757 | 1365 | PREDICTED: regulatory-associated protein | 0.977 | 0.969 | 0.804 | 0.0 | |
| 357506523 | 1430 | Regulatory-associated protein of mTOR [M | 0.978 | 0.926 | 0.75 | 0.0 | |
| 18398267 | 1344 | regulatory associated protein of mTOR [A | 0.982 | 0.989 | 0.786 | 0.0 | |
| 297833636 | 1344 | RAPTOR1B [Arabidopsis lyrata subsp. lyra | 0.981 | 0.988 | 0.787 | 0.0 |
| >gi|359481183|ref|XP_003632587.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 1 [Vitis vinifera] gi|297735579|emb|CBI18073.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2275 bits (5896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1150/1376 (83%), Positives = 1228/1376 (89%), Gaps = 42/1376 (3%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVP---LLSEPQPE 651
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APAIY P LLSEPQPE
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAIYAPLLSLLSEPQPE 650
Query: 652 VRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAE 711
VRASAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAE
Sbjct: 651 VRASAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAE 710
Query: 712 VAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSI 760
VAVAL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSI
Sbjct: 711 VAVALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSI 769
Query: 761 VSSQIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSN 818
V +GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSN
Sbjct: 770 VPP-VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSN 828
Query: 819 GVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGN 878
G+VNH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G
Sbjct: 829 GIVNHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGT 888
Query: 879 TSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLE 938
+ RP +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLE
Sbjct: 889 SVRPAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLE 948
Query: 939 FRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL 998
FRPH +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEIL
Sbjct: 949 FRPHQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEIL 1008
Query: 999 ARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVA 1058
ARREEREKFAL+HI+KCQ S +VSKLNN IA WDTRFE G KTALLQPFSPIVVA
Sbjct: 1009 ARREEREKFALDHISKCQHS------SVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVA 1062
Query: 1059 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118
ADENERI+IWNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASC+GN+RIWKDY
Sbjct: 1063 ADENERIRIWNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCDGNVRIWKDY 1122
Query: 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1178
+ +QKLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+V
Sbjct: 1123 TLRGQQKLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QLVY 1181
Query: 1179 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238
IPS SD SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVVGI
Sbjct: 1182 SIPSLSDSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVVGI 1241
Query: 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1298
FQPGLDPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP+IASGSAK
Sbjct: 1242 GFQPGLDPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAPLIASGSAK 1301
Query: 1299 QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
Q+IKVF+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA VSI++
Sbjct: 1302 QIIKVFNLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALVSIYA 1356
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140567|ref|XP_002323654.1| predicted protein [Populus trichocarpa] gi|222868284|gb|EEF05415.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2251 bits (5832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1120/1377 (81%), Positives = 1208/1377 (87%), Gaps = 41/1377 (2%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGDVDLRRDSDTASSS-YTNNASVTTITT 56
MALGDL ASR S A++SNH + D RDSD AS+S Y + T T
Sbjct: 1 MALGDLTASRLSSQSSVALISNH--------YDDFPSNRDSDIASTSNYGGGNATTGSTA 52
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
TTTS+AYLPQ+ VL ELRHEAFEAS P+GPSDSG VSKWRPKDRMKTG VALVLCLNIS
Sbjct: 53 ATTTSMAYLPQSAVLSELRHEAFEASVPTGPSDSGPVSKWRPKDRMKTGYVALVLCLNIS 112
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCARMECWIDPFSMAPQKALETIGK+LS QYERWQP+ARYK+QLDPTVDE
Sbjct: 113 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSLSIQYERWQPKARYKIQLDPTVDE 172
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
VKKLCNTCR++AK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL+TP
Sbjct: 173 VKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLRTP 232
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAAGMIVNAF+ELHDW AS +GS +CILLAACEAHETLPQS+EFPADVFTS
Sbjct: 233 SIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCILLAACEAHETLPQSDEFPADVFTS 292
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 293 CLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 352
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 353 LPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLPS+V DPN+E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ HR
Sbjct: 413 ICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQSHR 472
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ
Sbjct: 473 FRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
VDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL+HL
Sbjct: 533 VDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLRHL 592
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+GS+P DAQTEPLFLQWLCLCLGKLWEDFTEAQ +G +ADAPAIY PLL PQPEVRASA
Sbjct: 593 RGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGLQADAPAIYAPLLLVPQPEVRASA 652
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
F+L TLLD+G D CRDGV GD+ECDDDEK+RAE+SIIRSLL+VVSDGSPLVRAEVAVAL
Sbjct: 653 AFALATLLDVGGDVCRDGVHGDDECDDDEKVRAEVSIIRSLLSVVSDGSPLVRAEVAVAL 712
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG-----------SIVSSQI 765
ARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSL HIK TGSG SIVSSQI
Sbjct: 713 ARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIKATGSGYINPNQHVPHASIVSSQI 772
Query: 766 GPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNH 823
GPLTRVG N +VVRDGRVSTSSPL AG+MHGSPLSDDSSQHS+SGILN VSNG VNH
Sbjct: 773 GPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLSDDSSQHSNSGILNGIVSNGAVNH 832
Query: 824 MRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTS--R 881
RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGR VLSIIGIEQVVTK V S G++ R
Sbjct: 833 SRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVLSIIGIEQVVTKSVNSAGSSGRPR 892
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
PGDP T++P PS+AG+ RSSSWFDMN GHLP FRTPPVSPPR S+L GMRRVCSL+FRP
Sbjct: 893 PGDPKTSSPYPSVAGMTRSSSWFDMNAGHLP--FRTPPVSPPRPSYLTGMRRVCSLDFRP 950
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
HL+N PDSGLADPLLGS S +ERSLLP STIY WSCGHFSKPLLT DDTEEIL RR
Sbjct: 951 HLMNFPDSGLADPLLGSVSSSGGTERSLLPQSTIYKWSCGHFSKPLLTVPDDTEEILVRR 1010
Query: 1002 EEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADE 1061
EEREK+ALEHIA CQ S S L N IA DT+FE GTKTALLQPFSPIVVAADE
Sbjct: 1011 EEREKYALEHIATCQHSSG------SNLKNRIANLDTKFETGTKTALLQPFSPIVVAADE 1064
Query: 1062 NERI----KIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1117
NERI ++WNYEE LLN FDNHDFPDKGISKLCLVNELD SLLLVASC+GNIRIWKD
Sbjct: 1065 NERIRQASRVWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKD 1124
Query: 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1177
Y KQKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q++
Sbjct: 1125 YTVYGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLI 1183
Query: 1178 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237
+ IPSSSDCS+SA++AS+VHGGQ AAGFVDGSV+LYDVR +MLVC++RPHT+ V RVVG
Sbjct: 1184 HSIPSSSDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRPHTENVVRVVG 1243
Query: 1238 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1297
I FQPGLDP KIVSASQAGD+QFLD+RN + YLTI AHRGSL+AL+VHRHAPIIASGSA
Sbjct: 1244 IGFQPGLDPGKIVSASQAGDMQFLDMRNLMNPYLTIKAHRGSLTALSVHRHAPIIASGSA 1303
Query: 1298 KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
KQ+IK+FSL GEQL +I YH + M QKI V+CLTFHPYQVLLAAG+ DA SI++
Sbjct: 1304 KQIIKLFSLNGEQLDSITYHL-TIMGQKISPVSCLTFHPYQVLLAAGATDALFSIYA 1359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481185|ref|XP_003632588.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2246 bits (5821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1140/1384 (82%), Positives = 1221/1384 (88%), Gaps = 51/1384 (3%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 234
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 235 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 294
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 295 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 354
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 355 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 414
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 415 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 474
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APA ++ + +VRA
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAFFIS-NNAILFQVRA 649
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAV 714
SAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAEVAV
Sbjct: 650 SAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAEVAV 709
Query: 715 ALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVSS 763
AL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSIV
Sbjct: 710 ALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSIVPP 768
Query: 764 QIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVV 821
+GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSNG+V
Sbjct: 769 -VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSNGIV 827
Query: 822 NHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSR 881
NH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G + R
Sbjct: 828 NHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGTSVR 887
Query: 882 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 941
P +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLEFRP
Sbjct: 888 PAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLEFRP 947
Query: 942 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 1001
H +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEILARR
Sbjct: 948 HQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEILARR 1007
Query: 1002 EEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADE 1061
EEREKFAL+HI+KCQ S +VSKLNN IA WDTRFE G KTALLQPFSPIVVAADE
Sbjct: 1008 EEREKFALDHISKCQHS------SVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADE 1061
Query: 1062 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----------G 1110
NERI+IWNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASCN G
Sbjct: 1062 NERIRIWNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCNFFLLSLHYVGDG 1121
Query: 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170
N+RIWKDY + +QKLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL
Sbjct: 1122 NVRIWKDYTLRGQQKLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDL 1181
Query: 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ 1230
+KE Q+V IPS SD SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ
Sbjct: 1182 DKE-QLVYSIPSLSDSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQ 1240
Query: 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290
+VERVVGI FQPGLDPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP
Sbjct: 1241 RVERVVGIGFQPGLDPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAP 1300
Query: 1291 IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350
+IASGSAKQ+IKVF+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA V
Sbjct: 1301 LIASGSAKQIIKVFNLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALV 1359
Query: 1351 SIHS 1354
SI++
Sbjct: 1360 SIYA 1363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091088|ref|XP_002309174.1| predicted protein [Populus trichocarpa] gi|222855150|gb|EEE92697.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2244 bits (5814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1136/1386 (81%), Positives = 1221/1386 (88%), Gaps = 48/1386 (3%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGD--VDL--------------RRDSDTA 41
MALGDLMASRFS A VSNH D S+H D +D+ R +
Sbjct: 1 MALGDLMASRFSSQSPVAFVSNHY-DHYPSSHEDDAIDVARRDDNNNSNNNRDRDSDTAS 59
Query: 42 SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDR 101
+S+Y + + T TTTTS AYLPQTVVLCELRHEAFEAS P+GPSDSGLVSKWRPKDR
Sbjct: 60 TSNYGGGNATASTTATTTTSTAYLPQTVVLCELRHEAFEASVPTGPSDSGLVSKWRPKDR 119
Query: 102 MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQ 161
MKTG VALVLCLNISVDPPDVIKISPCARMECW DP SMAPQKALETIGKNLS QYERWQ
Sbjct: 120 MKTGYVALVLCLNISVDPPDVIKISPCARMECWTDPLSMAPQKALETIGKNLSIQYERWQ 179
Query: 162 PRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 221
P+ARYKVQLDPTVDEVKKLCNTCR+YAK ERVLFHYNGHGVPKPTANGEIWLFNKSYTQY
Sbjct: 180 PKARYKVQLDPTVDEVKKLCNTCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 239
Query: 222 IPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHE 281
IPLP+SDLDSWL+TPSIYVFDCSAAGMIVNAF+ELHDW AS +GSTRDCILLAACEAHE
Sbjct: 240 IPLPVSDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWNASGSAGSTRDCILLAACEAHE 299
Query: 282 TLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGEL 341
TLPQS+EFPADVFTSCLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGEL
Sbjct: 300 TLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGEL 359
Query: 342 NWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 401
NWIFTAVTDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP
Sbjct: 360 NWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 419
Query: 402 THQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPE 461
THQHHMWDAWDMAAEICLSQLPSLV DPNAE+QPSPFF+EQLTAFEVWLDHG EHKKPPE
Sbjct: 420 THQHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLTAFEVWLDHGFEHKKPPE 479
Query: 462 QLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQIL 521
QLPIVLQVLLSQCHRFRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQIL
Sbjct: 480 QLPIVLQVLLSQCHRFRALVLLGRFLDMGRWAVDLALSVGIFPYVLKLLQTTTPELRQIL 539
Query: 522 VFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 581
VFIWTKILALDKSCQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQE
Sbjct: 540 VFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQE 599
Query: 582 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIY 641
ACI+AGLIHVCLKHLQGS+PND QTEPLFLQWLCLCLGKLWEDFTEAQ +G +AD+PAIY
Sbjct: 600 ACIKAGLIHVCLKHLQGSVPNDTQTEPLFLQWLCLCLGKLWEDFTEAQILGLQADSPAIY 659
Query: 642 VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVV 701
PLL EPQPEVRASA F+L TLLD+G D CRDG GD+E DDDEKIRAEISI+RSLL+ V
Sbjct: 660 APLLLEPQPEVRASAAFALATLLDVGGDVCRDGATGDDEFDDDEKIRAEISIVRSLLSAV 719
Query: 702 SDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG--- 758
SDGSPLVRAEVAVALARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSLAHIK TGSG
Sbjct: 720 SDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLSSLPSLAHIKATGSGHAN 779
Query: 759 --------SIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSD 808
SIVSSQ GPLTRVG++ +VVRDGR STSSP AG+MHGSPLSDDSS HSD
Sbjct: 780 PNQYVPHASIVSSQFGPLTRVGSDSPSVVRDGRASTSSP-TTAGIMHGSPLSDDSSLHSD 838
Query: 809 SGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQV 868
SGILND VSNG V H RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGRRVLSIIGIEQV
Sbjct: 839 SGILNDIVSNGEVLHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRRVLSIIGIEQV 898
Query: 869 VTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL 928
VTK V S G++ P T+ +PSLAGL RSSSWFDM+ GH+PL FRTPPVSPPR S+L
Sbjct: 899 VTKSVNSTGSSG----PKTS--SPSLAGLARSSSWFDMHAGHIPLTFRTPPVSPPRSSYL 952
Query: 929 PGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLL 988
GMRRVCSLEFRPHL+NSPDSGLADPLL S S +ERSLLP STIYNWSCGHFSKPLL
Sbjct: 953 TGMRRVCSLEFRPHLMNSPDSGLADPLLASVGSSGGTERSLLPQSTIYNWSCGHFSKPLL 1012
Query: 989 TAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTAL 1048
T DDTEEIL RREEREKFALEHIA CQ S +VS LNN IA WDT+FE GTKTAL
Sbjct: 1013 TTPDDTEEILVRREEREKFALEHIAMCQHS------SVSNLNNRIASWDTKFETGTKTAL 1066
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
LQPFSPIVVAADENERI++WNYEE TLLN FDNHDFPD+G+SKLCLVNELD SLLLVASC
Sbjct: 1067 LQPFSPIVVAADENERIRVWNYEEATLLNGFDNHDFPDRGVSKLCLVNELDDSLLLVASC 1126
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+GNIRIWKDY K KQKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLW
Sbjct: 1127 DGNIRIWKDYTVKGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLW 1186
Query: 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1228
DL+KE Q+++ IPSSSDCS+SA++ASQVHGGQ AGFVDGSV+LYDVRTP+MLVC+TRPH
Sbjct: 1187 DLDKE-QLIHSIPSSSDCSVSAMSASQVHGGQFTAGFVDGSVKLYDVRTPEMLVCATRPH 1245
Query: 1229 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1288
T+ VE+VVGI F PGLDP KIVSASQAGD++FLD+RN++D YLTI AHRGSL+ALAVHRH
Sbjct: 1246 TENVEKVVGIGFHPGLDPGKIVSASQAGDMKFLDMRNYRDPYLTIKAHRGSLTALAVHRH 1305
Query: 1289 APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348
APIIASGSAKQ+IK+FSL GE LG+IRYH + MAQKIG V+CLTFHPYQVLLAAG+ DA
Sbjct: 1306 APIIASGSAKQIIKLFSLNGEPLGSIRYHL-TIMAQKIGPVSCLTFHPYQVLLAAGATDA 1364
Query: 1349 CVSIHS 1354
SI++
Sbjct: 1365 LFSIYA 1370
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464424|ref|XP_004149929.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] gi|449517611|ref|XP_004165839.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2239 bits (5803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1376 (82%), Positives = 1219/1376 (88%), Gaps = 43/1376 (3%)
Query: 1 MALGDLMASRFSQS--AVVSNHLNDDCGSAHGDVD-----LRRDSDTASSSYTNNASVTT 53
MALGDLMASR SQS AVVSNHL DDC S++ D D LRRDS+ ASSSY
Sbjct: 1 MALGDLMASRISQSSLAVVSNHL-DDCSSSNHDDDGDLISLRRDSEVASSSYA------N 53
Query: 54 ITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCL 113
TT T++ YLPQT+VLCELRH+AFEA P+GPSD+GLVSKWRPKDRMKTGCVALVLCL
Sbjct: 54 AAVTTATTMVYLPQTIVLCELRHDAFEACLPAGPSDTGLVSKWRPKDRMKTGCVALVLCL 113
Query: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPT 173
NISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYERWQPRARYKVQLDPT
Sbjct: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERWQPRARYKVQLDPT 173
Query: 174 VDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWL 233
V+EVKKLC+TCR+YAK ERVLFHYNGHGVPKPTA+GEIWLFNKSYTQYIPLPISDLDSWL
Sbjct: 174 VEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWL 233
Query: 234 KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADV 293
KTPSIYVFDCSAAGMIVNAF ELHD SGSTRDCILLAACE+HETLPQ EFPADV
Sbjct: 234 KTPSIYVFDCSAAGMIVNAFTELHD-----PSGSTRDCILLAACESHETLPQRAEFPADV 288
Query: 294 FTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIA 353
FTSCLTTPI MALRWFCKRSLL ESLD SLIDKIPGRQTDR+TLLGELNWIFTAVTDTIA
Sbjct: 289 FTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIA 348
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM
Sbjct: 349 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 408
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
AAEICLSQLP+LV DPN E+QPSPFF+EQLTAFEVWLDHGSE+KKPPEQLPIVLQVLLSQ
Sbjct: 409 AAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQ 468
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 533
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK
Sbjct: 469 GHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 528
Query: 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 593
SCQVDLVKDGGH YFIRFLDS+EA+PEQRAMAAFVLAVIVDGHRRGQEACIEA LIHVCL
Sbjct: 529 SCQVDLVKDGGHTYFIRFLDSLEAFPEQRAMAAFVLAVIVDGHRRGQEACIEANLIHVCL 588
Query: 594 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 653
KHLQ S PND QTEPLFLQWLCLCLGKLWED+ +AQ IG +ADAPA++ LL+EPQPEVR
Sbjct: 589 KHLQSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVFSSLLAEPQPEVR 648
Query: 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 713
ASA+F+LGTLLD+G DS RDGV D+ DDDEKIRAE SI+ SLL+VVSDGSPLVRAEVA
Sbjct: 649 ASAIFALGTLLDVGNDSSRDGVVDDDC-DDDEKIRAETSIVGSLLSVVSDGSPLVRAEVA 707
Query: 714 VALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVS 762
VALARFAFGH +HLKSIAAAY KP NSLL SLPSLAHI+++G+ GSIVS
Sbjct: 708 VALARFAFGHNKHLKSIAAAYWKPHCNSLLSSLPSLAHIRSSGNAYTNSNQHMPHGSIVS 767
Query: 763 SQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILN-DGVSNG 819
SQIGPL R GNE +VRDGRVSTSSPLAN G+MHGSPLSDDSSQHSDSG+L+ D VSNG
Sbjct: 768 SQIGPLLRFGNENSTLVRDGRVSTSSPLANTGMMHGSPLSDDSSQHSDSGVLHEDVVSNG 827
Query: 820 VVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNT 879
VNH RPKPL++A+YSQCVL MC LA DPSPRIA+LGRRVLSIIGIEQVVTKPV + +
Sbjct: 828 TVNHSRPKPLNNALYSQCVLTMCALANDPSPRIASLGRRVLSIIGIEQVVTKPVKASSSG 887
Query: 880 SRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 939
+P D T ++ PS AGL RSSSWFDMNGGHLPL FRTPPVSPPR S+L GMRRVCSLEF
Sbjct: 888 LKPTDGTASSQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEF 947
Query: 940 RPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILA 999
RP L+NSPDSGLADPL GSG S SERS LP STIYNWSCGHFSKPLLT ADD EEI
Sbjct: 948 RPQLMNSPDSGLADPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTVADDGEEIFT 1007
Query: 1000 RREEREKFALEHIAKCQRSCNSFDLAVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVA 1058
RREEREKFALE IAKCQ S VSKL NNPIA WDT+FE GTKT LLQPFSPIVVA
Sbjct: 1008 RREEREKFALERIAKCQHS------PVSKLNNNPIASWDTKFEMGTKTLLLQPFSPIVVA 1061
Query: 1059 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118
ADENERI++WNYEE LLNSFDNHDFPDKGISKLCLVNELD SLLL ASC+GNIRIWKDY
Sbjct: 1062 ADENERIRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGNIRIWKDY 1121
Query: 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1178
K KQKLVTAFS+IQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+V
Sbjct: 1122 TLKGKQKLVTAFSAIQGHKPGVRSINAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLVK 1180
Query: 1179 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238
IPSSSDCSISAL+ASQVHGGQLAAGF DGSV+LYD R P+MLVC+ RPH Q+VE+VVGI
Sbjct: 1181 SIPSSSDCSISALSASQVHGGQLAAGFFDGSVKLYDARIPEMLVCTMRPHVQKVEKVVGI 1240
Query: 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1298
FQPGLD +KIVSASQAGDIQFLDIRN +D YLTIDAHRGSL+ALAVHRHAPI+ASGSAK
Sbjct: 1241 GFQPGLDSSKIVSASQAGDIQFLDIRNQRDRYLTIDAHRGSLTALAVHRHAPILASGSAK 1300
Query: 1299 QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
QLIKVFSL+G+QLGTIRY HP+FM QKIGSV+CLTFHPY+VLLAAG+ADACVSI++
Sbjct: 1301 QLIKVFSLDGDQLGTIRY-HPTFMPQKIGSVSCLTFHPYEVLLAAGAADACVSIYA 1355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530199|ref|XP_003533671.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2214 bits (5737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1127/1397 (80%), Positives = 1212/1397 (86%), Gaps = 74/1397 (5%)
Query: 1 MALGDLMASRFSQSAVV-----SNHLND------------------DCGSAHGDVDL--R 35
MALGDLMASRFSQS V+ NHL+D + S++ D D R
Sbjct: 1 MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHR 60
Query: 36 RDSDTA-----SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDS 90
RDS+ A S +Y NA+ TS+AYLP TVVLCELRH+AFEA+ P+GPSDS
Sbjct: 61 RDSEAAIAIISSGNYAGNAA---------TSMAYLPHTVVLCELRHDAFEAAVPAGPSDS 111
Query: 91 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIG 150
GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IG
Sbjct: 112 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIG 171
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
K LS QYERWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGE
Sbjct: 172 KTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGE 231
Query: 211 IWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRD 270
IW+FNKSYTQYIPLPI++LDSWLKTPSIYVFDCSAAGMIVN+FIELH+W ASN S S RD
Sbjct: 232 IWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRD 291
Query: 271 CILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGR 330
CILLAACEAHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGR
Sbjct: 292 CILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGR 351
Query: 331 QTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 390
DR+TLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN
Sbjct: 352 PNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 411
Query: 391 CSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWL 450
CSP+SHPMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWL
Sbjct: 412 CSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWL 471
Query: 451 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510
DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL
Sbjct: 472 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 531
Query: 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLA 570
QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLA
Sbjct: 532 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLA 591
Query: 571 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQT 630
VIVDGHRRGQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQT
Sbjct: 592 VIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQT 651
Query: 631 IGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE 690
IG + DA I+ PLLSEPQPEVRASAVF+LGTLLD+GFDSCR V GDEECDDD+K RAE
Sbjct: 652 IGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCR-SVGGDEECDDDDKFRAE 710
Query: 691 ISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLA 750
+SI++S+L V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL
Sbjct: 711 VSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLT 770
Query: 751 HIKTTGS-----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGS 797
+IK + GSIVS QIGP+ RVGN+ VVRDGRVS+SSPLA +G+MHGS
Sbjct: 771 NIKGSVGGYAKQNQHMPHGSIVSPQIGPI-RVGNDNSPVVRDGRVSSSSPLAGSGIMHGS 829
Query: 798 PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGR 857
PLSDDSS HSDSGILNDG SNGV NH PKP D+A+YSQCVLAMCTLAKDPSPRIA LGR
Sbjct: 830 PLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGR 889
Query: 858 RVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRT 917
RVLSIIGIEQVV KP+ S G + +TA+P L RSSSWFDMNGGHLPL FRT
Sbjct: 890 RVLSIIGIEQVVAKPLKSSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRT 940
Query: 918 PPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYN 977
PPVSPPR S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+
Sbjct: 941 PPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYS 1000
Query: 978 WSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWD 1037
WSCGHFSKPLLTAADD+EE+ ARREEREKFALEHIAKCQ S AVS+L NPIA WD
Sbjct: 1001 WSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHS------AVSRLTNPIAKWD 1054
Query: 1038 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1097
KGT+TALLQPFSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNE
Sbjct: 1055 I---KGTQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNE 1111
Query: 1098 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1157
LD SLLL AS +GNIRIWKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLY
Sbjct: 1112 LDESLLLAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLY 1171
Query: 1158 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217
ASGE+SSIMLWD++KE Q+VN SSSDCS+SAL ASQVHGGQ AGF+DGSVRLYDVRT
Sbjct: 1172 ASGEISSIMLWDVDKE-QLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRT 1230
Query: 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277
PDMLVC RPHTQ+VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHR
Sbjct: 1231 PDMLVCGLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHR 1290
Query: 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337
GSL+ALAVHRHAPIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL FHPY
Sbjct: 1291 GSLTALAVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLNFHPY 1349
Query: 1338 QVLLAAGSADACVSIHS 1354
QVLLAAG+ADACV I++
Sbjct: 1350 QVLLAAGAADACVCIYA 1366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566757|ref|XP_003551595.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2185 bits (5661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1117/1389 (80%), Positives = 1200/1389 (86%), Gaps = 66/1389 (4%)
Query: 1 MALGDLMASRFSQSAV-----VSNHLNDDCGSA----------HGDVDL--RRDSDTA-- 41
MALGDLMAS SQS V + +HL+D SA + D D RRDS+ A
Sbjct: 1 MALGDLMASHLSQSTVLVVPSIHSHLDDSTTSAAVAAVNNSSSNDDADFAHRRDSEAAIS 60
Query: 42 ---SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRP 98
S +Y NA+ TS+AYLP TV LCELRH+AFEA+ P+GPSDSGLVSKWRP
Sbjct: 61 SSSSGNYAGNAA---------TSMAYLPHTVFLCELRHDAFEAAVPAGPSDSGLVSKWRP 111
Query: 99 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYE 158
KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYE
Sbjct: 112 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYE 171
Query: 159 RWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSY 218
RWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSY
Sbjct: 172 RWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSY 231
Query: 219 TQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACE 278
TQYIPLPIS+LDSWLKTPSIYV DCSAAGMIVN FIELH+W SN S S RDCILLAACE
Sbjct: 232 TQYIPLPISELDSWLKTPSIYVIDCSAAGMIVNFFIELHEWSPSNSSVSQRDCILLAACE 291
Query: 279 AHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLL 338
AHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESL SLIDKIPGR DR+TLL
Sbjct: 292 AHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLVNSLIDKIPGRPNDRKTLL 351
Query: 339 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPM 398
GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSP+SHPM
Sbjct: 352 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPM 411
Query: 399 LPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKK 458
LPPTHQHHMWDAWDMAAE+CLSQLPSLV DPN+E+Q S FF+EQLTAFEVWLDHGSEHKK
Sbjct: 412 LPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNSEFQRSTFFTEQLTAFEVWLDHGSEHKK 471
Query: 459 PPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518
PPEQLPIVLQVL SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR
Sbjct: 472 PPEQLPIVLQVLHSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 531
Query: 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578
QILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLAVIVDGHRR
Sbjct: 532 QILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRR 591
Query: 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638
GQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQTIG + DA
Sbjct: 592 GQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDAT 651
Query: 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698
I+ PLLSEPQPEVRASAVF+LGT+LD+GFDSCR V GDEECDDD+K RAE+SI++S+L
Sbjct: 652 TIFAPLLSEPQPEVRASAVFALGTILDVGFDSCR-SVGGDEECDDDDKFRAEVSIVKSML 710
Query: 699 TVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS- 757
V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSLA+IK +
Sbjct: 711 GVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLANIKGSVGG 770
Query: 758 ----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQ 805
GSIVS QIGP+ RVGN+ V+RDGRVS+SSPLA +G+MHGSPLSDDSS
Sbjct: 771 YAKQNQHMPYGSIVSPQIGPI-RVGNDNSPVIRDGRVSSSSPLAGSGIMHGSPLSDDSSH 829
Query: 806 HSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGI 865
HSDSGILNDG SNGVVNH PKPLD+A+YSQCVLAMCTLAKDPSPRIA LGRRVLSIIGI
Sbjct: 830 HSDSGILNDGFSNGVVNHTGPKPLDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGI 889
Query: 866 EQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQ 925
EQVV KP+ G + +TA+P L RSSSWFDMNGGHLPL FRTPPVSPPR
Sbjct: 890 EQVVAKPLKFSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRTPPVSPPRP 940
Query: 926 SFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSK 985
S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+WSCGHFSK
Sbjct: 941 SYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSK 1000
Query: 986 PLLTAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTK 1045
PLLTAADD+EE ARREEREKFALEHI KCQ S AVS+L NPIA WD KGT+
Sbjct: 1001 PLLTAADDSEEASARREEREKFALEHIGKCQHS------AVSRLINPIAKWDI---KGTQ 1051
Query: 1046 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1105
TALLQPFSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL
Sbjct: 1052 TALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLA 1111
Query: 1106 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1165
AS +GNIRIWKDY K KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+SSI
Sbjct: 1112 ASSDGNIRIWKDYTLKGKQKLVTAFSSIHGHKPGVRSLNAVVDWQQQCGYLYASGEISSI 1171
Query: 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225
MLWD++KE Q+VN SSSDCS+S L ASQVHGGQ AAGFVDGSVRLYDVRTPDMLVC
Sbjct: 1172 MLWDVDKE-QLVNSKSSSSDCSVSVLAASQVHGGQFAAGFVDGSVRLYDVRTPDMLVCGL 1230
Query: 1226 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1285
RPHTQ+VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHRGSL+ALAV
Sbjct: 1231 RPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAV 1290
Query: 1286 HRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345
HRHAPIIASGSAKQ IKVFSLEG+QLGTI+Y +P+ MAQKIGSV+CL FHPYQVLLAAG+
Sbjct: 1291 HRHAPIIASGSAKQFIKVFSLEGDQLGTIKY-YPTLMAQKIGSVSCLNFHPYQVLLAAGA 1349
Query: 1346 ADACVSIHS 1354
ADACV I++
Sbjct: 1350 ADACVCIYA 1358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506523|ref|XP_003623550.1| Regulatory-associated protein of mTOR [Medicago truncatula] gi|355498565|gb|AES79768.1| Regulatory-associated protein of mTOR [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2135 bits (5532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1089/1452 (75%), Positives = 1190/1452 (81%), Gaps = 127/1452 (8%)
Query: 1 MALGDLMASRFSQSAV--VSNH----------------------LNDDCGSAHGDVDLRR 36
MALGDLMASRFSQS V V NH LNDD + V RR
Sbjct: 1 MALGDLMASRFSQSTVLIVPNHHRDDSTSTTAFSASASSASAAALNDDGSDFNSSVPNRR 60
Query: 37 DSDTASSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKW 96
DS+ ++S +S + T++ YLPQT ELRH+AFE P+GPSDSGLVSKW
Sbjct: 61 DSEFGAAS----SSSAGVYGNAATTMVYLPQTSFFNELRHDAFELELPTGPSDSGLVSKW 116
Query: 97 RPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQ 156
RPKDRMKTGCVALVLCLNI+VDPPDVIKISPCARMECWIDPFSMAPQKALE IGK+L+ Q
Sbjct: 117 RPKDRMKTGCVALVLCLNINVDPPDVIKISPCARMECWIDPFSMAPQKALELIGKSLTSQ 176
Query: 157 YERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK 216
YERWQP+ARYK QLDPT+DEVKKLC TCRRYAK ERVLFHYNGHGVPKPT NGE+W+FNK
Sbjct: 177 YERWQPKARYKCQLDPTLDEVKKLCTTCRRYAKSERVLFHYNGHGVPKPTHNGELWVFNK 236
Query: 217 SYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAA 276
SYTQYIPLP++DLDSWLKTPSIYVFDCSAAG +VNAFI+LH+W ASN GS RDCI+LAA
Sbjct: 237 SYTQYIPLPLNDLDSWLKTPSIYVFDCSAAGKVVNAFIQLHEWNASNSDGSPRDCIMLAA 296
Query: 277 CEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRT 336
CEAHETLPQS EFPADVFT+CLTTPI MALRWF RSLL +S DY LIDKIPGR DR+T
Sbjct: 297 CEAHETLPQSVEFPADVFTACLTTPIKMALRWFSTRSLLRDSFDYLLIDKIPGRPNDRKT 356
Query: 337 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISH 396
LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANC+P+SH
Sbjct: 357 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCTPVSH 416
Query: 397 PMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEH 456
PMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWLDHGSEH
Sbjct: 417 PMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEH 476
Query: 457 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-------------------- 496
KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL
Sbjct: 477 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLVISITIRQIFVQFLSIFSKT 536
Query: 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS---------------------- 534
ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 537 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSLLKYMNMLFFPSDLVQDKVRKV 596
Query: 535 -------------------CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDG 575
CQVDLVKDGGH YF++FLDS EAYPEQRAMAAFVLAVIVDG
Sbjct: 597 KDREYKKREINITGQYEVSCQVDLVKDGGHIYFMKFLDSSEAYPEQRAMAAFVLAVIVDG 656
Query: 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 635
HRRGQEACIEAGL HVCLKHL+ S PND+QTEPLFLQWLCLCLGKLWE+F E + IG +
Sbjct: 657 HRRGQEACIEAGLSHVCLKHLESSSPNDSQTEPLFLQWLCLCLGKLWEEFPEGKIIGLQG 716
Query: 636 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695
A +I PLLSEPQPEVRASAVF+LGTL+D+GFDSCR GDEECDDD+K RAE+SI+R
Sbjct: 717 HATSILAPLLSEPQPEVRASAVFALGTLVDVGFDSCRS--VGDEECDDDDKFRAEVSIVR 774
Query: 696 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTT 755
SLL+V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL +IK T
Sbjct: 775 SLLSVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQTNSLINSLPSLTNIKDT 834
Query: 756 GSG-----------SIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDD 802
G G SIVS QIGPL RVG N V+RDGRVS+SSPLA++G+MHGSPLSD+
Sbjct: 835 GGGYSKQNQHMAHGSIVSPQIGPL-RVGSDNSKVIRDGRVSSSSPLASSGIMHGSPLSDN 893
Query: 803 SSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSI 862
SS HSDSGILNDG SNGVVN PKPLD+A+YSQCVLAMCTLAKDPSPR+ LGRRVLSI
Sbjct: 894 SSHHSDSGILNDGFSNGVVNSFGPKPLDNALYSQCVLAMCTLAKDPSPRVGNLGRRVLSI 953
Query: 863 IGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSP 922
IGIEQVV KP+ +P T++ P A L RSSSWFDMNGGHLPL FRTPPVSP
Sbjct: 954 IGIEQVVAKPL-------KPSGVRTSSVVPVSASLARSSSWFDMNGGHLPLTFRTPPVSP 1006
Query: 923 PRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGH 982
PR S++ GMRRVCSLEFRPHL+ SPD+GLADPLLGSG +RSLLP S+IYNWSCGH
Sbjct: 1007 PRPSYIAGMRRVCSLEFRPHLMTSPDTGLADPLLGSG----TFDRSLLPQSSIYNWSCGH 1062
Query: 983 FSKPLLTAADDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEK 1042
FSK LLTAADD+EE+LARREEREKFALEHI KCQ S AVS+L NPIA WD K
Sbjct: 1063 FSKSLLTAADDSEEVLARREEREKFALEHIVKCQHS------AVSRLTNPIAKWDI---K 1113
Query: 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL 1102
GT+T LLQPFSPIVVAADENERI++WN+EE TLLNSFDNHDFPDKGISKLCLVNELD SL
Sbjct: 1114 GTQTLLLQPFSPIVVAADENERIRVWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSL 1173
Query: 1103 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1162
LL AS +GN+R+WKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE
Sbjct: 1174 LLAASSDGNVRVWKDYSLRGKQKLVTAFSSIHGHKPGVRSPNAVVDWQQQCGYLYASGET 1233
Query: 1163 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1222
S IM+WDL+KEQ +VN IPSSS+CS+SAL ASQVHGGQ AAGFVDGSVRLYD RTP+MLV
Sbjct: 1234 SLIMMWDLDKEQ-LVNTIPSSSECSVSALAASQVHGGQFAAGFVDGSVRLYDARTPEMLV 1292
Query: 1223 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA 1282
C RPHTQ+VE+V+GI FQPGLDP K+VSASQAGDIQFLDIRNH AYLTI+AHRGSL+A
Sbjct: 1293 CGLRPHTQRVEKVMGIGFQPGLDPGKLVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTA 1352
Query: 1283 LAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1342
LAVHRHAPIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL+FHPYQ+LLA
Sbjct: 1353 LAVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLSFHPYQLLLA 1411
Query: 1343 AGSADACVSIHS 1354
AG+ADACV I++
Sbjct: 1412 AGAADACVCIYA 1423
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398267|ref|NP_566335.1| regulatory associated protein of mTOR [Arabidopsis thaliana] gi|75331762|sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gi|16648937|gb|AAL24320.1| Unknown protein [Arabidopsis thaliana] gi|31711792|gb|AAP68252.1| At3g08850 [Arabidopsis thaliana] gi|56266687|gb|AAV84960.1| raptor1B [Arabidopsis thaliana] gi|332641166|gb|AEE74687.1| regulatory associated protein of mTOR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2092 bits (5419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1070/1361 (78%), Positives = 1181/1361 (86%), Gaps = 31/1361 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSCNSFDLAVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED 1073
CQ S ++SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE
Sbjct: 1006 CQHS------SISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEA 1059
Query: 1074 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1133
TLLN FDNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSI
Sbjct: 1060 TLLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSI 1119
Query: 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193
QGHKPG R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+A
Sbjct: 1120 QGHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSA 1178
Query: 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253
SQVHGGQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSAS
Sbjct: 1179 SQVHGGQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSAS 1237
Query: 1254 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1313
QAGDIQFLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG
Sbjct: 1238 QAGDIQFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGI 1297
Query: 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
IRY +PSFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1298 IRY-YPSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833636|ref|XP_002884700.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] gi|297330540|gb|EFH60959.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2086 bits (5405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1072/1362 (78%), Positives = 1181/1362 (86%), Gaps = 33/1362 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIALVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHD G+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDMGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLS LP LV DP E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSHLPQLVLDPTVEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL++SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLSSPDSGLADP 949
Query: 955 LLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIA 1013
LLG SG SERSLLP STIY+WSCGHFSKPLL AD ++EI A+REE+EKFALEHIA
Sbjct: 950 LLGVSG-----SERSLLPLSTIYSWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIA 1004
Query: 1014 KCQRSCNSFDLAVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE 1072
KCQ S ++SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE
Sbjct: 1005 KCQHS------SISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEE 1058
Query: 1073 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1132
TLLN FDNHDFPDKGISKLCLVNELD S LLVASC+G++RIWK+Y K KQKLVT FSS
Sbjct: 1059 ATLLNGFDNHDFPDKGISKLCLVNELDDSQLLVASCDGSVRIWKNYATKGKQKLVTGFSS 1118
Query: 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192
IQGHKPG R N VVDWQQQSGYLYASGEVS++ LWDLEKE Q+V IPS S+C ++AL+
Sbjct: 1119 IQGHKPGARDLNAVVDWQQQSGYLYASGEVSTVTLWDLEKE-QLVRSIPSESECGVTALS 1177
Query: 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1252
ASQVHGGQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSA
Sbjct: 1178 ASQVHGGQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSA 1236
Query: 1253 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1312
SQAGDIQFLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG
Sbjct: 1237 SQAGDIQFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLG 1296
Query: 1313 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354
IRY +PSFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1297 RIRY-YPSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1354 | ||||||
| TAIR|locus:2097633 | 1344 | RAPTOR1 "AT3G08850" [Arabidops | 0.852 | 0.858 | 0.764 | 0.0 | |
| RGD|1311784 | 1345 | Rptor "regulatory associated p | 0.285 | 0.287 | 0.607 | 1.2e-262 | |
| DICTYBASE|DDB_G0270398 | 1509 | raptor "Raptor family protein" | 0.293 | 0.263 | 0.639 | 8.4e-261 | |
| FB|FBgn0029840 | 1624 | raptor "raptor" [Drosophila me | 0.289 | 0.241 | 0.578 | 2e-220 | |
| POMBASE|SPAC57A7.11 | 1313 | mip1 "WD repeat protein, Rapto | 0.429 | 0.442 | 0.524 | 1.4e-215 | |
| UNIPROTKB|Q2KFQ3 | 1582 | MGCH7_ch7g632 "Putative unchar | 0.451 | 0.386 | 0.479 | 1.3e-191 | |
| ASPGD|ASPL0000073481 | 1431 | AN4639 [Emericella nidulans (t | 0.381 | 0.360 | 0.524 | 3.7e-187 | |
| UNIPROTKB|Q8N122 | 1335 | RPTOR "Regulatory-associated p | 0.288 | 0.292 | 0.63 | 6.7e-186 | |
| UNIPROTKB|F1MG06 | 1335 | RPTOR "Uncharacterized protein | 0.288 | 0.292 | 0.63 | 3.7e-185 | |
| MGI|MGI:1921620 | 1335 | Rptor "regulatory associated p | 0.288 | 0.292 | 0.632 | 5.3e-184 |
| TAIR|locus:2097633 RAPTOR1 "AT3G08850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4612 (1628.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 902/1180 (76%), Positives = 985/1180 (83%)
Query: 1 MALGDLMASRFSQSAV--VSNHLND-DCGSAHGDVDLRR-DSDTASSSYTNNASVXXXXX 56
MALGDLM SRFSQS+V VSNH D DC S+H D D RR DS+ SSS N +
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNGTTEGAAT 60
Query: 57 XXXXSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
S+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 61 AT--SMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTP 236
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNKSYTQYIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 237 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 296
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 297 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 356
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 357 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 416
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 417 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 476
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 477 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 596
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 597 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 656
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 657 VFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSPXXXXXXXXXX 716
VF+LGTLLDIGFDS + KIRAE +II+SLL VVSDGSP
Sbjct: 659 VFALGTLLDIGFDSNKSVVEDEFDDDE--KIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 717 XXXXXGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 775
GHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 776 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 834
V R+ R+S SSPL ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRIS-SSPLGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 894
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 895 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 954
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 955 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1014
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1015 CQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT 1074
CQ S S NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE T
Sbjct: 1006 CQHSSIS-----KLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEAT 1060
Query: 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1134
LLN FDNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQ
Sbjct: 1061 LLNGFDNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQ 1120
Query: 1135 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1174
GHKPG R N VVDWQQQSGYLYASGE S++ LWDLEKEQ
Sbjct: 1121 GHKPGARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQ 1160
|
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| RGD|1311784 Rptor "regulatory associated protein of MTOR, complex 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 1.2e-262, Sum P(3) = 1.2e-262
Identities = 251/413 (60%), Positives = 304/413 (73%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR---SLLHE-SLDYS 322
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + SL+ +LD
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 323 -----------LIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLL 371
++ +IPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLL
Sbjct: 296 ENSPGSTNANIILSRIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLL 355
Query: 372 VASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA 431
VASLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A
Sbjct: 356 VASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA 415
Query: 432 EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGP 491
++ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GP
Sbjct: 416 -FRHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGP 474
Query: 492 WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF 551
WA ALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+
Sbjct: 475 WA---ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSV 531
Query: 552 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611
L E R M AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL
Sbjct: 532 LADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLR 584
Query: 612 QWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
QW+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 585 QWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 637
|
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| DICTYBASE|DDB_G0270398 raptor "Raptor family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 8.4e-261, Sum P(4) = 8.4e-261
Identities = 259/405 (63%), Positives = 315/405 (77%)
Query: 260 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 319
G+S+ S RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L +
Sbjct: 350 GSSSSSSHQRDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGI 408
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
++DKIPG + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+
Sbjct: 409 TADMLDKIPGNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNY 468
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERIMRSANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF
Sbjct: 469 LLAERIMRSANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFF 528
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
+EQLTAFEVWL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL
Sbjct: 529 TEQLTAFEVWLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALC 588
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S +
Sbjct: 589 VGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPA 648
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
+QR M+AFVL+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+
Sbjct: 649 DQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMA 701
Query: 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
K+WE+F EA+ + +A LL++ PEVRASAV +LG L+
Sbjct: 702 KMWENFEEAKWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI 746
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| FB|FBgn0029840 raptor "raptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 2.0e-220, Sum P(5) = 2.0e-220
Identities = 235/406 (57%), Positives = 294/406 (72%)
Query: 262 SNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLH--ESL 319
+N S ++CI LAAC A+E LP + + PAD+FTSCLTTPI +AL+W+ + L +
Sbjct: 410 TNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRI 469
Query: 320 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 379
LIDKIPG+ DRRT++GELNWIFTA+TDTIAWN LP +LFQRLFRQDLLVASLFRNF
Sbjct: 470 QSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNF 529
Query: 380 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 439
LLAERI+RS +C+P+S P LPP ++H MW AWD+ ++ L QLP ++ D NA Y+ PFF
Sbjct: 530 LLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEIL-DHNAPYRQLPFF 588
Query: 440 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 499
QLTAF+VWLD SE + PPEQLPIVLQVLLSQ HR RAL LL RFLD+GPWAV+LAL
Sbjct: 589 EHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALG 648
Query: 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 559
VGIFPYVLKLLQ++T ELR +LVFIW KILA+D SCQVDLVK+ + YF+ L
Sbjct: 649 VGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKE--YKYFLSVLQDTSVSK 706
Query: 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619
E R ++AFVL+ IV GQ + ++ L+ +CL+ L ND L QWL +CLG
Sbjct: 707 EHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQL-----NDGSW--LLRQWLAICLG 759
Query: 620 KLWEDFTEAQTIGRRADA-PAIYVPLLSEPQPEVRASAVFSLGTLL 664
LW++F +A+ G R A +YV LL + PEVRA+AVF+LGT +
Sbjct: 760 MLWQNFEKARWSGARDLAHEKLYV-LLRDSIPEVRAAAVFALGTFI 804
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| POMBASE|SPAC57A7.11 mip1 "WD repeat protein, Raptor homolog Mip1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 1.4e-215, Sum P(4) = 1.4e-215
Identities = 324/618 (52%), Positives = 413/618 (66%)
Query: 75 RHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECW 134
RH + + P+++ + WR ++R+KT AL++CLNI VDPPDVIK +P A+ ECW
Sbjct: 89 RHRGVISKKNAEPTET--IHDWRMRERLKTVSAALLVCLNIGVDPPDVIKPNPAAKYECW 146
Query: 135 IDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVL 194
IDPFS+ KALE IGKNL QQYE R RY+ LDP ++EVKKLC RR AK ER+L
Sbjct: 147 IDPFSLPASKALEAIGKNLQQQYETLSMRTRYRHYLDPAIEEVKKLCIGQRRNAKEERIL 206
Query: 195 FHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---N 251
FHYNGHGVP PTA+GEIW+FNK+YTQYIP+ + DL SWL P IYV+DCSAAG I+ N
Sbjct: 207 FHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFN 266
Query: 252 AFIELHDWGASNYSG---------STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302
F E D A + S CI LAAC ETLP + + PAD+FTSCLT+PI
Sbjct: 267 RFAEQRDKEALRIAKQNPNVLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLTSPI 326
Query: 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLF 362
+++RW+ ++ L+ +++ KIPGR DRRT LGELNWIFTA+TDTIAWNV P LF
Sbjct: 327 EISVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELNWIFTAITDTIAWNVFPKHLF 386
Query: 363 QRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQL 422
+RLFRQDL+VA+LFRNFLLAERIM +C P S P LPPTH H MW++WD+A + CLSQL
Sbjct: 387 RRLFRQDLMVAALFRNFLLAERIMLVHSCHPQSSPELPPTHDHPMWNSWDLAIDNCLSQL 446
Query: 423 PSLV-ADPNA---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFR 478
P ++ A+ EY+ S FFSEQLTAFEVWL G +KPP+QLP+VLQVLLSQ HR R
Sbjct: 447 PDMLDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLR 506
Query: 479 ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538
AL+LL +FLD+G WAVDLALS+GIFPYVLKLLQ+ EL+ +LVFIW +ILA+D SCQ D
Sbjct: 507 ALILLSKFLDLGVWAVDLALSIGIFPYVLKLLQSPAIELKPVLVFIWARILAVDDSCQAD 566
Query: 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA---GLIH---VC 592
L+KD G+ YF++ L+ P + F + I + HR + G C
Sbjct: 567 LLKDNGYGYFVQILN-----PNS---SIFPSSNISE-HRAMCAFILSVFCRGFPQGQLAC 617
Query: 593 LKH--LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 650
L L + + + L QW CLC+ +LWE+++EA+ G R +A ++ + P
Sbjct: 618 LNPQVLSHCLSHLNSPDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDSVP 677
Query: 651 EVRASAVFSLGTLLDIGF 668
EVRAS + + T L GF
Sbjct: 678 EVRASVLTAFTTFL--GF 693
|
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| UNIPROTKB|Q2KFQ3 MGCH7_ch7g632 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.3e-191, Sum P(2) = 1.3e-191
Identities = 314/655 (47%), Positives = 408/655 (62%)
Query: 73 ELRHEAFEASTPS-GPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARM 131
E RHE P P + + WR +DR+KT A+ +CLNI V+PPD +K +P A+M
Sbjct: 305 EKRHET--TGKPKLAPFE---IQDWRMRDRLKTVSAAIAVCLNIGVEPPDQLKTNPGAKM 359
Query: 132 ECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGE 191
E W DP QKALE IGK L QYE R RYK LDP+V++ KK C + R+ AK E
Sbjct: 360 EAWQDPTVTPAQKALENIGKALQSQYETLAMRTRYKQYLDPSVEDTKKFCLSLRKSAKDE 419
Query: 192 RVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVN 251
RVL HYNGHGVPKPT++GEIW+FNK+YTQYIP+ + DL WL+ P+I+V+DCS AG I++
Sbjct: 420 RVLLHYNGHGVPKPTSSGEIWVFNKNYTQYIPVSLYDLQHWLQAPTIFVWDCSEAGNILS 479
Query: 252 ---AFIELHDW--------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTT 300
F+E H+ ++Y + R I LAAC + + LP + PAD+FT CLTT
Sbjct: 480 NYHKFVEKHEKEEDEAVLRDPNHYKANFRPYIHLAACSSSQNLPTNPLLPADLFTCCLTT 539
Query: 301 PITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHD 360
PI MAL +F ++ L L K+PGR +RRT LGELNWIFTA+TDTIAW LP
Sbjct: 540 PIEMALWFFVLQNPLQTGLTPERAKKLPGRLQERRTPLGELNWIFTAITDTIAWTTLPRH 599
Query: 361 LFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS 420
LF++ FRQDL+VA+LFRNFLLA+R+M C+P S P LP T QH +W++WD+A + LS
Sbjct: 600 LFRKFFRQDLMVAALFRNFLLAQRVMSVYGCTPQSFPELPDTRQHPLWESWDLAVDQALS 659
Query: 421 QLPSLVADPNA----EYQPSPFFSEQLTAFEVWLDHGSE-HKKPPEQLPIVLQVLLSQCH 475
QLP L EYQ S FF+EQLTAF+V+L G +KPPEQLP+VLQVLLSQ H
Sbjct: 660 QLPMLERKETEGIEYEYQNSTFFTEQLTAFDVYLTRGDALQQKPPEQLPVVLQVLLSQQH 719
Query: 476 RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535
R RAL+LLGRFLD+GPWAV LALS+GI+PYVLKLLQ+ EL+ ++VFIWT++LA+D SC
Sbjct: 720 RVRALILLGRFLDLGPWAVQLALSIGIYPYVLKLLQSAAAELKPVMVFIWTRVLAVDTSC 779
Query: 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVL-AVIVDGHRRGQEACIEAGLIHVCLK 594
Q DL+KD G+ YF L E P + + A I+ +G + G + VC +
Sbjct: 780 QQDLIKDSGYQYFSNILKPSEGLPVANSDEHKAMCAFILAMLCKGYKP----GQV-VCNQ 834
Query: 595 -HLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPE 651
+ G E PL QW CLC+ +LW D EA+ G R +APA L + E
Sbjct: 835 TDIMGYCLYHILNEDNPLLRQWSCLCISQLWYDLPEAKWRGIRDNAPARLSILTKDGCSE 894
Query: 652 VRASAVFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSP 706
VRA+ ++++ T L I R E SI ++L + +DGSP
Sbjct: 895 VRAAVLYAMTTFLGIP-------------DLTDEVARIEESIAWTVLDMANDGSP 936
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| ASPGD|ASPL0000073481 AN4639 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 3.7e-187, Sum P(3) = 3.7e-187
Identities = 285/543 (52%), Positives = 366/543 (67%)
Query: 144 KALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVP 203
K +E IGK L +QYE R RYK LDP+VDE KK C + RR AK ERVLFHYNGHGVP
Sbjct: 236 KLMEQIGKKLQEQYETLSLRTRYKQYLDPSVDETKKFCVSLRRNAKDERVLFHYNGHGVP 295
Query: 204 KPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHD-- 258
PT +GEIW+FNK+YTQYIP+ + DL WL PS++VFD S AG IV + F+E H+
Sbjct: 296 LPTQSGEIWVFNKNYTQYIPVSLYDLQQWLAGPSLFVFDVSHAGNIVQNFHTFVEKHEKE 355
Query: 259 ------WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR 312
+ + DCI+LAAC+ +E+LP + + PAD+FT CLTTPI +ALR+F +
Sbjct: 356 NLEQKRLDPNAIVQNYGDCIILAACQKNESLPTNPDLPADLFTCCLTTPIEIALRYFILQ 415
Query: 313 SLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLV 372
+ L ++ ++PGR DRR+ LGELNWIFTA+TDTIAW LP LF++LFRQDL+V
Sbjct: 416 NPLQSNIRIDDF-RVPGRLQDRRSPLGELNWIFTAITDTIAWKTLPRALFKKLFRQDLMV 474
Query: 373 ASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA- 431
A+LFRNFLL+ERIMR+ C PIS P LP TH H +W +WD+A E+ L+QLP+L+
Sbjct: 475 AALFRNFLLSERIMRTYKCQPISSPELPETHNHPLWKSWDLAVEMVLAQLPALIDHEEGR 534
Query: 432 ---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLD 488
EYQ S FF+EQLTAFE++L G K PP+QLPIVLQVLLSQ HR RAL+LL +FLD
Sbjct: 535 RQYEYQHSTFFAEQLTAFEMYLSSGPTEKSPPDQLPIVLQVLLSQAHRLRALILLSKFLD 594
Query: 489 MGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548
+GPWAV LALS+GIFPYV+KLLQ+ EL+ ++VFIW +I+A+D + Q DL+KD G YF
Sbjct: 595 LGPWAVHLALSIGIFPYVVKLLQSAAQELKPVMVFIWARIMAVDHTVQNDLLKDNGIHYF 654
Query: 549 IRFLDSMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603
I L+ P E RAM AF++++ + +GQ C+ + L CL HL D
Sbjct: 655 ISILNPSSPIPVGNASEHRAMCAFIVSIFCKNYTQGQNVCLSSDLFESCLIHLM-----D 709
Query: 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663
+ PL QW CLC+ LW DF EA+ +G R AP L +P PEVRA+ + +L T
Sbjct: 710 VEN-PLLRQWSCLCISMLWSDFPEAKWMGIRCSAPMRLCELNFDPVPEVRAAMLHALMTF 768
Query: 664 LDI 666
L I
Sbjct: 769 LGI 771
|
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| UNIPROTKB|Q8N122 RPTOR "Regulatory-associated protein of mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 6.7e-186, Sum P(2) = 6.7e-186
Identities = 252/400 (63%), Positives = 301/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
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| UNIPROTKB|F1MG06 RPTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 3.7e-185, Sum P(2) = 3.7e-185
Identities = 252/400 (63%), Positives = 302/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLCSLLSDPIPEVRCAAVFALGTFV 627
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| MGI|MGI:1921620 Rptor "regulatory associated protein of MTOR, complex 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1300 (462.7 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 253/400 (63%), Positives = 303/400 (75%)
Query: 267 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 324
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 325 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 384
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 385 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 444
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 445 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 504
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 505 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 564
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 565 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624
AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLRQWVAICLGRIWQN 587
Query: 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C7J8E5 | RTOR2_ORYSJ | No assigned EC number | 0.7100 | 0.8847 | 0.9835 | yes | no |
| Q9LZW9 | RTOR2_ARATH | No assigned EC number | 0.7215 | 0.9623 | 0.9752 | no | no |
| Q0IQN5 | RTOR1_ORYSJ | No assigned EC number | 0.6937 | 0.9785 | 0.9749 | yes | no |
| Q93YQ1 | RTOR1_ARATH | No assigned EC number | 0.7861 | 0.9822 | 0.9895 | yes | no |
| Q8K4Q0 | RPTOR_MOUSE | No assigned EC number | 0.4146 | 0.8914 | 0.9041 | yes | no |
| Q8N122 | RPTOR_HUMAN | No assigned EC number | 0.4218 | 0.9032 | 0.9161 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVI1235 | hypothetical protein (1366 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.4198.1 | SubName- Full=Putative uncharacterized protein; (2483 aa) | • | • | • | 0.848 | |||||
 | grail3.0004013701 | hypothetical protein (317 aa) | • | • | • | 0.643 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1354 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-26 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 39/305 (12%)
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110
P ++ + IK+W+ E LL + H P + ++ D + L S +
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-----DGTYLASGSSDK 73
Query: 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170
IR+W D + + + T + GH V V + L +S +I +WD+
Sbjct: 74 TIRLW---DLETGECVRT----LTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDV 122
Query: 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PH 1228
E + + + +D ++++ S G +A+ DG+++L+D+RT C H
Sbjct: 123 ETGKC-LTTLRGHTD-WVNSVAFSP-DGTFVASSSQDGTIKLWDLRT---GKCVATLTGH 176
Query: 1229 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1288
T +V V +F P D K++S+S G I+ D+ T+ H ++++A
Sbjct: 177 TGEVNSV---AFSP--DGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPD 230
Query: 1289 APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347
++ASGS I+V+ L GE + T+ H SV L + P LA+GSAD
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHT--------NSVTSLAWSPDGKRLASGSAD 282
Query: 1348 ACVSI 1352
+ I
Sbjct: 283 GTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.6 bits (218), Expect = 5e-18
Identities = 76/364 (20%), Positives = 149/364 (40%), Gaps = 29/364 (7%)
Query: 993 DTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQPF 1052
E+ +L ++ L + + E + P
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 1053 SPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG 1110
++++ + IK+W+ + L+ S + D +SKL L + S+LL +S +G
Sbjct: 77 GELLLSGSSDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPDGNSILLASSSLDG 134
Query: 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWD 1169
+++W D +++GH V + + L + + +I LWD
Sbjct: 135 TVKLW------DLSTPGKLIRTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWD 184
Query: 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1229
L + + + +S+L S G +A+G DG++RL+D+ T +L + H+
Sbjct: 185 LRTGKPL--STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Query: 1230 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289
V SF P D + + S S G I+ D+R+ T+ H S+ ++A
Sbjct: 243 DSVVS----SFSP--DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 1290 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADA 1348
++ASGS+ ++++ LE +L + + G V+ L+F P +L++ GS D
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSL-----TLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351
Query: 1349 CVSI 1352
+ +
Sbjct: 352 TIRL 355
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSIS 1189
++GH GV C V + L +I +WDLE + + D + S
Sbjct: 5 LKGHTGGVTC----VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1190 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249
A G LA+G D ++RL+D+ T + V + HT V ++F P D +
Sbjct: 61 A------DGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTS---YVSSVAFSP--DGRIL 108
Query: 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1309
S+S+ I+ D+ K T+ H ++++A +AS S IK++ L
Sbjct: 109 SSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 1310 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352
+ H G VN + F P L + S+D + +
Sbjct: 168 KCVATLTGH-------TGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.5 bits (210), Expect = 5e-17
Identities = 83/373 (22%), Positives = 145/373 (38%), Gaps = 41/373 (10%)
Query: 992 DDTEEILARREEREKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFEKGTKTALLQP 1051
D+ E+++ E ++ +A NS LA S L+ + WD L
Sbjct: 95 DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH 154
Query: 1052 --------FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1099
FSP + + + IK+W+ L++ H P ++ +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA----FSPDG 210
Query: 1100 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1159
L+ S +G IR+W D S++ GH +VV + L +
Sbjct: 211 GLLIASGSSDGTIRLW------DLSTGKLLRSTLSGHS-----DSVVSSFSPDGSLLASG 259
Query: 1160 GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1219
+I LWDL ++ + S S+ ++ S G LA+G DG+VRL+D+ T
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPD-GKLLASGSSDGTVRLWDLETGK 317
Query: 1220 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1279
+ S+ V +SF P + S G I+ D+R K T++ H +
Sbjct: 318 --LLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRLWDLRTGK-PLKTLEGH-SN 372
Query: 1280 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339
+ +++ +++SGS ++++ L L H S V L F P
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS-------RVTSLDFSPDGK 425
Query: 1340 LLAAGSADACVSI 1352
LA+GS+D + +
Sbjct: 426 SLASGSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (162), Expect = 3e-11
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 36/298 (12%)
Query: 1024 LAVSKLNNPIACWDTRFEKGTKTALLQP-------FSP----IVVAADENERIKIWNYE- 1071
+ S L+ I WD R K T FSP ++ + + I++W+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 1072 EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1131
L ++ H D +S D SLL S +G IR+W D + L+
Sbjct: 231 GKLLRSTLSGH--SDSVVSSFSP----DGSLLASGSSDGTIRLW---DLRSSSSLL---R 278
Query: 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1191
++ GH V V + L + ++ LWDLE + + + + +S+L
Sbjct: 279 TLSGHSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 1192 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1251
+ S ++ G DG++RL+D+RT L V+ +SF P D + S
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSVSFSP--DGRVVSS 387
Query: 1252 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1309
S G ++ D+ +D H +++L +ASGS+ I+++ L+
Sbjct: 388 GSTDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC 1331
T+ H G ++ +A ++A+GS IKV+ LE +L H G V
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-------TGPVRD 56
Query: 1332 LTFHPYQVLLAAGSADACVSI 1352
+ LA+GS+D + +
Sbjct: 57 VAASADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293
V ++F P D + + S G I+ D+ + T+ H G + +A +A
Sbjct: 11 GVTCVAFSP--DGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 1294 SGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353
SGS+ + I+++ LE + H S V+ + F P +L++ S D + +
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTS-------YVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 1354 S 1354
Sbjct: 121 D 121
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1354 | |||
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| PF14538 | 154 | Raptor_N: Raptor N-terminal CASPase like domain | 100.0 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.87 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.86 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.82 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.8 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.8 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.79 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.77 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.75 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.72 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.72 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.71 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.64 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.61 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.6 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.59 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.56 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.52 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.48 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.47 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.41 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.41 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.34 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.32 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.31 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.28 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.28 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.28 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.27 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.27 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.25 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.25 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.18 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.17 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.15 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.14 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.14 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.11 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.1 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.09 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.07 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.05 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.04 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.02 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.02 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.01 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.99 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.97 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.96 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.95 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.94 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.94 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.92 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.91 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.9 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.9 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.85 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.84 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.82 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.82 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.79 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.79 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.77 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.76 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.71 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.71 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.71 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.7 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.63 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.61 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.61 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.61 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.6 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.59 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.59 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.56 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.55 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.51 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.5 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.5 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.45 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.44 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.4 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.36 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.32 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.32 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.3 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.27 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.25 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.21 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.18 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.15 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.15 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.13 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.09 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.02 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.98 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.91 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.9 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.9 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.88 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.88 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.87 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.82 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.81 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.8 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.79 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.79 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.78 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.75 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.73 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.64 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.61 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.6 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.59 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.54 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.54 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.53 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.49 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.45 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.41 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.39 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.38 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.37 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.36 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.33 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.32 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.32 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.3 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.3 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.26 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.2 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.14 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.03 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.97 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.96 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.93 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.84 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.84 | |
| PF00656 | 248 | Peptidase_C14: Caspase domain; InterPro: IPR011600 | 96.83 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.8 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.71 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.66 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.65 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.56 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.55 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.55 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.53 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.45 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.44 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.34 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.28 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.25 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 96.23 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.22 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.19 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.15 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.15 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.99 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.97 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.85 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.83 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.81 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.8 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.78 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 95.73 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 95.7 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.68 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.66 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.65 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.63 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.46 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.44 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 95.38 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.26 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.24 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.24 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.23 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.19 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.07 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.88 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.77 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.65 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.63 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.55 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.54 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.45 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 94.41 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.38 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 94.38 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.3 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.26 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.24 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.21 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.12 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 94.12 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.11 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.07 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.01 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 93.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.91 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.9 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 93.9 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.87 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.83 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 93.8 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 93.74 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.56 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.32 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.24 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.17 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 93.02 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.94 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.86 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.77 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 92.76 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.45 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 92.36 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 92.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.84 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 91.79 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.72 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.66 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.64 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.57 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 91.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 91.46 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 91.34 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 91.33 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.23 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 91.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.02 | |
| PRK10115 | 686 | protease 2; Provisional | 90.55 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 90.42 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 90.41 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.38 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 90.27 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 90.2 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 90.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 89.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.82 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.71 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 89.65 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.62 | |
| smart00115 | 241 | CASc Caspase, interleukin-1 beta converting enzyme | 89.59 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.49 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 89.1 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.7 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.51 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 88.5 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.35 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.34 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.16 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.87 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 87.6 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.57 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.08 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.87 | |
| cd00032 | 243 | CASc Caspase, interleukin-1 beta converting enzyme | 86.84 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 86.65 | |
| PLN02153 | 341 | epithiospecifier protein | 86.36 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 86.29 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 85.99 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 85.54 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 85.29 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.1 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 85.09 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 84.98 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.42 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 84.4 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 84.0 |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-293 Score=2563.94 Aligned_cols=1313 Identities=57% Similarity=0.920 Sum_probs=1099.2
Q ss_pred cccchhhhcccccc--cccCcccC-CCCCCCCCCccCCCCcCCCCcCCCCccccccccccccccccccc--ccccccccc
Q 000681 3 LGDLMASRFSQSAV--VSNHLNDD-CGSAHGDVDLRRDSDTASSSYTNNASVTTITTTTTTSLAYLPQT--VVLCELRHE 77 (1354)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rh~ 77 (1354)
+||+|.|+.+++|+ |.||.+++ +.++|+|...+.+.... . ..++++...+...++++++. +||+|+||.
T Consensus 1 ~~e~~~s~~~~~s~~~v~~~~~~~~~~~~~~d~~~~~~~~~~---~---~~~~~e~~~n~~~~~~l~~~~~ly~~d~Rh~ 74 (1387)
T KOG1517|consen 1 MGELSGSSPSSSSVQEVANHKVDNGADSSHDDTRSRLGDSIS---I---EQGFEEQYSNAQSLASLPQTFVLYLCDPRHD 74 (1387)
T ss_pred CCccccCCCCccchhhhccccccccccccccchhhhcccccc---c---ccchhhhhhhHHHHHhCcceEEEEecccccc
Confidence 58999999988877 89999854 44556665544332222 1 23467777888999999987 566999999
Q ss_pred cccCCCCCCCCCCCC--CCccccCCccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHH
Q 000681 78 AFEASTPSGPSDSGL--VSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155 (1354)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~ 155 (1354)
+ +| |++.+++.. +++|||||||||++||||||||||||||||+|++||||+||||||+++++.||+|+||||||.
T Consensus 75 ~--~g-pi~~~~~~~~~~~~wR~keRmkT~svAlvlCLnigVDPPdvik~~pcaRle~WiDP~s~~~~KA~e~IG~nlq~ 151 (1387)
T KOG1517|consen 75 E--DG-PIETEDIVIEEIPDWRMKERMKTASVALVLCLNIGVDPPDVIKISPCARLECWIDPFSMGPPKALEAIGKNLQR 151 (1387)
T ss_pred c--cC-CCchhhcccccCCCchHHHHhhhhHhHHhhhhhcCcCCccccCCCcchhhhhccCccccCChHHHHHHHHHHHH
Confidence 9 56 676655544 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccceeccCCCHHHHHHHHHHhhccCCCceEEEEEcCCCCCCCCCCceEEEecCCCCeeeecchHhhhhhcCC
Q 000681 156 QYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKT 235 (1354)
Q Consensus 156 qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~ 235 (1354)
|||+||+|+|||+++||++|||||+|++|||+||+||||||||||||||||+|||||||||+||||||+||+|||+|||+
T Consensus 152 qYE~wqprtRYK~~lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~a 231 (1387)
T KOG1517|consen 152 QYERWQPRTRYKVCLDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGA 231 (1387)
T ss_pred HHHhhChhhhhhhccCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCchhhHHHHH---Hhhccc----------CCCCCCCCCcceEEEEecCCCCCCCCCCCCCchhhhhcccchH
Q 000681 236 PSIYVFDCSAAGMIVNAF---IELHDW----------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1354)
Q Consensus 236 p~~~v~dc~~ag~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftscl~tP~ 302 (1354)
|+||||||++||+||.+| .|.+|+ +.++..+.|+|||+||||+++|+|||+|+||||+|||||||||
T Consensus 232 P~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTsCLTTPI 311 (1387)
T KOG1517|consen 232 PTIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTSCLTTPI 311 (1387)
T ss_pred CeEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhhhhcCch
Confidence 999999999999887776 555542 2355678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhhhccCCCCcCcccCchhhHHHHHHHHHHHHhhcCCCHHHHHHhhhhhhHHHHHHHHHHHH
Q 000681 303 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLA 382 (1354)
Q Consensus 303 ~~al~~~~~~~~~~~~~~~~~~~~ipg~~~~~~~~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d~~va~lfrnflla 382 (1354)
+|||+||++|++++..++.++|++|||+++|||||||||||||||||||||||+|||++||||||||||||+||||||||
T Consensus 312 ~isl~w~~~~s~l~~~i~~~lidkIPGrlnDRRT~LGELNWIFTAITDTIAWn~lPR~LFQrLFRQDLLvAsLFRNFLLA 391 (1387)
T KOG1517|consen 312 EISLKWFLMQSPLKDFIDESLIDKIPGRLNDRRTPLGELNWIFTAITDTIAWNSLPRELFQRLFRQDLLVASLFRNFLLA 391 (1387)
T ss_pred hHHHHHHHhhchhhhhhhhHHHhhCCccccccccccchhceeeeeeeceehhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcccccCCCCCCCCCCcchhhHHHHHHHHHhcCccccCCC-CCCcCC-CcchHHHHhhHHHHhcCCCCCCCCC
Q 000681 383 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADP-NAEYQP-SPFFSEQLTAFEVWLDHGSEHKKPP 460 (1354)
Q Consensus 383 ~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~~l~~~~~~~-~~~~~~-~~ff~~qLtafe~~L~~g~~~~~~p 460 (1354)
||||++|||||||.|+||+|++||||++||+|+|+||+|||.++.++ +++|++ ++||+|||||||+||++|++.++||
T Consensus 392 eRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PP 471 (1387)
T KOG1517|consen 392 ERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPP 471 (1387)
T ss_pred HHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCCh
Confidence 99999999999999999999999999999999999999999777766 699999 6999999999999999999999999
Q ss_pred cchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhh
Q 000681 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1354)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~ 540 (1354)
+||||||||||||+||+|||+||+||||+|||||++||++||||||||||||++.|||++||||||||||+||+||.||+
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhhhhhcCC-CCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000681 541 KDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1354)
Q Consensus 541 k~~~~~~f~~~L~~-~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1354)
|++||+||+++|++ ...++|||+|+|||||+|+++|+.||..|++.+++.+|+++|++ ++.|++|||+|||||
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd------~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND------DPEPLLRQWLCICLG 625 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC------CccHHHHHHHHHHHH
Confidence 99999999999998 55556999999999999999999999999999999999999993 358999999999999
Q ss_pred HhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCC-CCCC-hHHHHHHHHHHH---
Q 000681 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGD-EECD-DDEKIRAEISII--- 694 (1354)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~-~~~~-~~~~~~~e~~~~--- 694 (1354)
+||++|++|+|++++.++|++|+.+|.|++||||||+|||||+|++...+.|.....+- +... +++++.+|..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999987654443211110 1111 234456777777
Q ss_pred HHHhhhccCCChhhhHHHHHHHHHHHHhhhhhHHHHHHhhcCcccccccCCCCccccccCCCCCCcc--ccccCCccccc
Q 000681 695 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIV--SSQIGPLTRVG 772 (1354)
Q Consensus 695 ~~ll~~~~D~sp~VR~e~~~~l~~~v~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 772 (1354)
+.++.+++|+||+||+|+++++++++..|..+|..+|.++++++....-.+.... ......++. .+.+.+.|..+
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE~~~~~~---~~s~~~~~~~~~si~~~~~~s~ 782 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLEKSLPNK---AQSSHKFSDSGSSIVATTWMSL 782 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhhccCCcc---ccccccccccccceeeeechhh
Confidence 5889999999999999999999999999999999999999988654332221110 001111111 12222222211
Q ss_pred -----ccc----ccccCCcc-CCCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCccccCCCCCCCCchHHHHHHHHH
Q 000681 773 -----NEA----VVRDGRVS-TSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMC 842 (1354)
Q Consensus 773 -----~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~ 842 (1354)
.++ ....+..+ +...++..+.+.|.+++.++......+.......++.+. .++...+++|.+..++.+
T Consensus 783 L~rs~d~s~~~a~aa~~~i~~~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~--~~~~~~~at~s~~v~~~~ 860 (1387)
T KOG1517|consen 783 LIRSLDPSLENAEAAEGIISYSLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVH--QPRSLDNATYSQSVKSML 860 (1387)
T ss_pred eeeccCcccchhHhhcCeeeccccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccC--CCccccchHHHHHHHHhH
Confidence 111 01111111 111222333444556666655555555444433333221 233466899999999999
Q ss_pred hhcCCCChhhhhhhhhhhhhhhcccccccccccCCCCCCCCCCCCCCCCCCCCCcccccccccCCC----------CCCC
Q 000681 843 TLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNG----------GHLP 912 (1354)
Q Consensus 843 ~L~~dp~~~v~~~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~----------~~~~ 912 (1354)
.+++||+|+|+.+++++++.+..|+....+++..... .+.+ +..++...++.++.++.++.. ++.+
T Consensus 861 ~~~k~P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~---g~~~-~~~~~~~~gL~~s~S~~d~~a~s~~~s~~~~~~~s 936 (1387)
T KOG1517|consen 861 RLAKDPNPRVSSLGRRVLSLIGKEQRVADPSKVSGPV---GEAA-SSASTPLQGLALSSSGSDMHASSKDDSSLTDENKS 936 (1387)
T ss_pred hhhcCCCccccchhhhhhhhhchhccccCcccccCCC---Cccc-ccccchhhhcccccCCCCCCcCCcccccccccccC
Confidence 9999999999999999999998888765554432211 0000 111223344555555544422 2333
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC-CCceeeecccccccccCcCC
Q 000681 913 LKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLP-PSTIYNWSCGHFSKPLLTAA 991 (1354)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~S~f~~ws~~~F~~P~~~~~ 991 (1354)
...++++..|+...++.|.++.+...+.|+....|+.|.+.+.....+ .++..+| ...||+||++||++|+|+..
T Consensus 937 ~n~et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~~~~~l~~p~~~a~~----~e~S~l~~~~~f~~Ws~~yF~eP~m~~~ 1012 (1387)
T KOG1517|consen 937 LNDETPPSGPPGTNGLAGARRVCPLAFRPRLEKHPDRGLADPLDGASG----SERSLLPTVTIFYDWSRKYFTEPQLKGA 1012 (1387)
T ss_pred cccCCCCCCCCCccccccCCcCCChhcCchhccCCCccccCccccccc----cccccccceeeechhhHhhhcccccCCc
Confidence 445566777777778888888887888877766665444444332222 2245677 44589999999999999999
Q ss_pred CcchHHHHHHHHH--HHHHHhhhheeecCCCCceEEEeeCCCcEEEEeCCCC----CCeEEEEEcCCCCEEEEEECCCcE
Q 000681 992 DDTEEILARREER--EKFALEHIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----KGTKTALLQPFSPIVVAADENERI 1065 (1354)
Q Consensus 992 e~~e~~~~~r~~r--~~~~~e~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----~~I~sL~fspdg~~Latgs~Dg~I 1065 (1354)
+++|+++.++++| ++.++|.+..++.+... ....+..|..||.+.. .+...+.|||..+.++++++...|
T Consensus 1013 e~dE~~s~~~~~r~wrr~R~e~i~kr~~~~~~----~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i 1088 (1387)
T KOG1517|consen 1013 EADEEGSEEREERLWRRNRNEKIIKRQASQEI----QKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERI 1088 (1387)
T ss_pred cccchhhhHHHHHHHHHhhHHHHHHhhcccce----eeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceE
Confidence 9999998875444 66666666555443211 1223345788998764 458999999999999999999999
Q ss_pred EEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC-CcceEEeeeecccCCCCCcccce
Q 000681 1066 KIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSN 1144 (1354)
Q Consensus 1066 ~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~si~ 1144 (1354)
+|||++.++.+..|.++.++...|++++++|+.|..++++|+.||.||||+.+... ++.+++++|..+.++...-.+.+
T Consensus 1089 ~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~ 1168 (1387)
T KOG1517|consen 1089 RVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG 1168 (1387)
T ss_pred EEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999998765 78999999999999998888888
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCe--ee
Q 000681 1145 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LV 1222 (1354)
Q Consensus 1145 ~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~--~~ 1222 (1354)
++++|.|..++|+++|+...|+|||..++. ++..++...+..|++++.....|+++++|+.||+|++||.|.... .+
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 889999999999999999999999999999 999999999999999988888899999999999999999997653 55
Q ss_pred EeecCCCCCCCC--eEEEEEecCCCCCEEEEEECCCcEEEEeCCC-CCccEEEEecCC--C-CeEEEEEcCCCCEEEEEe
Q 000681 1223 CSTRPHTQQVER--VVGISFQPGLDPAKIVSASQAGDIQFLDIRN-HKDAYLTIDAHR--G-SLSALAVHRHAPIIASGS 1296 (1354)
Q Consensus 1223 ~~~~~~~~h~~~--I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~-~~~~v~~l~~h~--~-~VtsLafspdg~~Lasgs 1296 (1354)
+.++. |+.. |..+.+.+. +-..|++|+.||.|++||+|+ .++...++..|. | .++++.+|++.+++|+|+
T Consensus 1248 ~~~R~---h~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1248 CVYRE---HNDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred eeecc---cCCcccceeEEeecC-CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 55544 4455 999999997 344799999999999999998 334444555553 4 599999999999999999
Q ss_pred CCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1297 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1297 ~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
. +.|+||++.|+.+..+++ +.+|++++.+.+.|++|||+..+||+|+.|.+|.||.
T Consensus 1324 ~-q~ikIy~~~G~~l~~~k~-n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1324 A-QLIKIYSLSGEQLNIIKY-NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred c-ceEEEEecChhhhccccc-CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 8 999999999999999999 9999999999999999999999999999999999984
|
|
| >PF14538 Raptor_N: Raptor N-terminal CASPase like domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=501.31 Aligned_cols=153 Identities=75% Similarity=1.325 Sum_probs=152.1
Q ss_pred ccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHH
Q 000681 101 RMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKL 180 (1354)
Q Consensus 101 ~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~ 180 (1354)
||||+++|||||||||+||||++|++||||+|||+||+.++++|++++||++||+|||+|++|+|||+++||++||+|++
T Consensus 1 ~~kt~~~~l~lcln~g~dppd~~~~~~~ar~~cW~dp~~~~~~~~~~~I~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~ 80 (154)
T PF14538_consen 1 RMKTVSVALVLCLNIGVDPPDVVKTSPCARLECWIDPSNMPPSKASEEIGKNLQSQYESWQPRARYKQSLDPTVEDLKRL 80 (154)
T ss_pred CceeeEEEEEEeecCCCCCCCccccCCCceEEEecCCcccCchhHHHHHHHHHHHHHHHhCccCcEEEecCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCCCCCCCCCCceEEEecCCCCeeeecchHhhhhhcCCCeEEEEeCCchhhHHHHH
Q 000681 181 CNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAF 253 (1354)
Q Consensus 181 ~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~~l~~~~~~p~~~v~dc~~ag~~~~~~ 253 (1354)
|.++||+|++|||||||||||||+||++|||||||++||||||+||+||++|+|+|+||||||+|||.||++|
T Consensus 81 ~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~AG~il~~f 153 (154)
T PF14538_consen 81 CQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSNAGSILNAF 153 (154)
T ss_pred HHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCcHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=561.28 Aligned_cols=803 Identities=18% Similarity=0.180 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHhhhccCcccccCCCCCCCCCCcchhhHHHHHHHHHhcCccccCCCCCCcCCCcchHHHHhhHHHHhcCC
Q 000681 374 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHG 453 (1354)
Q Consensus 374 ~lfrnflla~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~~l~~~~~~~~~~~~~~~ff~~qLtafe~~L~~g 453 (1354)
..|..=|=|=-+-=.||..--.=| ++..++|...|+|.+++ ++|..+.+|||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PP-----------eQLPiVLQVLLSQvHRl---------------RAL~LL~RFLDlG 501 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPP-----------EQLPIVLQVLLSQVHRL---------------RALVLLARFLDLG 501 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCCh-----------HhcchHHHHHHHHHHHH---------------HHHHHHHHHhccc
Confidence 445555555555555554321111 67788999999999998 8999999999999
Q ss_pred CCCCCC---CcchhhHHHHhhchhhhhHHHH--HHHHHhcCCHHHHHHHHhcCChhHHHHhhcc-C--chhhhhHHHHHH
Q 000681 454 SEHKKP---PEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQT-T--TPELRQILVFIW 525 (1354)
Q Consensus 454 ~~~~~~---p~~lP~vLq~LlS~~~rlral~--ll~~fld~g~wAv~lal~~gifpyvlklL~s-~--~~elr~~~~FIw 525 (1354)
+|++.. .||||||||||||++.+||+++ +|+|.|+++|.|+...++.+++-||++.|+. + .+|+|+|+|||+
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL 581 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHH
Confidence 999766 6999999999999999999999 6777777777777777899999999999986 3 469999999999
Q ss_pred HHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCC
Q 000681 526 TKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQ 605 (1354)
Q Consensus 526 a~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~ 605 (1354)
|.|++.++.||.+|+..+++.+|+.+|++.. .|++|||+|+||++||+||+.+||.|.+.++|++++.+|. |
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls-------D 653 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS-------D 653 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc-------C
Confidence 9999999999999999999999999999864 4899999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhhcc----chHHhHhh------------cccCch---hhHhhhhcCCChHHHHHHHHHHhhcccc
Q 000681 606 TEPLFLQWLCLCLGKLWED----FTEAQTIG------------RRADAP---AIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1354)
Q Consensus 606 ~~P~vR~w~~l~Lg~l~~~----~~~~~~~~------------~~~~~~---~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 666 (1354)
++||||+++++|||+|+++ +++..... ++..+. +.++.+++|++|+||+|++++|++|+-.
T Consensus 654 ~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 654 PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999987 45443332 444444 4788899999999999999999999955
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHH---------------------HHHHHHHhhhccCCChhhhHHHHHHHHHHHHh---
Q 000681 667 GFDSCRDGVEGDEECDDDEKIRAE---------------------ISIIRSLLTVVSDGSPLVRAEVAVALARFAFG--- 722 (1354)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e---------------------~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~--- 722 (1354)
+...+... ..++...+....| ..+.+.+|....|+|-.+..+.--.+++....
T Consensus 734 ~~~~~~~v---a~n~~~~~~~~lE~~~~~~~~s~~~~~~~~~si~~~~~~s~L~rs~d~s~~~a~aa~~~i~~~~~~~~~ 810 (1387)
T KOG1517|consen 734 YVSHLKVV---AGNYLLPESSSLEKSLPNKAQSSHKFSDSGSSIVATTWMSLLIRSLDPSLENAEAAEGIISYSLQGMST 810 (1387)
T ss_pred hHHHhHHH---hhhhcccchhhhhccCCccccccccccccccceeeeechhheeeccCcccchhHhhcCeeeccccccch
Confidence 54332210 0000000000011 11234456666676655422221111111100
Q ss_pred ---hhhhH------HHHHHhhcCc-ccccccCCCCcccccc------CCCCCC-ccccccCCcccc-cc----ccccccC
Q 000681 723 ---HKQHL------KSIAAAYSKP-QSNSLLGSLPSLAHIK------TTGSGS-IVSSQIGPLTRV-GN----EAVVRDG 780 (1354)
Q Consensus 723 ---~~~~f------~~~a~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~-l~----~~~~~~~ 780 (1354)
..+.| .......+.+ .+......+..+.+.. ...... .....+...+.- +. +....+.
T Consensus 811 ~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~~~~~~~~at~s~~v~~~~~~~k~P~prV~~~g~~v~~~~~~eq~~a~p 890 (1387)
T KOG1517|consen 811 SSELGGSFLADDSRLLSDSGNIHKTVRNGAVHQPRSLDNATYSQSVKSMLRLAKDPNPRVSSLGRRVLSLIGKEQRVADP 890 (1387)
T ss_pred hhhhcCCcccccHHHHHhHHHHHHHhhccccCCCccccchHHHHHHHHhHhhhcCCCccccchhhhhhhhhchhccccCc
Confidence 00000 0000000000 0000000000000000 000000 000000000000 00 0000000
Q ss_pred CccCCCCC--ccCCCCCCCCCCCCCCCCCCCCcccCCCCCCccccCCCCCCCCchHHHHHHHHHhhcCCCChhhhhhhhh
Q 000681 781 RVSTSSPL--ANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRR 858 (1354)
Q Consensus 781 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~l~~L~~dp~~~v~~~a~~ 858 (1354)
+..+..+. +.....+-..+..+++. +-+...+.+. + ++... ...
T Consensus 891 skv~~~~g~~~~~~~~~~~gL~~s~S~----~d~~a~s~~~------------s--------~~~~~----------~~s 936 (1387)
T KOG1517|consen 891 SKVSGPVGEAASSASTPLQGLALSSSG----SDMHASSKDD------------S--------SLTDE----------NKS 936 (1387)
T ss_pred ccccCCCCcccccccchhhhcccccCC----CCCCcCCccc------------c--------ccccc----------ccC
Confidence 00000000 00000000000000000 0000000000 0 00000 000
Q ss_pred hhhhhhcccccccccccCCCCCCCCCCCCCCCCC-CCCCccccccccc--CCCCCCCCCCCCCCCCCCCC-------CCC
Q 000681 859 VLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTP-SLAGLVRSSSWFD--MNGGHLPLKFRTPPVSPPRQ-------SFL 928 (1354)
Q Consensus 859 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~s~~~--~~~~~~~~~~~~~~~~~~~~-------~~~ 928 (1354)
+.+ ..+++.+|.+ ...|..|..+... ...+. +.... ..|.. +++
T Consensus 937 ~n~---------------------et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~----~~~~l-~~p~~~a~~~e~S~l 990 (1387)
T KOG1517|consen 937 LND---------------------ETPPSGPPGTNGLAGARRVCPLAFRPRLEKH----PDRGL-ADPLDGASGSERSLL 990 (1387)
T ss_pred ccc---------------------CCCCCCCCCccccccCCcCCChhcCchhccC----CCccc-cCccccccccccccc
Confidence 000 0000000000 0001111111000 00000 00000 00000 111
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCceeeecccccccccCcCCCcchHHH-----HHH--
Q 000681 929 PGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL-----ARR-- 1001 (1354)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~S~f~~ws~~~F~~P~~~~~e~~e~~~-----~~r-- 1001 (1354)
+. ...++.|+.++|.+|+ |...+..++++. +|..+.+++-..+.....+.++ ...
T Consensus 991 ~~--~~~f~~Ws~~yF~eP~--m~~~e~dE~~s~--------------~~~~r~wrr~R~e~i~kr~~~~~~~~lst~~i 1052 (1387)
T KOG1517|consen 991 PT--VTIFYDWSRKYFTEPQ--LKGAEADEEGSE--------------EREERLWRRNRNEKIIKRQASQEIQKLSTNPI 1052 (1387)
T ss_pred cc--eeeechhhHhhhcccc--cCCccccchhhh--------------HHHHHHHHHhhHHHHHHhhcccceeeeccccc
Confidence 10 1115678999999997 444444443322 2222222222222111111110 001
Q ss_pred HHHHHHHHhh----hheeecCCCCceEEEeeCCCcEEEEeCCCC-------------CCeEEEEEcC--CCCEEEEEECC
Q 000681 1002 EEREKFALEH----IAKCQRSCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQP--FSPIVVAADEN 1062 (1354)
Q Consensus 1002 ~~r~~~~~e~----i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fsp--dg~~Latgs~D 1062 (1354)
..|+.+..+. -+...+.+.+..+++++....|.+||++.+ ..|+.+.+-. |..++++|+.|
T Consensus 1053 ~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1053 GNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred cchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC
Confidence 3444444333 223344555566888888889999999876 7799999876 44589999999
Q ss_pred CcEEEEE-CCC----CceEEEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc-c
Q 000681 1063 ERIKIWN-YEE----DTLLNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-Q 1134 (1354)
Q Consensus 1063 g~I~IWd-~~t----g~~l~~~~~h~--~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~ 1134 (1354)
|.|+||+ +.+ .+.+..+.+-. .++..=+.+.+.|.+..++|+++|+-..|||||... ...+ ..+ .
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~----E~~~---~diP~ 1205 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK----EQVV---ADIPY 1205 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc----ceeE---eeccc
Confidence 9999994 333 24555544321 111222334555578888888888899999999955 2222 111 1
Q ss_pred CCCCCcccceeEEEEec-CCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCC-CeEEEEEEcCCC-CEEEEEECCCe
Q 000681 1135 GHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDC-SISALTASQVHG-GQLAAGFVDGS 1209 (1354)
Q Consensus 1135 ~h~~~V~si~~~v~~sp-~~~~Lla~g~Dg~I~VWDl~t~~--~~v~~i~~~~~~-~Vtsl~~~s~~g-~~L~sgs~DGs 1209 (1354)
+....+++ +.-+. .++.+++|..||.|++||.+... ..+..++.|... +|..+ .+++.| ..+++|+.||.
T Consensus 1206 ~s~t~vTa----LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~-slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTA----LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL-SLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCCcccee----ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE-EeecCCCcceeeeccCCe
Confidence 22223333 33333 35777777899999999988643 156666666543 37888 445544 46999999999
Q ss_pred EEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC-------CCCeE
Q 000681 1210 VRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-------RGSLS 1281 (1354)
Q Consensus 1210 VrIwDlr~~~-~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-------~~~Vt 1281 (1354)
|++||+|... ........+....+.++++..|++ ..++++|+. +.|+||++... .+..++.+ .+.++
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h--apiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH--APIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccC--CCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcc
Confidence 9999999842 111111121111245999999999 999999999 99999999754 55555443 35789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
|++|||+..++|+|+.|.+|.||..+.
T Consensus 1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eeeecchhHhhhhccCCceEEEeecCC
Confidence 999999999999999999999998554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=338.94 Aligned_cols=313 Identities=19% Similarity=0.320 Sum_probs=272.4
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceE-EEe
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSF 1079 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l-~~~ 1079 (1354)
.+...++++++..+++++.|.++++||..+. ..|.|++|+|||+.||+|+.||.|++||.++|+.+ ..+
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l 196 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL 196 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc
Confidence 3667899999999999999999999999876 67999999999999999999999999999988655 568
Q ss_pred eCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeE
Q 000681 1080 DNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~---s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
.+|. ..|++++|.+ .+..++|++++.||.|+|||+.. +... ..+.+|+.+|+| +.|- ..++|
T Consensus 197 ~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~-----~~lsgHT~~VTC----vrwG-G~gli 261 (480)
T KOG0271|consen 197 RGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCV-----RTLSGHTASVTC----VRWG-GEGLI 261 (480)
T ss_pred cCcc---cceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEE-----EEeccCccceEE----EEEc-CCceE
Confidence 9999 9999999943 24678999999999999999854 3333 458999999999 8886 45789
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEE----------cCC-------------------------CCEE
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS----------QVH-------------------------GGQL 1201 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~----------s~~-------------------------g~~L 1201 (1354)
++|+.|++|++|+...+. +.+.+++|... |+.++.. .+. +..+
T Consensus 262 ySgS~DrtIkvw~a~dG~-~~r~lkGHahw-vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGK-LCRELKGHAHW-VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EecCCCceEEEEEccchh-HHHhhcccchh-eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 999999999999999999 99999998776 8888432 122 2359
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
++|+.|+++.+|+....++.+. ...+|..-|+.+.|+|+ +++++++|.|..|++||.+++ +.+.+|++|-+.|.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~---rmtgHq~lVn~V~fSPd--~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VY 413 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPIT---RMTGHQALVNHVSFSPD--GRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVY 413 (480)
T ss_pred EEecCCceEEEecccccccchh---hhhchhhheeeEEECCC--ccEEEEeecccceeeeeCCCc-chhhhhhhccceeE
Confidence 9999999999999876654444 44578899999999999 999999999999999999999 69999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCceEE-EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFSLEGEQLG-TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~-~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.++|+.|.++|++||.|.++++|++..+.+. .+.+ |. ..|.++.|+|||..+++|+.|..+++|.
T Consensus 414 qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~-------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HA-------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CC-------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999997655544 4444 54 8999999999999999999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=327.50 Aligned_cols=282 Identities=17% Similarity=0.311 Sum_probs=253.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
+.|-|+.|+|+|..|++|+.|.++|+||..+...+.+.++|. ..|.+++| +|||..|++|+.||+|++||..+
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~---~WVlcvaw--sPDgk~iASG~~dg~I~lwdpkt-- 188 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK---NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKT-- 188 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc---cEEEEEEE--CCCcchhhccccCCeEEEecCCC--
Confidence 789999999999999999999999999999999999999999 99999999 89999999999999999999866
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEec-----CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-----QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-----~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
+.+ .. +.+.+|...|.+ ++|.| ..+.+++++.||.|+|||+..+. ++..+.+|... |+|+ .+-
T Consensus 189 g~~-~g---~~l~gH~K~It~----Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~-VTCv-rwG- 256 (480)
T KOG0271|consen 189 GQQ-IG---RALRGHKKWITA----LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTAS-VTCV-RWG- 256 (480)
T ss_pred CCc-cc---ccccCcccceeE----EeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccc-eEEE-EEc-
Confidence 332 22 568999999998 88875 46788889999999999999999 99999999887 9999 442
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---------------------------------
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--------------------------------- 1243 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~--------------------------------- 1243 (1354)
...++++|+.|++|++|+...+. +.+ .++||..+|+.++.+-+
T Consensus 257 G~gliySgS~DrtIkvw~a~dG~-~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 257 GEGLIYSGSQDRTIKVWRALDGK-LCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred CCceEEecCCCceEEEEEccchh-HHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 45799999999999999998876 333 55688899999988721
Q ss_pred -CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCcc
Q 000681 1244 -LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSF 1321 (1354)
Q Consensus 1244 -~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~f 1321 (1354)
.++..+++|+.|+++.+|+-...++++....+|..-|+.+.|+||+++||++|.|..|++|+ .+|+.+.++++ |-
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv-- 409 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-HV-- 409 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-cc--
Confidence 12346999999999999998877779999999999999999999999999999999999999 78999999998 65
Q ss_pred ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1322 MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.|..++|+.|.++|++|+.|.+++||+
T Consensus 410 -----~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 410 -----AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred -----ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 8999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=332.70 Aligned_cols=281 Identities=20% Similarity=0.307 Sum_probs=255.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
.+|..+.|+.|+++|+||+.+|.++||+..+...+.+|.+|. +.|.++.|.|-.++..++||+.||++++|++..+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 689999999999999999999999999999999999999999 9999999975335779999999999999999652
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
+.+..+.+|...|.. ++|+|+|.+|.+++.|.+-++||++++. .+....+|... |.++ .++++|..+
T Consensus 252 ------~~l~~l~gH~~RVs~----VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~-v~~i-af~~DGSL~ 318 (459)
T KOG0272|consen 252 ------TPLQDLEGHLARVSR----VAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKG-VFSI-AFQPDGSLA 318 (459)
T ss_pred ------cchhhhhcchhhhee----eeecCCCceeeecccccchhhcccccch-hhHhhcccccc-ccee-EecCCCcee
Confidence 223668999999988 9999999999999999999999999998 66666677665 9999 788999999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
++|+.|..-||||+|++.++. .+.+|...|.+|.|+|+ |..|+|||.|++++|||++.. ..+.++.+|..-|+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im----~L~gH~k~I~~V~fsPN--Gy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIM----FLAGHIKEILSVAFSPN--GYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVS 391 (459)
T ss_pred eccCccchhheeecccCcEEE----EecccccceeeEeECCC--ceEEeecCCCCcEEEeeeccc-ccceecccccchhh
Confidence 999999999999999999544 33478899999999999 999999999999999999988 68999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1282 ALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1282 sLafsp-dg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+.|+| .|.+|+|++.|++++||. .+..+++++.+ |+ +.|.+++.++++..+++++.|.++++|.
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He-------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HE-------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Cc-------cceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 788999999999999999 66788888888 76 8999999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=289.14 Aligned_cols=284 Identities=17% Similarity=0.285 Sum_probs=252.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|.++.|++|.++|++++.||.+.|||..+...++.+.... ..|...+| +|.++++++|+-|....||++.+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~- 129 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTR- 129 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEE--CCCCCeEEecCcCceeEEEecccc-
Confidence 789999999999999999999999999999999998888776 89999999 799999999999999999999753
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC-CCCE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGGQ 1200 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~-~g~~ 1200 (1354)
.....+..-+.+.+|...+.+ +.|- ++++|++++.|.+..+||+++++ .+..+.+|... |.++ ..+| +++.
T Consensus 130 d~~g~~~v~r~l~gHtgylSc----C~f~-dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD-V~sl-sl~p~~~nt 201 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSC----CRFL-DDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD-VMSL-SLSPSDGNT 201 (343)
T ss_pred cccccceeeeeecCccceeEE----EEEc-CCCceEecCCCceEEEEEcccce-EEEEecCCccc-EEEE-ecCCCCCCe
Confidence 112222223678999999988 5665 58999999999999999999999 99999999887 9999 5555 9999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC--CC
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--RG 1278 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h--~~ 1278 (1354)
|++|+-|+..++||+|.+. .++ .+.+|...|++|.|.|+ |.-|++|+.|++.++||+|.. ..+..+... ..
T Consensus 202 FvSg~cD~~aklWD~R~~~-c~q---tF~ghesDINsv~ffP~--G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQ-CVQ---TFEGHESDINSVRFFPS--GDAFATGSDDATCRLYDLRAD-QELAVYSHDSIIC 274 (343)
T ss_pred EEecccccceeeeeccCcc-eeE---eecccccccceEEEccC--CCeeeecCCCceeEEEeecCC-cEEeeeccCcccC
Confidence 9999999999999999986 555 44577899999999999 999999999999999999987 566666532 35
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1279 ~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+|++++|+-.|++|.+|..|.++.+|| +.++.+..+.+ |+ +.|+|+..+|||..+++|+.|.+++||.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-He-------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HE-------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cC-------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 899999999999999999999999999 88999999988 76 8999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.40 Aligned_cols=270 Identities=20% Similarity=0.346 Sum_probs=247.6
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCceEEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPF--SPIVVAADENERIKIWNYEEDTLLNS 1078 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspd--g~~Latgs~Dg~I~IWd~~tg~~l~~ 1078 (1354)
.+..|.++.++..+++++-+|.+++|+.... ..|.++.|||. +..+|+|+.||+|++|++++...+..
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~ 256 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD 256 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh
Confidence 4677889999999999999999999999875 77999999997 55899999999999999999999999
Q ss_pred eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1079 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1079 ~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
+.+|. .+|..++| .|+|.+|+|++.|.+-|+||+.+ +...+. ..||...|.+ ++|+++|..+++
T Consensus 257 l~gH~---~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~t--k~ElL~-----QEGHs~~v~~----iaf~~DGSL~~t 320 (459)
T KOG0272|consen 257 LEGHL---ARVSRVAF--HPSGKFLGTASFDSTWRLWDLET--KSELLL-----QEGHSKGVFS----IAFQPDGSLAAT 320 (459)
T ss_pred hhcch---hhheeeee--cCCCceeeecccccchhhccccc--chhhHh-----hcccccccce----eEecCCCceeec
Confidence 99999 89999999 68999999999999999999977 333333 6899999998 999999999999
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000681 1159 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv 1238 (1354)
||.|..-+|||++++. ++..+.+|... |.+| .|+|+|..+++|+.|++++|||+|..+. .. ...+|..-|+.|
T Consensus 321 GGlD~~~RvWDlRtgr-~im~L~gH~k~-I~~V-~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly---~ipAH~nlVS~V 393 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGR-CIMFLAGHIKE-ILSV-AFSPNGYHLATGSSDNTCKVWDLRMRSE-LY---TIPAHSNLVSQV 393 (459)
T ss_pred cCccchhheeecccCc-EEEEecccccc-eeeE-eECCCceEEeecCCCCcEEEeeeccccc-ce---ecccccchhhhe
Confidence 9999999999999999 99999997776 9999 7899999999999999999999998874 33 344778999999
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.|+|. .|.+|+|++.|++++||..++. .+++++.+|.+.|.++++++++.+|+|++.|+++++|.
T Consensus 394 k~~p~-~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 394 KYSPQ-EGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred Eeccc-CCeEEEEcccCcceeeecCCCc-ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99995 6999999999999999999998 79999999999999999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=266.83 Aligned_cols=269 Identities=16% Similarity=0.285 Sum_probs=231.1
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc
Q 000681 1054 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1133 (1354)
Q Consensus 1054 ~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l 1133 (1354)
-+|++++.|.+||+|...+|.+..+++-.. +.|+.+.. .++++.|++++. ..||+||+.+.+.... .++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLei--Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv-----~t~ 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEI--TPDKKDLAAAGN-QHVRLYDLNSNNPNPV-----ATF 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEE--cCCcchhhhccC-CeeEEEEccCCCCCce-----eEE
Confidence 389999999999999999999999998777 89999999 689999998875 5899999988443333 458
Q ss_pred cCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEE
Q 000681 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1213 (1354)
Q Consensus 1134 ~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIw 1213 (1354)
.+|...|.. +.|+.++..+++||+||+++|||++... +.+.++.. ++|+++ ...|+...|++|..+|.|++|
T Consensus 80 e~h~kNVta----VgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~~~--spVn~v-vlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 80 EGHTKNVTA----VGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQHN--SPVNTV-VLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred eccCCceEE----EEEeecCeEEEecCCCceEEEEeccCcc-cchhccCC--CCcceE-EecCCcceEEeecCCCcEEEE
Confidence 899999988 8999999999999999999999999977 66666543 569999 788999999999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-----ccEEEEecCCCCeEEEEEcCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-----DAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-----~~v~~l~~h~~~VtsLafspd 1288 (1354)
|++........+ . +....|.++.+.|+ |.+++.+...|..++|++-+.. +++..++.|.+.+..+.+||+
T Consensus 152 Dl~~~~c~~~li-P--e~~~~i~sl~v~~d--gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 152 DLGENSCTHELI-P--EDDTSIQSLTVMPD--GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EccCCccccccC-C--CCCcceeeEEEcCC--CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 999876333333 2 22378999999999 9999999999999999986532 577889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCce--EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1289 APIIASGSAKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1289 g~~Lasgs~Dg~I~Iwd~~g~~--l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+++||++|.|.+++||+.++-. -..+++ |+ ..+++.+||.||.+|++|+.|+.+++|+
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~-------rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQ-------RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeec-CC-------ceEEeeeeccCccEEEecCCCCceeecc
Confidence 9999999999999999987752 233444 44 7899999999999999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=294.94 Aligned_cols=280 Identities=19% Similarity=0.349 Sum_probs=242.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|. ..|+++.| +.++.++++|+.+|.|++|+..-
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD---s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnm- 169 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD---SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNM- 169 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc---ccceeEEE--ccCCCEEEEcCCCceEEecccch-
Confidence 3689999999999999999999999999986555455567898 89999999 78999999999999999999754
Q ss_pred CCcceEEeeeecccC-CCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1121 KDKQKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~-h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
...+ .+.. |...|++ ++|+|.+..++++++||+|+|||....+ ....+.+|.- .|.++ .+.|...
T Consensus 170 -nnVk------~~~ahh~eaIRd----lafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksv-dWHP~kg 235 (464)
T KOG0284|consen 170 -NNVK------IIQAHHAEAIRD----LAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSV-DWHPTKG 235 (464)
T ss_pred -hhhH------HhhHhhhhhhhe----eccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-Cccee-ccCCccc
Confidence 2222 2344 4488998 9999999999999999999999999888 6777777654 49999 6677888
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1279 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~ 1279 (1354)
.+++|+.|..|++||.|++.++. ...+|+..|..+.|+++ +++|+++|.|..++++|+++. +.+.++++|+..
T Consensus 236 LiasgskDnlVKlWDprSg~cl~----tlh~HKntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkd 308 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLA----TLHGHKNTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKD 308 (464)
T ss_pred eeEEccCCceeEeecCCCcchhh----hhhhccceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHhhcchhh
Confidence 99999999999999999998443 33477899999999999 899999999999999999977 588899999999
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1280 LSALAVHRH-APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1280 VtsLafspd-g~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|++++|||- ..+|.+|+.||.|..|.+. .+++..+...|. +.|++++|||-|.+|++|+.|.++++|.
T Consensus 309 v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd-------~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 309 VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHD-------GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred heeeccccccccceeeccCCCceEEEeccccccccCCCcccc-------cceeeeeccccceeEeecCCCcceeeec
Confidence 999999995 4589999999999999976 556666655344 8999999999999999999999999994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=281.00 Aligned_cols=282 Identities=20% Similarity=0.307 Sum_probs=252.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
.+|+.+.|||+...++++++|++|++||..+|+.+..+++|. ..+.++.| +..|.+|++++.|-.+++||..+.
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~- 182 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT---DSVFDISF--DASGKYLATCSSDLSAKLWDFDTF- 182 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc---cceeEEEE--ecCccEEEecCCccchhheeHHHH-
Confidence 578899999999999999999999999999999999999999 88999999 578999999999999999998541
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
..+.+.+.+|...|.+ +.|-|.+.++++++.|.+|+.||+.++. ++.++++|.+. |..+ ....||.++
T Consensus 183 -----~~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ew-vr~v-~v~~DGti~ 250 (406)
T KOG0295|consen 183 -----FRCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEW-VRMV-RVNQDGTII 250 (406)
T ss_pred -----HHHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecccce-eEEeccCchHh-EEEE-EecCCeeEE
Confidence 2334667899999988 8888999999999999999999999999 99999999886 8888 667899999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------------CCCCEEEEEECCCcEEEEeCCCCCc
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------------LDPAKIVSASQAGDIQFLDIRNHKD 1268 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~-------------~~g~~Lasgs~DG~I~IWDl~~~~~ 1268 (1354)
++++.|.+|++|-..+++. .. .+++|...|-+++|.|. .++.++.+|+.|++|++||+.++ .
T Consensus 251 As~s~dqtl~vW~~~t~~~-k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~ 325 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQC-KA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-M 325 (406)
T ss_pred EecCCCceEEEEEeccchh-hh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-e
Confidence 9999999999999998852 22 44577799999999775 23469999999999999999999 7
Q ss_pred cEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1269 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1269 ~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
++.++.+|...|..++|||.|++|+++.+|+++++||+ +++++.++.. |+ ..|++++|+.+..++++|+.|
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~-------hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HE-------HFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-Cc-------ceeEEEecCCCCceEEecccc
Confidence 99999999999999999999999999999999999995 5677777776 77 569999999999999999999
Q ss_pred CeEEEcC
Q 000681 1348 ACVSIHS 1354 (1354)
Q Consensus 1348 g~V~IWd 1354 (1354)
..+++|.
T Consensus 398 qt~KvwE 404 (406)
T KOG0295|consen 398 QTVKVWE 404 (406)
T ss_pred ceeeeee
Confidence 9999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=259.49 Aligned_cols=273 Identities=15% Similarity=0.266 Sum_probs=235.5
Q ss_pred ceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eEEEeeCCCCCCCCe
Q 000681 1022 FDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGI 1089 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~--~l~~~~~h~~~~~~I 1089 (1354)
-.|++++-|.+|++|...+| .+|+.+.+.|+++.||+|+ ...||+||+.+++ .+.+|.+|. ..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~---kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHT---KNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccC---Cce
Confidence 35778888999999999987 7899999999999999998 7789999999774 688999998 899
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1090 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1090 tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
+++.| ..+|+.++|||+||++||||++.. .. +..-.|..+|++ +..+|+...|++|..+|.|+|||
T Consensus 87 taVgF--~~dgrWMyTgseDgt~kIWdlR~~----~~----qR~~~~~spVn~----vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 87 TAVGF--QCDGRWMYTGSEDGTVKIWDLRSL----SC----QRNYQHNSPVNT----VVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred EEEEE--eecCeEEEecCCCceEEEEeccCc----cc----chhccCCCCcce----EEecCCcceEEeecCCCcEEEEE
Confidence 99999 789999999999999999999661 11 223456788888 88899999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCC
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPA 1247 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~--~~~~~~~~~~h~~~I~sv~fsp~~~g~ 1247 (1354)
+.... +...+-...+..|.++ ...++|.+++++...|..++|++-+... .+.....+..|.+.+..+.++|+ ++
T Consensus 153 l~~~~-c~~~liPe~~~~i~sl-~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k 228 (311)
T KOG0315|consen 153 LGENS-CTHELIPEDDTSIQSL-TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VK 228 (311)
T ss_pred ccCCc-cccccCCCCCcceeeE-EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--Cc
Confidence 99987 7777665566679999 6778999999999999999999976542 22233345678899999999999 99
Q ss_pred EEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEec
Q 000681 1248 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1316 (1354)
Q Consensus 1248 ~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~ 1316 (1354)
+|+++|.|.+++||+..+.-..-..+.+|...++.++||.||.+|++|+.|+.+++|++ .++.+....+
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 99999999999999998763455678899999999999999999999999999999995 5777888777
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=279.71 Aligned_cols=278 Identities=18% Similarity=0.272 Sum_probs=241.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|++++|+.+|..||+|+.||.++||+.. |.++.++..|. ++|.+++| +..|.+|++++.||++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~-- 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHT-- 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC---CceEEEEE--cCCCCEEEeccCCccEEEEeccC--
Confidence 679999999999999999999999999976 88889999999 99999999 78999999999999999999976
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
+..... +.-|..+-.. +.|. +...+++++.||.|+|+-+.... ++.++.+|++. |.+| -+.+.|.+|
T Consensus 308 g~~~q~-----f~~~s~~~lD----VdW~-~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~-V~al-k~n~tg~LL 374 (524)
T KOG0273|consen 308 GTVKQQ-----FEFHSAPALD----VDWQ-SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE-VNAL-KWNPTGSLL 374 (524)
T ss_pred ceEEEe-----eeeccCCccc----eEEe-cCceEeecCCCceEEEEEecCCC-cceeeecccCc-eEEE-EECCCCceE
Confidence 333322 4445544333 8897 56788889999999999999888 99999998777 9999 778899999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------CCCCEEEEEECCCcEEEEeCCCCCccEEEEe
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------LDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~-------~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~ 1274 (1354)
++++.|++++||.+.... ... .+.+|...|..+.|+|. ..+..+++++.|++|++||+..+ .++.++.
T Consensus 375 aS~SdD~TlkiWs~~~~~-~~~---~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~ 449 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSN-SVH---DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLM 449 (524)
T ss_pred EEecCCCeeEeeecCCCc-chh---hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeec
Confidence 999999999999987665 222 44577899999999987 24568999999999999999998 7999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
.|..+|.+++|+|+|+++|+|+.||.|.||+. .++..+.... .+.|..++|+.+|..|..+..||.+.+-
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---------~~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---------TGGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---------CCeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 99999999999999999999999999999994 5777777665 3679999999999999999999998875
Q ss_pred C
Q 000681 1354 S 1354 (1354)
Q Consensus 1354 d 1354 (1354)
|
T Consensus 521 d 521 (524)
T KOG0273|consen 521 D 521 (524)
T ss_pred E
Confidence 3
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=264.05 Aligned_cols=269 Identities=17% Similarity=0.262 Sum_probs=238.0
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------ce
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEED------TL 1075 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg------~~ 1075 (1354)
|....+..+...++++..|+.+.+||.-+. ..|..++|+|.|+++|.|+-|+...||++.+. ..
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 445567788899999999999999998775 66889999999999999999999999999854 45
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec-CCC
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSG 1154 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-~~~ 1154 (1354)
.+.+.+|. +-+.+..|. +...|+|++.|.+..+||+++ ++.. +.+.+|...|.+ ++..| +++
T Consensus 138 ~r~l~gHt---gylScC~f~---dD~~ilT~SGD~TCalWDie~--g~~~-----~~f~GH~gDV~s----lsl~p~~~n 200 (343)
T KOG0286|consen 138 SRELAGHT---GYLSCCRFL---DDNHILTGSGDMTCALWDIET--GQQT-----QVFHGHTGDVMS----LSLSPSDGN 200 (343)
T ss_pred eeeecCcc---ceeEEEEEc---CCCceEecCCCceEEEEEccc--ceEE-----EEecCCcccEEE----EecCCCCCC
Confidence 56788999 899999994 688999999999999999977 4433 347899999988 88888 888
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
.+++|+.|+..++||++.+. +++++.+|... |+++ .+.|+|.-|++|+.|++.|+||+|..+. +..+ .+..-..+
T Consensus 201 tFvSg~cD~~aklWD~R~~~-c~qtF~ghesD-INsv-~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~y-s~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESD-INSV-RFFPSGDAFATGSDDATCRLYDLRADQE-LAVY-SHDSIICG 275 (343)
T ss_pred eEEecccccceeeeeccCcc-eeEeecccccc-cceE-EEccCCCeeeecCCCceeEEEeecCCcE-Eeee-ccCcccCC
Confidence 99999999999999999999 99999998776 9999 5568999999999999999999999873 4444 33445678
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
|++++|+.. |++|.+|..|.++.+||.-.+ +.+..+.+|.+.|+|+..+|||..+++||.|.+++||.
T Consensus 276 itSv~FS~S--GRlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKS--GRLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEccc--ccEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999998 999999999999999999887 78999999999999999999999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=283.84 Aligned_cols=310 Identities=15% Similarity=0.290 Sum_probs=269.2
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCC--------------------------------------------CCCeEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRF--------------------------------------------EKGTKT 1046 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~--------------------------------------------~~~I~s 1046 (1354)
.+..|.+..+..++.+-+.||.+.+|.... ...+++
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 477888888888999999999999998760 056899
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-CeEEEEEccCCCCcce
Q 000681 1047 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNIRIWKDYDQKDKQK 1125 (1354)
Q Consensus 1047 L~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D-G~IrIWdl~~~~~~~~ 1125 (1354)
.+||+.-..||+|-..|...+|.+.+-..++.+.... .+|..+.| +..|..|+.|+.. |.+-||+... +...
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~--N~tGDWiA~g~~klgQLlVweWqs--EsYV 343 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSF--NSTGDWIAFGCSKLGQLLVWEWQS--ESYV 343 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEe--cccCCEEEEcCCccceEEEEEeec--ccee
Confidence 9999999999999999999999999999999998877 78999999 6789999998765 8999999966 2222
Q ss_pred EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE
Q 000681 1126 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1205 (1354)
Q Consensus 1126 lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs 1205 (1354)
+ ..++|...+.+ ++++|+|..+++|++||.|+|||..++- |..++..|... |+.+ .+...|+.+++.+
T Consensus 344 l-----KQQgH~~~i~~----l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~-Vt~v-~f~~~g~~llssS 411 (893)
T KOG0291|consen 344 L-----KQQGHSDRITS----LAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSG-VTAV-QFTARGNVLLSSS 411 (893)
T ss_pred e-----eccccccceee----EEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCc-eEEE-EEEecCCEEEEee
Confidence 2 26789999998 9999999999999999999999999999 99999999887 9999 6778999999999
Q ss_pred CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC-cEEEEeCCCCCccEEEEecCCCCeEEEE
Q 000681 1206 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG-DIQFLDIRNHKDAYLTIDAHRGSLSALA 1284 (1354)
Q Consensus 1206 ~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG-~I~IWDl~~~~~~v~~l~~h~~~VtsLa 1284 (1354)
-||+||.||+.... ..+++.... .....+++..|. |..++.|+.|. .|.+|++.++ +.+..+.+|.++|.+++
T Consensus 412 LDGtVRAwDlkRYr-NfRTft~P~--p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYR-NFRTFTSPE--PIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLS 485 (893)
T ss_pred cCCeEEeeeecccc-eeeeecCCC--ceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeE
Confidence 99999999998776 444443321 256778889998 99999999886 4999999999 79999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC--ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1285 VHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1285 fspdg~~Lasgs~Dg~I~Iwd~~g--~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|+|++..||+||.|.+|++||+-+ ....++.. ...+..++|+|+|+.||+++.||.|.+||
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EccccCeEEeccccceEEEEEeeccCceeeeEee---------ccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 999999999999999999999432 35666654 25699999999999999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=282.87 Aligned_cols=316 Identities=17% Similarity=0.272 Sum_probs=266.4
Q ss_pred eeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCceEEEeeCC
Q 000681 1014 KCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNH 1082 (1354)
Q Consensus 1014 ~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~D-g~I~IWd~~tg~~l~~~~~h 1082 (1354)
...+.+....++++-..+...++....- ..|..+.|+..|+.||.|+.. |.+-||+|.+...+-..++|
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 3455555566888888888878877643 678999999999999998855 89999999999999999999
Q ss_pred CCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC
Q 000681 1083 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1162 (1354)
Q Consensus 1083 ~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D 1162 (1354)
. ..++++++ ++||.+++||++||.|+|||... + .|+.++..|+..|+. +.|+..+..+++++-|
T Consensus 350 ~---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~S--g-----fC~vTFteHts~Vt~----v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 350 S---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQS--G-----FCFVTFTEHTSGVTA----VQFTARGNVLLSSSLD 413 (893)
T ss_pred c---cceeeEEE--CCCCcEEEeccCCCcEEEEeccC--c-----eEEEEeccCCCceEE----EEEEecCCEEEEeecC
Confidence 9 89999999 89999999999999999999855 2 234668999999998 9999999999999999
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1163 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1163 g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG-sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
|+|+.||+.+.. ..+++.........|+ +..+.|..+++|+.|. .|.+|++.+++ +.. .+.||.++|.+++|+
T Consensus 414 GtVRAwDlkRYr-NfRTft~P~p~Qfscv-avD~sGelV~AG~~d~F~IfvWS~qTGq-llD---iLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 414 GTVRAWDLKRYR-NFRTFTSPEPIQFSCV-AVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLD---ILSGHEGPVSGLSFS 487 (893)
T ss_pred CeEEeeeecccc-eeeeecCCCceeeeEE-EEcCCCCEEEeeccceEEEEEEEeecCe-eee---hhcCCCCcceeeEEc
Confidence 999999999999 9999988777667888 6778899999999887 59999999998 444 556889999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCc
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPS 1320 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~ 1320 (1354)
|. +..|++||.|.+||+||+-.....+.++. +...+..++|+|+|+-||+++.||.|.+||. ++.++..+.+.+.-
T Consensus 488 ~~--~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 488 PD--GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL 564 (893)
T ss_pred cc--cCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence 99 99999999999999999976544666665 5667999999999999999999999999994 45555555442111
Q ss_pred ---------c---ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1321 ---------F---MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1321 ---------f---l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+ .......++.+++++||..+++||..+.|.||+
T Consensus 565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 0 012346789999999999999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=264.07 Aligned_cols=280 Identities=25% Similarity=0.447 Sum_probs=238.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
...|++++|+|++++|++++.+|.|++|+..+++....+..|. ..+..+.| .++++++++++.||.|++|++...
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA--SADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcc
Confidence 3689999999999999999999999999999988888888888 78889999 578889999999999999999652
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
+. . ..+..|...+.+ +.|++++..+++++.+|.|++||+++.+ ....+..+... |+++ .+.+++.+
T Consensus 84 --~~--~---~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~~ 149 (289)
T cd00200 84 --EC--V---RTLTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDW-VNSV-AFSPDGTF 149 (289)
T ss_pred --cc--e---EEEeccCCcEEE----EEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCc-EEEE-EEcCcCCE
Confidence 11 1 234567777777 8899887777777779999999999887 78888766554 9999 66777888
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+++++.||.|++||+++++ ....+. .|...|.++.|+|+ +..+++++.||.|++||++.+ ..+..+..|...+
T Consensus 150 l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i 222 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGK-CVATLT---GHTGEVNSVAFSPD--GEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGV 222 (289)
T ss_pred EEEEcCCCcEEEEEccccc-cceeEe---cCccccceEEECCC--cCEEEEecCCCcEEEEECCCC-ceecchhhcCCce
Confidence 8888889999999999776 333332 45679999999999 889999999999999999987 6788887899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.++.|++++.++++++.||.|++|+.. ++.+..+.. |. ..|.+++|++++.+|++++.||.|++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HT-------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cC-------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999899999889999999965 667777766 54 6899999999999999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=255.96 Aligned_cols=285 Identities=16% Similarity=0.236 Sum_probs=232.3
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCcEEEEECC-----CCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1042 KGTKTALLQPFS-PIVVAADENERIKIWNYE-----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg-~~Latgs~Dg~I~IWd~~-----tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
..|+.++..+.+ +.+++++.|.++.+|++. .|..++.+++|. ..|+.+.. ++||++.++++.||++|+|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~--s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVL--SSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc---eEecceEE--ccCCceEEeccccceEEEE
Confidence 678999988864 588999999999999764 467899999999 88999998 7899999999999999999
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEEEEEE
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTAS 1194 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~-~~~Vtsl~~~ 1194 (1354)
|+.+ ++.. +.+.+|...|.+ +++++++..+++|+.|++|++||+..+. ..++..+. ...|+|+ .|
T Consensus 91 Dl~~--g~~t-----~~f~GH~~dVls----va~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscv-rf 156 (315)
T KOG0279|consen 91 DLAT--GEST-----RRFVGHTKDVLS----VAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCV-RF 156 (315)
T ss_pred EecC--CcEE-----EEEEecCCceEE----EEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEE-EE
Confidence 9977 3222 347899999988 9999999999999999999999998764 55665543 4559999 55
Q ss_pred cCC--CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEE
Q 000681 1195 QVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1272 (1354)
Q Consensus 1195 s~~--g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~ 1272 (1354)
+|+ .-+|++++.|++|++||+++-+ ... .+.||.+.++.+.++|+ |..+++|+.||.+.+||++.+ +.+.+
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~---~~~gh~~~v~t~~vSpD--GslcasGgkdg~~~LwdL~~~-k~lys 229 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQ-LRT---TFIGHSGYVNTVTVSPD--GSLCASGGKDGEAMLWDLNEG-KNLYS 229 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcc-hhh---ccccccccEEEEEECCC--CCEEecCCCCceEEEEEccCC-ceeEe
Confidence 665 6799999999999999999876 333 55688899999999999 999999999999999999998 46666
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCcc-ccccCCCeEEEEEecCCCEEEEEECCCeE
Q 000681 1273 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-MAQKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1273 l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~f-l~~~~~~V~sLafspdg~~Lasgs~Dg~V 1350 (1354)
+. |...|.+++|+|+...|+.+... .|+|||++ +..+..++..-.+. .........+++|+++|..|.+|..|+.|
T Consensus 230 l~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 65 77899999999998888777654 59999965 45555554311111 00112235678999999999999999999
Q ss_pred EEcC
Q 000681 1351 SIHS 1354 (1354)
Q Consensus 1351 ~IWd 1354 (1354)
++|.
T Consensus 308 rv~q 311 (315)
T KOG0279|consen 308 RVWQ 311 (315)
T ss_pred EEEE
Confidence 9993
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=265.58 Aligned_cols=284 Identities=19% Similarity=0.342 Sum_probs=245.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
+.|.|+++.|.+..+++|+.|++|+|||+.+|++..++.+|. ..|..+++ ++-..||++++.|+.|+.||+..
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi---~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~-- 224 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI---ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEY-- 224 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh---heeeeeee--cccCceEEEecCCCeeEEEechh--
Confidence 789999999999999999999999999999999999999999 89999999 67889999999999999999955
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
.+.+ +.+.||...|.+ ++.+|.-..|++||.|.++||||+++.. .+..+.+|... |.++ .+++....+
T Consensus 225 --nkvI---R~YhGHlS~V~~----L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~-V~~V-~~~~~dpqv 292 (460)
T KOG0285|consen 225 --NKVI---RHYHGHLSGVYC----LDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP-VASV-MCQPTDPQV 292 (460)
T ss_pred --hhhH---HHhccccceeEE----EeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCc-ceeE-EeecCCCce
Confidence 2333 678999999998 8889999999999999999999999999 99999998876 9999 666677789
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
++|+.|++|++||++.++... ....|+..+.+++.+|. ...|++++.| .|+-|++..+ ..+..+.+|+.-|+
T Consensus 293 it~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~--e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPK--ENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAIIN 364 (460)
T ss_pred EEecCCceEEEeeeccCceeE----eeecccceeeEEecCCc--hhhhhccCCc-cceeccCCcc-chhhccccccceee
Confidence 999999999999999998544 33467799999999999 8889999887 6899999988 67888999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEecc-CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH-HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~-h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+++...|+ ++++|+.+|.+.+|| .+|...+..... ..+-+ .....|.+.+|...|..|++|..|.+|++|.
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl-~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL-ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCcc-ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 99999876 788999999999999 455444433210 11111 2346799999999999999999999999993
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=294.02 Aligned_cols=278 Identities=19% Similarity=0.315 Sum_probs=232.6
Q ss_pred cEEEEeCCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000681 1032 PIACWDTRF-EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110 (1354)
Q Consensus 1032 ~I~iWd~~~-~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG 1110 (1354)
.+..+.+.+ ...++|..|++|+.+||.|-.|..|++|.+... .++.++... + ...+=+.+.|-
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~----------~-----l~~~d~~sad~ 431 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS----------D-----LSNIDTESADV 431 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh----------h-----hccccccccch
Confidence 456666554 478999999999999999999999999998854 333343322 1 11122234444
Q ss_pred eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000681 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vts 1190 (1354)
.+.+-|... .... +.+.+|.++|.+ +.|+|+.++|++++.|++||+|.+.+.. ++..+++|.. +|..
T Consensus 432 ~~~~~D~~~---~~~~----~~L~GH~GPVyg----~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwd 498 (707)
T KOG0263|consen 432 DVDMLDDDS---SGTS----RTLYGHSGPVYG----CSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWD 498 (707)
T ss_pred hhhhccccC---Ccee----EEeecCCCceee----eeecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceee
Confidence 455555433 1111 347899999999 9999999999999999999999999999 9999997755 5999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccE
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v 1270 (1354)
+ .+.|.|.+|++++.|++-++|.....+ ..+ .+.+|.+.|.|+.|||+ ..++++||.|.+|++||+.++ ..+
T Consensus 499 V-~F~P~GyYFatas~D~tArLWs~d~~~-PlR---ifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~V 570 (707)
T KOG0263|consen 499 V-QFAPRGYYFATASHDQTARLWSTDHNK-PLR---IFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSV 570 (707)
T ss_pred E-EecCCceEEEecCCCceeeeeecccCC-chh---hhcccccccceEEECCc--ccccccCCCCceEEEEEcCCC-cEE
Confidence 9 577999999999999999999998766 444 44578899999999999 999999999999999999999 799
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1271 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1271 ~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
+.|.+|.++|++++|+|+|++||+|+.||.|+|||+ .|..+..+++ |. +.|.++.|+.+|..||+|+.|++
T Consensus 571 RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht-------~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 571 RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HT-------GTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-cc-------CceeEEEEecCCCEEEecCCCCe
Confidence 999999999999999999999999999999999995 4688888888 65 89999999999999999999999
Q ss_pred EEEcC
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 V~IWd 1354 (1354)
|++||
T Consensus 643 V~lWD 647 (707)
T KOG0263|consen 643 VRLWD 647 (707)
T ss_pred EEEEE
Confidence 99997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=278.57 Aligned_cols=281 Identities=20% Similarity=0.346 Sum_probs=247.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|.++.|||.++.++++-.+|.|.|||+++...++.|.... .+|.+..|+ ...+.+++|++|..||||+..+
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt-- 86 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT-- 86 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheee--eccceEEEecCCceEEEEeccc--
Confidence 679999999999999999999999999999999999999888 789999996 5788999999999999999966
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
.+.+ +.+..|..-|++ ++.+|...+++++++|-.|++||.+.+-.|.+++.+|..- |.++++.+.|.+.|
T Consensus 87 --~ekV---~~FeAH~DyIR~----iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-VMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 87 --GEKV---KTFEAHSDYIRS----IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-VMQVAFNPKDPNTF 156 (794)
T ss_pred --ceee---EEeeccccceee----eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE-EEEEEecCCCccce
Confidence 2223 457899999999 8999999999999999999999999876588999998776 99998888899999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
++++-|++|++|.+.+..+ .. ++.+|...|+++.+-+.++..+|++|+.|.+|+|||..+. .+++++.+|...|+
T Consensus 157 aS~sLDrTVKVWslgs~~~-nf---Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs 231 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHP-NF---TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVS 231 (794)
T ss_pred eeeeccccEEEEEcCCCCC-ce---eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccce
Confidence 9999999999999988773 33 4458889999999988755679999999999999999997 79999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
.+.|||.-++|++||.||+|+||+.. -+...++.+ ..+.|+|++-++.+..++.|.+.|.|.|
T Consensus 232 ~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999943 333344433 2378999999999999999998887754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=275.33 Aligned_cols=269 Identities=20% Similarity=0.345 Sum_probs=235.7
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
+...++.++|..|+++...|.+.+|+...- ..|+++.|+++|.++++|+.+|.|++|+..- ..++.++.
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a 177 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA 177 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhH
Confidence 667788999999999999999999997542 7899999999999999999999999998763 33444554
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~ 1161 (1354)
|. ...|++++| +++...++++++||+|+|||... .+.+.+ +.+|.-.|++ ++|+|..+.++++|.
T Consensus 178 hh--~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~--~kee~v-----L~GHgwdVks----vdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 178 HH--AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRM--PKEERV-----LRGHGWDVKS----VDWHPTKGLIASGSK 242 (464)
T ss_pred hh--hhhhheecc--CCCCceeEEecCCCeEEEEeccC--Cchhhe-----eccCCCCcce----eccCCccceeEEccC
Confidence 43 168999999 78999999999999999999876 344433 7899999998 999999999999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
|..|++||.+++. |+.++..|... |..+ .+++++++|++++.|..+++||+|+.+.+ . ..++|...++++.|+
T Consensus 243 DnlVKlWDprSg~-cl~tlh~HKnt-Vl~~-~f~~n~N~Llt~skD~~~kv~DiR~mkEl-~---~~r~Hkkdv~~~~Wh 315 (464)
T KOG0284|consen 243 DNLVKLWDPRSGS-CLATLHGHKNT-VLAV-KFNPNGNWLLTGSKDQSCKVFDIRTMKEL-F---TYRGHKKDVTSLTWH 315 (464)
T ss_pred CceeEeecCCCcc-hhhhhhhccce-EEEE-EEcCCCCeeEEccCCceEEEEehhHhHHH-H---Hhhcchhhheeeccc
Confidence 9999999999999 99999998887 9999 78889999999999999999999965532 2 456788999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l-~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
|- ...+|.+|+.||.|..|.+... +++..+ .+|.+.|++++|||-|.+||+|+.|.++++|.
T Consensus 316 P~-~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 316 PL-NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cc-cccceeeccCCCceEEEecccc-ccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 98 7889999999999999999855 455444 47999999999999999999999999999998
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=255.19 Aligned_cols=277 Identities=19% Similarity=0.316 Sum_probs=232.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYE-EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~-tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
..|..+.|+|+|.+||+|+.|..|.+|++. .-+....+++|. +.|..+.| ..|++.|++++.|.+|+.||+++
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~t- 121 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---GAVMELHG--MRDGSHILSCGTDKTVRGWDAET- 121 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc---ceeEeeee--ccCCCEEEEecCCceEEEEeccc-
Confidence 679999999999999999999999999954 446667788999 99999999 68999999999999999999977
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
|+.. +..++|...|.. +.-...+..++.+ ++||++++||+++.. +++++... ..++++ .+...+.
T Consensus 122 -G~~~-----rk~k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~k--yqltAv-~f~d~s~ 187 (338)
T KOG0265|consen 122 -GKRI-----RKHKGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENK--YQLTAV-GFKDTSD 187 (338)
T ss_pred -ceee-----ehhccccceeee----cCccccCCeEEEecCCCceEEEEeecccc-hhhccccc--eeEEEE-Eeccccc
Confidence 3332 447888888877 4433345555554 689999999999988 88888653 348999 6677889
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC---ccEEEEecC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAH 1276 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~---~~v~~l~~h 1276 (1354)
.+.+|+-|+.|++||+|.++ ... ...||...|+.+..+++ |.++.+-+.|.++++||++... .++..+.+|
T Consensus 188 qv~sggIdn~ikvWd~r~~d-~~~---~lsGh~DtIt~lsls~~--gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKND-GLY---TLSGHADTITGLSLSRY--GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ceeeccccCceeeeccccCc-ceE---EeecccCceeeEEeccC--CCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 99999999999999999888 333 34578899999999999 9999999999999999998532 457778776
Q ss_pred CC----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000681 1277 RG----SLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1351 (1354)
Q Consensus 1277 ~~----~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~ 1351 (1354)
.. ....++|+|++..+.+|+.|..+++||..+ ..+..+.+ |. +.|++++|||...+|.+++.|.+|.
T Consensus 262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~-------gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HY-------GSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cc-------eeEEEeeecCCCcEEEEeccCceeE
Confidence 43 456789999999999999999999999665 56666666 55 8999999999999999999999987
Q ss_pred E
Q 000681 1352 I 1352 (1354)
Q Consensus 1352 I 1352 (1354)
+
T Consensus 334 l 334 (338)
T KOG0265|consen 334 L 334 (338)
T ss_pred e
Confidence 5
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=262.50 Aligned_cols=287 Identities=19% Similarity=0.302 Sum_probs=230.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee---CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~---~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
.-|+|+.|+|||.++++++.||+|.+||-.+|+.+..+. +|. +.|.++.| +||+..++|++.|.+++|||+.
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk---GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK---GSIFALSW--SPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc---ccEEEEEE--CCCCceEEEecCCceEEEEEee
Confidence 558999999999999999999999999999999999998 676 99999999 7999999999999999999997
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
+. ++++.|..-. .+...-+.+-|. +..|++.+-+|+|..++..... ....+.+|... |+++ ..++++
T Consensus 266 ~~----slv~t~~~~~----~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~-ITaL-tv~~d~ 332 (603)
T KOG0318|consen 266 TN----SLVSTWPMGS----TVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKS-ITAL-TVSPDG 332 (603)
T ss_pred cc----ceEEEeecCC----chhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccc-eeEE-EEcCCC
Confidence 62 3443322111 132322336676 7889999999999999999999 89999999887 9999 778899
Q ss_pred CEEEEEECCCeEEEEECCCCCee----------eEeecC------------------------CCCC-------------
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDML----------VCSTRP------------------------HTQQ------------- 1231 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~----------~~~~~~------------------------~~~h------------- 1231 (1354)
.+|++|+.||.|.-||..++... +..+.. ...+
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999998754311 000000 0000
Q ss_pred ------------------------------CCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEecCCCCe
Q 000681 1232 ------------------------------VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSL 1280 (1354)
Q Consensus 1232 ------------------------------~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h~~~V 1280 (1354)
.-...+++++|+ +..++.|+.||.|+||.+.... ........|.++|
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~--~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i 490 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD--GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI 490 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC--CCEEEEecccceEEEEEecCCcccceeeeecccCCc
Confidence 012346788888 9999999999999999998753 2333566799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
++++++||+.+||+|...+.|.+||........-. ..-|.+.|.|++|+|+..++|+|+-|..|.||+
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEEcccCceecce------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 99999999999999999999999997655543211 122458999999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=287.62 Aligned_cols=284 Identities=24% Similarity=0.393 Sum_probs=245.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~--~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
..|+++.|+++|.++++++.++.+++|+..+++ .+..+.+|. ..|.+++| ++++.++++|+.|++|+|||+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc---cceeeeEE--CCCCcEEEEecCCceEEEeeccC
Confidence 679999999999999999999999999998777 777778888 89999999 78999999999999999999933
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
.+. .. +.+.+|...|++ ++|+++++.+++|+.|++|+|||+++++ ++..+.+|.+. |+++ .++++++
T Consensus 235 -~~~--~~---~~l~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-is~~-~f~~d~~ 301 (456)
T KOG0266|consen 235 -DGR--NL---KTLKGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-ISGL-AFSPDGN 301 (456)
T ss_pred -CCe--EE---EEecCCCCceEE----EEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc-eEEE-EECCCCC
Confidence 122 22 558899999988 9999999999999999999999999999 99999999886 9999 8899999
Q ss_pred EEEEEECCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~-~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
.+++++.||.|++||+.++... ...+....... .++++.|+|+ +.++++++.|+.+++||++.+ ..+..+.+|..
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~--~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~ 377 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPN--GKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSN 377 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCC--CcEEEEecCCCeEEEEEccCC-cceeeecccCC
Confidence 9999999999999999998842 23333333223 6999999999 999999999999999999988 68889998877
Q ss_pred C---eEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE--CCCeEEE
Q 000681 1279 S---LSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS--ADACVSI 1352 (1354)
Q Consensus 1279 ~---VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs--~Dg~V~I 1352 (1354)
. +.+...++.+.++++|+.|+.|++|+.. +..+..+.+ |. ...+..++++|...++++++ .|+.|++
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-h~------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-HS------KAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-CC------CCceeccccCCCcCeeeecCcCCCceEEE
Confidence 4 3444557889999999999999999965 677777777 62 37899999999999999998 6999999
Q ss_pred cC
Q 000681 1353 HS 1354 (1354)
Q Consensus 1353 Wd 1354 (1354)
|.
T Consensus 451 w~ 452 (456)
T KOG0266|consen 451 WK 452 (456)
T ss_pred ec
Confidence 94
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=299.43 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=230.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeE
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEED----T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1112 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg----~----~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~I 1112 (1354)
...|.+++|+|+|++||+|+.|+.|+||+..+. . .+..+.. . ..|.+++|. ..++.+|++++.||+|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~~v~~l~~~-~~~~~~las~~~Dg~v 557 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R---SKLSGICWN-SYIKSQVASSNFEGVV 557 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c---CceeeEEec-cCCCCEEEEEeCCCeE
Confidence 467999999999999999999999999997532 1 1222332 2 478999994 3467899999999999
Q ss_pred EEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEE
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1191 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl 1191 (1354)
++||+.+ +. .+ ..+.+|...|++ ++|++ ++..|++|+.||.|++||++++. ++..+..+ ..|.++
T Consensus 558 ~lWd~~~--~~--~~---~~~~~H~~~V~~----l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~--~~v~~v 623 (793)
T PLN00181 558 QVWDVAR--SQ--LV---TEMKEHEKRVWS----IDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK--ANICCV 623 (793)
T ss_pred EEEECCC--Ce--EE---EEecCCCCCEEE----EEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC--CCeEEE
Confidence 9999965 22 22 346789999988 99996 56788999999999999999988 88887754 348888
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC-----
Q 000681 1192 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH----- 1266 (1354)
Q Consensus 1192 ~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~----- 1266 (1354)
.+.+++|.++++|+.||.|++||+++.+..... ..+|...|.++.|. + +.+|++++.|++|++||++..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~--~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-D--SSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-C--CCEEEEEECCCEEEEEeCCCCccccC
Confidence 666778999999999999999999976533332 34677999999997 4 689999999999999999743
Q ss_pred CccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCcc-----ccccCCCeEEEEEecCCCE
Q 000681 1267 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-----MAQKIGSVNCLTFHPYQVL 1340 (1354)
Q Consensus 1267 ~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~f-----l~~~~~~V~sLafspdg~~ 1340 (1354)
..++.++.+|...+.+++|++++.+||+|+.|+.|++|+.. +..+..+...+... ...+...|.+++|+|++.+
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 14778899999999999999999999999999999999954 33333322101100 1123467999999999999
Q ss_pred EEEEECCCeEEEcC
Q 000681 1341 LAAGSADACVSIHS 1354 (1354)
Q Consensus 1341 Lasgs~Dg~V~IWd 1354 (1354)
|++|+.||.|+||+
T Consensus 778 lva~~~dG~I~i~~ 791 (793)
T PLN00181 778 LVAANSTGNIKILE 791 (793)
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=275.47 Aligned_cols=317 Identities=23% Similarity=0.351 Sum_probs=243.1
Q ss_pred heeecCCCCceEEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1013 AKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1013 ~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
....-.++...|++..-...+++|++.++ .+|..++|+|.+.+|++|+.||.|+|||+..+.....|++
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG 145 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG 145 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence 33444555667777777778999999887 7899999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~ 1161 (1354)
|. +.|.++.|.+.....+|++|+.|++|++||+.+. .. +...+..|.+.|++ +.+.+++..++++|.
T Consensus 146 ~g---GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~--~t----cl~~~~~H~S~vts----L~~~~d~~~~ls~~R 212 (775)
T KOG0319|consen 146 HG---GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK--RT----CLHTMILHKSAVTS----LAFSEDSLELLSVGR 212 (775)
T ss_pred CC---ceEEEEEeCCccchhheeecCCCceEEEEEcccC--ch----HHHHHHhhhhheee----eeeccCCceEEEecc
Confidence 99 9999999976556678999999999999999751 11 22445667666666 444455544454455
Q ss_pred CCeEEEEEC----------------------------------------------CCCceee------------------
Q 000681 1162 VSSIMLWDL----------------------------------------------EKEQQMV------------------ 1177 (1354)
Q Consensus 1162 Dg~I~VWDl----------------------------------------------~t~~~~v------------------ 1177 (1354)
|+.+.|||+ ++++ ++
T Consensus 213 Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~-~~~~~~~~~~~e~~~~~~~~ 291 (775)
T KOG0319|consen 213 DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK-CVYKQRQSDSEEIDHLLAIE 291 (775)
T ss_pred CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch-hhhhhccCCchhhhcceecc
Confidence 555555444 3322 00
Q ss_pred -------------------------------------------------------------------eeecCCCCCCeEE
Q 000681 1178 -------------------------------------------------------------------NPIPSSSDCSISA 1190 (1354)
Q Consensus 1178 -------------------------------------------------------------------~~i~~~~~~~Vts 1190 (1354)
..+.+|.+. |.+
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~-vlS 370 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA-VLS 370 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh-eee
Confidence 001222222 555
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC--c
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--D 1268 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~--~ 1268 (1354)
+..+ ..|.+|++|+.|.++++|.+.++...........+|.+.|.+++++.. +..+|+++|.|++|++|++...+ .
T Consensus 371 L~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 371 LDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred eeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEecCCceEEEecCCCccccc
Confidence 5322 346799999999999999985554333334456689999999999877 67899999999999999998621 1
Q ss_pred --cEE----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEE
Q 000681 1269 --AYL----TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1341 (1354)
Q Consensus 1269 --~v~----~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~L 1341 (1354)
.+. +...|...|++++++|+..+|||||.|++.+||+++ +..+.++.+ |. ..|+|+.|+|..+.|
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~-------RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HT-------RGVWCVSFSKNDQLL 520 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-Cc-------cceEEEEecccccee
Confidence 111 345799999999999999999999999999999965 566677777 65 789999999999999
Q ss_pred EEEECCCeEEEcC
Q 000681 1342 AAGSADACVSIHS 1354 (1354)
Q Consensus 1342 asgs~Dg~V~IWd 1354 (1354)
||++.|++|+||+
T Consensus 521 aT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 521 ATCSGDKTVKIWS 533 (775)
T ss_pred EeccCCceEEEEE
Confidence 9999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=263.18 Aligned_cols=282 Identities=21% Similarity=0.364 Sum_probs=236.2
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--ceEE--Ee------eCCC-CCCCCeEEEEEEeeCCCCEEEEEe
Q 000681 1040 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED--TLLN--SF------DNHD-FPDKGISKLCLVNELDVSLLLVAS 1107 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg--~~l~--~~------~~h~-~~~~~ItsL~f~~s~d~~~L~tgs 1107 (1354)
....|.+.+|+|-.. .+++|+.|-+.++|++... .... .+ .++. +....|++++| +.+|.+|++|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEee
Confidence 447899999999776 9999999999999998741 1100 01 1111 12357999999 78999999999
Q ss_pred CCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000681 1108 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1108 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~ 1187 (1354)
.||.+|||+... .. + .++..|..+|.+ +.|+..|.+|++++-||++.+||..++. ..+.+..|...
T Consensus 255 ~~G~~riw~~~G---~l--~---~tl~~HkgPI~s----lKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~- 320 (524)
T KOG0273|consen 255 EDGEARIWNKDG---NL--I---STLGQHKGPIFS----LKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAP- 320 (524)
T ss_pred cCcEEEEEecCc---hh--h---hhhhccCCceEE----EEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCC-
Confidence 999999999743 22 2 457889999988 9999999999999999999999999998 77777766543
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~ 1267 (1354)
-..|.|. +...|++.+.||.|+|+-+.... ++.. +.||.+.|.++.|.|. |.+|+++|.|++++||.....
T Consensus 321 ~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t---~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 321 ALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKT---FIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred ccceEEe--cCceEeecCCCceEEEEEecCCC-ccee---eecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-
Confidence 3556454 46789999999999999998766 4443 3468899999999999 999999999999999998876
Q ss_pred ccEEEEecCCCCeEEEEEcCCCC---------EEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1268 DAYLTIDAHRGSLSALAVHRHAP---------IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1268 ~~v~~l~~h~~~VtsLafspdg~---------~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
.....+.+|...|..+.|+|.|+ .+++++.|++|++|| ..|.++.++.. |. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~-------~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQ-------EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CC-------CceEEEEecCC
Confidence 68899999999999999999653 789999999999999 67999999877 65 89999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000681 1338 QVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1338 g~~Lasgs~Dg~V~IWd 1354 (1354)
|+++|+|+.||.|.||+
T Consensus 464 g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWS 480 (524)
T ss_pred CcEEEecCCCCeeEecc
Confidence 99999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=244.43 Aligned_cols=254 Identities=21% Similarity=0.304 Sum_probs=216.1
Q ss_pred ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC
Q 000681 1074 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1153 (1354)
Q Consensus 1074 ~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~ 1153 (1354)
....++++|+ +.|+.++... .+.+.+++++.|.++.+|++... ..+.-...+.+.||...|.. +..++++
T Consensus 6 ~l~~tl~gh~---d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~d----v~~s~dg 75 (315)
T KOG0279|consen 6 VLRGTLEGHT---DWVTALAIKI-KNSDILVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSD----VVLSSDG 75 (315)
T ss_pred eeeeeecCCC---ceEEEEEeec-CCCceEEEcccceEEEEEEeccC--ccccCceeeeeeccceEecc----eEEccCC
Confidence 3456788999 9999999853 46789999999999999999763 22332334778999999998 7888999
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000681 1154 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1233 (1354)
Q Consensus 1154 ~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~ 1233 (1354)
++.++++.|+++++||+.+++ ..+.+.+|... |.++ .++++.+.+++|+.|.+|++||+.... ..... . .+|..
T Consensus 76 ~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~d-Vlsv-a~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~-~-~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGE-STRRFVGHTKD-VLSV-AFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIH-E-DSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCc-EEEEEEecCCc-eEEE-EecCCCceeecCCCcceeeeeeecccE-EEEEe-c-CCCcC
Confidence 999999999999999999998 89999998877 9999 788999999999999999999998665 22222 2 23379
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEE
Q 000681 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLG 1312 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~ 1312 (1354)
+|.++.|+|+....+|++++.|++|++||+++. +....+.+|.+.++.++++|||.++++|+.||.+.+||+ +++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 999999999855789999999999999999998 688899999999999999999999999999999999995 567766
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1313 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1313 ~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+.. ...|.+++|+|+.-.|+.+. +..|+|||
T Consensus 229 sl~a---------~~~v~sl~fspnrywL~~at-~~sIkIwd 260 (315)
T KOG0279|consen 229 SLEA---------FDIVNSLCFSPNRYWLCAAT-ATSIKIWD 260 (315)
T ss_pred eccC---------CCeEeeEEecCCceeEeecc-CCceEEEe
Confidence 6643 37899999999987777765 55699996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-27 Score=278.06 Aligned_cols=305 Identities=20% Similarity=0.263 Sum_probs=245.1
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC--CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCe
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE--KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGI 1089 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~--~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~I 1089 (1354)
+..+.++.+...++.+-.+..|++|..... ..+....+ ...+=+++.|-.+.+-|-.++....++.+|. ++|
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~---l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~---GPV 454 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASD---LSNIDTESADVDVDMLDDDSSGTSRTLYGHS---GPV 454 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhh---hccccccccchhhhhccccCCceeEEeecCC---Cce
Confidence 445566666676777777779999998853 23332222 2233345556667888888888888899999 999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1090 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1090 tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
....| +|+.++|++++.|++||+|.+.+ .... -.+.||..+|+. +.|+|.|-++++++.|++-++|.
T Consensus 455 yg~sF--sPd~rfLlScSED~svRLWsl~t--~s~~-----V~y~GH~~PVwd----V~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 455 YGCSF--SPDRRFLLSCSEDSSVRLWSLDT--WSCL-----VIYKGHLAPVWD----VQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred eeeee--cccccceeeccCCcceeeeeccc--ceeE-----EEecCCCcceee----EEecCCceEEEecCCCceeeeee
Confidence 99999 78999999999999999999966 2222 347899999999 89999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
..... +.+.+.+|-.. |.|+ .+.|+.+++++|+.|.+||+||+.++. .++.+ .||.++|++++|+|+ |.+|
T Consensus 522 ~d~~~-PlRifaghlsD-V~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF---~GH~~~V~al~~Sp~--Gr~L 592 (707)
T KOG0263|consen 522 TDHNK-PLRIFAGHLSD-VDCV-SFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIF---TGHKGPVTALAFSPC--GRYL 592 (707)
T ss_pred cccCC-chhhhcccccc-cceE-EECCcccccccCCCCceEEEEEcCCCc-EEEEe---cCCCCceEEEEEcCC--CceE
Confidence 99988 89999988776 9999 788999999999999999999999998 56655 578899999999999 9999
Q ss_pred EEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEE----EEec---cC----
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG----TIRY---HH---- 1318 (1354)
Q Consensus 1250 asgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~----~i~~---~h---- 1318 (1354)
++|+.||.|++||+.++ ..+..+.+|.+.|.++.|+.+|.+||+|+.|++|++||+...... .+.. ++
T Consensus 593 aSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 671 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQEN 671 (707)
T ss_pred eecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccC
Confidence 99999999999999998 699999999999999999999999999999999999995311100 0000 00
Q ss_pred --Ccc----ccccCCCeEEEEEecCCCEEEEEE
Q 000681 1319 --PSF----MAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1319 --~~f----l~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
+++ ......+|.++.|....-.|++|.
T Consensus 672 ~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 672 NASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 000 112456899999988776666553
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=237.75 Aligned_cols=284 Identities=18% Similarity=0.347 Sum_probs=229.0
Q ss_pred CCeEEEEEcCC-CCEEEEEECCCcEEEEECCCC---ceEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 000681 1042 KGTKTALLQPF-SPIVVAADENERIKIWNYEED---TLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1116 (1354)
Q Consensus 1042 ~~I~sL~fspd-g~~Latgs~Dg~I~IWd~~tg---~~l~~~-~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWd 1116 (1354)
..+..++|||- |..||+++.|..|+||+...+ .+...+ .+|+ ..|.+++| +|.|++|++|+.|.++.||.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk---rsVRsvAw--sp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK---RSVRSVAW--SPHGRYLASASFDATVVIWK 89 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch---heeeeeee--cCCCcEEEEeeccceEEEee
Confidence 46889999998 899999999999999998853 222223 2566 89999999 78999999999999999998
Q ss_pred ccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEE
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~--~~v~~i~~~~~~~Vtsl~~~ 1194 (1354)
-.. +..+.+ .++.||...|.+ ++|+.+|++|++++.|+.|-||.+..+. .+...++.|... |..+ .+
T Consensus 90 k~~--~efecv---~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-VK~V-~W 158 (312)
T KOG0645|consen 90 KED--GEFECV---ATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-VKHV-IW 158 (312)
T ss_pred cCC--CceeEE---eeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-ccEE-EE
Confidence 765 555554 679999999999 9999999999999999999999987432 377888888777 8888 78
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~ 1274 (1354)
.|...+|++++.|.+|++|+-..+..-.. ...+.+|...|.+++|++. |..|++++.|++|+||-..+. .-.
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c-~~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~~~-----~~~ 230 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWEC-VQTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLYTD-----LSG 230 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeE-EEEecCccceEEEEEecCC--CceEEEecCCcceEeeeeccC-----cch
Confidence 88899999999999999999874332222 2256678899999999999 999999999999999987644 112
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---eEEEEeccCCccccccCCCeEEEEEecC-CCEEEEEECCCeE
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSADACV 1350 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~---~l~~i~~~h~~fl~~~~~~V~sLafspd-g~~Lasgs~Dg~V 1350 (1354)
.|...+..++|. ...||+++.|+.|++|..... ....+.. + ..+.|...|++++|.|. ...|++|+.||.|
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~-~--~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLA-K--KEGAHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHH-h--hhcccccccceEEEcCCCCCceeecCCCceE
Confidence 477889999998 558999999999999984321 1111100 0 01235578999999995 6899999999999
Q ss_pred EEcC
Q 000681 1351 SIHS 1354 (1354)
Q Consensus 1351 ~IWd 1354 (1354)
++|.
T Consensus 306 ~~W~ 309 (312)
T KOG0645|consen 306 NFWE 309 (312)
T ss_pred EEEE
Confidence 9994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=255.78 Aligned_cols=279 Identities=17% Similarity=0.259 Sum_probs=232.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
..|.-+.||++|++||+|+.|.+..||++... +..+++.+|. .+|..+.| +||.++|++|+.|..+++||+.
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMW--SPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc---CceEEEEE--CCCCCeEEecCchHheeeccCC
Confidence 67888999999999999999999999987644 4578888999 89999999 8999999999999999999998
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
+ +..... --.++...+.+ ++|.|++..+++|+.|+.|..||+.... ...+++....+|.++ ...++|
T Consensus 300 t--gd~~~~----y~~~~~~S~~s----c~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl-ait~Dg 366 (519)
T KOG0293|consen 300 T--GDLRHL----YPSGLGFSVSS----CAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL-AITYDG 366 (519)
T ss_pred c--chhhhh----cccCcCCCcce----eEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE-EEcCCC
Confidence 7 332211 01234455666 8999999999999999999999998765 666666666679999 778899
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
+++++.+.|..|++|+..+... ...... ..+|+++.++.+ ++++++.-.+..|++||+... ..+..+.+|+.
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~d-r~lise----~~~its~~iS~d--~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq 438 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVD-RGLISE----EQPITSFSISKD--GKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQ 438 (519)
T ss_pred cEEEEEecccceeeechhhhhh-hccccc----cCceeEEEEcCC--CcEEEEEcccCeeEEeecchh-hHHHHhhcccc
Confidence 9999999999999999887652 222222 268999999998 999999999999999999976 68888888865
Q ss_pred C--eEEEEEcC-CCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEc
Q 000681 1279 S--LSALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIH 1353 (1354)
Q Consensus 1279 ~--VtsLafsp-dg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IW 1353 (1354)
. +-.-+|-- +..++|+||.|+.|+||+ .+|+.+.++.+ |. ..|+|++|+|.. .++|++++||+|+||
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs-------~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HS-------KTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-Cc-------ceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 3 33334543 447999999999999999 78999999998 76 789999999977 789999999999999
Q ss_pred C
Q 000681 1354 S 1354 (1354)
Q Consensus 1354 d 1354 (1354)
.
T Consensus 511 g 511 (519)
T KOG0293|consen 511 G 511 (519)
T ss_pred c
Confidence 4
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=267.59 Aligned_cols=302 Identities=17% Similarity=0.249 Sum_probs=249.9
Q ss_pred eEEEeeCCCcEEEEeCCCC----------CCeEEEEE-cCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEE
Q 000681 1023 DLAVSKLNNPIACWDTRFE----------KGTKTALL-QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~----------~~I~sL~f-spdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~Its 1091 (1354)
.++.-..+..+.++|.++. +.|.+|+| .|++++|+++++.+.+++|+..+..+. .+.+|. ..|.+
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~---e~vlS 370 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT---EAVLS 370 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch---hheee
Confidence 4444455667888887764 77999997 568889999999999999988866554 789999 89999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC-CeEEEEECCCeEEEEEC
Q 000681 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDL 1170 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~-~~Lla~g~Dg~I~VWDl 1170 (1354)
+.. ..+|.+|+||+.|.++++|++..+..+. .+.....+|...|.+ ++.+..+ ..+++++.|+++++|++
T Consensus 371 L~~--~~~g~llat~sKD~svilWr~~~~~~~~---~~~a~~~gH~~svga----va~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 371 LDV--WSSGDLLATGSKDKSVILWRLNNNCSKS---LCVAQANGHTNSVGA----VAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred eee--cccCcEEEEecCCceEEEEEecCCcchh---hhhhhhcccccccce----eeecccCccEEEEecCCceEEEecC
Confidence 983 2567899999999999999994432332 233667899999988 5555444 45666789999999999
Q ss_pred CCCc--e--eee----eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec
Q 000681 1171 EKEQ--Q--MVN----PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242 (1354)
Q Consensus 1171 ~t~~--~--~v~----~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp 1242 (1354)
...+ . .+. +...| +..|+++ ...++.+++++|+.|.+.++|++.... ... .+.||...|.+|.|++
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aH-dKdIN~V-aia~ndkLiAT~SqDktaKiW~le~~~-l~~---vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAH-DKDINCV-AIAPNDKLIATGSQDKTAKIWDLEQLR-LLG---VLSGHTRGVWCVSFSK 515 (775)
T ss_pred CCcccccccceehhhHHHHhh-cccccce-EecCCCceEEecccccceeeecccCce-EEE---EeeCCccceEEEEecc
Confidence 8722 0 111 12234 4459999 788999999999999999999999554 333 4568889999999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCcc
Q 000681 1243 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSF 1321 (1354)
Q Consensus 1243 ~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~f 1321 (1354)
. ...++|+|.|++|+||.+.+. .+++++.+|...|..+.|-.+|..|++++.||.|+||+ -+++++.++.. |.
T Consensus 516 ~--dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~-- 589 (775)
T KOG0319|consen 516 N--DQLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HN-- 589 (775)
T ss_pred c--cceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-cc--
Confidence 9 999999999999999999998 79999999999999999999999999999999999999 46788888888 66
Q ss_pred ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1322 MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..|++++.++.+.+++||+.||.|.+|.
T Consensus 590 -----DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 590 -----DRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -----ceeEEEeecCccceeEecCCCeEEEEee
Confidence 8999999999999999999999999993
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=244.01 Aligned_cols=311 Identities=14% Similarity=0.204 Sum_probs=255.7
Q ss_pred eecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCC
Q 000681 1015 CQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF 1084 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~ 1084 (1354)
+...|....+++++.|+.-.+|+..++ ..|+++.|+.+|.+||||+-+|.|+||+..++.....+...-
T Consensus 70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~- 148 (399)
T KOG0296|consen 70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV- 148 (399)
T ss_pred EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc-
Confidence 344455567888999999999999987 789999999999999999999999999999998888876433
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCe
Q 000681 1085 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1164 (1354)
Q Consensus 1085 ~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~ 1164 (1354)
..|.-|.| .+.+..|+.|+.||.+-+|.+... +.. +.+.||..++++ -.|.|+|..++++..||+
T Consensus 149 --~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~-~~~------kv~~Gh~~~ct~----G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 149 --EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQ-ALC------KVMSGHNSPCTC----GEFIPDGKRILTGYDDGT 213 (399)
T ss_pred --CceEEEEe--cccccEEEeecCCCcEEEEECCCc-cee------eEecCCCCCccc----ccccCCCceEEEEecCce
Confidence 57888888 579999999999999999999652 222 347899999988 678899999999999999
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec----CCCCCCCCeEEEEE
Q 000681 1165 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR----PHTQQVERVVGISF 1240 (1354)
Q Consensus 1165 I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~----~~~~h~~~I~sv~f 1240 (1354)
|++||..+++ ++..+........+++ .....+..++.|..+|.+++-+..+++....... ...++...+.++.+
T Consensus 214 i~~Wn~ktg~-p~~~~~~~e~~~~~~~-~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 214 IIVWNPKTGQ-PLHKITQAEGLELPCI-SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred EEEEecCCCc-eeEEecccccCcCCcc-ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 9999999999 8888875444446777 5567888999999999999999888874333221 01123344445544
Q ss_pred ecC-CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccC
Q 000681 1241 QPG-LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHH 1318 (1354)
Q Consensus 1241 sp~-~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h 1318 (1354)
.|. ..-.+.|+|+.||+|.|||+... .++..-.|...|+.+.|-+ ..+|++++.||.|+.|| .+|+.+.++.+ |
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H 367 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG-H 367 (399)
T ss_pred cccccccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec-C
Confidence 443 11578899999999999999876 5666667999999999998 78999999999999999 78999999998 7
Q ss_pred CccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1319 PSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1319 ~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
. ..|.+++.+|++++++|++.|++.+||+
T Consensus 368 ~-------~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 368 Q-------MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred c-------hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 6 7899999999999999999999999984
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=265.75 Aligned_cols=289 Identities=15% Similarity=0.248 Sum_probs=237.6
Q ss_pred cEEEEeCCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000681 1032 PIACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1109 (1354)
Q Consensus 1032 ~I~iWd~~~~~~I~sL~fsp-dg~~Latgs~Dg~I~IWd~~t-g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D 1109 (1354)
.+..|.-.+ .+|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|. ..|.+++| +.+|..+++++.|
T Consensus 206 ~~~~~~gH~-kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~--s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHT-KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASF--NNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCc-cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhc--cccCCeeeeeecc
Confidence 345555332 7899999999 888999999999999999875 89999999999 89999999 7899999999999
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1188 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~-~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~V 1188 (1354)
+.|++||+++ |.... ..|...+.. ++.|+|++ +.+++|+.|+.|+.||+++++ .++.+..|-+. |
T Consensus 280 ~~lKlwDtET--G~~~~-------~f~~~~~~~---cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~-i 345 (503)
T KOG0282|consen 280 RFLKLWDTET--GQVLS-------RFHLDKVPT---CVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGA-I 345 (503)
T ss_pred eeeeeecccc--ceEEE-------EEecCCCce---eeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhh-e
Confidence 9999999987 43321 123333222 49999999 778888899999999999999 88888877666 9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-
Q 000681 1189 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK- 1267 (1354)
Q Consensus 1189 tsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~- 1267 (1354)
..+ .+-++|+.+++.+.|++++||+.+.+-.+...... +...+.++..+|+ +.++++-+.|..|.+|.+...-
T Consensus 346 ~~i-~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---~~hsmP~~~~~P~--~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 346 LDI-TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---EMHTMPCLTLHPN--GKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eee-EEccCCceEeeeccCccEEEEEcCCCccchhhcch---hhccCcceecCCC--CCeehhhccCceEEEEecccccc
Confidence 999 55578999999999999999999987643333222 2245778899999 9999999999999999875421
Q ss_pred -ccEEEEecCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCC-CEEE
Q 000681 1268 -DAYLTIDAHR--GSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLA 1342 (1354)
Q Consensus 1268 -~~v~~l~~h~--~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~La 1342 (1354)
...+.+.+|. +.-..+.|||||.+|++|+.||.+.+|| -+-+.+..++. |. +++..+.|||.. ..+|
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~-------~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HD-------QPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CC-------cceEEEEecCCCcceeE
Confidence 2345666774 5567789999999999999999999999 45667778887 65 789999999987 6899
Q ss_pred EEECCCeEEEcC
Q 000681 1343 AGSADACVSIHS 1354 (1354)
Q Consensus 1343 sgs~Dg~V~IWd 1354 (1354)
+|+.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999997
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=269.44 Aligned_cols=280 Identities=19% Similarity=0.321 Sum_probs=241.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..+..++|||..+.++++--.|.|++||+.-+.++..|..|. ++|..+.| .+.+.++++||+|-.|+||+..+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKT-- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC---Cccceeee--cCCCCeEEecCCccEEEEEeccc--
Confidence 578999999999999999999999999999999999999999 99999999 57999999999999999999855
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
. + +..++.||..-|+. +.|++.-..|+++++|.+|+||+..+++ ++..+.+|..- |.|. .|.|....+
T Consensus 83 r--r---clftL~GHlDYVRt----~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHY-VMcA-qFhptEDlI 150 (1202)
T KOG0292|consen 83 R--R---CLFTLLGHLDYVRT----VFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHY-VMCA-QFHPTEDLI 150 (1202)
T ss_pred c--e---ehhhhccccceeEE----eeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceE-EEee-ccCCccceE
Confidence 2 2 23568999999998 9999999999999999999999999999 99999998776 8888 677888999
Q ss_pred EEEECCCeEEEEECCCCCe-------------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000681 1202 AAGFVDGSVRLYDVRTPDM-------------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~-------------------------~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG 1256 (1354)
++++-|.+||+||+..-+. -..+.....||...|+-++|+|. -..|++|+.|.
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DDR 228 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADDR 228 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--cceEEecCCcc
Confidence 9999999999999863110 00111245689999999999998 89999999999
Q ss_pred cEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEE
Q 000681 1257 DIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF 1334 (1354)
Q Consensus 1257 ~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLaf 1334 (1354)
.|++|.+...+ -.+.+.++|.+.|+++-|||+..+|.+.|.|++|+|||++ ...+.+++- . .+..+.++-
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-e-------ndRFW~laa 300 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-E-------NDRFWILAA 300 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-c-------CCeEEEEEe
Confidence 99999987542 2355778999999999999999999999999999999966 455677764 2 267899999
Q ss_pred ecCCCEEEEEECCCeE
Q 000681 1335 HPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1335 spdg~~Lasgs~Dg~V 1350 (1354)
||..+++|+|.+.|.+
T Consensus 301 hP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 301 HPELNLFAAGHDSGMI 316 (1202)
T ss_pred cCCcceeeeecCCceE
Confidence 9999999998766544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=234.41 Aligned_cols=274 Identities=17% Similarity=0.282 Sum_probs=231.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|..+.|+-+|+|.++++.|.+|++||...|.+++++.+|. ..|.+++. +.|+..+++|+.|..|.+||+.+
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~T-- 90 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNT-- 90 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC---ceeeeccc--cccccccccCCCCceEEEEEccc--
Confidence 689999999999999999999999999999999999999999 89999998 67999999999999999999977
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~-~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
++. . +.+.+|...|+. +.|+.+...+++|+.|.++++||.++.. .+++.+....+. |.+|. -.+..
T Consensus 91 Gkv--~---Rr~rgH~aqVNt----V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-V~Si~---v~~he 157 (307)
T KOG0316|consen 91 GKV--D---RRFRGHLAQVNT----VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-VSSID---VAEHE 157 (307)
T ss_pred Cee--e---eecccccceeeE----EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-eeEEE---ecccE
Confidence 443 2 568999999998 9999999999999999999999998653 267777766666 88883 25789
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+++|+.||++|.||+|.+.....- + ..+|++++|+++ ++..+.++.|+++++.|-.++ +.+..+++|...-
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy---~---g~pit~vs~s~d--~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~e 228 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDY---F---GHPITSVSFSKD--GNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNME 228 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhh---c---CCcceeEEecCC--CCEEEEeeccceeeecccchh-HHHHHhcccccce
Confidence 999999999999999998833321 1 268999999999 999999999999999999998 7999999997643
Q ss_pred E--EEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCC-eEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1281 S--ALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS-VNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1281 t--sLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~-V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
. ..++......+++||.||.|.+|| .++..+..+.. +. .. |.++++||.-..+.++.. +.+..|
T Consensus 229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~-------~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VS-------TVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CC-------ceeEEeeecccCccceeEecC-Cceece
Confidence 3 445666777999999999999999 56777777765 44 34 899999999877777753 344444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-27 Score=254.84 Aligned_cols=272 Identities=17% Similarity=0.303 Sum_probs=223.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
.++|.|+.+ |+..+++|..|++|+|||..+...++.+.+|. +.|.|+.| +.+.|++|++|.+|+|||+.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy----d~rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT---GSVLCLQY----DERVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCC---CcEEeeec----cceEEEecCCCceEEEEeccC-
Confidence 378999987 45689999999999999999999999999999 99999999 677999999999999999977
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~--~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
++. + +++-+|...|.. +.|+ ++++++++.|.++.|||+.... .+.+.+.+|... |+.+.+ +.
T Consensus 267 -ge~--l---~tlihHceaVLh----lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvVdf---d~ 330 (499)
T KOG0281|consen 267 -GEP--L---NTLIHHCEAVLH----LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF---DD 330 (499)
T ss_pred -Cch--h---hHHhhhcceeEE----EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeeecc---cc
Confidence 322 2 557889888877 5554 7999999999999999998654 144556676655 888833 56
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
+++++++.|.+|++|++.+.+ .++ ...+|...|.|+.+. ++++++|+.|.+|++||+..+ .+++.+++|..
T Consensus 331 kyIVsASgDRTikvW~~st~e-fvR---tl~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEe 401 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-FVR---TLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 401 (499)
T ss_pred ceEEEecCCceEEEEecccee-eeh---hhhcccccceehhcc----CeEEEecCCCceEEEEecccc-HHHHHHhchHH
Confidence 799999999999999999988 454 445777999988863 889999999999999999999 79999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEE----EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLG----TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1279 ~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~----~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
-|.|+.|. .+.|++|+.||+|+|||+. +.... ++.- . -+..|.+.|..+.| |...+++++.|.+|.||
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl-~--~lv~hsgRVFrLQF--D~fqIvsssHddtILiW 474 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCL-R--TLVEHSGRVFRLQF--DEFQIISSSHDDTILIW 474 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHH-H--hhhhccceeEEEee--cceEEEeccCCCeEEEE
Confidence 99999995 5789999999999999954 22111 1000 0 02245689999999 56688899999999999
Q ss_pred C
Q 000681 1354 S 1354 (1354)
Q Consensus 1354 d 1354 (1354)
|
T Consensus 475 d 475 (499)
T KOG0281|consen 475 D 475 (499)
T ss_pred E
Confidence 7
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=245.93 Aligned_cols=316 Identities=16% Similarity=0.257 Sum_probs=251.0
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC-------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~ 1077 (1354)
.++...+++++..+++.+.|+.+.+||-+++ ..|.+++|+||+..++|++.|.+++|||+.++++++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 4778899999999999999999999999886 679999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEE
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1157 (1354)
Q Consensus 1078 ~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Ll 1157 (1354)
++.....-...-..+.| .+..|++.+.+|+|.+++... .... +.+.+|...|++ +..++++.+|+
T Consensus 272 t~~~~~~v~dqqvG~lW----qkd~lItVSl~G~in~ln~~d--~~~~-----~~i~GHnK~ITa----Ltv~~d~~~i~ 336 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLW----QKDHLITVSLSGTINYLNPSD--PSVL-----KVISGHNKSITA----LTVSPDGKTIY 336 (603)
T ss_pred EeecCCchhceEEEEEE----eCCeEEEEEcCcEEEEecccC--CChh-----heecccccceeE----EEEcCCCCEEE
Confidence 98766522233445556 378899999999999999866 2222 447999999998 88889999999
Q ss_pred EEECCCeEEEEECCCCce----------ee--------------------eeecC-------C---------------C-
Q 000681 1158 ASGEVSSIMLWDLEKEQQ----------MV--------------------NPIPS-------S---------------S- 1184 (1354)
Q Consensus 1158 a~g~Dg~I~VWDl~t~~~----------~v--------------------~~i~~-------~---------------~- 1184 (1354)
+|+.||.|.-||..++.. .+ +.+.. + .
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 999999999999876540 00 00000 0 0
Q ss_pred --------------------------CCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000681 1185 --------------------------DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1185 --------------------------~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv 1238 (1354)
.-...++ +.+++++.+++|+.||.|++|.+..... .... ....|.+.|+++
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v-Av~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~-~~~~h~a~iT~v 493 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAV-AVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEA-KLLEHRAAITDV 493 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceE-EEcCCCCEEEEecccceEEEEEecCCcc-ccee-eeecccCCceEE
Confidence 0012334 5567889999999999999999987552 2111 233677999999
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceEEEEecc
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYH 1317 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i~~~ 1317 (1354)
+++|+ +.+|++|...+.|.+||..+.......+.-|...|.+++|+|+..++|+||-|-.|.||+++. .....+++.
T Consensus 494 aySpd--~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA 571 (603)
T KOG0318|consen 494 AYSPD--GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA 571 (603)
T ss_pred EECCC--CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc
Confidence 99999 999999999999999999987444445556999999999999999999999999999999653 222334443
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1318 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1318 h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|. ..|+.+.|- +...+++.+.|..|++|+
T Consensus 572 H~-------~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 572 HL-------GGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred cc-------cCceeEEEe-cCceEEeccCcceeEEec
Confidence 54 559999997 445788888999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=246.94 Aligned_cols=269 Identities=19% Similarity=0.324 Sum_probs=233.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceEEEee
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFD 1080 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t-g~~l~~~~ 1080 (1354)
+....+.++...++++..+.+|++||..++ +.+.+++|+..|++||+++.|-.+++||.++ .++++...
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~ 190 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI 190 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc
Confidence 344455677777888889999999999987 6799999999999999999999999999986 47778888
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
+|. ..|.+++|. |.|.++++++.|.+|+.|++.+ +-. ..++.+|...|+. +..+++|..+++++
T Consensus 191 gh~---h~vS~V~f~--P~gd~ilS~srD~tik~We~~t--g~c-----v~t~~~h~ewvr~----v~v~~DGti~As~s 254 (406)
T KOG0295|consen 191 GHE---HGVSSVFFL--PLGDHILSCSRDNTIKAWECDT--GYC-----VKTFPGHSEWVRM----VRVNQDGTIIASCS 254 (406)
T ss_pred Ccc---cceeeEEEE--ecCCeeeecccccceeEEeccc--cee-----EEeccCchHhEEE----EEecCCeeEEEecC
Confidence 888 899999995 5789999999999999999976 322 2568999998887 88888998999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC--------------CCCEEEEEECCCeEEEEECCCCCeeeEeec
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1226 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~--------------~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~ 1226 (1354)
.|.+|++|-+.+++ |...++.|.-. |.++++.+. .+.++.+|+.|++|++||+.++..+.
T Consensus 255 ~dqtl~vW~~~t~~-~k~~lR~hEh~-vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~---- 328 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQ-CKAELREHEHP-VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF---- 328 (406)
T ss_pred CCceEEEEEeccch-hhhhhhccccc-eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE----
Confidence 99999999999998 77888776554 777744221 13589999999999999999998544
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1227 ~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
++.+|..+|..++|+|. |++|+++..|+++++||+++. .+..++..|..-+++++||.+..++++|+-|.++++|.
T Consensus 329 tL~ghdnwVr~~af~p~--Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPG--GKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEecccceeeeeEEcCC--CeEEEEEecCCcEEEEEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 33478899999999999 999999999999999999998 79999999999999999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=255.21 Aligned_cols=270 Identities=15% Similarity=0.236 Sum_probs=235.4
Q ss_pred hhhheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEe
Q 000681 1010 EHIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1079 (1354)
Q Consensus 1010 e~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~ 1079 (1354)
+++...++.+-+..++.+--.|.+.+||.++. .+|++.+|-.-.+.+++|++|..|+||++.+++.++.|
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 45777788888889999999999999999986 67888888888899999999999999999999999999
Q ss_pred eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC-CeEEE
Q 000681 1080 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYA 1158 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~-~~Lla 1158 (1354)
..|. .-|.+++. .|...+++|+++|-+|++||... ...+ -+++.||..-|.+ ++|+|.+ +.+++
T Consensus 94 eAH~---DyIR~iav--HPt~P~vLtsSDDm~iKlW~we~---~wa~---~qtfeGH~HyVMq----v~fnPkD~ntFaS 158 (794)
T KOG0276|consen 94 EAHS---DYIRSIAV--HPTLPYVLTSSDDMTIKLWDWEN---EWAC---EQTFEGHEHYVMQ----VAFNPKDPNTFAS 158 (794)
T ss_pred eccc---cceeeeee--cCCCCeEEecCCccEEEEeeccC---ceee---eeEEcCcceEEEE----EEecCCCccceee
Confidence 9999 89999999 57899999999999999999854 3333 3678999998887 8999865 56777
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC-CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000681 1159 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH-GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~-g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~s 1237 (1354)
++-|++|+||.+.+.. +..++.+|... |+|+.+++.+ .-++++|+.|.+|+|||..+.. +++ ++.||...|..
T Consensus 159 ~sLDrTVKVWslgs~~-~nfTl~gHekG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~---TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPH-PNFTLEGHEKG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQ---TLEGHTNNVSF 232 (794)
T ss_pred eeccccEEEEEcCCCC-CceeeeccccC-cceEEeccCCCcceEEecCCCceEEEeecchHH-HHH---HhhcccccceE
Confidence 8899999999999999 99999988777 9999776533 2499999999999999999887 444 55688899999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000681 1238 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1238 v~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
+.|+|. -.++++||.||++|||+..+- ....++...-+.++|++-++.+..++.|..+|.|.|
T Consensus 233 v~fhp~--lpiiisgsEDGTvriWhs~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 233 VFFHPE--LPIIISGSEDGTVRIWNSKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCC--CcEEEEecCCccEEEecCcce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999 999999999999999999887 466777777789999999999889999988887654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=247.81 Aligned_cols=244 Identities=23% Similarity=0.390 Sum_probs=216.1
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
..+.+++|. +.|.++++ +|.+.++++|+.|++|+|||+.+ ++.++. +.||...|+. +++++...
T Consensus 143 l~rVi~gHl---gWVr~vav--dP~n~wf~tgs~DrtikIwDlat--g~Lklt-----ltGhi~~vr~----vavS~rHp 206 (460)
T KOG0285|consen 143 LYRVISGHL---GWVRSVAV--DPGNEWFATGSADRTIKIWDLAT--GQLKLT-----LTGHIETVRG----VAVSKRHP 206 (460)
T ss_pred ehhhhhhcc---ceEEEEee--CCCceeEEecCCCceeEEEEccc--CeEEEe-----ecchhheeee----eeecccCc
Confidence 345577888 99999999 78899999999999999999987 655554 8999999999 89999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
++++++.|+.|+.||++..+ .++.+.+|-.. |.|+ ...|.-..+++|+.|.++|+||+|+...+ . .+.||...
T Consensus 207 YlFs~gedk~VKCwDLe~nk-vIR~YhGHlS~-V~~L-~lhPTldvl~t~grDst~RvWDiRtr~~V-~---~l~GH~~~ 279 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNK-VIRHYHGHLSG-VYCL-DLHPTLDVLVTGGRDSTIRVWDIRTRASV-H---VLSGHTNP 279 (460)
T ss_pred eEEEecCCCeeEEEechhhh-hHHHhccccce-eEEE-eccccceeEEecCCcceEEEeeecccceE-E---EecCCCCc
Confidence 99999999999999999999 99999998877 9999 56678889999999999999999998843 3 34578899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEE
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGT 1313 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~ 1313 (1354)
|.++.+.|. ...+++||.|++|++||++.+ ....++..|+..|.+++.||....+|+++.|. |+-|+ -.|..+..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN 355 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence 999999998 889999999999999999999 58888999999999999999999999999874 89999 46777777
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1314 i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.+ |. +.|++++.+.|+ ++++|++.|.+.+||
T Consensus 356 lsg-h~-------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 LSG-HN-------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ccc-cc-------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 776 55 789999998776 777899999999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=235.86 Aligned_cols=285 Identities=19% Similarity=0.300 Sum_probs=227.2
Q ss_pred CeEEEEEcCCC-CEEEEEE-------CCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000681 1043 GTKTALLQPFS-PIVVAAD-------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1043 ~I~sL~fspdg-~~Latgs-------~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrI 1114 (1354)
.=.++.|||.- ++|+++. ..|.+.|-+...++-+..+..-. ....+.+++|. +...+.+++++.||++++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Ws-e~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWS-ENHENQVIAASGDGSLRL 87 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeec-CCCcceEEEEecCceEEE
Confidence 34679999954 3555442 57899999987554444433221 12589999995 456778999999999999
Q ss_pred EEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~-Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
||..... .+++.+++|...|.+ ++|++..+. +++++.|++|++||..... .+.++.+|... |....+
T Consensus 88 ~d~~~~s------~Pi~~~kEH~~EV~S----vdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~-Iy~a~~ 155 (311)
T KOG0277|consen 88 FDLTMPS------KPIHKFKEHKREVYS----VDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSC-IYQAAF 155 (311)
T ss_pred eccCCCC------cchhHHHhhhhheEE----eccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccE-EEEEec
Confidence 9964321 133668999999998 999987655 5566799999999999998 89999997665 988867
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEE
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l 1273 (1354)
.+..++.+++++.||.+++||+|...+... + ..|...|.++.|+.. +.+.++||+.|+.|++||+++.+.++..+
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeE-E---EeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceee
Confidence 777889999999999999999997653333 3 245689999999987 78899999999999999999988999999
Q ss_pred ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC-Cc-eEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCe
Q 000681 1274 DAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE-GE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADAC 1349 (1354)
Q Consensus 1274 ~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~-g~-~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~ 1349 (1354)
.+|.-.|+.+.|||+.. +||+++.|-+++|||.. +. .+.+... |. .-|..+.|++.. .++|+++.|+.
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-Ht-------EFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HT-------EFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cc-------eEEeccccccccCceeeecccccc
Confidence 99999999999999754 99999999999999954 33 3344443 55 568889998754 78999999999
Q ss_pred EEEcC
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 V~IWd 1354 (1354)
++||+
T Consensus 303 l~Vw~ 307 (311)
T KOG0277|consen 303 LYVWN 307 (311)
T ss_pred eeeec
Confidence 99996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=239.38 Aligned_cols=269 Identities=19% Similarity=0.284 Sum_probs=228.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~ 1080 (1354)
|...++.+++.-+++++.|..|-+|+.... ..|..+.|..|+..+++++.|.+|+.||.++|+.++.++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 677889999999999999999999995432 779999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
+|. .-|+++.-. .-...++.+|++||++++||++.. +.+ +++ .....+++ +.|.+.+..+++|+
T Consensus 130 ~h~---~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k----~~~---~t~-~~kyqltA----v~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 130 GHT---SFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKK----EAI---KTF-ENKYQLTA----VGFKDTSDQVISGG 193 (338)
T ss_pred ccc---ceeeecCcc-ccCCeEEEecCCCceEEEEeeccc----chh---hcc-ccceeEEE----EEecccccceeecc
Confidence 999 778877732 234567788899999999999651 111 112 12333445 89999999999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCC---CeeeEeecCCCCCC--CCe
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP---DMLVCSTRPHTQQV--ERV 1235 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~---~~~~~~~~~~~~h~--~~I 1235 (1354)
-|+.|++||+++.. ....+.+|.+. |+.+ +.+++|..+.+-+.|.++++||+|.. ++.+.++..+ .|. ...
T Consensus 194 Idn~ikvWd~r~~d-~~~~lsGh~Dt-It~l-sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-~hnfeknl 269 (338)
T KOG0265|consen 194 IDNDIKVWDLRKND-GLYTLSGHADT-ITGL-SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-IHNFEKNL 269 (338)
T ss_pred ccCceeeeccccCc-ceEEeecccCc-eeeE-EeccCCCccccccccceEEEEEecccCCCCceEEEeecc-hhhhhhhc
Confidence 99999999999999 99999999887 9999 88999999999999999999999953 3345555433 232 345
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
..++|+|+ +..+..|+.|..+++||.... ..+..+.+|.+.|.+++|||..++|.+++.|.+|.+
T Consensus 270 L~cswsp~--~~~i~ags~dr~vyvwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 270 LKCSWSPN--GTKITAGSADRFVYVWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ceeeccCC--CCccccccccceEEEeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 67889999 999999999999999999876 689999999999999999999999999999999876
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=238.92 Aligned_cols=269 Identities=21% Similarity=0.374 Sum_probs=228.2
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~ 1080 (1354)
.+....+.+++..++++..++.+.+|+...+ ..+..+.|+++++++++++.+|.|++||+.+++.+..+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~ 90 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe
Confidence 4566777788788889988999999998754 567799999999999999999999999999988888898
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
.|. ..|.++.| .+++.++++++.||.|++||+.+ ++ .. ..+..|...+.+ +.|++++..+++++
T Consensus 91 ~~~---~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~--~~--~~---~~~~~~~~~i~~----~~~~~~~~~l~~~~ 154 (289)
T cd00200 91 GHT---SYVSSVAF--SPDGRILSSSSRDKTIKVWDVET--GK--CL---TTLRGHTDWVNS----VAFSPDGTFVASSS 154 (289)
T ss_pred ccC---CcEEEEEE--cCCCCEEEEecCCCeEEEEECCC--cE--EE---EEeccCCCcEEE----EEEcCcCCEEEEEc
Confidence 888 78999999 56778888888899999999964 22 22 234567777777 89999877777777
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1240 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~f 1240 (1354)
.+|.|++||+++++ .+..+..+... |.++ .+.++++.+++++.||.|++||++.++ ....+ ..|...+.++.|
T Consensus 155 ~~~~i~i~d~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~---~~~~~~i~~~~~ 227 (289)
T cd00200 155 QDGTIKLWDLRTGK-CVATLTGHTGE-VNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL---RGHENGVNSVAF 227 (289)
T ss_pred CCCcEEEEEccccc-cceeEecCccc-cceE-EECCCcCEEEEecCCCcEEEEECCCCc-eecch---hhcCCceEEEEE
Confidence 79999999999888 77777766544 9999 677888899999999999999999866 33332 355679999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1241 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1241 sp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+++ +.++++++.||.|++||+.++ .....+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 228 ~~~--~~~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 228 SPD--GYLLASGSEDGTIRVWDLRTG-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCC--CcEEEEEcCCCcEEEEEcCCc-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 998 899999988999999999987 68888889999999999999999999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=248.58 Aligned_cols=251 Identities=20% Similarity=0.340 Sum_probs=211.8
Q ss_pred eEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEE
Q 000681 1023 DLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKL 1092 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL 1092 (1354)
.++++.-|.+|++||...- +.|.|+.| +.+.+++|+.|.+|+|||+++|+.++++-.|. ..|..+
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHc---eaVLhl 283 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC---EAVLHL 283 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhc---ceeEEE
Confidence 3555666779999998763 56777766 45699999999999999999999999999999 899999
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCC
Q 000681 1093 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1172 (1354)
Q Consensus 1093 ~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t 1172 (1354)
.| +++++++++.|.+|+|||+.... -++..+.+.||...|.. +.|+ +.++++++.|.+|++|++.+
T Consensus 284 rf----~ng~mvtcSkDrsiaVWdm~sps----~it~rrVLvGHrAaVNv----Vdfd--~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 284 RF----SNGYMVTCSKDRSIAVWDMASPT----DITLRRVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred EE----eCCEEEEecCCceeEEEeccCch----HHHHHHHHhhhhhheee----eccc--cceEEEecCCceEEEEeccc
Confidence 99 56899999999999999996522 22333668899999987 7774 56999999999999999999
Q ss_pred CceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000681 1173 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1252 (1354)
Q Consensus 1173 ~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasg 1252 (1354)
.. +++++.+|..+ |-|+ +..|+++++|+.|.+|++||+..+. ..+ .+.||..-|.++.|. .+.+++|
T Consensus 350 ~e-fvRtl~gHkRG-IACl---QYr~rlvVSGSSDntIRlwdi~~G~-cLR---vLeGHEeLvRciRFd----~krIVSG 416 (499)
T KOG0281|consen 350 CE-FVRTLNGHKRG-IACL---QYRDRLVVSGSSDNTIRLWDIECGA-CLR---VLEGHEELVRCIRFD----NKRIVSG 416 (499)
T ss_pred ee-eehhhhccccc-ceeh---hccCeEEEecCCCceEEEEeccccH-HHH---HHhchHHhhhheeec----Cceeeec
Confidence 99 99999999877 7776 5579999999999999999999998 444 445788999999995 5699999
Q ss_pred ECCCcEEEEeCCCCCc--------cEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1253 SQAGDIQFLDIRNHKD--------AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1253 s~DG~I~IWDl~~~~~--------~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+.||+|++||+..+.. ++.++..|.+.|..+.|. ...|++++.|.+|.|||+.
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 9999999999986532 455667799999999995 4678899999999999954
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=262.79 Aligned_cols=274 Identities=19% Similarity=0.393 Sum_probs=233.4
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCceEEE
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNS 1078 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~-~tg~~l~~ 1078 (1354)
+....+++++..++.+..++.+++|+.... ..|.+++|+|++.++++|+.|++|+|||. +.+..+++
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 455788999999999999999999999221 67999999999999999999999999999 56689999
Q ss_pred eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1079 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1079 ~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
+++|. ..|++++| +++++++++|+.|++|||||+.+ ++.. +.+.+|...|.+ ++|++++..|++
T Consensus 242 l~gH~---~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~--~~~~-----~~l~~hs~~is~----~~f~~d~~~l~s 305 (456)
T KOG0266|consen 242 LKGHS---TYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRT--GECV-----RKLKGHSDGISG----LAFSPDGNLLVS 305 (456)
T ss_pred ecCCC---CceEEEEe--cCCCCEEEEecCCCcEEEEeccC--CeEE-----EeeeccCCceEE----EEECCCCCEEEE
Confidence 99999 89999999 68889999999999999999966 3332 558999999998 899999999999
Q ss_pred EECCCeEEEEECCCCcee--eeeecCCCCC-CeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1159 SGEVSSIMLWDLEKEQQM--VNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~~--v~~i~~~~~~-~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
++.||.|++||+.++. . +..+..+... +++++ .+++++.++++++.|+.+++||++.+. ....+..+..-...+
T Consensus 306 ~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~-~fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGS-KLCLKLLSGAENSAPVTSV-QFSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCI 382 (456)
T ss_pred cCCCccEEEEECCCCc-eeeeecccCCCCCCceeEE-EECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCcceeE
Confidence 9999999999999988 4 3566655554 68888 888999999999999999999999887 344333332111134
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSALAVHRHAPIIASGS--AKQLIKVFSLE 1307 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-~~~VtsLafspdg~~Lasgs--~Dg~I~Iwd~~ 1307 (1354)
.+...++. +.++++|+.|+.|++||+.++ ..+..+.+| ...+..+++|+..+++++++ .|+.|++|..+
T Consensus 383 ~~~~~~~~--~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 383 FSPTLSTG--GKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecccccCC--CCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 44455666 999999999999999999987 688899999 89999999999999999998 78999999754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=235.83 Aligned_cols=282 Identities=17% Similarity=0.255 Sum_probs=230.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEEccC
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~-d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
...|.++... ++++++|+.||.++|||.. |+....+.+|. ++|.++.|+... ....+++++.|.++++|....
T Consensus 105 dDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 105 DDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred hhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3567777776 7899999999999999987 89999999999 899999987422 234799999999999999876
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc------------------------e
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------------------------Q 1175 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~------------------------~ 1175 (1354)
.....+.. +.-.||...|.+ +..++++..+++|+.|..|+||+..+.. .
T Consensus 179 ~~~~~~~~---~~~~GHk~~V~s----Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 179 GENKVKAL---KVCRGHKRSVDS----VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred chhhhhHH---hHhcccccceeE----EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 43333322 445699999998 7888899999999999999999932211 1
Q ss_pred eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000681 1176 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1255 (1354)
Q Consensus 1176 ~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D 1255 (1354)
++.++.+|... |.++ .+++ ...+++++.|.+|+.||+.++....... + ...+.++..+|. .++|++|+.|
T Consensus 252 P~vtl~GHt~~-Vs~V-~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~----~ksl~~i~~~~~--~~Ll~~gssd 321 (423)
T KOG0313|consen 252 PLVTLEGHTEP-VSSV-VWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-T----NKSLNCISYSPL--SKLLASGSSD 321 (423)
T ss_pred ceEEecccccc-eeeE-EEcC-CCceEeecccceEEEEEeecccceeeee-c----CcceeEeecccc--cceeeecCCC
Confidence 45566677665 9999 5544 7789999999999999999988443332 2 267999999998 9999999999
Q ss_pred CcEEEEeCCCCC--ccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC--CceEEEEeccCCccccccCCCeE
Q 000681 1256 GDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVN 1330 (1354)
Q Consensus 1256 G~I~IWDl~~~~--~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~ 1330 (1354)
..|++||.|++. ....++.+|.+.|.++.|+|... .|++|+.|+++++||+. ..++..+.. |. ..|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~-------DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HN-------DKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CC-------ceEE
Confidence 999999999764 45578889999999999999766 78999999999999954 347888887 65 8899
Q ss_pred EEEEecCCCEEEEEECCCeEEEcC
Q 000681 1331 CLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1331 sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
++.|+ ++..+++||.|++|+|+.
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEecc-CCceEEeccCcceEEEec
Confidence 99997 567999999999999973
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=245.72 Aligned_cols=276 Identities=17% Similarity=0.299 Sum_probs=231.6
Q ss_pred CCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~-Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
..|++++|+|..++ +|+++ .-.+.||+..+....+++.-.. ..+.++.| -.||.+|++|+..|.|+|||..+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~- 99 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKS- 99 (487)
T ss_pred CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---cceeEEEe--ecCCeEEEccCCcCcEEEecccc-
Confidence 68999999997763 55555 5679999988877777666555 78999999 58999999999999999999533
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
. ...+.+.+|..++.. +.|++.++.+++. ++|+.+++||+.+.. ...++.+|.+. |.|.++.+.++.
T Consensus 100 ---r---~iLR~~~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDY-VR~g~~~~~~~h 167 (487)
T KOG0310|consen 100 ---R---VILRQLYAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDY-VRCGDISPANDH 167 (487)
T ss_pred ---H---HHHHHHhhccCceeE----EEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcce-eEeeccccCCCe
Confidence 1 123678999999988 8899888776665 578899999999988 66688898887 999988877888
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1279 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~ 1279 (1354)
++++|+.||.||+||+|.....+..+ .|..+|.++.+-|. |..|++++. ..|++||+-++++.+.....|...
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lps--gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPS--GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCC--CCEEEEcCC-CeEEEEEecCCceehhhhhcccce
Confidence 99999999999999999875344443 56799999999998 899999875 479999999776666666679999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1280 LSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1280 VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
|+|+.+..++..|.+|+-|+.|++||+ +-+.+..+++ .++|.+++.+|+++.++.|-.||.+.+
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecCCCceEEEecccceeee
Confidence 999999999999999999999999994 4566667765 379999999999999999999998764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=250.62 Aligned_cols=272 Identities=20% Similarity=0.315 Sum_probs=230.2
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
+....+.+....++++--.+.|.+||.+-+ ++|..+.|||.++++++|++|-.|+||++.+.+++.++.+
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence 455677777788999999999999999875 8899999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~ 1161 (1354)
|- .-|..+.| .+.-.+++++|+|.+||||+..+ ++.. ..++||..-|.| ..|+|....+++++-
T Consensus 92 Hl---DYVRt~~F--HheyPWIlSASDDQTIrIWNwqs--r~~i-----avltGHnHYVMc----AqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 92 HL---DYVRTVFF--HHEYPWILSASDDQTIRIWNWQS--RKCI-----AVLTGHNHYVMC----AQFHPTEDLIVSASL 155 (1202)
T ss_pred cc---ceeEEeec--cCCCceEEEccCCCeEEEEeccC--CceE-----EEEecCceEEEe----eccCCccceEEEecc
Confidence 99 89999999 47889999999999999999966 3333 348999998888 899999999999999
Q ss_pred CCeEEEEECCCCc---------------------------eeee-eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEE
Q 000681 1162 VSSIMLWDLEKEQ---------------------------QMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1213 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~---------------------------~~v~-~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIw 1213 (1354)
|.+|||||+..-+ ..++ .+.+| +..|+-+ ++.|.-..+++|+.|..|++|
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwa-AfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWA-AFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc-ccccceE-EecCCcceEEecCCcceeeEE
Confidence 9999999986321 0112 23344 4448877 677778899999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEE
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~La 1293 (1354)
.+...+ .. ...+..||.+.|.++-|+|. .+.+++.|.|++|+|||+... ..+.+++-..+..+.++.||..+++|
T Consensus 234 rmnetK-aW-EvDtcrgH~nnVssvlfhp~--q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 234 RMNETK-AW-EVDTCRGHYNNVSSVLFHPH--QDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFA 308 (1202)
T ss_pred Eecccc-ce-eehhhhcccCCcceEEecCc--cceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceee
Confidence 987655 22 23366789999999999999 999999999999999999887 79999988888999999999999998
Q ss_pred EEeCCCcEEEEeCC
Q 000681 1294 SGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1294 sgs~Dg~I~Iwd~~ 1307 (1354)
+|-..| +.||.++
T Consensus 309 AgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 309 AGHDSG-MIVFKLE 321 (1202)
T ss_pred eecCCc-eEEEEEc
Confidence 876544 5566643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=237.40 Aligned_cols=281 Identities=17% Similarity=0.331 Sum_probs=242.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee--------CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD--------NHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~--------~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
..+.|..|+|||++|++|+.||-|.|||+.+|+..+.++ -+. ..|.|+.| +.|..+|++|+.||.|+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~F--SRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISF--SRDSEMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEee--cccHHHhhccCcCCcEE
Confidence 568899999999999999999999999999997655433 344 78999999 78999999999999999
Q ss_pred EEEccCCCCcceEEeeeecc-cCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1114 IWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l-~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
||.+.+ |.+ .+.+ ..|...|++ +.|+.++..+++++.|.++++.-+.+++ +++.+++|++. |+..
T Consensus 289 vWri~t--G~C-----lRrFdrAHtkGvt~----l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSy-vn~a- 354 (508)
T KOG0275|consen 289 VWRIET--GQC-----LRRFDRAHTKGVTC----LSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSY-VNEA- 354 (508)
T ss_pred EEEEec--chH-----HHHhhhhhccCeeE----EEEccCcchhhcccccceEEEeccccch-hHHHhcCcccc-ccce-
Confidence 999977 322 1333 479999988 9999999999999999999999999999 99999999876 8888
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEE
Q 000681 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1272 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~ 1272 (1354)
.+.++|+.+++++.||+|++|+..+.+ +...++.. +....|.++..-|. +...++++....+|.|.++.. +.+++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~-~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~qG--QvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPL-GTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNMQG--QVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchh-hhhhccCC-CCcccceeEEEcCC-CCceEEEEcCCCeEEEEeccc--eEEee
Confidence 778899999999999999999999988 55556444 45678999999898 688899999999999999874 47777
Q ss_pred EecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000681 1273 IDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1273 l~~h---~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
+... .+...+...+|.|.++.+.+.|+.++.|. .+|..-.++.. |+ ..|..++-||+.+.||+-+.||
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hE-------kdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HE-------KDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cc-------ccccccccCcccchhhhhcccc
Confidence 7643 45677888999999999999999999999 67887777777 65 6788999999999999999999
Q ss_pred eEEEcC
Q 000681 1349 CVSIHS 1354 (1354)
Q Consensus 1349 ~V~IWd 1354 (1354)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=238.61 Aligned_cols=273 Identities=17% Similarity=0.272 Sum_probs=244.2
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC------------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE------------------KGTKTALLQPFSPIVVAADENERIKIWNYEE 1072 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t 1072 (1354)
+....++++++..++++..|+.|.+||+.++ ..|.|+.|+.|..+||+|+.||.|+||.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 4556689999999999999999999999887 7899999999999999999999999999999
Q ss_pred CceEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec
Q 000681 1073 DTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ 1151 (1354)
Q Consensus 1073 g~~l~~~~-~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp 1151 (1354)
|.+++.|. .|. ..|+++.| +.|+..+++++.|.++||.-+.. |+. .+.+.||..-|+. ..|.+
T Consensus 295 G~ClRrFdrAHt---kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKS--GK~-----LKEfrGHsSyvn~----a~ft~ 358 (508)
T KOG0275|consen 295 GQCLRRFDRAHT---KGVTCLSF--SRDNSQILSASFDQTVRIHGLKS--GKC-----LKEFRGHSSYVNE----ATFTD 358 (508)
T ss_pred chHHHHhhhhhc---cCeeEEEE--ccCcchhhcccccceEEEecccc--chh-----HHHhcCccccccc----eEEcC
Confidence 99999998 788 89999999 78999999999999999998866 332 2568999999998 88999
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCC
Q 000681 1152 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ 1230 (1354)
Q Consensus 1152 ~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~-~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~ 1230 (1354)
+|.++++++.||+|+||+..+.. |+.+++. ..+.+|.++..++.+...++++...++|.+-++.. + +++.+.....
T Consensus 359 dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q-vVrsfsSGkR 435 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q-VVRSFSSGKR 435 (508)
T ss_pred CCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e-EEeeeccCCc
Confidence 99999999999999999999999 9999874 34567899988888889999999999999998864 3 5666655444
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
..+...+...+|. |.++.+.+.|+.++.|...++ ..-.++..|...+..++-||+.+.||+-+.||.+++|.
T Consensus 436 EgGdFi~~~lSpk--GewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 436 EGGDFINAILSPK--GEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCceEEEEecCC--CcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 5677888899999 999999999999999999998 58889999999999999999999999999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=222.85 Aligned_cols=264 Identities=16% Similarity=0.300 Sum_probs=220.7
Q ss_pred ecCCC-CceEEEeeCCCcEEEEeCCCC--------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceEEE
Q 000681 1016 QRSCN-SFDLAVSKLNNPIACWDTRFE--------------KGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNS 1078 (1354)
Q Consensus 1016 q~~~~-~~~L~~s~~d~~I~iWd~~~~--------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg--~~l~~ 1078 (1354)
...+. +..+++++.|..|++|+...+ ..|++++|+|.|++|++|+.|.++.||.-..+ +.+.+
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~ 100 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT 100 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee
Confidence 33444 557899999999999999842 67999999999999999999999999977654 78889
Q ss_pred eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1079 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1079 ~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
+.+|. ..|.+++| +.+|++|+|++.|+.|-||.+.. .++.+.. ..+++|...|.. +.|+|....|++
T Consensus 101 lEGHE---nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~de-ddEfec~---aVL~~HtqDVK~----V~WHPt~dlL~S 167 (312)
T KOG0645|consen 101 LEGHE---NEVKCVAW--SASGNYLATCSRDKSVWIWEIDE-DDEFECI---AVLQEHTQDVKH----VIWHPTEDLLFS 167 (312)
T ss_pred eeccc---cceeEEEE--cCCCCEEEEeeCCCeEEEEEecC-CCcEEEE---eeeccccccccE----EEEcCCcceeEE
Confidence 99999 99999999 78999999999999999999964 3444433 668999999998 999999999999
Q ss_pred EECCCeEEEEECCC-Cc-eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000681 1159 SGEVSSIMLWDLEK-EQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1236 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t-~~-~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~ 1236 (1354)
++.|.+|++|+-.. +. .++.++.+|+.. |.++ .|.+.|..+++++.|++|+||-..+.- ...|+..+.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c~~tl~g~~~T-VW~~-~F~~~G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y 237 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWECVQTLDGHENT-VWSL-AFDNIGSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALY 237 (312)
T ss_pred eccCCeEEEEeecCCCCeeEEEEecCccce-EEEE-EecCCCceEEEecCCcceEeeeeccCc--------chhcccceE
Confidence 99999999998762 21 388999998876 9999 778899999999999999999877332 113568899
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCC-Ccc-----EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDA-----YLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~-~~~-----v~~l~~h~~~VtsLafspd-g~~Lasgs~Dg~I~Iwd~ 1306 (1354)
.+.|. + ..|++|+.|+.|++|..... ..+ ...-..|...|+++.|.|. ...|++|+.||.|++|.+
T Consensus 238 ~v~W~-~---~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 238 DVPWD-N---GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeeec-c---cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99997 3 58999999999999986642 111 1233468889999999995 679999999999999975
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=236.13 Aligned_cols=268 Identities=20% Similarity=0.358 Sum_probs=223.0
Q ss_pred CceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCC---CEEEEEECCCcEEEEECCCCce----EEEeeCCCC
Q 000681 1021 SFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFS---PIVVAADENERIKIWNYEEDTL----LNSFDNHDF 1084 (1354)
Q Consensus 1021 ~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg---~~Latgs~Dg~I~IWd~~tg~~----l~~~~~h~~ 1084 (1354)
+..++++..|+.+++||.+.. .+|.+++|.--. ..+++++.|.++++|.++.++. +....+|.
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk- 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK- 193 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc-
Confidence 357889999999999999865 678878875433 3699999999999999987743 34455898
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC-C-----------------cceEEeeeecccCCCCCcccceeE
Q 000681 1085 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-D-----------------KQKLVTAFSSIQGHKPGVRCSNVV 1146 (1354)
Q Consensus 1085 ~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~-~-----------------~~~lvs~~~~l~~h~~~V~si~~~ 1146 (1354)
..|.++.. ..++..+++|+.|.+|+||+..... . .....++.-.+.||..+|.+
T Consensus 194 --~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~---- 265 (423)
T KOG0313|consen 194 --RSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS---- 265 (423)
T ss_pred --cceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee----
Confidence 89999998 6899999999999999999932210 0 00111234567899999998
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1226 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~ 1226 (1354)
+.|++ ...+++++.|.+|++||++++. ++.++.+. ..++++ ...+..+++++|+.|..|++||.|++...+...
T Consensus 266 V~w~d-~~v~yS~SwDHTIk~WDletg~-~~~~~~~~--ksl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~- 339 (423)
T KOG0313|consen 266 VVWSD-ATVIYSVSWDHTIKVWDLETGG-LKSTLTTN--KSLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ- 339 (423)
T ss_pred EEEcC-CCceEeecccceEEEEEeeccc-ceeeeecC--cceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEE-
Confidence 88986 8899999999999999999999 88887764 348999 566789999999999999999999876333333
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1227 ~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.+.+|+++|.++.|+|. +...|++|+.|+++++||+|+.+.++..+.+|...|.++.|. ++..|++|+.|++|+|+.
T Consensus 340 s~~gH~nwVssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eeecchhhhhheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 66789999999999998 788999999999999999999877999999999999999998 456999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=222.30 Aligned_cols=277 Identities=19% Similarity=0.336 Sum_probs=227.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
.+++.++|+.+|++|.+++.|.++.||--.+|+.+.++.+|. +.|.++.. +.+...++||+.|.++++||+.+
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~t-- 83 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT---GAVWCCDI--DWDSKHLITGSADQTAKLWDVET-- 83 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC---ceEEEEEe--cCCcceeeeccccceeEEEEcCC--
Confidence 689999999999999999999999999998999999999999 99999998 56899999999999999999987
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-----CCeEEEEECC-------CCceeeeeecCCCCCCeE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLE-------KEQQMVNPIPSSSDCSIS 1189 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-----Dg~I~VWDl~-------t~~~~v~~i~~~~~~~Vt 1189 (1354)
|++... -.....|+. +.|+.++++++++.+ .+.|.++|++ .+. +...++.+.+. ++
T Consensus 84 Gk~la~------~k~~~~Vk~----~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~sk-it 151 (327)
T KOG0643|consen 84 GKQLAT------WKTNSPVKR----VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSK-IT 151 (327)
T ss_pred CcEEEE------eecCCeeEE----EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccc-ee
Confidence 544322 123455666 899988888888754 4679999998 344 67778877655 78
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000681 1190 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1190 sl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~ 1269 (1354)
.+ .|.+-+..+++|..||.|..||.+++...+... ..|...|+.+.++++ ..++++||.|.+-++||.++. +.
T Consensus 152 ~a-~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d--~T~FiT~s~Dttakl~D~~tl-~v 224 (327)
T KOG0643|consen 152 SA-LWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRD--RTYFITGSKDTTAKLVDVRTL-EV 224 (327)
T ss_pred ee-eecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCC--cceEEecccCccceeeeccce-ee
Confidence 77 788999999999999999999999998666644 356689999999999 999999999999999999998 68
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC---C------------CceEEEEeccCCccccccCCCeEEEEE
Q 000681 1270 YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL---E------------GEQLGTIRYHHPSFMAQKIGSVNCLTF 1334 (1354)
Q Consensus 1270 v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~---~------------g~~l~~i~~~h~~fl~~~~~~V~sLaf 1334 (1354)
++++.. ..+|++.+++|....++.|+.-..--|=.. . .+.+..+++ |-++|++++|
T Consensus 225 ~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--------HFGPINsvAf 295 (327)
T KOG0643|consen 225 LKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--------HFGPINSVAF 295 (327)
T ss_pred EEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--------cccCcceeEE
Confidence 888874 678999999998887776653221112111 1 123444444 5699999999
Q ss_pred ecCCCEEEEEECCCeEEEc
Q 000681 1335 HPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1335 spdg~~Lasgs~Dg~V~IW 1353 (1354)
||+|+..++|+.||.|++.
T Consensus 296 hPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred CCCCcccccCCCCceEEEE
Confidence 9999999999999999984
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-25 Score=229.50 Aligned_cols=276 Identities=18% Similarity=0.307 Sum_probs=232.7
Q ss_pred CCeEEEEEcC---CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fsp---dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
.+|-.++|+| +|-+|++++.||.-.+-+-++|.-+.+|.+|. +.|.+... +.+...-++++.|-+-+|||.-
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk---gavw~~~l--~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK---GAVWSATL--NKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC---cceeeeec--Cchhhhhhhhcccchhhhhhhh
Confidence 6788999976 77799999999999999999999999999999 89999888 4666778889999999999987
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
+ +... . --.|...|.. ++|+++..+|++||.++.+||||+++.+.+...+.+|.++ |..+.++. ..
T Consensus 90 t--gdel-h-----sf~hkhivk~----~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc~-eD 155 (334)
T KOG0278|consen 90 T--GDEL-H-----SFEHKHIVKA----VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWCH-ED 155 (334)
T ss_pred h--hhhh-h-----hhhhhheeee----EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEec-cC
Confidence 6 3221 1 1346666777 9999999999999999999999999887677888888887 88885554 56
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
+.|++.+.|++||+||.|++. .++.+.. +..|+++.++++ |++|.++ ..+.|++||..+. .+++.++. ..
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt-~v~sL~~----~s~VtSlEvs~d--G~ilTia-~gssV~Fwdaksf-~~lKs~k~-P~ 225 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGT-EVQSLEF----NSPVTSLEVSQD--GRILTIA-YGSSVKFWDAKSF-GLLKSYKM-PC 225 (334)
T ss_pred ceEEeeccCCceEEEEeccCc-EEEEEec----CCCCcceeeccC--CCEEEEe-cCceeEEeccccc-cceeeccC-cc
Confidence 678888999999999999998 4555422 278999999998 7776655 5578999999988 57777764 34
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEE-eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTI-RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1279 ~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i-~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.|.+.+.+|+..++++|+.|..++.|| .+|+.+..+ ++ | .++|.|+.|+|+|...|+|+.||+|++|.
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-h-------~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-H-------FGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-C-------CCceEEEEECCCCceeeccCCCceEEEEE
Confidence 689999999999999999999999999 678888775 55 4 48999999999999999999999999993
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=213.65 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=228.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1105 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---------------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~t 1105 (1354)
...|.+++|+|.|.+.++|+...+.+|-.+..- ...+.-+-|. +.|.+.+| ++.|.+|++
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk---gsiyc~~w--s~~geliat 106 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK---GSIYCTAW--SPCGELIAT 106 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---ccEEEEEe--cCccCeEEe
Confidence 357999999999999999999999998755321 0112223455 89999999 799999999
Q ss_pred EeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EE-CCCeEEEEECCCCceeeeeecCC
Q 000681 1106 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SG-EVSSIMLWDLEKEQQMVNPIPSS 1183 (1354)
Q Consensus 1106 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g-~Dg~I~VWDl~t~~~~v~~i~~~ 1183 (1354)
|+.|++|++...... .....-.--.+.-|.+.|+.+++. .=...++.+++ +| .|..|++-|..+++ ....+.+|
T Consensus 107 gsndk~ik~l~fn~d--t~~~~g~dle~nmhdgtirdl~fl-d~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sgh 182 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNAD--TCNATGHDLEFNMHDGTIRDLAFL-DDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGH 182 (350)
T ss_pred cCCCceEEEEecccc--cccccCcceeeeecCCceeeeEEe-cCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCC
Confidence 999999999876542 111111111256688889984331 21223444444 44 67778888999999 89999999
Q ss_pred CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC-CCC---CCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000681 1184 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP-HTQ---QVERVVGISFQPGLDPAKIVSASQAGDIQ 1259 (1354)
Q Consensus 1184 ~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~-~~~---h~~~I~sv~fsp~~~g~~Lasgs~DG~I~ 1259 (1354)
.+. |.++-. -+|.+|++|+.|.+||+||+|-+. .+..... +.+ ..+.|.++++.|. |+.|++|-.|....
T Consensus 183 tgh-ilalys--wn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps--grll~sg~~dssc~ 256 (350)
T KOG0641|consen 183 TGH-ILALYS--WNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS--GRLLASGHADSSCM 256 (350)
T ss_pred ccc-EEEEEE--ecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC--cceeeeccCCCceE
Confidence 887 888844 478999999999999999999877 3443322 111 2367999999999 99999999999999
Q ss_pred EEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000681 1260 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1260 IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
+||++.+ ..++.+..|...|.|+.|+|...++.+++.|..|++-|+.|.....+.. -..+.|...+..+.|||..-
T Consensus 257 lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~---~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 257 LYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI---MVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred EEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce---EEEEeccCceEEEEecCccc
Confidence 9999998 7999999999999999999999999999999999999998865443321 11223557888999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000681 1340 LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1340 ~Lasgs~Dg~V~IWd 1354 (1354)
.+++.+.|.++.+|.
T Consensus 333 sfisssadkt~tlwa 347 (350)
T KOG0641|consen 333 SFISSSADKTATLWA 347 (350)
T ss_pred eeeeccCcceEEEec
Confidence 999999999999994
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=242.36 Aligned_cols=276 Identities=21% Similarity=0.368 Sum_probs=227.3
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg-~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
++|.|++=+|.. ..+++|+.||.|+|||+.+.++..+|+.|. +-|..|++. ...++++|+|.+|+.|.+..
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~----~~~~~tvgdDKtvK~wk~~~- 138 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVT----QTSFFTVGDDKTVKQWKIDG- 138 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEec----ccceEEecCCcceeeeeccC-
Confidence 789999999987 689999999999999999999999999999 999999993 38889999999999999844
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
. .. +++.+ ...+.+ ++-+..+..++++|. .|-|||..... ++..+....+. |.++.+.+....+
T Consensus 139 --~--p~---~tilg-~s~~~g----Idh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dt-i~svkfNpvETsI 202 (433)
T KOG0268|consen 139 --P--PL---HTILG-KSVYLG----IDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADS-ISSVKFNPVETSI 202 (433)
T ss_pred --C--cc---eeeec-cccccc----cccccccccccccCc--eeeecccccCC-ccceeecCCCc-eeEEecCCCcchh
Confidence 1 11 22222 122233 444444566666665 49999999999 99999988887 9999666666678
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
|+++..|++|.+||+|....+.++... ..-+.|+|+|. +..|++|+.|..++.||++....++..+.+|...|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeee-----ccccceecCcc--ccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 888889999999999998855554433 45678999998 99999999999999999999888999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+++|+|.|+-+++||.|.+|+||..+...-..+ + |. .+...|.|+.|+.|.+++++|++|+.|++|.
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-Y-ht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-Y-HT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhh-h-hH----hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 9999999999999999999999999654332222 2 33 2456799999999999999999999999994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=222.48 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=208.2
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
.+..+..+. +.|..+.| +-+|+|.++++.|.+||+|+... ..++ +++.+|...|.. ++-+.++.
T Consensus 9 r~~~l~~~q---gaV~avry--N~dGnY~ltcGsdrtvrLWNp~r----g~li---ktYsghG~EVlD----~~~s~Dns 72 (307)
T KOG0316|consen 9 RLSILDCAQ---GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLR----GALI---KTYSGHGHEVLD----AALSSDNS 72 (307)
T ss_pred hceeecccc---cceEEEEE--ccCCCEEEEcCCCceEEeecccc----ccee---eeecCCCceeee----cccccccc
Confidence 455667777 89999999 78999999999999999999854 2333 678999999988 66667899
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC-eeeEeecCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVE 1233 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~-~~~~~~~~~~~h~~ 1233 (1354)
.++++|.|+.|.+||+.+++ .++.+.+|... |+.+ .+..+...+++|+.|.++++||-|+.. .+++++.. ...
T Consensus 73 kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~aq-VNtV-~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D 146 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGK-VDRRFRGHLAQ-VNTV-RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKD 146 (307)
T ss_pred ccccCCCCceEEEEEcccCe-eeeecccccce-eeEE-EecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcC
Confidence 99999999999999999999 99999998776 9999 777888999999999999999999764 24444433 348
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEE
Q 000681 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLG 1312 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~ 1312 (1354)
.|.++.+. +..|++|+.||+++.||+|.+ .....+- ..+|+++.|+++++....++.|+++++.| .+|+.+.
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 89999986 559999999999999999998 3444444 45899999999999999999999999999 6799999
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1313 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1313 ~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..++ |.+ ...-...+++.....+++|+.||.|.+||
T Consensus 220 sYkG-hkn-----~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 220 SYKG-HKN-----MEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred Hhcc-ccc-----ceeeeeeeecccceeEEeccCCceEEEEE
Confidence 9999 763 34456677888889999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=270.30 Aligned_cols=266 Identities=16% Similarity=0.238 Sum_probs=205.0
Q ss_pred CCcEEEEECCCCceEEE-----eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc-eEEeeeecccC
Q 000681 1062 NERIKIWNYEEDTLLNS-----FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQG 1135 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~-----~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~-~lvs~~~~l~~ 1135 (1354)
+|.+++|+..+.+.... +..|. +.|++++| ++++.+|++|+.||.|+||+........ ........+.+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSS---NLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCC---CcEEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence 34455555544333222 23355 78999999 6899999999999999999975311000 00000011222
Q ss_pred CCCCcccceeEEEEecC-CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000681 1136 HKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1214 (1354)
Q Consensus 1136 h~~~V~si~~~v~~sp~-~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwD 1214 (1354)
...+.+ ++|++. +..+++++.||+|++||+.+++ .+..+.+|... |+++.+.+.++.+|++|+.||.|++||
T Consensus 532 -~~~v~~----l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 532 -RSKLSG----ICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred -cCceee----EEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 234555 888875 6778888999999999999988 88888887765 999955556889999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEE
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1215 lr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Las 1294 (1354)
++++.. ...+.. ...|.++.|++. ++.+|++|+.||.|++||+++.+.++..+.+|...|+++.|. ++.+|++
T Consensus 605 ~~~~~~-~~~~~~----~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGVS-IGTIKT----KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCcE-EEEEec----CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 998773 333322 257999999764 489999999999999999998755678888999999999997 6789999
Q ss_pred EeCCCcEEEEeCC-------CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1295 GSAKQLIKVFSLE-------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1295 gs~Dg~I~Iwd~~-------g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
++.|++|+|||+. +..+..+.+ |. ..+.+++|++++.+||+|+.||.|+||+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~-------~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMG-HT-------NVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcC-CC-------CCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999999964 245666766 54 7789999999999999999999999995
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=229.30 Aligned_cols=290 Identities=14% Similarity=0.252 Sum_probs=233.3
Q ss_pred CCcEEEEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000681 1030 NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1109 (1354)
Q Consensus 1030 d~~I~iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D 1109 (1354)
|+.+.-++-. ...|.+++.+|+.++++||+.|..-.+|+..+|.....+.+|+ ..|+++.| +.+|.+|+||+-+
T Consensus 54 DdS~~tF~~H-~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK---DSVt~~~F--shdgtlLATGdms 127 (399)
T KOG0296|consen 54 DDSLVTFDKH-TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK---DSVTCCSF--SHDGTLLATGDMS 127 (399)
T ss_pred ccceeehhhc-CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC---CceEEEEE--ccCceEEEecCCC
Confidence 3334444433 3789999999999999999999999999999999999999999 99999999 7899999999999
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1189 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vt 1189 (1354)
|.|+||+..+ +..+.. +. ..+..+.. +.|+|.+..|++|+.||.|.+|.+.++. ..+.+.+|... ++
T Consensus 128 G~v~v~~~st--g~~~~~-----~~---~e~~dieW-l~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~-ct 194 (399)
T KOG0296|consen 128 GKVLVFKVST--GGEQWK-----LD---QEVEDIEW-LKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSP-CT 194 (399)
T ss_pred ccEEEEEccc--CceEEE-----ee---cccCceEE-EEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCC-cc
Confidence 9999999977 322221 21 22233222 8999999999999999999999999987 78888887655 77
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000681 1190 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1190 sl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~ 1269 (1354)
+= .+.|+|+.+++|..||+|++||..++++..+.-... .....++.++.. +..++.|+.++.+++-+..++ +.
T Consensus 195 ~G-~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~~--~~~~~~g~~e~~~~~~~~~sg-KV 267 (399)
T KOG0296|consen 195 CG-EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNLA--GSTLTKGNSEGVACGVNNGSG-KV 267 (399)
T ss_pred cc-cccCCCceEEEEecCceEEEEecCCCceeEEecccc---cCcCCccccccc--cceeEeccCCccEEEEccccc-eE
Confidence 77 566789999999999999999999998554433221 356778888887 889999999999999988877 35
Q ss_pred EEEEe--------cCCCC---eEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000681 1270 YLTID--------AHRGS---LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338 (1354)
Q Consensus 1270 v~~l~--------~h~~~---VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg 1338 (1354)
+.... .+... |-.+.++..-++.|+|+.||+|.|||+....++.+-. |+ ..|+.+.|-+ .
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he-------~~V~~l~w~~-t 338 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HE-------DGVTKLKWLN-T 338 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CC-------CceEEEEEcC-c
Confidence 54444 23333 4444555566789999999999999988777777766 65 7799999998 7
Q ss_pred CEEEEEECCCeEEEcC
Q 000681 1339 VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1339 ~~Lasgs~Dg~V~IWd 1354 (1354)
.+|++++.||.|+.||
T Consensus 339 ~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWD 354 (399)
T ss_pred chheeeccCceEEeee
Confidence 8999999999999997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=243.17 Aligned_cols=271 Identities=17% Similarity=0.277 Sum_probs=224.5
Q ss_pred hheeecCC-CCceEEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEe
Q 000681 1012 IAKCQRSC-NSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1079 (1354)
Q Consensus 1012 i~~~q~~~-~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~ 1079 (1354)
+...++.+ -+..+++++.|+.|++|+.... .+|.+++|+++|..+++++.|+.|++||+++|+.+.+|
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence 44445554 3345778899999999998763 78999999999999999999999999999999999999
Q ss_pred eCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1080 DNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~s~d~-~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
.... .++++.|. +++ +.+++|+.|+.|+-||+++ ++ ++ +.+..|.+.|.. +.|-+++..+++
T Consensus 297 ~~~~----~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs--~k--vv---qeYd~hLg~i~~----i~F~~~g~rFis 359 (503)
T KOG0282|consen 297 HLDK----VPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRS--GK--VV---QEYDRHLGAILD----ITFVDEGRRFIS 359 (503)
T ss_pred ecCC----CceeeecC--CCCCcEEEEecCCCcEEEEeccc--hH--HH---HHHHhhhhheee----eEEccCCceEee
Confidence 8766 78899994 555 8999999999999999977 32 33 567788888888 888899999999
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC--CCeE
Q 000681 1159 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV--ERVV 1236 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~--~~I~ 1236 (1354)
+++|++++||+.+.+. .++.+.....-..-++ ...|+++.+++-+.|..|.+|.+...-.. ...+.+.||. +.-.
T Consensus 360 sSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~-~~~P~~~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPV-PIKNIADPEMHTMPCL-TLHPNGKWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVAGYSC 436 (503)
T ss_pred eccCccEEEEEcCCCc-cchhhcchhhccCcce-ecCCCCCeehhhccCceEEEEeccccccc-CHhhhhcceeccCcee
Confidence 9999999999999887 6655544333335666 56789999999999999999997654322 2222445553 4566
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd 1305 (1354)
.+.|+|+ |.+|++|+.||.+.+||.++. ..+..+++|.+.+..+.|||... .+||++.||.|++|+
T Consensus 437 ~v~fSpD--G~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSPD--GRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcCC--CCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 8899999 999999999999999999998 69999999999999999999866 899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=235.90 Aligned_cols=274 Identities=16% Similarity=0.217 Sum_probs=225.8
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC-------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~ 1077 (1354)
++-.++++++|..|+++..|.+..+|..... .+|.-+.||||+++|++++.+..+.+||+.+|....
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 3667899999999999999999999987654 678999999999999999999999999999999888
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEE
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1157 (1354)
Q Consensus 1078 ~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Ll 1157 (1354)
.+.... +..+.+.+| -+||..+++|+.|++|..||+.. .+..+|+.... ..|.+ ++..++|.+++
T Consensus 306 ~y~~~~--~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDg-----n~~~~W~gvr~--~~v~d----lait~Dgk~vl 370 (519)
T KOG0293|consen 306 LYPSGL--GFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDG-----NILGNWEGVRD--PKVHD----LAITYDGKYVL 370 (519)
T ss_pred hcccCc--CCCcceeEE--ccCCceeEecCCCCcEEEecCCc-----chhhccccccc--ceeEE----EEEcCCCcEEE
Confidence 876542 368899999 58999999999999999999854 22334443332 45666 78888999999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000681 1158 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1158 a~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~s 1237 (1354)
+.+.|..|++++.++.. .+..+..+ .+|+++ ..+.+++++++.-.+..|++||+.... +++.+.+++. ..-|..
T Consensus 371 ~v~~d~~i~l~~~e~~~-dr~lise~--~~its~-~iS~d~k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq-~~fiIr 444 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARV-DRGLISEE--QPITSF-SISKDGKLALVNLQDQEIHLWDLEENK-LVRKYFGHKQ-GHFIIR 444 (519)
T ss_pred EEecccceeeechhhhh-hhcccccc--CceeEE-EEcCCCcEEEEEcccCeeEEeecchhh-HHHHhhcccc-cceEEE
Confidence 99999999999998876 55555553 349999 788999999999999999999999655 5554444321 223445
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 000681 1238 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1238 v~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~ 1307 (1354)
-+|--. +..++++||+|+.|+||+..++ .++.++.+|...|+|++|+|..+ ++|++|.||+|+||...
T Consensus 445 SCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 445 SCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eccCCC-CcceEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 555444 4589999999999999999998 69999999999999999999766 89999999999999744
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=243.66 Aligned_cols=278 Identities=15% Similarity=0.256 Sum_probs=236.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|.+++|+.+...+++|+ .+.|+||+.++.++++++... -+.+..|+ +.+.++++|...|.+.+||+..
T Consensus 374 ~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS-- 443 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFV--PGDRYIVLGTKNGELQVFDLAS-- 443 (888)
T ss_pred hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEec--CCCceEEEeccCCceEEEEeeh--
Confidence 5689999999988888877 789999999999999998764 47788885 6899999999999999999966
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCce----eeeeecCC------CCCCeEEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ----MVNPIPSS------SDCSISAL 1191 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~----~v~~i~~~------~~~~Vtsl 1191 (1354)
..++ .++..|.+.+++ ++.+|++..+++||.|.+|++||..-... ..+.+..+ -...|.|+
T Consensus 444 --~~l~---Eti~AHdgaIWs----i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v 514 (888)
T KOG0306|consen 444 --ASLV---ETIRAHDGAIWS----ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV 514 (888)
T ss_pred --hhhh---hhhhccccceee----eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence 2222 446789999999 88889999999999999999999752110 11111111 12348999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEE
Q 000681 1192 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1192 ~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~ 1271 (1354)
..+|+|++++++--|.+|++|-+.+-+-.+ .+-||.-+|.|+.++|+ +..++|||.|..|++|-++-| .+-+
T Consensus 515 -~~Spdgk~LaVsLLdnTVkVyflDtlKFfl----sLYGHkLPV~smDIS~D--SklivTgSADKnVKiWGLdFG-DCHK 586 (888)
T KOG0306|consen 515 -SVSPDGKLLAVSLLDNTVKVYFLDTLKFFL----SLYGHKLPVLSMDISPD--SKLIVTGSADKNVKIWGLDFG-DCHK 586 (888)
T ss_pred -EEcCCCcEEEEEeccCeEEEEEecceeeee----eecccccceeEEeccCC--cCeEEeccCCCceEEeccccc-hhhh
Confidence 789999999999999999999999877434 34488899999999999 999999999999999999988 7999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeE
Q 000681 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1272 ~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V 1350 (1354)
.+-+|.+.|.++.|-|....+.++|.|+.|+-|| -.-+.+..+.+ |. ..|+|++.+|+|.++++++.|.+|
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-H~-------~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-HH-------SEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-ch-------heeeeeEEcCCCCeEEeccCCcee
Confidence 9999999999999999999999999999999999 45567777777 43 789999999999999999999999
Q ss_pred EEcC
Q 000681 1351 SIHS 1354 (1354)
Q Consensus 1351 ~IWd 1354 (1354)
++|.
T Consensus 659 RlwE 662 (888)
T KOG0306|consen 659 RLWE 662 (888)
T ss_pred Eeee
Confidence 9994
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=238.80 Aligned_cols=277 Identities=18% Similarity=0.335 Sum_probs=227.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~--~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
..+..+.|-++...|++|+.|..|++|++..++ .+.++.+.. +.|+++.| ..++..+++++.|+.+++|++..
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL---GNITSIDF--DSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC---CCcceeee--cCCCceEEeecCCCceeeeeccc
Confidence 457889999999999999999999999998665 666777776 89999999 78999999999999999999955
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
.++. .++.+|...|++ +.|......+++|+.|.+|+.||+.+.. |.+++-.... +..| ... +.
T Consensus 251 ----~r~~---~TLsGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S~--cnDI-~~~--~~ 313 (459)
T KOG0288|consen 251 ----LRLR---HTLSGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGSQ--CNDI-VCS--IS 313 (459)
T ss_pred ----hhhh---hhhcccccceee----ehhhccccceeeccccchhhhhhhhhhh-eecccccccc--ccce-Eec--ce
Confidence 2222 568899999998 6676666668889999999999999988 8887765322 5556 332 56
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC---
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--- 1276 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h--- 1276 (1354)
.+++|-.|++||+||+|+.. ........ +.|+++..+++ +..+.+.+.|.++.+.|+++. +....+.+.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g----g~vtSl~ls~~--g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k 385 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSAD-KTRSVPLG----GRVTSLDLSMD--GLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFK 385 (459)
T ss_pred eeeecccccceEEEeccCCc-eeeEeecC----cceeeEeeccC--CeEEeeecCCCceeeeecccc-cEEEEeeccccc
Confidence 78999999999999999988 44444222 68999999999 999999999999999999987 566666642
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1277 -RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1277 -~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
....+.+.|||++.|+|+||.||.|+||++ +|+....++..+. ...|++++|+|.|..|++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s------~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS------NAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCC------CcceEEEEEcCCCchhhcccCCcceEecC
Confidence 234889999999999999999999999995 4555555555222 23699999999999999999999999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-22 Score=216.68 Aligned_cols=281 Identities=16% Similarity=0.263 Sum_probs=233.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC--CCeEEEEEc
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIRIWKD 1117 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~--DG~IrIWdl 1117 (1354)
++..|+++.|+.+|.+|++++.|.++++||..+++.++++..++ ..|..++|. .....++.++. |.+||.-++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Ft--h~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFT--HHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEe--cCCceEEEccCCCCCceEEEEe
Confidence 55789999999999999999999999999999999999999887 789999995 45555665555 889999999
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~ 1197 (1354)
.+ . +.+ +.+.||...|.+ ++.+|.+..+++++.|++|++||++..+ |...+.... ..+++++|.
T Consensus 88 ~d--N--kyl---RYF~GH~~~V~s----L~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~----~pi~AfDp~ 151 (311)
T KOG1446|consen 88 HD--N--KYL---RYFPGHKKRVNS----LSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSG----RPIAAFDPE 151 (311)
T ss_pred ec--C--ceE---EEcCCCCceEEE----EEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCC----CcceeECCC
Confidence 76 2 223 679999999999 8888999999999999999999999887 776665532 334467899
Q ss_pred CCEEEEEECCCeEEEEECCCC-CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTP-DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1276 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~-~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h 1276 (1354)
|-++|++...+.|++||+|.- +.+...+....+.....+.+.|+|+ |++++.++..+.+++.|.-.| ....++..+
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~ 228 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDG-TVKSTFSGY 228 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCC-cEeeeEeec
Confidence 999999999889999999964 3345555333344578999999999 999999999999999999988 688888877
Q ss_pred CCCe---EEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1277 RGSL---SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1277 ~~~V---tsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
...- -+.+|.||++++.+|+.||+|.+|+ -+|..+..+++ . +.+++.++.|+|.-.++++++ ..+.+
T Consensus 229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~------~~~~~~~~~fnP~~~mf~sa~--s~l~f 299 (311)
T KOG1446|consen 229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-P------NGGPVSCVRFNPRYAMFVSAS--SNLVF 299 (311)
T ss_pred cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-C------CCCCccccccCCceeeeeecC--ceEEE
Confidence 5432 5778999999999999999999999 56888888776 2 358899999999988888875 55666
Q ss_pred c
Q 000681 1353 H 1353 (1354)
Q Consensus 1353 W 1353 (1354)
|
T Consensus 300 w 300 (311)
T KOG1446|consen 300 W 300 (311)
T ss_pred E
Confidence 6
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=215.54 Aligned_cols=276 Identities=17% Similarity=0.262 Sum_probs=227.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~--~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
.++.+++|+-+|..|++|+.|+++.||+++..+.... ..+|. +.|-.++|. .+...++++++.|.+|++||+..
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---~svdql~w~-~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---DSVDQLCWD-PKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---cchhhheeC-CCCCcceEEecCCceEEEEEecc
Confidence 5688999999999999999999999999997755544 34566 788899995 46888999999999999999977
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
++.... .......+ .+.|+|+++++++++.|..|...|.++.+ .+...+-. ..+..+ .+..+++
T Consensus 97 --~k~~~~-----i~~~~eni-----~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~--~e~ne~-~w~~~nd 160 (313)
T KOG1407|consen 97 --GKCTAR-----IETKGENI-----NITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFK--FEVNEI-SWNNSND 160 (313)
T ss_pred --CcEEEE-----eeccCcce-----EEEEcCCCCEEEEecCcccEEEEEecccc-eeehhccc--ceeeee-eecCCCC
Confidence 332221 11111122 38999999999999999999999999888 66555442 236777 4447788
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1279 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~ 1279 (1354)
+|+...+.|.|.|.....-+ .+. ....|.....||.|+|+ |++|++|+.|..+.+||+... .+++.+.-+.-+
T Consensus 161 ~Fflt~GlG~v~ILsypsLk-pv~---si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~EL-iC~R~isRldwp 233 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLK-PVQ---SIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDEL-ICERCISRLDWP 233 (313)
T ss_pred EEEEecCCceEEEEeccccc-ccc---ccccCCcceEEEEECCC--CceEeeccccceeeccChhHh-hhheeeccccCc
Confidence 88888889999999887655 333 44567799999999999 999999999999999999987 789999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC---------Ce
Q 000681 1280 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD---------AC 1349 (1354)
Q Consensus 1280 VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D---------g~ 1349 (1354)
|..+.|+.+|++||+||.|..|-|=+ -+|..+..+.. .++-..++|||...+||-+++| |+
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~ 304 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTFTVAWHPKRPLLAYACDDKDGDSNREAGT 304 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCceeEEecCCCceeeEEecCCCCccccccce
Confidence 99999999999999999999999988 57999998875 3788999999999999988774 56
Q ss_pred EEEc
Q 000681 1350 VSIH 1353 (1354)
Q Consensus 1350 V~IW 1353 (1354)
|++|
T Consensus 305 vKiF 308 (313)
T KOG1407|consen 305 VKIF 308 (313)
T ss_pred eEEe
Confidence 7776
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=234.42 Aligned_cols=290 Identities=17% Similarity=0.269 Sum_probs=222.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-~~l~~~~~h~~~-~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
..|+++++.|.|..|++|+.|..|++||...- .....|+.-.+. ...|+++.| +..+..|++.+.....+|+|-..
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCeEEEEecCcceeEEccCC
Confidence 56899999999999999999999999998743 112223221111 246999999 67999999999899999998632
Q ss_pred CCCcceEEe---------eeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecC----CCC
Q 000681 1120 QKDKQKLVT---------AFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS----SSD 1185 (1354)
Q Consensus 1120 ~~~~~~lvs---------~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~~----~~~ 1185 (1354)
.++.. ....-+||...++| .+|+|... .+++++.||++|+||+...+.....|+. ...
T Consensus 246 ----~~~~e~~KGDQYI~Dm~nTKGHia~lt~----g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 246 ----FEIVEFSKGDQYIRDMYNTKGHIAELTC----GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred ----ceeeeeeccchhhhhhhccCCceeeeec----cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 12221 12234678888888 89999754 5778899999999999876534444432 233
Q ss_pred CCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000681 1186 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1186 ~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~--~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
.+++++ .|+++|+.|++|+.||+|.+||.+... ....+.....|.. .|+||.|+++ |++|++-+.|+++++||+
T Consensus 318 v~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~d--g~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 318 VPVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYD--GNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred cCceee-ecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccc--cchhhhccCCCceeeeec
Confidence 346776 789999999999999999999986543 1111112234555 8999999999 999999999999999999
Q ss_pred CCCCccEEEEecC--CCCeEEEEEcCCCCEEEEEeC------CCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEE
Q 000681 1264 RNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGSA------KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTF 1334 (1354)
Q Consensus 1264 ~~~~~~v~~l~~h--~~~VtsLafspdg~~Lasgs~------Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLaf 1334 (1354)
+..++++.+..+- .-+-+.++|||+.++|++|+. .|.+.+|| .+-+.+..+.. . ...|..+.|
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~-------~aSvv~~~W 465 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-S-------TASVVRCLW 465 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-C-------CceEEEEee
Confidence 9988888777653 235678999999999999964 57899999 56666777665 2 367999999
Q ss_pred ecCCCEEEEEECCCeEEEc
Q 000681 1335 HPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1335 spdg~~Lasgs~Dg~V~IW 1353 (1354)
||.-+.+.+|+.||+++||
T Consensus 466 hpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 466 HPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cchhhheeeecCCCceEEE
Confidence 9999999999999999987
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=250.22 Aligned_cols=296 Identities=18% Similarity=0.259 Sum_probs=239.6
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCC------------CceEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000681 1035 CWDTRFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEE------------DTLLNSFDNHDFPDKGISKLCLVNELDV 1100 (1354)
Q Consensus 1035 iWd~~~~~~I~sL~fspdg~~Latgs--~Dg~I~IWd~~t------------g~~l~~~~~h~~~~~~ItsL~f~~s~d~ 1100 (1354)
-|....+..|.++..||+|..++||+ .||.++||+.+. .+.+.+...|. +.|+|+.| ++||
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---~sv~CVR~--S~dG 81 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---GSVNCVRF--SPDG 81 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---CceeEEEE--CCCC
Confidence 37777778899999999999999999 899999998652 24556677788 99999999 7999
Q ss_pred CEEEEEeCCCeEEEEEccC--------CCCcce---EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1101 SLLLVASCNGNIRIWKDYD--------QKDKQK---LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1101 ~~L~tgs~DG~IrIWdl~~--------~~~~~~---lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
.+|++|++|+.|.||+... ..+... -.++...+.+|...|.. ++|+|++.++++++.|++|.|||
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D----v~Wsp~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD----VNWSPDDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce----eccCCCccEEEEecccceEEEEc
Confidence 9999999999999999762 011122 22334567899999998 99999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC---CCCCCeEEEEEecCCCC
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---QQVERVVGISFQPGLDP 1246 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~---~h~~~I~sv~fsp~~~g 1246 (1354)
..+.+ ++..+.+|.+- |..+ .++|-|++|++-+.|++|++|++..-. +.+.+...- .-...+..+.|+|+ |
T Consensus 158 ~~tF~-~~~vl~~H~s~-VKGv-s~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD--G 231 (942)
T KOG0973|consen 158 AKTFE-LLKVLRGHQSL-VKGV-SWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD--G 231 (942)
T ss_pred cccce-eeeeeeccccc-ccce-EECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC--c
Confidence 99998 99999999877 9999 788999999999999999999977644 333332221 22356889999999 9
Q ss_pred CEEEEEEC----CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEe
Q 000681 1247 AKIVSASQ----AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----AP------------IIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1247 ~~Lasgs~----DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspd-----g~------------~Lasgs~Dg~I~Iwd 1305 (1354)
.+|+++.. -..+.|.+-.+. ..-..+-+|.+++.++.|+|. .. ++|+||.|++|.||.
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred CeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 99998753 235888887766 567788999999999999982 11 788999999999999
Q ss_pred C-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1306 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1306 ~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
. ..+++..+ |+-| ...|.+++|+|||..|.+++.||+|.+.
T Consensus 311 T~~~RPl~vi---~~lf----~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 311 TALPRPLFVI---HNLF----NKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred cCCCCchhhh---hhhh----cCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 4 34454444 2211 3679999999999999999999999875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.98 Aligned_cols=290 Identities=21% Similarity=0.344 Sum_probs=237.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEc-----
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD----- 1117 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl----- 1117 (1354)
+|..++-....+.+.+++.|.+.+||.+++|.++.++.+|. +.|++++| .+.+.++++++.|++-.||..
T Consensus 150 GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 150 GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT---GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred ceeeehhhcCCcceeecccccceeEEeeccccceeeecccc---cceeeEEe--ccccceEEEccCCcchHHHHHhhcCc
Confidence 44445555556688999999999999999999999999999 99999999 568999999999999999983
Q ss_pred -cC--------CC-------------------CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1118 -YD--------QK-------------------DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1118 -~~--------~~-------------------~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
.. ++ ....+-.+.-.+.+|...|.+ .+|-..+..+++++.|.+-.+||
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a----~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA----CDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe----hhhhcCcceeeeeeccccceeee
Confidence 10 00 001222344556778777776 78888899999999999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
++++. .+..+.+|... .+.+ .-.|..+++++.+.|.+.++||.|..-..+. .+.||...|+++.|..+ ..+
T Consensus 301 VEtge-~v~~LtGHd~E-LtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~---VFQGHtdtVTS~vF~~d---d~v 371 (481)
T KOG0300|consen 301 VETGE-VVNILTGHDSE-LTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA---VFQGHTDTVTSVVFNTD---DRV 371 (481)
T ss_pred eccCc-eeccccCcchh-cccc-ccCCcceEEEEeccCceeEeccchhhcceee---eecccccceeEEEEecC---Cce
Confidence 99999 99999988665 7777 5567889999999999999999994432333 56688899999999875 789
Q ss_pred EEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCe
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1250 asgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
++|+.|.+|++||+++.+.++.+++. ..+++.++++..+++||.--.+..|++||++|..+..+.- .. ..+|...|
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr-ts--RqgHrRMV 447 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR-TS--RQGHRRMV 447 (481)
T ss_pred eecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc-cc--ccccceee
Confidence 99999999999999999889999984 5789999999999999999999999999999998877652 11 22355789
Q ss_pred EEEEEecCC--CEEEEEECCCeEEEcC
Q 000681 1330 NCLTFHPYQ--VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1330 ~sLafspdg--~~Lasgs~Dg~V~IWd 1354 (1354)
+|.+|..+. .-|.+++-|..+.=|+
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeccccCcccccccccccceeeeeE
Confidence 999997554 5688899999988774
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=223.51 Aligned_cols=280 Identities=17% Similarity=0.298 Sum_probs=236.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
.+|+++...+..+.+++|+.|..+.++|...++.+..++||. ..|+++.| .++...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc---eEEEEEEe--ccchhheeecCCcceEEeecccccc
Confidence 578889988888899999999999999999999999999999 89999999 6899999999999999999986632
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEEcCCCCE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~-~~~~Vtsl~~~s~~g~~ 1200 (1354)
. . .....|..+|+. +.-++.+.+++++++||+....|++++. ++...... .+..+++. .++|||.+
T Consensus 295 ~--~-----~~~~~h~~~V~~----ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~-~fHpDgLi 361 (506)
T KOG0289|consen 295 E--P-----TSSRPHEEPVTG----LSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSA-AFHPDGLI 361 (506)
T ss_pred C--c-----ccccccccccee----eeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEe-eEcCCceE
Confidence 2 2 225678899988 8889999999999999999999999998 66555542 44457888 78899999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC-CCC
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGS 1279 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-~~~ 1279 (1354)
|.+|..||.|+|||+.++.. +. .+.+|.++|..++|+.+ |.+|++++.|+.|++||+|.. ..+.++... ...
T Consensus 362 fgtgt~d~~vkiwdlks~~~-~a---~Fpght~~vk~i~FsEN--GY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTN-VA---KFPGHTGPVKAISFSEN--GYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKE 434 (506)
T ss_pred EeccCCCceEEEEEcCCccc-cc---cCCCCCCceeEEEeccC--ceEEEEEecCCeEEEEEehhh-cccceeecccccc
Confidence 99999999999999998873 33 45678899999999998 999999999999999999987 466666643 347
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCC---ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1280 LSALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1280 VtsLafspdg~~Lasgs~Dg~I~Iwd~~g---~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.++.|.+.|.+|+.++.|=+|++++... ..+..+.. +.+..+++.|..+.+++++++.|..+++|.
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~--------~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD--------HSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh--------cccccceeeecccceEEeeccchhheEEee
Confidence 99999999999999998877777776332 33333433 447889999999999999999999999873
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=214.37 Aligned_cols=268 Identities=19% Similarity=0.343 Sum_probs=216.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|++|.|+|.+..|++++.||.+++|+.........++ |. .++.+.+| .+...+++|+.||.|+.+|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~---~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~-- 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG---APLLDCAF---ADESTIVTGGLDGQVRRYDLNT-- 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC---Cceeeeec---cCCceEEEeccCceEEEEEecC--
Confidence 689999999999999999999999999999776555554 34 58999999 4688999999999999999977
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
+.... +..|...+++ +.+.+..+.+++||.|++|++||.+... .+..+.... .|.++ +..|+.|
T Consensus 85 ~~~~~------igth~~~i~c----i~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~~k--kVy~~---~v~g~~L 148 (323)
T KOG1036|consen 85 GNEDQ------IGTHDEGIRC----IEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQGK--KVYCM---DVSGNRL 148 (323)
T ss_pred Cccee------eccCCCceEE----EEeeccCCeEEEcccCccEEEEeccccc-cccccccCc--eEEEE---eccCCEE
Confidence 33222 5679999998 8888899999999999999999999866 555555432 48887 3468999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC---ccEEEEecCCC
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRG 1278 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~---~~v~~l~~h~~ 1278 (1354)
++|+.|..|.+||+|+.....+.. ...-+-.+.++++-|+ +.-++++|-||.|.+=.++... ..-..|+.|..
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~r--eS~lkyqtR~v~~~pn--~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRR--ESSLKYQTRCVALVPN--GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred EEeecCceEEEEEcccccchhhhc--cccceeEEEEEEEecC--CCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 999999999999999877444222 1223467999999998 7888999999998876655431 23456777742
Q ss_pred ---------CeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000681 1279 ---------SLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1279 ---------~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
+|++++|||-...||||+.||.|.+||. +.+.+..+.. . ...|.+++|+.+|..||+++.
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~-------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-Y-------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-C-------CCceEEEEeccCCCeEEEEec
Confidence 7999999999899999999999999994 4566666644 3 267999999999999999975
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=244.86 Aligned_cols=270 Identities=21% Similarity=0.360 Sum_probs=226.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~-~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
..+.+..|+ +.++++++.+.+|++|+..++..+.. +.+|. +.|.++++ ...+.+|++|+.|.+++|||..+
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~s- 280 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCST- 280 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC---CCceeEEE--ecCCCEEEEEecCCcEEeEecCC-
Confidence 457778888 66899999999999999999998888 99999 99999999 34689999999999999999766
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
+... ..+.+|...+.+ +.. ....+++|+.|.+|++||+.++. ++..+.+|... |.++ .. ++.+
T Consensus 281 -g~C~-----~~l~gh~stv~~----~~~--~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~-V~~v-~~--~~~~ 343 (537)
T KOG0274|consen 281 -GECT-----HSLQGHTSSVRC----LTI--DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGP-VNCV-QL--DEPL 343 (537)
T ss_pred -CcEE-----EEecCCCceEEE----EEc--cCceEeeccCCceEEEEeccCcc-eEEEecccccc-EEEE-Ee--cCCE
Confidence 5444 348899988877 332 35566777899999999999999 99999986555 9999 33 4899
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+++|+.||+|++||.++++ .+. .+.+|..+|+++.+... ..+++|+.|++|++||+++...++.++.+|..-+
T Consensus 344 lvsgs~d~~v~VW~~~~~~-cl~---sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTGK-CLK---SLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred EEEEecCceEEEEEhhhce-eee---eecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 9999999999999999777 444 45578899999987642 7999999999999999998745999999999888
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.++.+ .+++|++++.|++|++|| .+++.+..+.. + +.+.|+.+++. ...+++++.||.+++||
T Consensus 417 ~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-~------~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 417 SSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-R------HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccccc--ccceeEeccccccEEEeecccCceeeeecc-C------CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 66655 568999999999999999 66888888876 2 23678888776 56788888999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=236.43 Aligned_cols=270 Identities=19% Similarity=0.247 Sum_probs=195.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceE-------------EEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCC
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------NSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCN 1109 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l-------------~~~~~h~~~~~~ItsL~f~~s~-d~~~L~tgs~D 1109 (1354)
|+....++++..+++++.+.....|+...+..+ ..+.+|. +.|++++| ++ ++.+|++|+.|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~---~~V~~v~f--sP~d~~~LaSgS~D 97 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE---GPIIDVAF--NPFDPQKLFTASED 97 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC---CCEEEEEE--cCCCCCEEEEEeCC
Confidence 444455566555566655555556654433221 2366787 89999999 56 78899999999
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1188 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~-~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~V 1188 (1354)
|+|+|||+.+.............+.+|...|.+ ++|+|.+ +.|++++.|++|+|||+++++ .+..+..|... |
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~----l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~-V 171 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI----VSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQ-I 171 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEE----EEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCc-e
Confidence 999999996521111111223457899998888 9999986 578888999999999999998 88888887765 9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC-CeEEEEEecCCCCCEEEEEE----CCCcEEEEeC
Q 000681 1189 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE-RVVGISFQPGLDPAKIVSAS----QAGDIQFLDI 1263 (1354)
Q Consensus 1189 tsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~-~I~sv~fsp~~~g~~Lasgs----~DG~I~IWDl 1263 (1354)
.++ .++++|++|++|+.||.|++||+++++. ...+. +|.+ .+..+.|.++ +..+++++ .|+.|++||+
T Consensus 172 ~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~~-v~tl~---~H~~~~~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 172 TSL-EWNLDGSLLCTTSKDKKLNIIDPRDGTI-VSSVE---AHASAKSQRCLWAKR--KDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred EEE-EEECCCCEEEEecCCCEEEEEECCCCcE-EEEEe---cCCCCcceEEEEcCC--CCeEEEEecCCCCCCeEEEEeC
Confidence 999 6778999999999999999999999873 44332 3434 3456788887 66666554 4789999999
Q ss_pred CCCCccEEEEecCC-CCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCC
Q 000681 1264 RNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGS-AKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338 (1354)
Q Consensus 1264 ~~~~~~v~~l~~h~-~~VtsLafspdg~~Lasgs-~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg 1338 (1354)
++...++.....+. ..+....|++++.+|++|+ .|+.|++||+. ++.+..... . ...++..++|.|..
T Consensus 245 r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~------s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 245 RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-S------SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-c------CCCCCcceEecccc
Confidence 98755666555443 4566677899999998887 59999999965 554444433 1 23456777777754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=235.05 Aligned_cols=255 Identities=16% Similarity=0.285 Sum_probs=219.5
Q ss_pred eeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC-CCCCCCCeEEEEEE
Q 000681 1027 SKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLV 1095 (1354)
Q Consensus 1027 s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~-h~~~~~~ItsL~f~ 1095 (1354)
-++...+.+|+...+ ..|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |. ..|.+++|
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~---~rvg~laW- 268 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA---SRVGSLAW- 268 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC---ceeEEEec-
Confidence 345557888888765 6799999999999999999999999999999999999998 77 89999999
Q ss_pred eeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCce
Q 000681 1096 NELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1175 (1354)
Q Consensus 1096 ~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~ 1175 (1354)
++..+.+|+.||.|.++|+...+.. + +.+.+|...|.. +.|++++.++++||.|+.+.|||.....
T Consensus 269 ---~~~~lssGsr~~~I~~~dvR~~~~~---~---~~~~~H~qeVCg----Lkws~d~~~lASGgnDN~~~Iwd~~~~~- 334 (484)
T KOG0305|consen 269 ---NSSVLSSGSRDGKILNHDVRISQHV---V---STLQGHRQEVCG----LKWSPDGNQLASGGNDNVVFIWDGLSPE- 334 (484)
T ss_pred ---cCceEEEecCCCcEEEEEEecchhh---h---hhhhcccceeee----eEECCCCCeeccCCCccceEeccCCCcc-
Confidence 5889999999999999999763222 1 237889999988 9999999999999999999999997777
Q ss_pred eeeeecCCCCCCeEEEEEEcCCCCEEEEEE--CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000681 1176 MVNPIPSSSDCSISALTASQVHGGQLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1176 ~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs--~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
....+..|... |.++++++-....||+|+ .|+.|++||..+++.+.... + ...|.++.|++. .+.|+++.
T Consensus 335 p~~~~~~H~aA-VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t----gsQVcsL~Wsk~--~kEi~sth 406 (484)
T KOG0305|consen 335 PKFTFTEHTAA-VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T----GSQVCSLIWSKK--YKELLSTH 406 (484)
T ss_pred ccEEEecccee-eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c----CCceeeEEEcCC--CCEEEEec
Confidence 78888888776 999988777888999875 59999999999988443322 2 378999999999 66666543
Q ss_pred --CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1254 --QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1254 --~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
.++.|.||+..+. ..+..+.+|...|..++++|||..+++|+.|.++++|++-+
T Consensus 407 G~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM-KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCCcEEEEecccc-ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 5678999999987 68999999999999999999999999999999999999544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=215.24 Aligned_cols=243 Identities=19% Similarity=0.281 Sum_probs=205.3
Q ss_pred CCeEEEEEcCC-CCEEEEEECCCcEEEEECCC-CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPF-SPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspd-g~~Latgs~Dg~I~IWd~~t-g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
.++..++|++. ++.+++++.||++++||... ...+..++.|. ..|.++.| +..++..+++++-||+|++|+...
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~---~EV~Svdw-n~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK---REVYSVDW-NTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh---hheEEecc-ccccceeEEeeccCCceEeecCCC
Confidence 78999999985 45888899999999999643 46888899999 89999999 356778889999999999999844
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L-la~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
..-+ +++.+|...|.. ..|+|....+ ++++.|+.+++||++... ....+..|... |.++.+...+.
T Consensus 137 ----~~Sv---~Tf~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~E-il~cdw~ky~~ 203 (311)
T KOG0277|consen 137 ----PNSV---QTFNGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSE-ILCCDWSKYNH 203 (311)
T ss_pred ----Ccce---EeecCCccEEEE----EecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccce-eEeecccccCC
Confidence 2222 558899988888 8999976555 555899999999998765 45558888744 99998888889
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
+.+++|+.|+.||+||+|+-+..+. .+.+|.-.|..++|+|. ....|++++.|-+++|||...+...+.+..-|..
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~---eL~gh~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE 279 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLF---ELNGHGLAVRKVKFSPH-HASLLASASYDMTVRIWDPERQDSAIETVDHHTE 279 (311)
T ss_pred cEEEecCCCceEEEEehhhccccce---eecCCceEEEEEecCcc-hhhHhhhccccceEEecccccchhhhhhhhccce
Confidence 9999999999999999998775544 34578899999999998 7889999999999999999876678888888999
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 000681 1279 SLSALAVHRHA-PIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1279 ~VtsLafspdg-~~Lasgs~Dg~I~Iwd 1305 (1354)
-+..+.|++.. .++|+++.|+.++||+
T Consensus 280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EEeccccccccCceeeecccccceeeec
Confidence 99999999864 4999999999999998
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=232.81 Aligned_cols=274 Identities=17% Similarity=0.275 Sum_probs=222.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCc
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1123 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~ 1123 (1354)
..-+.|+ ..+.|++|. ...|++|+..+++.......+. ..|+++.| +++|.+|++|..+|.|.|||..+.+..
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~---~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGE---ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKT 252 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCC---CceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccc
Confidence 3456677 445777776 6689999999998776666655 79999999 789999999999999999998652221
Q ss_pred ceEEeeeecccC-CCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEE
Q 000681 1124 QKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1202 (1354)
Q Consensus 1124 ~~lvs~~~~l~~-h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~ 1202 (1354)
+.+.+ |...|-+ ++|+ +..+.+|+.||.|..+|++..+..+..+.+|... |..+ .+++++++++
T Consensus 253 -------~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe-VCgL-kws~d~~~lA 317 (484)
T KOG0305|consen 253 -------RTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE-VCGL-KWSPDGNQLA 317 (484)
T ss_pred -------ccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce-eeee-EECCCCCeec
Confidence 34566 8888877 8997 6778888899999999999887233336666655 9999 7889999999
Q ss_pred EEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1203 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1203 sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs--~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+|+.|+.+.|||......... ..+|.+.|..++|+|. ....||+|+ .|+.|++||..++ ..+..+.. ...|
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~----~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt-gsQV 390 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFT----FTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT-GSQV 390 (484)
T ss_pred cCCCccceEeccCCCccccEE----EeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCC-cEeccccc-CCce
Confidence 999999999999976663433 2367799999999999 678899876 6899999999988 57766654 5679
Q ss_pred EEEEEcCCCCEEEEE--eCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASG--SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasg--s~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+|.|++..+-|+++ ..++.|.||+. +-+.+..+.+ |. ..|..++++|||..+++|+.|.++++|+
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~-------~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HT-------SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-Cc-------ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999998766654 45778999994 4566666776 65 7899999999999999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-22 Score=240.60 Aligned_cols=252 Identities=17% Similarity=0.320 Sum_probs=200.3
Q ss_pred EEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC----------------------------CC----
Q 000681 1076 LNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ----------------------------KD---- 1122 (1354)
Q Consensus 1076 l~~~~-~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~----------------------------~~---- 1122 (1354)
.+.+. .|. +.|.++.| ++||+|||+||.||.||||.+... ..
T Consensus 259 ~Qe~~~ah~---gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 259 VQEISNAHK---GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeccccccC---CcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 34455 777 99999999 899999999999999999998550 00
Q ss_pred -c-----------ce---------EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000681 1123 -K-----------QK---------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1181 (1354)
Q Consensus 1123 -~-----------~~---------lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~ 1181 (1354)
. .. .-++++.+.||...|.+ +.|+ .+++|++++.|++||+|++.+.. |++.|.
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILD----lSWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL~~F~ 407 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILD----LSWS-KNNFLLSSSMDKTVRLWHPGRKE-CLKVFS 407 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhhee----cccc-cCCeeEeccccccEEeecCCCcc-eeeEEe
Confidence 0 00 00234567788888888 8998 57899999999999999999999 999886
Q ss_pred CCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000681 1182 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1261 (1354)
Q Consensus 1182 ~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IW 1261 (1354)
|.+- ||||++.+.|.++|++|+-||.||||++...+ ++ .+.... .-|++++|.|+ |+..+.|+.+|.+++|
T Consensus 408 -Hndf-VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv-~W~Dl~---~lITAvcy~Pd--Gk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 408 -HNDF-VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VV-DWNDLR---DLITAVCYSPD--GKGAVIGTFNGYCRFY 478 (712)
T ss_pred -cCCe-eEEEEecccCCCcEeecccccceEEeecCcCe-eE-eehhhh---hhheeEEeccC--CceEEEEEeccEEEEE
Confidence 4444 99998888899999999999999999998776 33 232332 78999999999 9999999999999999
Q ss_pred eCCCCCccEEEEec--C------CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEE
Q 000681 1262 DIRNHKDAYLTIDA--H------RGSLSALAVHRHAP-IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNC 1331 (1354)
Q Consensus 1262 Dl~~~~~~v~~l~~--h------~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~s 1331 (1354)
+.... .....+.. | ...|+++.|.|... .+++.+.|..|+|||. +...+..+++ +.+ .+.-..
T Consensus 479 ~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-~~n-----~~SQ~~ 551 (712)
T KOG0283|consen 479 DTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-FRN-----TSSQIS 551 (712)
T ss_pred EccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-ccc-----CCccee
Confidence 99876 34443332 1 23799999998655 4666788999999995 5566777777 331 244567
Q ss_pred EEEecCCCEEEEEECCCeEEEcC
Q 000681 1332 LTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1332 Lafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..|+.||+++++++.|..|+||+
T Consensus 552 Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred eeEccCCCEEEEeecCceEEEEe
Confidence 78999999999999999999995
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-21 Score=234.55 Aligned_cols=256 Identities=17% Similarity=0.250 Sum_probs=192.4
Q ss_pred EECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeEEEEEccCCCCc-ceEEeeeecccCC
Q 000681 1059 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDK-QKLVTAFSSIQGH 1136 (1354)
Q Consensus 1059 gs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d-~~~L~tgs~DG~IrIWdl~~~~~~-~~lvs~~~~l~~h 1136 (1354)
|+.++.|++|+......+..+.+|. +.|.+++| +++ +.+|++|+.||+|+|||+.+.... ..+......+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~---~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT---SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC---CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567899999998888888999999 89999999 554 789999999999999999652111 1111122346789
Q ss_pred CCCcccceeEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000681 1137 KPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215 (1354)
Q Consensus 1137 ~~~V~si~~~v~~sp~~~~L-la~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDl 1215 (1354)
...|.+ ++|+|++..+ ++++.||+|++||+++++ .+..+. +. ..|.++ .++++|.+|++++.|+.|++||+
T Consensus 125 ~~~V~s----Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~-~~V~Sl-swspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISI----IDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MP-KKLSSL-KWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEE----EEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cC-CcEEEE-EECCCCCEEEEEecCCEEEEEEC
Confidence 988888 9999988776 567899999999999988 666665 33 349999 77899999999999999999999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEE-----EEecCCCCCEEEEEECCC----cEEEEeCCCCCccEEEEec--CCCCeEEEE
Q 000681 1216 RTPDMLVCSTRPHTQQVERVVGI-----SFQPGLDPAKIVSASQAG----DIQFLDIRNHKDAYLTIDA--HRGSLSALA 1284 (1354)
Q Consensus 1216 r~~~~~~~~~~~~~~h~~~I~sv-----~fsp~~~g~~Lasgs~DG----~I~IWDl~~~~~~v~~l~~--h~~~VtsLa 1284 (1354)
++++ ....+. +|.+.+.+. .|+++ +.+|++++.|+ +|+|||+++...++..+.. +.+.+....
T Consensus 197 Rsg~-~i~tl~---gH~g~~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 197 RKQE-IASSFH---IHDGGKNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred CCCc-EEEEEe---cccCCceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 9987 344443 455554332 34466 78888888774 7999999965457766543 233444444
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000681 1285 VHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1285 fspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
..++|.++++|+.|+.|++|++....+..+.. +. +..++.+++|.|...
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-----s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-----SCSPFRSFGFLPKQI 319 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-----cCCCccceEEccccc
Confidence 46668899999999999999976555555443 22 347788899999763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=230.05 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=226.4
Q ss_pred eEEEeeCCCcEEEEeCCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEE
Q 000681 1023 DLAVSKLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1094 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f 1094 (1354)
.++.++..+.+++|+.++. .-+.+..|-|.++++++|...|.+.+||+.+...+.+.++|. +.|.+++.
T Consensus 386 ~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---gaIWsi~~ 462 (888)
T KOG0306|consen 386 ILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD---GAIWSISL 462 (888)
T ss_pred eeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc---cceeeeee
Confidence 4556667789999999976 456678899999999999999999999999999999999999 99999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEEccCCC---CcceEEeee--ecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1095 VNELDVSLLLVASCNGNIRIWKDYDQK---DKQKLVTAF--SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1095 ~~s~d~~~L~tgs~DG~IrIWdl~~~~---~~~~lvs~~--~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
.+|+..++|||.|.+|++||..... +...-+-.. ...-.....| +++.++|++.+|+++--|.+|+||-
T Consensus 463 --~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv----L~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 463 --SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV----LCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred --cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE----EEEEEcCCCcEEEEEeccCeEEEEE
Confidence 6899999999999999999984311 111100000 0001122333 4499999999999999999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
+.+-+ ....+.+|.-. |.|| -.+++++.+++|+.|..|++|-+.-+. +.+. +-+|...|.++.|.|. ...+
T Consensus 537 lDtlK-FflsLYGHkLP-V~sm-DIS~DSklivTgSADKnVKiWGLdFGD-CHKS---~fAHdDSvm~V~F~P~--~~~F 607 (888)
T KOG0306|consen 537 LDTLK-FFLSLYGHKLP-VLSM-DISPDSKLIVTGSADKNVKIWGLDFGD-CHKS---FFAHDDSVMSVQFLPK--THLF 607 (888)
T ss_pred eccee-eeeeecccccc-eeEE-eccCCcCeEEeccCCCceEEeccccch-hhhh---hhcccCceeEEEEccc--ceeE
Confidence 99988 77888888665 9999 778999999999999999999999888 3332 2367799999999998 8999
Q ss_pred EEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1310 (1354)
Q Consensus 1250 asgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~ 1310 (1354)
.+++.||.|+-||-.+. +.+.++.+|...|+|++.+|+|.+++++|.|.+|++|..+.+.
T Consensus 608 Ft~gKD~kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred EEecCcceEEeechhhh-hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 99999999999999988 7999999999999999999999999999999999999965443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=213.39 Aligned_cols=260 Identities=18% Similarity=0.273 Sum_probs=215.9
Q ss_pred CCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCC
Q 000681 1019 CNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG 1088 (1354)
Q Consensus 1019 ~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ 1088 (1354)
+++|-|+++..|+.-.+-+-+++ ..|.+..++.+-...|+++.|-+-+|||.-+|..+.+|.- . .-
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-k---hi 102 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-K---HI 102 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-h---he
Confidence 45666777666665444444443 5678888888888889999999999999999999988863 3 47
Q ss_pred eEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEE
Q 000681 1089 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168 (1354)
Q Consensus 1089 ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VW 1168 (1354)
|.+++| +.|.++|+||+.++.+||||+...+... ..+.+|...|+. +.|...+..++++.+|++||+|
T Consensus 103 vk~~af--~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~----v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 103 VKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRT----VLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred eeeEEe--cccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCccee----EEEeccCceEEeeccCCceEEE
Confidence 899999 7899999999999999999997644333 346899999998 8888889999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000681 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1169 Dl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~ 1248 (1354)
|.++++ .++++... ..|+++ -.+.+|+++.++ ..++|.+||..+-. +++.++.. ..|.+..++|+ ...
T Consensus 171 D~rTgt-~v~sL~~~--s~VtSl-Evs~dG~ilTia-~gssV~Fwdaksf~-~lKs~k~P----~nV~SASL~P~--k~~ 238 (334)
T KOG0278|consen 171 DHRTGT-EVQSLEFN--SPVTSL-EVSQDGRILTIA-YGSSVKFWDAKSFG-LLKSYKMP----CNVESASLHPK--KEF 238 (334)
T ss_pred EeccCc-EEEEEecC--CCCcce-eeccCCCEEEEe-cCceeEEecccccc-ceeeccCc----cccccccccCC--Cce
Confidence 999999 89988864 348999 667788776655 45789999999877 55554332 67999999999 799
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l-~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+++|+.|+.++.||..++ +.+..+ ++|.++|.|+.|+|+|...|+||.||+|+||.+.
T Consensus 239 fVaGged~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEecCcceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999 566665 8999999999999999999999999999999954
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-21 Score=227.06 Aligned_cols=318 Identities=15% Similarity=0.240 Sum_probs=251.1
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceEEEee
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l~~~~ 1080 (1354)
|..++.++-...++++-.+|+|.++|.+.+ ++|++++|.-||. ++++|+..|.+.+||++..+.+....
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 555666666667888999999999999987 7899999999997 67778888999999999888877776
Q ss_pred -CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEee-----------------------------e
Q 000681 1081 -NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA-----------------------------F 1130 (1354)
Q Consensus 1081 -~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~-----------------------------~ 1130 (1354)
.|. +.|+...|. +....+++++.|..+++|=..+.++..++... +
T Consensus 285 nah~---~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 285 NAHY---GSVTGATFL--PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred cccc---CCcccceec--CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 676 788899995 57889999999999888855422221111100 0
Q ss_pred ec-----------------------------------------------------ccCCCCC------------------
Q 000681 1131 SS-----------------------------------------------------IQGHKPG------------------ 1139 (1354)
Q Consensus 1131 ~~-----------------------------------------------------l~~h~~~------------------ 1139 (1354)
+. +..|.+.
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 00 0000000
Q ss_pred -------cccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee---cCCCCCCeEEEEEEcCCCCEEEEEECCCe
Q 000681 1140 -------VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI---PSSSDCSISALTASQVHGGQLAAGFVDGS 1209 (1354)
Q Consensus 1140 -------V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i---~~~~~~~Vtsl~~~s~~g~~L~sgs~DGs 1209 (1354)
....+.+++.++.|+..+.|...|.|-+|++.++. ....+ +.|.. +|+++ +...-++.+++++.+|-
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~~~~ah~~-~V~gl-a~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFGDSPAHKG-EVTGL-AVDGTNRLLVSAGADGI 516 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-eecccccCccccC-ceeEE-EecCCCceEEEccCcce
Confidence 00112346667778888888899999999999998 67777 35544 59999 56667889999999999
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCC
Q 000681 1210 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289 (1354)
Q Consensus 1210 VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg 1289 (1354)
+++||..... +...++. ...+.++..+.. ...++.+..|-.|+++|..+. ..++.+.+|.+.|++++|||||
T Consensus 517 lkfw~f~~k~-l~~~l~l----~~~~~~iv~hr~--s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 517 LKFWDFKKKV-LKKSLRL----GSSITGIVYHRV--SDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred EEEEecCCcc-eeeeecc----CCCcceeeeeeh--hhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCC
Confidence 9999998776 4444422 267889999988 889999999999999999987 6899999999999999999999
Q ss_pred CEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC-CeEEEcC
Q 000681 1290 PIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-ACVSIHS 1354 (1354)
Q Consensus 1290 ~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D-g~V~IWd 1354 (1354)
++|++++.|++|++|| .++..+..+.. ..+.+++.|+|+|.+|||...| .-|++|.
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~~v---------d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGLLV---------DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeEec---------CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999 67888887765 2689999999999999999998 6799984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=204.99 Aligned_cols=277 Identities=14% Similarity=0.228 Sum_probs=220.6
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
+.+.....++..|.++..|....+|-..++ ..|.|+...-+.+++++|+.|.++++||+++|+.+..++.
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~ 92 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT 92 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec
Confidence 455666777778889999999999998665 6799999999999999999999999999999999999987
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCC-----CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeE
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCN-----GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~D-----G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
.. .|..+.| +.+|++++...++ +.|.++|+........-..++..+..+...++. +-|.+-+..|
T Consensus 93 ~~----~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~----a~Wg~l~~~i 162 (327)
T KOG0643|consen 93 NS----PVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS----ALWGPLGETI 162 (327)
T ss_pred CC----eeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee----eeecccCCEE
Confidence 66 8999999 6788888887654 679999997532111111222345556666666 8999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1236 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~ 1236 (1354)
++|.+||.|.+||++++...+.....|.. .|+.| .++++..+|++|+.|.+-++||.++-+ +.+.+... .+|+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~-~Ind~-q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te----~PvN 235 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSS-KINDL-QFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE----RPVN 235 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhcc-ccccc-cccCCcceEEecccCccceeeecccee-eEEEeeec----cccc
Confidence 99999999999999998735666666666 49999 788999999999999999999999887 66666444 7899
Q ss_pred EEEEecCCCCCEEEEEE-CCC-cEEEEeCCCCC-----------ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000681 1237 GISFQPGLDPAKIVSAS-QAG-DIQFLDIRNHK-----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs-~DG-~I~IWDl~~~~-----------~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
+.+++|. .+.++.|+ .+- .|.-=+.+.++ +.+..+++|-++|++++|||+|+..++|+.||.|++
T Consensus 236 ~aaisP~--~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 236 TAAISPL--LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ceecccc--cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 9999998 55555544 331 12222222221 567788899999999999999999999999999999
Q ss_pred EeCC
Q 000681 1304 FSLE 1307 (1354)
Q Consensus 1304 wd~~ 1307 (1354)
..++
T Consensus 314 h~Fd 317 (327)
T KOG0643|consen 314 HHFD 317 (327)
T ss_pred EEec
Confidence 8654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=206.38 Aligned_cols=269 Identities=13% Similarity=0.270 Sum_probs=211.8
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CceEE-EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fsp-dg~~Latgs~Dg~I~IWd~~t-g~~l~-~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
+.|.+|+||| .+.++++|+.||+||+|+++. |..+. ....|. ++|.+++| +.||..+++|+.|+.+++||+.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEE--ccCCceEEeeccCCceEEEEcc
Confidence 7899999999 555777999999999999986 33333 344566 89999999 7899999999999999999997
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~--~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
+ +... .+..|..+|.. +.|-+... .|++|+.|++|+.||.+... .+.++.... .+.++..
T Consensus 103 S--~Q~~------~v~~Hd~pvkt----~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPe--RvYa~Dv--- 164 (347)
T KOG0647|consen 103 S--GQVS------QVAAHDAPVKT----CHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPE--RVYAADV--- 164 (347)
T ss_pred C--CCee------eeeecccceeE----EEEecCCCcceeEecccccceeecccCCCC-eeeeeeccc--eeeehhc---
Confidence 7 3322 25779999998 77766655 68889999999999999988 888777643 3677633
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEec
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDA 1275 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~ 1275 (1354)
...+++++..+..|.+|+++++....+..+.. -+-.+++|+...+ ....+.|+.+|.+-|..+..+. ..-.+|+.
T Consensus 165 ~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d--~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 165 LYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQD--KDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEec--CCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 35689999999999999998776444433221 2367899999998 6777999999999999988641 23456777
Q ss_pred CCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1276 HRG---------SLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1276 h~~---------~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
|.. .|++++|||.-..|+|.+.||+..+||.+. ..+.+... | ..+|+|.+|+.+|.++|-+.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~-------~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-H-------PQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-C-------CCccceeEecCCCCEEEEEe
Confidence 762 578999999989999999999999999553 34444444 4 38999999999999887654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=234.80 Aligned_cols=259 Identities=19% Similarity=0.342 Sum_probs=217.9
Q ss_pred ceEEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeE
Q 000681 1022 FDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS 1090 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~It 1090 (1354)
..+.++..+..|++||..++ ++|.+++|..-+.+|++|+.|.+++|||..+|++...+.+|. +.|.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~---stv~ 295 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT---SSVR 295 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC---ceEE
Confidence 45667777789999999876 789999999888899999999999999999999999999999 8888
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEEC
Q 000681 1091 KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170 (1354)
Q Consensus 1091 sL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl 1170 (1354)
++.. .+.++++|+.|.+|++|++.+ +... +.+.+|...|++ +..+ +..+++|+.||+|+|||+
T Consensus 296 ~~~~----~~~~~~sgs~D~tVkVW~v~n--~~~l-----~l~~~h~~~V~~----v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 296 CLTI----DPFLLVSGSRDNTVKVWDVTN--GACL-----NLLRGHTGPVNC----VQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEEc----cCceEeeccCCceEEEEeccC--cceE-----EEeccccccEEE----EEec--CCEEEEEecCceEEEEEh
Confidence 8877 678889999999999999965 3222 346779999998 5554 889999999999999999
Q ss_pred CCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE
Q 000681 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1250 (1354)
Q Consensus 1171 ~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~La 1250 (1354)
.+.+ +++++.+|... |+++ .+... +.+++|+.|++|++||+++...... .+.+|..-+..+.+. ++.|+
T Consensus 359 ~~~~-cl~sl~gH~~~-V~sl-~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~----~~~Lv 427 (537)
T KOG0274|consen 359 RTGK-CLKSLSGHTGR-VYSL-IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLR----DNFLV 427 (537)
T ss_pred hhce-eeeeecCCcce-EEEE-EecCc-ceEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccc----cceeE
Confidence 9999 99999998777 9999 55333 8999999999999999999832444 455666777666654 67999
Q ss_pred EEECCCcEEEEeCCCCCccEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEE
Q 000681 1251 SASQAGDIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1314 (1354)
Q Consensus 1251 sgs~DG~I~IWDl~~~~~~v~~l~~-h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i 1314 (1354)
+++.||+|++||..++ +++.++.+ |.+.|+.+++. ...+++++.||.+++||+. +.....+
T Consensus 428 s~~aD~~Ik~WD~~~~-~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEG-ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eccccccEEEeecccC-ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999998 79999998 67889888886 4688899999999999954 5544443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=235.24 Aligned_cols=243 Identities=21% Similarity=0.360 Sum_probs=193.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--------------------------------C-------------
Q 000681 1039 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE--------------------------------D------------- 1073 (1354)
Q Consensus 1039 ~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t--------------------------------g------------- 1073 (1354)
...+.|.+++|++||+|||+|+.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 3447899999999999999999999999997654 0
Q ss_pred ---------------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCC
Q 000681 1074 ---------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1138 (1354)
Q Consensus 1074 ---------------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1138 (1354)
+.++.|.+|. +.|.+|.| ...++|++++.|.+||+|++.. .+.. + .-.|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt---~DILDlSW---SKn~fLLSSSMDKTVRLWh~~~----~~CL---~-~F~Hnd 410 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT---ADILDLSW---SKNNFLLSSSMDKTVRLWHPGR----KECL---K-VFSHND 410 (712)
T ss_pred CccccCCCccccccccchhhhhccc---hhheeccc---ccCCeeEeccccccEEeecCCC----ccee---e-EEecCC
Confidence 1233456777 88999999 4778999999999999999954 2222 2 235889
Q ss_pred CcccceeEEEEecC-CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000681 1139 GVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217 (1354)
Q Consensus 1139 ~V~si~~~v~~sp~-~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~ 1217 (1354)
-|+| ++|+|. ++++++|+-||.||||++...+ +..+..-.+- |+++ ++.|+|+..++|+.+|.+++|+.+.
T Consensus 411 fVTc----VaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~l-ITAv-cy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 411 FVTC----VAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDL-ITAV-CYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred eeEE----EEecccCCCcEeecccccceEEeecCcCe--eEeehhhhhh-heeE-EeccCCceEEEEEeccEEEEEEccC
Confidence 9998 999995 6778888899999999999877 4455444444 9999 7889999999999999999999987
Q ss_pred CCeeeEeecCC------CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC--CeEEEEEcCCC
Q 000681 1218 PDMLVCSTRPH------TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG--SLSALAVHRHA 1289 (1354)
Q Consensus 1218 ~~~~~~~~~~~------~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~--~VtsLafspdg 1289 (1354)
.+ ....+... ..|. .|+.+.|.|. ....+++.+.|..|||||.+.. .++..++++.. .-....|+.||
T Consensus 483 lk-~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 483 LK-LVSDFHIRLHNKKKKQGK-RITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred Ce-EEEeeeEeeccCccccCc-eeeeeEecCC-CCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeEccCC
Confidence 66 33322111 1133 8999999998 5567888899999999999876 68888886532 33567899999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000681 1290 PIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1290 ~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
++|++++.|..|+||+.+
T Consensus 559 k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWKND 576 (712)
T ss_pred CEEEEeecCceEEEEeCC
Confidence 999999999999999963
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=219.88 Aligned_cols=291 Identities=16% Similarity=0.241 Sum_probs=225.1
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC---------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceE
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE---------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL 1076 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l 1076 (1354)
+......+.|-.+++++.|..|++||+..- ..|++++|++.|..|++.+.....+|+|-+..+.+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 445566677788999999999999999853 77999999999999888888999999998754443
Q ss_pred EEe------------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccce
Q 000681 1077 NSF------------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSN 1144 (1354)
Q Consensus 1077 ~~~------------~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~ 1144 (1354)
... ++|. ..+++.+|.+ .+...++|++.||++||||+...+...+++.. +...+..-.+..
T Consensus 250 e~~KGDQYI~Dm~nTKGHi---a~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~-k~~~g~Rv~~ts-- 322 (641)
T KOG0772|consen 250 EFSKGDQYIRDMYNTKGHI---AELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT-KPAGGKRVPVTS-- 322 (641)
T ss_pred eeeccchhhhhhhccCCce---eeeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEee-ccCCCcccCcee--
Confidence 333 4566 7889999963 56778999999999999999875544444311 222233333444
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeee-cCCCC-CCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCee
Q 000681 1145 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPI-PSSSD-CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1221 (1354)
Q Consensus 1145 ~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~-~v~~i-~~~~~-~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~ 1221 (1354)
++|++++..|++|+.||.|.+||...... ....+ .+|.. ..|+|| .|+.+|++|++-+.|+++++||+|..+..
T Consensus 323 --C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi-~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 323 --CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI-SFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred --eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE-EeccccchhhhccCCCceeeeeccccccc
Confidence 89999999999999999999999765430 22222 23433 259999 88999999999999999999999988777
Q ss_pred eEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000681 1222 VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1222 ~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~------DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg 1295 (1354)
+..+..+. ....-+.++|+|+ .++|++|+. .|.+.+||..+. +.+..+......|..+.|||.-+.|..|
T Consensus 400 L~~~tgL~-t~~~~tdc~FSPd--~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 400 LNVRTGLP-TPFPGTDCCFSPD--DKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred hhhhcCCC-ccCCCCccccCCC--ceEEEecccccCCCCCceEEEEeccce-eeEEEecCCCceEEEEeecchhhheeee
Confidence 66654432 2356788999999 999999874 478999999888 6888888778889999999999999999
Q ss_pred eCCCcEEEEe-----CCCceEEEEec
Q 000681 1296 SAKQLIKVFS-----LEGEQLGTIRY 1316 (1354)
Q Consensus 1296 s~Dg~I~Iwd-----~~g~~l~~i~~ 1316 (1354)
+.||.++||= ..|..+...+.
T Consensus 476 sgdG~~~vyYdp~~S~RGak~cv~k~ 501 (641)
T KOG0772|consen 476 SGDGTAHVYYDPNESIRGAKLCVVKP 501 (641)
T ss_pred cCCCceEEEECccccccchhheeecC
Confidence 9999999874 34555555554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=227.91 Aligned_cols=278 Identities=21% Similarity=0.339 Sum_probs=220.7
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCCCc------eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1046 TALLQ-PFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1046 sL~fs-pdg~~Latgs~Dg~I~IWd~~tg~------~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
.+..+ |.+++|.+|+.||.|++|+..... .+.+++.|. ..|+++... .+++.|++++.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIILC--GNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHhh--cCCCceEEecCCceEEEeecc
Confidence 45554 456689999999999999876432 366788888 889999884 688899999999999999986
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEE-ecCCCeEEEEECCCeEEEEECCCCce-e--------eeeec-CCCCCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQ-M--------VNPIP-SSSDCS 1187 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~-sp~~~~Lla~g~Dg~I~VWDl~t~~~-~--------v~~i~-~~~~~~ 1187 (1354)
. +. ..+.+++..|...|.| +++ -++...+++||-|+.|.+||++++.. . ...+. ++.. .
T Consensus 104 ~--~~---~~c~stir~H~DYVkc----la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-s 173 (735)
T KOG0308|consen 104 K--DN---TFCMSTIRTHKDYVKC----LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-S 173 (735)
T ss_pred c--Cc---chhHhhhhcccchhee----eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-c
Confidence 6 21 2334678999999999 666 66777888889999999999997631 1 22233 3334 4
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~ 1267 (1354)
|+++ +..+.|..|++|+..+.+++||.|+.++..+ +.||...|..+..+++ |..++++|.||+|++||+...
T Consensus 174 iYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kimk----LrGHTdNVr~ll~~dD--Gt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 174 IYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK----LRGHTDNVRVLLVNDD--GTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred eeee-ecCCcceEEEecCcccceEEeccccccceee----eeccccceEEEEEcCC--CCeEeecCCCceEEeeecccc-
Confidence 9999 6777888999999999999999999885554 3388899999999999 999999999999999999987
Q ss_pred ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1268 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1268 ~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
.++.++..|...|+++..+|+-..+.+|+.||.|..=|+......++-. . ...+|..+..+.+..-+-+++.|
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic-k------~daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC-K------EDAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-c------CCCchhhhhhccccCCceeeecc
Confidence 7999999999999999999999999999999999998866532222222 1 12567777776555555666778
Q ss_pred CeEEEc
Q 000681 1348 ACVSIH 1353 (1354)
Q Consensus 1348 g~V~IW 1353 (1354)
+.|+-|
T Consensus 319 s~I~rW 324 (735)
T KOG0308|consen 319 SSIKRW 324 (735)
T ss_pred ccceec
Confidence 888777
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=205.57 Aligned_cols=286 Identities=13% Similarity=0.224 Sum_probs=222.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------------C------ceEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------D------TLLNSFDNHDFPDKGISKLCLVNELDVS 1101 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t------------g------~~l~~~~~h~~~~~~ItsL~f~~s~d~~ 1101 (1354)
...++.+-+|++||.++++|+.|..|+|.|++. | -.++++..|. ..|+++.| .|...
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~---devn~l~F--HPre~ 185 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV---DEVNDLDF--HPRET 185 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc---Ccccceee--cchhh
Confidence 346789999999999999999999999999871 1 3467777888 89999999 57899
Q ss_pred EEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000681 1102 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1181 (1354)
Q Consensus 1102 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~ 1181 (1354)
+|++|+.|++|++||... .....+++.+++ ..+|++ +.|+|.|.++++|.+-.++++||+++-+ |...-.
T Consensus 186 ILiS~srD~tvKlFDfsK----~saKrA~K~~qd-~~~vrs----iSfHPsGefllvgTdHp~~rlYdv~T~Q-cfvsan 255 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSK----TSAKRAFKVFQD-TEPVRS----ISFHPSGEFLLVGTDHPTLRLYDVNTYQ-CFVSAN 255 (430)
T ss_pred eEEeccCCCeEEEEeccc----HHHHHHHHHhhc-cceeee----EeecCCCceEEEecCCCceeEEecccee-EeeecC
Confidence 999999999999999854 222223333432 346777 9999999999999999999999999988 654432
Q ss_pred --CCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000681 1182 --SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1259 (1354)
Q Consensus 1182 --~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~ 1259 (1354)
..+...|+++ -+++.|++.++|+.||.|++||--+++++...-+.|. ...|.+..|..+ |+++++.+.|..|+
T Consensus 256 Pd~qht~ai~~V-~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~--gsevcSa~Ftkn--~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 256 PDDQHTGAITQV-RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG--GSEVCSAVFTKN--GKYILSSGKDSTVK 330 (430)
T ss_pred cccccccceeEE-EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--CceeeeEEEccC--CeEEeecCCcceee
Confidence 2233449999 7788999999999999999999988874433323333 367999999998 99999999999999
Q ss_pred EEeCCCCCccEEEEecCC-----CCeEEEEEcCCCCEEEEEe-CCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEE
Q 000681 1260 FLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGS-AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCL 1332 (1354)
Q Consensus 1260 IWDl~~~~~~v~~l~~h~-----~~VtsLafspdg~~Lasgs-~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sL 1332 (1354)
+|.+.++ .++..+.+-. ..-+...|+....++..-. ..+.+.-|| .++..+..+.. +|.+.+..+
T Consensus 331 LWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-------gHn~a~R~i 402 (430)
T KOG0640|consen 331 LWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-------GHNGAVRWI 402 (430)
T ss_pred eeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-------CCCCCceEE
Confidence 9999998 6888777531 1123345666666665443 246788899 44444443333 244899999
Q ss_pred EEecCCCEEEEEECCCeEEEc
Q 000681 1333 TFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1333 afspdg~~Lasgs~Dg~V~IW 1353 (1354)
.-+|.+..+.+|+.|..+++|
T Consensus 403 ~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred EeCCCCCceeeecccceeeee
Confidence 999999999999999999999
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-20 Score=223.01 Aligned_cols=225 Identities=13% Similarity=0.185 Sum_probs=175.6
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------ceEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEeCCCeE
Q 000681 1042 KGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNI 1112 (1354)
Q Consensus 1042 ~~I~sL~fsp-dg~~Latgs~Dg~I~IWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~~s~d-~~~L~tgs~DG~I 1112 (1354)
..|++++|+| ++.+|++|+.|++|+|||+.++ +.+..+.+|. ..|.+++| +++ +++|++|+.||+|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---~~V~~l~f--~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---KKVGIVSF--HPSAMNVLASAGADMVV 150 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---CcEEEEEe--CcCCCCEEEEEeCCCEE
Confidence 5799999999 7889999999999999999765 3467788998 89999999 455 4799999999999
Q ss_pred EEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
+|||+.+ +.. . ..+.+|...|.+ ++|++++..|++++.||.|++||+++++ .+..+..|....+..+
T Consensus 151 rIWDl~t--g~~--~---~~l~~h~~~V~s----la~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~- 217 (493)
T PTZ00421 151 NVWDVER--GKA--V---EVIKCHSDQITS----LEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRC- 217 (493)
T ss_pred EEEECCC--CeE--E---EEEcCCCCceEE----EEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEE-
Confidence 9999966 322 2 346788888888 9999999999999999999999999998 8888888766534445
Q ss_pred EEcCCCCEEEEEE----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCCCC
Q 000681 1193 ASQVHGGQLAAGF----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs----~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~~~ 1267 (1354)
.+.+++..+++++ .|+.|++||+++.......... .+...+....|+++ +.+|++|+ .||.|++||++++
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d--~~~L~lggkgDg~Iriwdl~~~- 292 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDED--TNLLYIGSKGEGNIRCFELMNE- 292 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCC--CCEEEEEEeCCCeEEEEEeeCC-
Confidence 4555666666543 4799999999976544443321 22345666778888 88888887 5999999999987
Q ss_pred ccEEEEec-CCCCeEEEEEcCCC
Q 000681 1268 DAYLTIDA-HRGSLSALAVHRHA 1289 (1354)
Q Consensus 1268 ~~v~~l~~-h~~~VtsLafspdg 1289 (1354)
.++..... +..++..++|.|..
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred ceEEEeeccCCCCCcceEecccc
Confidence 46555443 44577888888853
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=217.87 Aligned_cols=253 Identities=18% Similarity=0.326 Sum_probs=202.6
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCce----------EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000681 1041 EKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL----------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1109 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~----------l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D 1109 (1354)
.+.|+.+.+-|..+ ++|+++..+.|.|||+.+..- -.++.+|. ..-.+|+|. ......|++|+.|
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~---~eg~glsWn-~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE---KEGYGLSWN-RQQEGTLLSGSDD 199 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec---ccccccccc-cccceeEeeccCC
Confidence 36788888888665 677788899999999875311 12677888 446678883 4577899999999
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EECCCeEEEEECCC--CceeeeeecCCCCC
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEK--EQQMVNPIPSSSDC 1186 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g~Dg~I~VWDl~t--~~~~v~~i~~~~~~ 1186 (1354)
++|++||+.........+.+...+.+|...|.. ++|++....++. +++|+.+.|||+++ .+ +.....+|...
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~~~ 274 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHSAE 274 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccCCc
Confidence 999999997633322334444568899999999 899887666554 58999999999994 44 66666676655
Q ss_pred CeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000681 1187 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1266 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~ 1266 (1354)
|.|+++.+.++.+|++|+.|++|++||+|+...... .+.+|...|.+|.|+|+ ....|++++.|+.+.+||+..-
T Consensus 275 -vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 275 -VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred -eeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEEeCCC-CCceeEecccCCcEEEEecccc
Confidence 999977777788999999999999999998775444 45578899999999999 7899999999999999998743
Q ss_pred C-------------ccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 000681 1267 K-------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1267 ~-------------~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+ +++..-.+|...|..+.|+|+.+ .|++.+.|+.+.||...
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2 34566778999999999999988 67788999999999965
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=216.94 Aligned_cols=280 Identities=15% Similarity=0.238 Sum_probs=228.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1116 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWd 1116 (1354)
.+.-|.++.++...+++.||+ .|.|+|||+... ..+..+...+ ++.-|.++.. .+||+.|++|+.-.++.|||
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL--~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKL--LPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC-cccceeeeEe--cCCCceEEeccccceeeeee
Confidence 345678889999999999998 899999999743 2333343332 2357888888 58999999999999999999
Q ss_pred ccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
+....-..+. .+.......+. ++.+|+.+..+++..||.|.|||+.+.. .++.+++|.+. +.|| ..+.
T Consensus 494 LAapTprika-----eltssapaCyA----La~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG-ascI-dis~ 561 (705)
T KOG0639|consen 494 LAAPTPRIKA-----ELTSSAPACYA----LAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI-DISK 561 (705)
T ss_pred ccCCCcchhh-----hcCCcchhhhh----hhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC-ceeE-EecC
Confidence 9662222111 12222223333 7889999999999999999999999999 99999999988 9999 7788
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1276 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h 1276 (1354)
+|..|.+|+-|.+||.||+|.+..+.+ + ...+.|.++..+|. +.+++.|-.++.+.|...... ....+.-|
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqq----h-dF~SQIfSLg~cP~--~dWlavGMens~vevlh~skp--~kyqlhlh 632 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQ----H-DFSSQIFSLGYCPT--GDWLAVGMENSNVEVLHTSKP--EKYQLHLH 632 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhh----h-hhhhhheecccCCC--ccceeeecccCcEEEEecCCc--cceeeccc
Confidence 999999999999999999998874432 1 22478999999999 999999999999999887754 55667779
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1277 RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1277 ~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
...|.++.|.+.|+++++.+.|+.+..|.. -|..+...+. .++|.++..+.|.++++||+.|....||
T Consensus 633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCcceeeeeccCceEEEecCCCcceEEE
Confidence 999999999999999999999999999984 4666665554 4789999999999999999999888777
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=213.79 Aligned_cols=267 Identities=16% Similarity=0.270 Sum_probs=214.4
Q ss_pred hheeecCCCC-ceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 000681 1012 IAKCQRSCNS-FDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1012 i~~~q~~~~~-~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~ 1080 (1354)
+....+++.. +++++.... .+.+++..+. ..+.++.|-.||++|++|+..|.|+|+|..+...+..+.
T Consensus 29 vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ 107 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY 107 (487)
T ss_pred ceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh
Confidence 4444454432 455555443 5777887764 779999999999999999999999999988777888999
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYAS 1159 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~ 1159 (1354)
+|. .+|..+.|. ..++..+++|++|+.+++||+.+ ...+ ..+.+|+..|++ .+|+|.+. .+++|
T Consensus 108 ah~---apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~--a~v~-----~~l~~htDYVR~----g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 108 AHQ---APVHVTKFS-PQDNTMLVSGSDDKVVKYWDLST--AYVQ-----AELSGHTDYVRC----GDISPANDHIVVTG 172 (487)
T ss_pred hcc---CceeEEEec-ccCCeEEEecCCCceEEEEEcCC--cEEE-----EEecCCcceeEe----eccccCCCeEEEec
Confidence 999 899999996 36888999999999999999966 2222 348999999999 88888766 45666
Q ss_pred ECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000681 1160 GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1239 (1354)
Q Consensus 1160 g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~ 1239 (1354)
|.||.|++||++.....+.++. ++.+|.++ .+-+.|..+++++. ..|++||+-++......+ ..|...|+|++
T Consensus 173 sYDg~vrl~DtR~~~~~v~eln--hg~pVe~v-l~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~---~~H~KtVTcL~ 245 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELN--HGCPVESV-LALPSGSLIASAGG-NSVKVWDLTTGGQLLTSM---FNHNKTVTCLR 245 (487)
T ss_pred CCCceEEEEEeccCCceeEEec--CCCceeeE-EEcCCCCEEEEcCC-CeEEEEEecCCceehhhh---hcccceEEEEE
Confidence 8999999999998742555555 46679999 55567778887764 479999999776555433 23779999999
Q ss_pred EecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1240 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1240 fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+..+ +..|++|+-||.|++||+.+. +.+..+. ..++|.+++++|++..++.|-.||.+.+-+
T Consensus 246 l~s~--~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 246 LASD--STRLLSGSLDRHVKVFDTTNY-KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eecC--CceEeecccccceEEEEccce-EEEEeee-cccceeeEEecCCCceEEEecccceeeeeh
Confidence 9998 899999999999999998776 5776666 468999999999999999999999888775
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=217.20 Aligned_cols=257 Identities=13% Similarity=0.248 Sum_probs=206.3
Q ss_pred ceEEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCe
Q 000681 1022 FDLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGI 1089 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~I 1089 (1354)
..+++++.|..|++|+...+ ..|+++.|.+++.++++++.|+.+++|++++.+...++.+|. +.|
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt---dkV 264 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT---DKV 264 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc---cce
Confidence 45677888889999998654 569999999999999999999999999999999999999999 999
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1090 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1090 tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
+++.| ......+++|+.|.+|++||+.. .... +++- ....+.. ++. ....+++|-.|+.||.||
T Consensus 265 t~ak~--~~~~~~vVsgs~DRtiK~WDl~k----~~C~---kt~l-~~S~cnD----I~~--~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 265 TAAKF--KLSHSRVVSGSADRTIKLWDLQK----AYCS---KTVL-PGSQCND----IVC--SISDVISGHFDKKVRFWD 328 (459)
T ss_pred eeehh--hccccceeeccccchhhhhhhhh----hhee---cccc-ccccccc----eEe--cceeeeecccccceEEEe
Confidence 99999 34555599999999999999954 1111 1111 1111222 221 244566667999999999
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCE
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~-~h~~~I~sv~fsp~~~g~~ 1248 (1354)
.++.. ++..++.+. .|+++ ..+.+|..+.+.+.|.++.+.|+|+.. +...+.... .-....+.+.|+|+ +.|
T Consensus 329 ~Rs~~-~~~sv~~gg--~vtSl-~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd--~~Y 401 (459)
T KOG0288|consen 329 IRSAD-KTRSVPLGG--RVTSL-DLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPD--GSY 401 (459)
T ss_pred ccCCc-eeeEeecCc--ceeeE-eeccCCeEEeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCC--Cce
Confidence 99999 888888764 49999 678899999999999999999999887 444443211 11245889999999 999
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEEecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTIDAHRG--SLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~--~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+++||.||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|.
T Consensus 402 vaAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999998 46666665433 599999999999999999999999993
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=211.98 Aligned_cols=271 Identities=20% Similarity=0.305 Sum_probs=217.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE-e-----------------eCCCCCCCCeEEEEEEeeCCCCE
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-F-----------------DNHDFPDKGISKLCLVNELDVSL 1102 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~-~-----------------~~h~~~~~~ItsL~f~~s~d~~~ 1102 (1354)
...|.+|.++|++++.++++.+|+|.=|++.+|+.... + ++|. ..|.+++. ++|+.+
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~---keil~~av--S~Dgky 216 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV---KEILTLAV--SSDGKY 216 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc---ceeEEEEE--cCCCcE
Confidence 36899999999999999999999999999998864411 1 1333 67889998 789999
Q ss_pred EEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC
Q 000681 1103 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS 1182 (1354)
Q Consensus 1103 L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~ 1182 (1354)
|++|+.|..|.||+..+ . +.+ +.+.+|...|.+ ++|-.....+++++.|+.|++|++.... .+.++.+
T Consensus 217 latgg~d~~v~Iw~~~t--~--ehv---~~~~ghr~~V~~----L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyG 284 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDT--L--EHV---KVFKGHRGAVSS----LAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYG 284 (479)
T ss_pred EEecCCCceEEEecCcc--c--chh---hcccccccceee----eeeecCccceeeeecCCceEEEehhHhH-HHHHHhC
Confidence 99999999999999966 2 222 457899999998 8888888899999999999999999988 8899999
Q ss_pred CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000681 1183 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1183 ~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWD 1262 (1354)
|++. |.+|.+.+ -++.+-+|+.|+++++|++....++ .+.+|.+.+-|++|-. ...+++||.||.|.+|+
T Consensus 285 Hqd~-v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In---~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 285 HQDG-VLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFIN---DEHFVSGSDNGSIALWS 354 (479)
T ss_pred Cccc-eeeechhc-ccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEec---ccceeeccCCceEEEee
Confidence 9887 99996554 4667777889999999999544433 2335668999999965 48999999999999999
Q ss_pred CCCCCccEEEEe-cC-----------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc--eEEEEeccCCccccccCCC
Q 000681 1263 IRNHKDAYLTID-AH-----------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQKIGS 1328 (1354)
Q Consensus 1263 l~~~~~~v~~l~-~h-----------~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~--~l~~i~~~h~~fl~~~~~~ 1328 (1354)
+-+. .++.+.+ +| ..+|++++..|...++|+|+.+|.|++|.+... .+.-+.. .+ -.+.
T Consensus 355 ~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~-ls-----~~Gf 427 (479)
T KOG0299|consen 355 LLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS-LS-----LVGF 427 (479)
T ss_pred eccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee-cc-----cccE
Confidence 9887 4666554 33 127999999999999999999999999995432 2222211 11 2478
Q ss_pred eEEEEEecCCCEEEEEE
Q 000681 1329 VNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1329 V~sLafspdg~~Lasgs 1345 (1354)
|++++|+++|..+++|.
T Consensus 428 VNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 428 VNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEEccCCCEEEEec
Confidence 99999999999766664
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=214.53 Aligned_cols=254 Identities=17% Similarity=0.316 Sum_probs=197.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEE---eeeecccCCCCCcccceeEEEEecC-CCeEEEEECC
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV---TAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEV 1162 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv---s~~~~l~~h~~~V~si~~~v~~sp~-~~~Lla~g~D 1162 (1354)
+.|+.+.+.| ++..++++++..+.|.|||........... .+--.+.+|...-++ +.|++. .+.+++++.|
T Consensus 125 gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g----lsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 125 GEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYG----LSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccc----cccccccceeEeeccCC
Confidence 7788888864 678899999999999999986533332211 011136788875444 889865 5678888999
Q ss_pred CeEEEEECCCCce------eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000681 1163 SSIMLWDLEKEQQ------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1236 (1354)
Q Consensus 1163 g~I~VWDl~t~~~------~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~ 1236 (1354)
+.|++||+..... ....+.+|.+. |..+++...+...|++++.|+.+.|||+|++. .+......+|.+.|.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~-VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDV-VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcc-eehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccccCCcee
Confidence 9999999986541 23345566555 99997777788999999999999999999632 112224457889999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC--CceEE-
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQLG- 1312 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~--g~~l~- 1312 (1354)
|++|+|. ++..||+||.|++|++||+|+.+.++.++.+|...|.++.|+|+.. +||+++.|+.+.|||++ |+...
T Consensus 277 ~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999998 7899999999999999999998889999999999999999999765 89999999999999964 22211
Q ss_pred ---------EEeccCCccccccCCCeEEEEEecCCC-EEEEEECCCeEEEcC
Q 000681 1313 ---------TIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1313 ---------~i~~~h~~fl~~~~~~V~sLafspdg~-~Lasgs~Dg~V~IWd 1354 (1354)
-+-. | ++|.+.|+.+.|+|+.. .+++.+.|+.+.||.
T Consensus 356 eda~dgppEllF~-H----gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAEDGPPELLFI-H----GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhccCCcceeEE-e----cCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 0111 2 24678999999999996 466777899999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=216.85 Aligned_cols=315 Identities=15% Similarity=0.241 Sum_probs=237.5
Q ss_pred eeecCCCCceEEEeeCCCcEEEEeCCCC-------------CCeEEEEEcCC-----------CCEEEEEECCCcEEEEE
Q 000681 1014 KCQRSCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQPF-----------SPIVVAADENERIKIWN 1069 (1354)
Q Consensus 1014 ~~q~~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fspd-----------g~~Latgs~Dg~I~IWd 1069 (1354)
.+++.+-...+..--.|+.+.+||.+.- .+|..+.--|. ...++|++.||+|++||
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 4566655556666677889999999864 34555544331 12588999999999999
Q ss_pred CCCC---ceEEE--e---------eC------C--------------CCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1070 YEED---TLLNS--F---------DN------H--------------DFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1070 ~~tg---~~l~~--~---------~~------h--------------~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
++.+ ...+. + .. | -.+...+.+++. ++++.+|++|..-|++|||
T Consensus 409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEE
Confidence 8752 11100 0 00 0 001246889999 7999999999999999999
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecC---CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~---~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
++..... . -.+..|...|.| +.|+.. ...|++++.|+-|.|||+..+-..+.++.+|..+ |+++.
T Consensus 487 ~Lq~l~~--~-----~~~eAHesEilc----LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss-ITsvK 554 (1080)
T KOG1408|consen 487 DLQELEY--T-----CFMEAHESEILC----LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS-ITSVK 554 (1080)
T ss_pred Eehhhhh--h-----hheecccceeEE----EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-eeEEE
Confidence 9965211 1 236789999988 777643 4567777899999999998876577888888777 99996
Q ss_pred EEcCCC-CEEEEEECCCeEEEEECCCCCeeeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000681 1193 ASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1193 ~~s~~g-~~L~sgs~DGsVrIwDlr~~~~~~~~~~--~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~ 1269 (1354)
+.-.++ ..+++++.|..|.+ +..........+. .+.-....+..+++.|. .+++++++.|..|+|||+.++ +.
T Consensus 555 Fa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQDrnirif~i~sg-Kq 630 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQDRNIRIFDIESG-KQ 630 (1080)
T ss_pred EeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCC--cceEEEEecccceEEEecccc-ce
Confidence 654443 56888888988765 3332111111211 11222467999999999 999999999999999999998 58
Q ss_pred EEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1270 YLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1270 v~~l~~---h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
++.|++ |.+....+...|.|.|||+.+.|+++.++| .+|+.+.+..+ |. ..|+.+.|.+|.+.|++.+
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-Hs-------E~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HS-------EAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cc-------hheeeeeecccchhheeec
Confidence 888874 678899999999999999999999999999 78999999888 65 7899999999999999999
Q ss_pred CCCeEEEcC
Q 000681 1346 ADACVSIHS 1354 (1354)
Q Consensus 1346 ~Dg~V~IWd 1354 (1354)
.||.|.||.
T Consensus 703 gDgCIFvW~ 711 (1080)
T KOG1408|consen 703 GDGCIFVWK 711 (1080)
T ss_pred CCceEEEEE
Confidence 999999993
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=220.91 Aligned_cols=265 Identities=16% Similarity=0.258 Sum_probs=223.9
Q ss_pred EEEeeCCCcEEEEeCCCC-----------------------------------------------CCeEEEEEcCCCCEE
Q 000681 1024 LAVSKLNNPIACWDTRFE-----------------------------------------------KGTKTALLQPFSPIV 1056 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~-----------------------------------------------~~I~sL~fspdg~~L 1056 (1354)
+.++..|++|++||...+ .++.+++.+|+|++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 778999999999999863 679999999999999
Q ss_pred EEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccC
Q 000681 1057 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG 1135 (1354)
Q Consensus 1057 atgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~ 1135 (1354)
|+|+.-|+++||++.+-+.+..+..|. ..|.++.|.+.. ...+|++++.|..|.|||+.. +..++ +++.+
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---ny~l~---qtld~ 545 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---NYDLV---QTLDG 545 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEEeccc---ccchh---hhhcc
Confidence 999999999999999999999999999 999999996422 356899999999999999854 22333 67899
Q ss_pred CCCCcccceeEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeecCC----CCCCeEEEEEEcCCCCEEEEEECCCe
Q 000681 1136 HKPGVRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIPSS----SDCSISALTASQVHGGQLAAGFVDGS 1209 (1354)
Q Consensus 1136 h~~~V~si~~~v~~sp~~--~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~----~~~~Vtsl~~~s~~g~~L~sgs~DGs 1209 (1354)
|...|++ +.|--.+ ..++++|.|+.|..--.++.. -...+..| ....++.| ...+..+++++++.|..
T Consensus 546 HSssITs----vKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t~t~~ktTlYDm-~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 546 HSSSITS----VKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHTQTLSKTTLYDM-AVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred cccceeE----EEEeecCCceEEEeccCchhhheehhcccc-CceeccccccccccceEEEe-eeCCCcceEEEEecccc
Confidence 9999998 6665555 678899999877654333221 12222222 12237888 56788899999999999
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCC
Q 000681 1210 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289 (1354)
Q Consensus 1210 VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg 1289 (1354)
|+|||+.+++ ..+.++...+|.+....+...|. |.|+++.+.|.++.++|.-++ +++....+|...|+.+.|.+|.
T Consensus 620 irif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPS--giY~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 620 IRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPS--GIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred eEEEeccccc-eeeeecccccCCCceEEEEECCC--ccEEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccc
Confidence 9999999998 77888888889999999999999 999999999999999999998 8999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000681 1290 PIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1290 ~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+.|++.+.||.|.||.+.
T Consensus 696 kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhheeecCCceEEEEECc
Confidence 999999999999999964
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=196.14 Aligned_cols=239 Identities=19% Similarity=0.262 Sum_probs=196.5
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC--CCe
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSS 1164 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~--Dg~ 1164 (1354)
+.|+++.| +.+|.+|++++.|.++++||... +++. +++..+.-.+.. ++|......++.++. |.+
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~--g~~~-----~ti~skkyG~~~----~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLS--GKQV-----KTINSKKYGVDL----ACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCC--Ccee-----eEeecccccccE----EEEecCCceEEEccCCCCCc
Confidence 78999999 78999999999999999999976 3332 234555555555 677777777777764 889
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000681 1165 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1165 I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~ 1244 (1354)
||..++.+.+ .++.+++|... |+++ ..+|.+..+++++.|++||+||+|..++..... ...-..++|.|.
T Consensus 82 IryLsl~dNk-ylRYF~GH~~~-V~sL-~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------~~~~pi~AfDp~- 151 (311)
T KOG1446|consen 82 IRYLSLHDNK-YLRYFPGHKKR-VNSL-SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN------LSGRPIAAFDPE- 151 (311)
T ss_pred eEEEEeecCc-eEEEcCCCCce-EEEE-EecCCCCeEEecccCCeEEeeEecCCCCceEEe------cCCCcceeECCC-
Confidence 9999999999 99999999887 9999 667778999999999999999999776443322 133446789999
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-CccEEEEecC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCC
Q 000681 1245 DPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHP 1319 (1354)
Q Consensus 1245 ~g~~Lasgs~DG~I~IWDl~~~-~~~v~~l~~h---~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~ 1319 (1354)
|-++|+|.....|++||+|+. +.|..++... ....+.+.|+|+|++|..++..+.+++.| .+|..+.++.. +.
T Consensus 152 -GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~ 229 (311)
T KOG1446|consen 152 -GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-YP 229 (311)
T ss_pred -CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-cc
Confidence 999999998889999999975 4577777654 56789999999999999999999999999 89999999887 65
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1320 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1320 ~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+ ...--...+|+||++++.+|+.||+|.+|+
T Consensus 230 ~----~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 230 N----AGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred C----CCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 2 112236778999999999999999999995
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=220.09 Aligned_cols=315 Identities=17% Similarity=0.269 Sum_probs=243.3
Q ss_pred CCceEEEeeCCCcEEEEeCCCC----------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceEEEeeC
Q 000681 1020 NSFDLAVSKLNNPIACWDTRFE----------------KGTKTALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDN 1081 (1354)
Q Consensus 1020 ~~~~L~~s~~d~~I~iWd~~~~----------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg--~~l~~~~~ 1081 (1354)
.+..+.+++-|+.|++|+.... ..|+.+....+++.|++++.|-+|++|+...+ -++.++..
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 3456999999999999998754 45677777888999999999999999999877 56778889
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeee-----eccc-CCCCCcccceeEEEEecCCCe
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF-----SSIQ-GHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~-----~~l~-~h~~~V~si~~~v~~sp~~~~ 1155 (1354)
|. .-|.++++. .++..++++||-|+.|.+||+.+. ...++-.+ ..+. |+..+|++ ++-++.+..
T Consensus 116 H~---DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~--~~~l~~s~n~~t~~sl~sG~k~siYS----LA~N~t~t~ 185 (735)
T KOG0308|consen 116 HK---DYVKCLAYI-AKNNELVASGGLDRKIFLWDINTG--TATLVASFNNVTVNSLGSGPKDSIYS----LAMNQTGTI 185 (735)
T ss_pred cc---chheeeeec-ccCceeEEecCCCccEEEEEccCc--chhhhhhccccccccCCCCCccceee----eecCCcceE
Confidence 99 899999995 578899999999999999999762 21122111 2223 67777777 888888878
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1156 Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
+++||..+.+++||.++.+ .+..+++|.+. |..+ ....+|..+++++.||+|++||++..++ ...+. .|...|
T Consensus 186 ivsGgtek~lr~wDprt~~-kimkLrGHTdN-Vr~l-l~~dDGt~~ls~sSDgtIrlWdLgqQrC-l~T~~---vH~e~V 258 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCK-KIMKLRGHTDN-VRVL-LVNDDGTRLLSASSDGTIRLWDLGQQRC-LATYI---VHKEGV 258 (735)
T ss_pred EEecCcccceEEecccccc-ceeeeeccccc-eEEE-EEcCCCCeEeecCCCceEEeeeccccce-eeeEE---eccCce
Confidence 8888999999999999999 89999999887 9999 7889999999999999999999998874 33333 455789
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEe
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~ 1315 (1354)
.++..+|+ -..+++|+.||.|..=|+++.......+ ....+|..+..+.+.+-+-+++.|+.|+-|......-....
T Consensus 259 WaL~~~~s--f~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s 335 (735)
T KOG0308|consen 259 WALQSSPS--FTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVS 335 (735)
T ss_pred EEEeeCCC--cceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCccccccccC
Confidence 99999998 8999999999999999999863344333 34667888888877666677888999999974321111100
Q ss_pred ccCCcc-----------------ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1316 YHHPSF-----------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1316 ~~h~~f-----------------l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+....+ .-.....|..-+.-.|.+.++|-...|.+.+||
T Consensus 336 ~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 336 GDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 000000 001112344445556788999999999999997
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-19 Score=210.51 Aligned_cols=321 Identities=17% Similarity=0.226 Sum_probs=243.1
Q ss_pred eecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCC
Q 000681 1015 CQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF 1084 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~ 1084 (1354)
+.++.+...++.+...|.+.+||.+++ .+|+++.=+|--+.+|+|..+|+|.|+|+..++.+.+|+...
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~- 244 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW- 244 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc-
Confidence 455666678999999999999999987 789999999999999999999999999999999999999876
Q ss_pred CCCCeEEEEEEeeCCCCE-EEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCC
Q 000681 1085 PDKGISKLCLVNELDVSL-LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1163 (1354)
Q Consensus 1085 ~~~~ItsL~f~~s~d~~~-L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg 1163 (1354)
++|+++.| ..||.. +++|+..|.+-+||++. .++.. .....|.+.+.. ..|.+....+++++.|+
T Consensus 245 --g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~----kkl~~--v~~nah~~sv~~----~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 245 --GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEK----KKLIN--VTRNAHYGSVTG----ATFLPGEPVLVTAGADN 310 (910)
T ss_pred --cceeEEEe--ccCCCeeEEeccCCceEEEEEcCC----Ceeee--eeeccccCCccc----ceecCCCceEeeccCCC
Confidence 79999999 567765 56666679999999955 22221 224567777777 67777888888889999
Q ss_pred eEEEEECCCCc--eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------
Q 000681 1164 SIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR------------------------- 1216 (1354)
Q Consensus 1164 ~I~VWDl~t~~--~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr------------------------- 1216 (1354)
.+++|=..++. ..+-.++.++..+..+|.+....|..+.+++.|++.+.|++.
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 98888555332 123334444555577776666667777777777766665543
Q ss_pred ----------------------------------------CCCeeeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000681 1217 ----------------------------------------TPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQ 1254 (1354)
Q Consensus 1217 ----------------------------------------~~~~~~~~~~--~~~~h~~~I~sv~fsp~~~g~~Lasgs~ 1254 (1354)
+...-...+. .+......+++++.++. |++.+.|+.
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C--GNF~~IG~S 468 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC--GNFVFIGYS 468 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc--CceEEEecc
Confidence 2110000000 00111256889999999 999999999
Q ss_pred CCcEEEEeCCCCCccEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce-EE---------EEeccCCc-
Q 000681 1255 AGDIQFLDIRNHKDAYLTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LG---------TIRYHHPS- 1320 (1354)
Q Consensus 1255 DG~I~IWDl~~~~~~v~~l---~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~-l~---------~i~~~h~~- 1320 (1354)
.|.|-+|++.++ ....++ ..|.++|++++...-++.+++++.+|.+++||..++. +. .+.+ |..
T Consensus 469 ~G~Id~fNmQSG-i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~-hr~s 546 (910)
T KOG1539|consen 469 KGTIDRFNMQSG-IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVY-HRVS 546 (910)
T ss_pred CCeEEEEEcccC-eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeee-eehh
Confidence 999999999998 566677 4899999999999999999999999999999976443 11 1222 110
Q ss_pred ---------c---------------ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1321 ---------F---------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1321 ---------f---------------l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
| +.+|.+.|++++|||||++|++++.|++|++||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 235789999999999999999999999999997
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=220.75 Aligned_cols=240 Identities=10% Similarity=0.143 Sum_probs=176.4
Q ss_pred eeCCCcEEEEeCCCC----------CCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCc--------eEEEeeCCCCCCC
Q 000681 1027 SKLNNPIACWDTRFE----------KGTKTALLQPF-SPIVVAADENERIKIWNYEEDT--------LLNSFDNHDFPDK 1087 (1354)
Q Consensus 1027 s~~d~~I~iWd~~~~----------~~I~sL~fspd-g~~Latgs~Dg~I~IWd~~tg~--------~l~~~~~h~~~~~ 1087 (1354)
++..+.+++|+.... ..|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|. .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~---~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK---K 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC---C
Confidence 445667888875332 67999999997 7899999999999999997542 344678888 8
Q ss_pred CeEEEEEEeeCCCCE-EEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEE
Q 000681 1088 GISKLCLVNELDVSL-LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~-L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~ 1166 (1354)
.|.+++| ++++.. |++|+.||+|+|||+.+ +.... .+. |...|.+ ++|++++..|++++.|+.|+
T Consensus 127 ~V~sVaf--~P~g~~iLaSgS~DgtIrIWDl~t--g~~~~-----~i~-~~~~V~S----lswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 127 KISIIDW--NPMNYYIMCSSGFDSFVNIWDIEN--EKRAF-----QIN-MPKKLSS----LKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred cEEEEEE--CCCCCeEEEEEeCCCeEEEEECCC--CcEEE-----EEe-cCCcEEE----EEECCCCCEEEEEecCCEEE
Confidence 9999999 566665 57899999999999976 22211 122 3455666 99999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEE----EcCCCCEEEEEECCC----eEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000681 1167 LWDLEKEQQMVNPIPSSSDCSISALTA----SQVHGGQLAAGFVDG----SVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1167 VWDl~t~~~~v~~i~~~~~~~Vtsl~~----~s~~g~~L~sgs~DG----sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv 1238 (1354)
|||++++. .+..+.+|.+. +.+..+ ++++++++++++.|+ .|+|||++.....+... .+..+.+.+...
T Consensus 193 IwD~Rsg~-~i~tl~gH~g~-~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~ 269 (568)
T PTZ00420 193 IIDPRKQE-IASSFHIHDGG-KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SIDNASAPLIPH 269 (568)
T ss_pred EEECCCCc-EEEEEecccCC-ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-EecCCccceEEe
Confidence 99999998 88889888765 332212 347888888887774 79999999644344444 333333333333
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec--CCCCeEEEEEcCCCC
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~--h~~~VtsLafspdg~ 1290 (1354)
...++ +.++++|+.|+.|++|++..+ .+..+.. +..++.+++|.|...
T Consensus 270 ~D~~t--g~l~lsGkGD~tIr~~e~~~~--~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 270 YDEST--GLIYLIGKGDGNCRYYQHSLG--SIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eeCCC--CCEEEEEECCCeEEEEEccCC--cEEeecccccCCCccceEEccccc
Confidence 33344 899999999999999999866 3333332 456788999999643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=207.03 Aligned_cols=285 Identities=15% Similarity=0.235 Sum_probs=221.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--CceEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t--g~~l~~~~~h~~~~~~ItsL~f~~s~d~~-~L~tgs~DG~IrIWdl~ 1118 (1354)
.+|++|.|||.-++|++|+.|++++||.++. ...++.+.-.. .+|.+.+| .++|. .+++++.......||+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f--~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEF--APNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc---Cccceeee--cCCCceEEEecccceEEEEeecc
Confidence 8899999999999999999999999998763 34556655555 78999999 57888 89999999999999997
Q ss_pred CCCCcceEEeeeecccCCCC-CcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKP-GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~-~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~ 1197 (1354)
+ .+..-+ ....++.. .+.. ...++++++|+..|..|.|.+....++. .+.+++.. ..|..+ .++.+
T Consensus 289 ~--ak~~k~---~~~~g~e~~~~e~----FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~Kie--G~v~~~-~fsSd 355 (514)
T KOG2055|consen 289 T--AKVTKL---KPPYGVEEKSMER----FEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIE--GVVSDF-TFSSD 355 (514)
T ss_pred c--cccccc---cCCCCcccchhhe----eEecCCCCeEEEcccCceEEeehhhhhh-hhheeeec--cEEeeE-EEecC
Confidence 6 333222 33444443 2333 6778999999999999999999999998 88777753 348888 56678
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC-----CccEEE
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-----KDAYLT 1272 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~-----~~~v~~ 1272 (1354)
++.|++.+.+|.|.+||++... +...+.... .-.-++++.+++ +.+||+||..|.|.|||..+. ..|+.+
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G--~v~gts~~~S~n--g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNS-CLHRFVDDG--SVHGTSLCISLN--GSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcc-eEEEEeecC--ccceeeeeecCC--CceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 9999999999999999999986 555553321 123345666677 999999999999999996532 256777
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCceEE-EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1273 IDAHRGSLSALAVHRHAPIIASGSA--KQLIKVFSLEGEQLG-TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1273 l~~h~~~VtsLafspdg~~Lasgs~--Dg~I~Iwd~~g~~l~-~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
+..-...|++|.|++++++||.+|. +..+++-.+....+. .+.. .....+.|+|++|+|.+.+||.|..+|.
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-----~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-----SNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-----CCCcccceEEEEecCCCceEEeecCCCc
Confidence 7766778999999999999988765 567887775433222 1211 1235678999999999999999999999
Q ss_pred EEEcC
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 V~IWd 1354 (1354)
|.+|.
T Consensus 506 v~l~k 510 (514)
T KOG2055|consen 506 VHLFK 510 (514)
T ss_pred eeeEe
Confidence 99993
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=194.59 Aligned_cols=242 Identities=19% Similarity=0.286 Sum_probs=197.3
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecC-CCe
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGY 1155 (1354)
Q Consensus 1077 ~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~-~~~ 1155 (1354)
+.+++|. ..|.+++| +.+|..|++|+.|++++||++....-..+. ...+|...|.. ++|+|. ...
T Consensus 14 r~~~~~~---~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~-----~~~gh~~svdq----l~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHV---QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL-----VYRGHTDSVDQ----LCWDPKHPDL 79 (313)
T ss_pred HHhhhhh---hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh-----cccCCCcchhh----heeCCCCCcc
Confidence 3455666 78999999 789999999999999999999663222222 36788888887 777765 456
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1156 Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
+++++.|++|++||+++++ ++..+....+. |.- .++|+|+++++|..|..|.+.|.|+.+ ..... . ....+
T Consensus 80 ~atas~dk~ir~wd~r~~k-~~~~i~~~~en-i~i--~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~-~---~~~e~ 150 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGK-CTARIETKGEN-INI--TWSPDGEYIAVGNKDDRITFIDARTYK-IVNEE-Q---FKFEV 150 (313)
T ss_pred eEEecCCceEEEEEeccCc-EEEEeeccCcc-eEE--EEcCCCCEEEEecCcccEEEEEecccc-eeehh-c---cccee
Confidence 6777899999999999999 88888765554 443 478899999999999999999999887 33332 1 22678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceEEEE
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTI 1314 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i 1314 (1354)
..+.|+-. ++.++..+..|.|.|...... +++.++++|.....|+.|+|+|+++|+|+.|..+.+||++. -.+..+
T Consensus 151 ne~~w~~~--nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 151 NEISWNNS--NDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeecCC--CCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 89999955 788888888899999999887 79999999999999999999999999999999999999753 334444
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1315 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1315 ~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
.- ++ -+|..++|+.+|++||+|+.|..|-|
T Consensus 228 sR-ld-------wpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 SR-LD-------WPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cc-cc-------CceEEEEeccCcceeeccCccceEEe
Confidence 44 43 68999999999999999999988754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=225.56 Aligned_cols=274 Identities=15% Similarity=0.247 Sum_probs=222.3
Q ss_pred hheeecCCCCceEEEee--CCCcEEEEeCCCC----------------------CCeEEEEEcCCCCEEEEEECCCcEEE
Q 000681 1012 IAKCQRSCNSFDLAVSK--LNNPIACWDTRFE----------------------KGTKTALLQPFSPIVVAADENERIKI 1067 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~--~d~~I~iWd~~~~----------------------~~I~sL~fspdg~~Latgs~Dg~I~I 1067 (1354)
|-...-++++..+++++ .|+.+.+|+.+.- ..|+|+.|+|||++||+|++|+.|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 44455677888899998 8888889998641 77999999999999999999999999
Q ss_pred EECCC-------C-----------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEee
Q 000681 1068 WNYEE-------D-----------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA 1129 (1354)
Q Consensus 1068 Wd~~t-------g-----------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~ 1129 (1354)
|.... | +.+..+.+|. +.|.+++| ++++.+|++++.|++|.||+..+ . +..
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~t--F--~~~-- 164 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKT--F--ELL-- 164 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCC---Cccceecc--CCCccEEEEecccceEEEEcccc--c--eee--
Confidence 98872 1 3677788999 99999999 78999999999999999999866 2 222
Q ss_pred eecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC-----CCeEEEEEEcCCCCEEEEE
Q 000681 1130 FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD-----CSISALTASQVHGGQLAAG 1204 (1354)
Q Consensus 1130 ~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~-----~~Vtsl~~~s~~g~~L~sg 1204 (1354)
+.+.+|...|.+ +.|+|-|.++++-++|++|+||++.+.. +.+.+..+.. ..+..+ .|+|+|.+|++.
T Consensus 165 -~vl~~H~s~VKG----vs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~Rl-SWSPDG~~las~ 237 (942)
T KOG0973|consen 165 -KVLRGHQSLVKG----VSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRL-SWSPDGHHLASP 237 (942)
T ss_pred -eeeecccccccc----eEECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeec-ccCCCcCeecch
Confidence 568999999999 9999999999999999999999988766 6777765433 235667 689999999986
Q ss_pred EC----CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CC--------CC----EEEEEECCCcEEEEeCCC
Q 000681 1205 FV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LD--------PA----KIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1205 s~----DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~---~~--------g~----~Lasgs~DG~I~IWDl~~ 1265 (1354)
.. -.++.|.+..+.+.-. .+-||.+++.++.|+|. .+ .+ .+|+|+.|++|-||....
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~----~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDK----DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred hhccCCcceeEEEecCCceeee----eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 43 3368888876555222 44588899999999985 01 11 789999999999999977
Q ss_pred CCccEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1266 HKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1266 ~~~~v~~l~-~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
. .|+..+. -....|..++|+|||..|.++|.||+|.++.++.
T Consensus 314 ~-RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 314 P-RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred C-CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 6 4554333 3467899999999999999999999999999763
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=196.07 Aligned_cols=255 Identities=20% Similarity=0.303 Sum_probs=196.1
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeE
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1077 ~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
+.+....++...|.+|+|.+ ....++++|+.||+||+|++... +...- +....|..+|.+ ++|+.++..+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~-g~~~~----ka~~~~~~PvL~----v~WsddgskV 87 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNS-GQLVP----KAQQSHDGPVLD----VCWSDDGSKV 87 (347)
T ss_pred cceecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecC-Ccccc----hhhhccCCCeEE----EEEccCCceE
Confidence 34555567778999999953 36677789999999999999762 22111 446678888887 9999999999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC-CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g-~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
++|+.|+.+++||+.+++ +..+..|... |.++.++.... ..|++|+.|.+|++||.|....+. .+ .+. ..+
T Consensus 88 f~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~-~LP---eRv 159 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ--VSQVAAHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TL-QLP---ERV 159 (347)
T ss_pred EeeccCCceEEEEccCCC--eeeeeecccc-eeEEEEecCCCcceeEecccccceeecccCCCCeee-ee-ecc---cee
Confidence 999999999999999997 6667766554 99997776433 489999999999999999887443 33 222 567
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC---ceE
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG---EQL 1311 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~-h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g---~~l 1311 (1354)
.++..- ...++++..+..|.+|+++++....+.+.. -+-.++|++...++.-.|.|+-+|.+.|..++. ..-
T Consensus 160 Ya~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 160 YAADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred eehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 777763 568899999999999999876322222221 234689999999999889999999999998653 455
Q ss_pred EEEeccCCccc--cccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1312 GTIRYHHPSFM--AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1312 ~~i~~~h~~fl--~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+|+. |..-. ......|++++|||....|+|+|.||++.+||
T Consensus 236 FtFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 236 FTFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eeEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 66787 65211 11245789999999999999999999999997
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=192.70 Aligned_cols=238 Identities=17% Similarity=0.299 Sum_probs=195.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|++++.+ ++++|+|+.|.+|+|||..+...+..+..|. +.|+++.|........|++|++||.|.+|+.
T Consensus 44 ~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~---- 114 (362)
T KOG0294|consen 44 GSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRV---- 114 (362)
T ss_pred cceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEc----
Confidence 678888875 8899999999999999999999999999998 9999999954333448999999999999998
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
+..+++ ..+++|...|+. ++.+|.+..-++.|.|+.++.||+-+++ .-...+-.+.. +.+ .|.+.|.+|
T Consensus 115 ~~W~~~---~slK~H~~~Vt~----lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~a--t~v-~w~~~Gd~F 183 (362)
T KOG0294|consen 115 GSWELL---KSLKAHKGQVTD----LSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNKA--TLV-SWSPQGDHF 183 (362)
T ss_pred CCeEEe---eeecccccccce----eEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCcc--eee-EEcCCCCEE
Confidence 556666 778999999998 8999999999999999999999999888 44444443332 446 667899999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
+.+..+ .|-+|.+.+.. +.... .. ...+.++.|- ++.++++|+.|+.|++||.... .+...+.+|...|.
T Consensus 184 ~v~~~~-~i~i~q~d~A~-v~~~i-~~---~~r~l~~~~l---~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 184 VVSGRN-KIDIYQLDNAS-VFREI-EN---PKRILCATFL---DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVK 253 (362)
T ss_pred EEEecc-EEEEEecccHh-Hhhhh-hc---cccceeeeec---CCceEEEecCCceEEEeccCCC-ccceeeecchhhee
Confidence 988876 48899988766 32222 11 1446677664 3789999999999999999986 79999999999999
Q ss_pred EEEE--cCCCCEEEEEeCCCcEEEEeCCCc
Q 000681 1282 ALAV--HRHAPIIASGSAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1282 sLaf--spdg~~Lasgs~Dg~I~Iwd~~g~ 1309 (1354)
++.+ .|++.+|+|+|.||.|+|||++-+
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9985 567789999999999999997643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=205.19 Aligned_cols=263 Identities=17% Similarity=0.290 Sum_probs=204.0
Q ss_pred CCCceEEEeeCCCcEEEEeCCCC----------------------------CCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 000681 1019 CNSFDLAVSKLNNPIACWDTRFE----------------------------KGTKTALLQPFSPIVVAADENERIKIWNY 1070 (1354)
Q Consensus 1019 ~~~~~L~~s~~d~~I~iWd~~~~----------------------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~ 1070 (1354)
++.....+++.+++|.-|+..++ ..|.+++.++||++||+|+.|..|.||+.
T Consensus 152 ~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~ 231 (479)
T KOG0299|consen 152 PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDC 231 (479)
T ss_pred ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecC
Confidence 34445666777778888887665 34789999999999999999999999999
Q ss_pred CCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEe
Q 000681 1071 EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1150 (1354)
Q Consensus 1071 ~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~s 1150 (1354)
++.+.++.|.+|. +.|.+++| -.....|++++.|+.|++|++.. ...+ .++.+|...|.++ .-.
T Consensus 232 ~t~ehv~~~~ghr---~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~----~s~v---etlyGHqd~v~~I----daL 295 (479)
T KOG0299|consen 232 DTLEHVKVFKGHR---GAVSSLAF--RKGTSELYSASADRSVKVWSIDQ----LSYV---ETLYGHQDGVLGI----DAL 295 (479)
T ss_pred cccchhhcccccc---cceeeeee--ecCccceeeeecCCceEEEehhH----hHHH---HHHhCCccceeee----chh
Confidence 9999999999999 99999999 56778999999999999999854 2223 5678999998884 333
Q ss_pred cCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC-
Q 000681 1151 QQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT- 1229 (1354)
Q Consensus 1151 p~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~- 1229 (1354)
.....+-+|+.|+++++|++..+. ...+.++.++ +-|+++. +...|++|+.||.|.+|++-..+.+......|.
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~s-idcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGS-IDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred cccceEEeccccceeEEEeccccc--eeeeeCCCCC-eeeEEEe--cccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 344555556699999999996655 3445555555 8888666 567899999999999999988775443332221
Q ss_pred -------CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC---ccEEEEecCCCCeEEEEEcCCCCEEEEE-eCC
Q 000681 1230 -------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASG-SAK 1298 (1354)
Q Consensus 1230 -------~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~---~~v~~l~~h~~~VtsLafspdg~~Lasg-s~D 1298 (1354)
.+..||++++..|. .+++++|+.+|.|++|-+..+- .++..+. -.+.|++++|+++|+.|++| +..
T Consensus 371 ~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred cCCccccccccceeeeEeccc--CceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence 12349999999999 9999999999999999998763 3444444 46789999999999965555 555
Q ss_pred CcEEEEe
Q 000681 1299 QLIKVFS 1305 (1354)
Q Consensus 1299 g~I~Iwd 1305 (1354)
..+-=|-
T Consensus 448 hRlGRW~ 454 (479)
T KOG0299|consen 448 HRLGRWW 454 (479)
T ss_pred cccceee
Confidence 5554443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=213.12 Aligned_cols=267 Identities=16% Similarity=0.325 Sum_probs=211.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceEE--EeeCCCCCCCCeEE-EEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISK-LCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~--~~~~h~~~~~~Its-L~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
|..+++.+. ..+++++.||++++|+-..++.+. .+.+|. +-|.. ++|.. .++..|++|+.|+.|.+|....
T Consensus 17 Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~- 90 (745)
T KOG0301|consen 17 VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQ- 90 (745)
T ss_pred hheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceecc-ccCcceEeecccceEEEEecCC-
Confidence 455555543 378899999999999987665443 466666 66665 88853 6778899999999999999854
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
.. ++..+.+|...|.+ +.-..+ +.+++|+.|.++++|-... +...+++|... |.++..++. + .
T Consensus 91 -~~-----P~~~LkgH~snVC~----ls~~~~-~~~iSgSWD~TakvW~~~~---l~~~l~gH~as-VWAv~~l~e-~-~ 153 (745)
T KOG0301|consen 91 -AE-----PLYTLKGHKSNVCS----LSIGED-GTLISGSWDSTAKVWRIGE---LVYSLQGHTAS-VWAVASLPE-N-T 153 (745)
T ss_pred -CC-----chhhhhccccceee----eecCCc-CceEecccccceEEecchh---hhcccCCcchh-eeeeeecCC-C-c
Confidence 22 23568999999987 444434 4499999999999997653 56778888776 999966643 3 8
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+++|+.|.+|++|.-. + ..+ .+.+|..-|+.+++-++ ..|++++.||.|++|++. + +.+..+.+|...|
T Consensus 154 ~vTgsaDKtIklWk~~--~-~l~---tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~v 222 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGG--T-LLK---TFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFV 222 (745)
T ss_pred EEeccCcceeeeccCC--c-hhh---hhccchhheeeeEEecC---CCeEeecCCceEEEEecc-C-ceeeeeeccceEE
Confidence 9999999999999752 2 333 55688899999999876 678999999999999994 4 5999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+++...++..+++++.|++++||+.. +..+.+. |+ ...|+++.+-++|. +++|++||.|+||.
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~--lP------ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVIT--LP------TTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC-ceEEEEe--cC------ccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 999988888899999999999999976 6666665 33 25799999988886 56777899999984
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=219.30 Aligned_cols=290 Identities=17% Similarity=0.253 Sum_probs=222.5
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000681 1036 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1111 (1354)
Q Consensus 1036 Wd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg----~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~ 1111 (1354)
|..+......+|...++-..++.++ ...++||.+... ++...++........+.+++|. +-+.++|+|++..|.
T Consensus 34 ~~~~~k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 34 MNCKLKAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGV 111 (839)
T ss_pred eeeecccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCc
Confidence 6666667788899999998888888 678888877643 2222222222111356678885 678899999999999
Q ss_pred EEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEE
Q 000681 1112 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1112 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vts 1190 (1354)
|.+||+... ....+. ..+..|...+.+ ++|++... .|++|+.||.|++||++..+ -..++.+..++ |..
T Consensus 112 i~vWdlnk~-~rnk~l---~~f~EH~Rs~~~----ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSES-iRD 181 (839)
T KOG0269|consen 112 ISVWDLNKS-IRNKLL---TVFNEHERSANK----LDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSES-IRD 181 (839)
T ss_pred EEEEecCcc-ccchhh---hHhhhhccceee----eeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchh-hhc
Confidence 999999653 122222 347899999998 89987755 55667899999999999988 78888887666 999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-cc
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DA 1269 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~ 1269 (1354)
|.+.+..+++|+++...|.+++||+|..+.... .+..|.++|.++.|+|+ +.+||||+.|+.|+|||+.+.+ .+
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---k~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---KLTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhHHH---HhhcccCceEEEeecCC--CceeeecCCCccEEEEeccCCCccc
Confidence 988888899999999999999999998875544 44578899999999998 9999999999999999998552 33
Q ss_pred EEEEecCCCCeEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCc--eEEEEeccCCccccccCCCeEEEEEec-CCCEEEE
Q 000681 1270 YLTIDAHRGSLSALAVHRHAP-IIASGS--AKQLIKVFSLEGE--QLGTIRYHHPSFMAQKIGSVNCLTFHP-YQVLLAA 1343 (1354)
Q Consensus 1270 v~~l~~h~~~VtsLafspdg~-~Lasgs--~Dg~I~Iwd~~g~--~l~~i~~~h~~fl~~~~~~V~sLafsp-dg~~Las 1343 (1354)
..++. ...+|.++.|-|... .||+++ .|-.|+|||+... +..++.. |. ..++.++|.. |...|.+
T Consensus 257 ~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~-------~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 257 KHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HT-------DSVTGIAWDSGDRINLWS 327 (839)
T ss_pred eeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cC-------ccccceeccCCCceeeEe
Confidence 44444 346899999999877 567664 4789999997643 3345555 44 7889999965 4578899
Q ss_pred EECCCeEE
Q 000681 1344 GSADACVS 1351 (1354)
Q Consensus 1344 gs~Dg~V~ 1351 (1354)
++.||.|.
T Consensus 328 ~sKD~tv~ 335 (839)
T KOG0269|consen 328 CSKDGTVL 335 (839)
T ss_pred ecCccHHH
Confidence 99999763
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-20 Score=198.11 Aligned_cols=278 Identities=12% Similarity=0.186 Sum_probs=215.3
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------------------------CCeEEEEEcCCCCEEEEEECCC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------------------------KGTKTALLQPFSPIVVAADENE 1063 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------------------------~~I~sL~fspdg~~Latgs~Dg 1063 (1354)
.+...+++||.-+++++.|..|++.|.+.- ..|+++.|||.+.+|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 344567788888888888888888888721 6799999999999999999999
Q ss_pred cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccc
Q 000681 1064 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCS 1143 (1354)
Q Consensus 1064 ~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si 1143 (1354)
+|+++|+......+.++... ....|.++.| .|.|.+|++|.+..++|+||+.+ .+...+-..-.+|...|.+
T Consensus 195 tvKlFDfsK~saKrA~K~~q-d~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T----~QcfvsanPd~qht~ai~~- 266 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKRAFKVFQ-DTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNT----YQCFVSANPDDQHTGAITQ- 266 (430)
T ss_pred eEEEEecccHHHHHHHHHhh-ccceeeeEee--cCCCceEEEecCCCceeEEeccc----eeEeeecCcccccccceeE-
Confidence 99999997543332232211 0147999999 58999999999999999999966 2222122234568888887
Q ss_pred eeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeee
Q 000681 1144 NVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1222 (1354)
Q Consensus 1144 ~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~-~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~ 1222 (1354)
+.+++.+...++++.||.|++||--+.+ |+.++.. |.++.|++. .+..+|+++++.+.|..|++|.+.++. ++
T Consensus 267 ---V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa-~Ftkn~kyiLsSG~DS~vkLWEi~t~R-~l 340 (430)
T KOG0640|consen 267 ---VRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSA-VFTKNGKYILSSGKDSTVKLWEISTGR-ML 340 (430)
T ss_pred ---EEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeE-EEccCCeEEeecCCcceeeeeeecCCc-eE
Confidence 9999999999999999999999999999 9999874 556667777 888999999999999999999999998 44
Q ss_pred EeecCC--CCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 000681 1223 CSTRPH--TQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ 1299 (1354)
Q Consensus 1223 ~~~~~~--~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg 1299 (1354)
..+..- .+...--+...|+.. ..+++.-. ..+.+.-||.|+....-..--+|++.+..+.-+|.++.+++|+.|.
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNht--EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHT--EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCc--cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 444222 111222334556655 55655544 3578999999988433333448999999999999999999999999
Q ss_pred cEEEEe
Q 000681 1300 LIKVFS 1305 (1354)
Q Consensus 1300 ~I~Iwd 1305 (1354)
.+++|-
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999996
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=221.48 Aligned_cols=244 Identities=21% Similarity=0.358 Sum_probs=187.3
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecC-CCeEEEEECCCeEE
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIM 1166 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~-~~~Lla~g~Dg~I~ 1166 (1354)
...+|.. ..+-..++.++.. .++||.+........+.-.++. .......+-.+.|++. .++|++++..|.|.
T Consensus 41 ~~nAIs~--nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~----kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 41 KANAISV--NRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT----KQNKFYSAADVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred ccceEee--cCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc----ccceeeehhhcccccchhhhheeecCCCcEE
Confidence 3445555 3566667766644 6788887654444433311111 1111111223778754 56778888999999
Q ss_pred EEECCC---CceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000681 1167 LWDLEK---EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1243 (1354)
Q Consensus 1167 VWDl~t---~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~ 1243 (1354)
+||+.. .+ .+..+..|... ++++++.+...++|++|+.||.|++||+|..+... . ..+....|..|.|+|.
T Consensus 114 vWdlnk~~rnk-~l~~f~EH~Rs-~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-t---~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 114 VWDLNKSIRNK-LLTVFNEHERS-ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-T---FRSNSESIRDVKFSPG 187 (839)
T ss_pred EEecCccccch-hhhHhhhhccc-eeeeeeccCCccEEEecCCCceEEEEeeecccccc-c---ccccchhhhceeeccC
Confidence 999987 44 66678888777 99998888889999999999999999999887333 2 2345688999999998
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---eEEEEeccCCc
Q 000681 1244 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPS 1320 (1354)
Q Consensus 1244 ~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~---~l~~i~~~h~~ 1320 (1354)
.+.+|+++...|.+++||+|..+.+...+.+|.++|.|+.|||++.+|||||.|+.|+||+.++. .+.++..
T Consensus 188 -~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---- 262 (839)
T KOG0269|consen 188 -YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---- 262 (839)
T ss_pred -CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee----
Confidence 79999999999999999999988889999999999999999999999999999999999997643 3333432
Q ss_pred cccccCCCeEEEEEecCCC-EEEEEEC--CCeEEEcC
Q 000681 1321 FMAQKIGSVNCLTFHPYQV-LLAAGSA--DACVSIHS 1354 (1354)
Q Consensus 1321 fl~~~~~~V~sLafspdg~-~Lasgs~--Dg~V~IWd 1354 (1354)
..+|.++.|-|... .||+++. |-.|+|||
T Consensus 263 -----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 263 -----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred -----cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 47899999999885 4676665 89999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=207.43 Aligned_cols=252 Identities=16% Similarity=0.221 Sum_probs=205.6
Q ss_pred CCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeC
Q 000681 1029 LNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL 1098 (1354)
Q Consensus 1029 ~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~ 1098 (1354)
....+.+|.+... +.|.++.-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|- ..|+++.| +.
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---Q~ITcL~f--s~ 133 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---QSITCLKF--SD 133 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---cceeEEEE--eC
Confidence 3347778887654 679999999999999999999999999999999999999999 89999999 68
Q ss_pred CCCEEEEEeCCCeEEEEEccCC--CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000681 1099 DVSLLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1176 (1354)
Q Consensus 1099 d~~~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~ 1176 (1354)
||.+|+|||.||.|.+|.+... ......+.+++.+.+|..+|+++ .+.+.+.+.++++++.|.++++||+..+. .
T Consensus 134 dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl--~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-L 210 (476)
T KOG0646|consen 134 DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL--QIGSGGTNARLYTASEDRTIKLWDLSLGV-L 210 (476)
T ss_pred CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE--EecCCCccceEEEecCCceEEEEEeccce-e
Confidence 9999999999999999998431 11111334557788999999883 34455567899999999999999999998 7
Q ss_pred eeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC------------eeeEeecCCCCCCC--CeEEEEEec
Q 000681 1177 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD------------MLVCSTRPHTQQVE--RVVGISFQP 1242 (1354)
Q Consensus 1177 v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~------------~~~~~~~~~~~h~~--~I~sv~fsp 1242 (1354)
+.++.. ...+.++ ..+|.+..+.+|+.+|.|.+.++..-. ........+.||.+ .|+|++++-
T Consensus 211 Llti~f--p~si~av-~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 211 LLTITF--PSSIKAV-ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred eEEEec--CCcceeE-EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 777765 3348999 778899999999999999998876432 11122234567777 999999999
Q ss_pred CCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEE
Q 000681 1243 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1243 ~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Las 1294 (1354)
+ |..|++|+.||+|+|||+.+. ++++++....++|+.+.+.|-.+-...
T Consensus 288 D--gtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 288 D--GTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred C--ccEEEeeCCCCCEEEEecchH-HHHHHHhhhccccceeEeeccccceec
Confidence 9 999999999999999999987 788888877899999999776554443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-18 Score=176.51 Aligned_cols=275 Identities=19% Similarity=0.319 Sum_probs=207.8
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCC-------------------------CCCeEEEEEcCCCCEEEEEECCCcEE
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRF-------------------------EKGTKTALLQPFSPIVVAADENERIK 1066 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~-------------------------~~~I~sL~fspdg~~Latgs~Dg~I~ 1066 (1354)
++...+.+.+...+++....+.++-.... ...|.|.+|+|+|.++++|+.|.+|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 55666777666666665555555432211 16799999999999999999999999
Q ss_pred EEECCCC--c---eEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCC
Q 000681 1067 IWNYEED--T---LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1139 (1354)
Q Consensus 1067 IWd~~tg--~---~l~~~~~h~~~~~~ItsL~f~~s~--d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1139 (1354)
+...+.. + .--.|.-|. +.|.+++|...+ .+.+|++++ -|..+||-..-..+. .++.+.+|++.
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhd---gtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~g~-----~~~a~sghtgh 185 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHD---GTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGRGQ-----GFHALSGHTGH 185 (350)
T ss_pred EEecccccccccCcceeeeecC---CceeeeEEecCCCcCceEEEecC-CCcceEEEeecCCCC-----cceeecCCccc
Confidence 9755432 1 123466677 899999997433 345666554 344445433221122 23568899988
Q ss_pred cccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC------CCCCeEEEEEEcCCCCEEEEEECCCeEEEE
Q 000681 1140 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTASQVHGGQLAAGFVDGSVRLY 1213 (1354)
Q Consensus 1140 V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~------~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIw 1213 (1354)
|.++ ..| ++-.+++|+.|.+|+.||++-.. ++.++... ..+.|.++ +..|.|+++++|-.|.+..+|
T Consensus 186 ilal---ysw--n~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav-~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 186 ILAL---YSW--NGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAV-AVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred EEEE---EEe--cCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEE-EECCCcceeeeccCCCceEEE
Confidence 8762 566 46778888899999999999988 88877531 23458888 778999999999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC---CccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---KDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~---~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|+|.+. +++.+. .|...|.++.|+|. ..++++++.|..|++-|+... .-++.....|+..+..+.|||..-
T Consensus 259 dirg~r-~iq~f~---phsadir~vrfsp~--a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~ 332 (350)
T KOG0641|consen 259 DIRGGR-MIQRFH---PHSADIRCVRFSPG--AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF 332 (350)
T ss_pred EeeCCc-eeeeeC---CCccceeEEEeCCC--ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence 999888 566554 45699999999999 999999999999999998753 135566678999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000681 1291 IIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~~g 1308 (1354)
-+++.+.|.++.+|.+.|
T Consensus 333 sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 333 SFISSSADKTATLWALNG 350 (350)
T ss_pred eeeeccCcceEEEeccCC
Confidence 999999999999997653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=198.58 Aligned_cols=263 Identities=18% Similarity=0.231 Sum_probs=216.3
Q ss_pred ceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEE
Q 000681 1022 FDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~Its 1091 (1354)
..+++++.|....++|...+ ..|+.+.||++...+++++.|..|+||.............|. .+|+.
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~---~~V~~ 308 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE---EPVTG 308 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc---cccee
Confidence 34677888888899998875 669999999999999999999999999998877777788888 89999
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECC
Q 000681 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1171 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~ 1171 (1354)
+.. .+.|.||+++++||+....|+.+ +....+- .-....-.+++ .+|+|+|..+.+|..||.|+|||+.
T Consensus 309 ls~--h~tgeYllsAs~d~~w~Fsd~~~--g~~lt~v---s~~~s~v~~ts----~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 309 LSL--HPTGEYLLSASNDGTWAFSDISS--GSQLTVV---SDETSDVEYTS----AAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred eee--ccCCcEEEEecCCceEEEEEccC--CcEEEEE---eeccccceeEE----eeEcCCceEEeccCCCceEEEEEcC
Confidence 998 68999999999999999999876 4433320 01111223444 8999999999999999999999999
Q ss_pred CCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000681 1172 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1251 (1354)
Q Consensus 1172 t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las 1251 (1354)
... .+..|++|... |++| .|+.+|.++++++.||.|++||+|..+ ..+.+.... ...+.++.|... |.+|+.
T Consensus 378 s~~-~~a~Fpght~~-vk~i-~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~--~~~v~s~~fD~S--Gt~L~~ 449 (506)
T KOG0289|consen 378 SQT-NVAKFPGHTGP-VKAI-SFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDE--KKEVNSLSFDQS--GTYLGI 449 (506)
T ss_pred Ccc-ccccCCCCCCc-eeEE-EeccCceEEEEEecCCeEEEEEehhhc-ccceeeccc--cccceeEEEcCC--CCeEEe
Confidence 998 89999997665 9999 788999999999999999999999877 444442221 247999999998 999999
Q ss_pred EECCCcEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1252 ASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1252 gs~DG~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
++.|=+|++++-.+.. ..+..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 450 ~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9888777777743321 566777788889999999999999999999999998864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=191.05 Aligned_cols=250 Identities=17% Similarity=0.226 Sum_probs=189.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec--CCCeEEEEECCCe
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QSGYLYASGEVSS 1164 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp--~~~~Lla~g~Dg~ 1164 (1354)
..|.++.. +-.|..|+|++.|++|||+.+..+.. ..+. ..+.+|.++|.. +.|-. .|+.|++++.||.
T Consensus 12 D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~-s~ll---~~L~Gh~GPVwq----v~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 12 DMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ-SKLL---AELTGHSGPVWK----VAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC-ceee---eEecCCCCCeeE----EeecccccCcEeeEeecCce
Confidence 66776666 45799999999999999999977333 2333 568999999998 78854 5778888899999
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeEEEEEEcCC--CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1165 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1165 I~VWDl~t~~-~~v~~i~~~~~~~Vtsl~~~s~~--g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
|.||.-++++ ........|..+ |++|+ +.|+ |-.|++++.||.|.|.+.+... .....+....|.-.|++++|.
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~S-VNsV~-wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSAS-VNSVA-WAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred EEEEecCCCchhhhhhhhhhccc-ceeec-ccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccccccceeeec
Confidence 9999988765 123444556555 99994 4444 5688999999999999998662 122222345678999999999
Q ss_pred cCC-CC-----------CEEEEEECCCcEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEE
Q 000681 1242 PGL-DP-----------AKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHA----PIIASGSAKQLIKVF 1304 (1354)
Q Consensus 1242 p~~-~g-----------~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg----~~Lasgs~Dg~I~Iw 1304 (1354)
|.. .| +.|++|+.|..|+||+..++. ..-.++.+|.+.|+.++|.|.- ..||++|.||+|.||
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 861 11 569999999999999998753 2334589999999999999964 389999999999999
Q ss_pred eCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1305 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1305 d~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
..+.+ ....+. ..+..-...+..+.|+..|..|++++.|+.|.+|
T Consensus 239 t~~~e-~e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 239 TKDEE-YEPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred EecCc-cCcccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 85522 111111 0011123679999999999999999999999999
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=210.07 Aligned_cols=274 Identities=13% Similarity=0.192 Sum_probs=213.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
.+-+.|+|.|+|..|++++.||.|++|+.... +.-.++..+. ..|.+++. ++.+|++|+.+++|.+|.....
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG---ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC---ceeEEEee----cccceEEeeccceEEEeeCCCC
Confidence 46789999999999999999999999987655 3333344344 57777776 6779999999999999998663
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
...-+ +...+.++++ ++++-+|..+++||+|-.|++-++.... ....+++|... |.++ .+.|.+++
T Consensus 87 --~~~~i-----L~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~ap-Vl~l-~~~p~~~f 152 (933)
T KOG1274|consen 87 --EEDTI-----LARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAP-VLQL-SYDPKGNF 152 (933)
T ss_pred --Cccce-----eeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCc-eeee-eEcCCCCE
Confidence 22211 3344566676 8888899999999999999999999988 78888887665 9999 67889999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCC-----CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ-----QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~-----h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~ 1275 (1354)
|++.+.||.|++||+.++. +...+..... ....+..++|+|+ +..++..+.|+.|++|+..+. +....+..
T Consensus 153 LAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk--~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~ 228 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPK--GGTLAVPPVDNTVKVYSRKGW-ELQFKLRD 228 (933)
T ss_pred EEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCC--CCeEEeeccCCeEEEEccCCc-eeheeecc
Confidence 9999999999999999876 3333322111 1345778999999 888888889999999999887 56666653
Q ss_pred --CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000681 1276 --HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1351 (1354)
Q Consensus 1276 --h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~ 1351 (1354)
+...+++++|+|+|+|||+++.||.|.|||.+.... |. ....|.+++|.|+...+-.-..-|...
T Consensus 229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~-----~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE-----FKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc-----ccceeEEEecCCCCCeeEEEeeccccc
Confidence 344599999999999999999999999999875222 32 236799999999997665554444443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=189.31 Aligned_cols=259 Identities=13% Similarity=0.230 Sum_probs=203.0
Q ss_pred EEEEECCCcEEEEECCCC------------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCc
Q 000681 1056 VVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1123 (1354)
Q Consensus 1056 Latgs~Dg~I~IWd~~tg------------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~ 1123 (1354)
+++|+....|.=+++... ..+..+..|. +.|++++. ++.++++||.|-+|+|||+.....-
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~---~sitavAV----s~~~~aSGssDetI~IYDm~k~~ql 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA---GSITALAV----SGPYVASGSSDETIHIYDMRKRKQL 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccc---cceeEEEe----cceeEeccCCCCcEEEEeccchhhh
Confidence 566666666655544311 2355677888 89999998 8999999999999999999662111
Q ss_pred ceEEeeeecccCCCCCcccceeEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1124 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1124 ~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~--~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
..+-.|.+.|++ +.|.+... .|++|++||.|.+|+..... ++.+++.|... |+.+ ...|.|++-
T Consensus 77 -------g~ll~Hagsita----L~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~-Vt~l-siHPS~KLA 142 (362)
T KOG0294|consen 77 -------GILLSHAGSITA----LKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQ-VTDL-SIHPSGKLA 142 (362)
T ss_pred -------cceeccccceEE----EEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccccc-ccee-EecCCCceE
Confidence 345678888888 67766654 89999999999999999998 99999999888 9999 778999999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1281 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt 1281 (1354)
++.+.|+.++.||+-.++..... .+. ..-+.+.|+|. |.+++.++.+ .|-+|.+.+. .....+.. ...+.
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a~v~--~L~---~~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVAFVL--NLK---NKATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-SVFREIEN-PKRIL 212 (362)
T ss_pred EEEcCCceeeeehhhcCccceee--ccC---CcceeeEEcCC--CCEEEEEecc-EEEEEecccH-hHhhhhhc-cccce
Confidence 99999999999999888743222 221 33445999998 9988888876 5889998876 34433332 24466
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEE--ecCCCEEEEEECCCeEEEcC
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF--HPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLaf--spdg~~Lasgs~Dg~V~IWd 1354 (1354)
|+.|- ++..+++|+.|+.|++||.+ +..+..+.. |+ .+|-++.+ .|++.+|+++++||.|+|||
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~-------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-HE-------NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCccceeeec-ch-------hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 77765 56789999999999999966 777788887 76 78888884 57789999999999999997
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=188.85 Aligned_cols=255 Identities=15% Similarity=0.253 Sum_probs=195.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1117 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl 1117 (1354)
.+-|..+...-.|+.|||++.|++|+|+....+ +.+.++.+|. ++|..+.|.+..-|.+|++++.||.|.||+-
T Consensus 11 ~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 356777778888999999999999999998754 5688899999 9999999976668999999999999999997
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecC--CCeEEEEECCCeEEEEECCCC-ceeeeee-cCCCCCCeEEEEE
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKE-QQMVNPI-PSSSDCSISALTA 1193 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~--~~~Lla~g~Dg~I~VWDl~t~-~~~v~~i-~~~~~~~Vtsl~~ 1193 (1354)
..+ ... .......|...|++ ++|-|. +-.|++++.||.|.|.+.+.. ......+ ..|.- .|+++++
T Consensus 88 ~~g--~w~---k~~e~~~h~~SVNs----V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-GvnsVsw 157 (299)
T KOG1332|consen 88 ENG--RWT---KAYEHAAHSASVNS----VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVNSVSW 157 (299)
T ss_pred CCC--chh---hhhhhhhhccccee----ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccceeee
Confidence 652 221 11336778999998 666554 556777889999999998765 2123333 34444 4899954
Q ss_pred EcC--CC-----------CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcE
Q 000681 1194 SQV--HG-----------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDI 1258 (1354)
Q Consensus 1194 ~s~--~g-----------~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~--~~g~~Lasgs~DG~I 1258 (1354)
.+. .| +.|++|+.|..|+||+..++. - ..-+.+.+|..+|+.++|.|. ....+|++++.||+|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-w-~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-W-KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-h-hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 332 13 579999999999999998763 1 112246789999999999997 234689999999999
Q ss_pred EEEeCCCCCcc--EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CCCce
Q 000681 1259 QFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQ 1310 (1354)
Q Consensus 1259 ~IWDl~~~~~~--v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd--~~g~~ 1310 (1354)
.||..+...++ ...+......+..+.|+..|++|+.++.|+.|.+|. .+|+-
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 99988743212 222333467899999999999999999999999998 45543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-19 Score=198.59 Aligned_cols=249 Identities=19% Similarity=0.349 Sum_probs=193.0
Q ss_pred EEEEEEee-----CCCCEEEEEeCCCeEEEEEccCCCCcc-eEE-------------eeeecccCCCCCcccceeEEEEe
Q 000681 1090 SKLCLVNE-----LDVSLLLVASCNGNIRIWKDYDQKDKQ-KLV-------------TAFSSIQGHKPGVRCSNVVVDWQ 1150 (1354)
Q Consensus 1090 tsL~f~~s-----~d~~~L~tgs~DG~IrIWdl~~~~~~~-~lv-------------s~~~~l~~h~~~V~si~~~v~~s 1150 (1354)
.|+.|++- ..|++++.|+.|..|.|||+.-.+... .+. ..-....+|+..|.. +.|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~----Ls~n 252 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA----LSWN 252 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH----HHhc
Confidence 46666532 246799999999999999984311000 000 000112356666666 7777
Q ss_pred cCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC
Q 000681 1151 QQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1229 (1354)
Q Consensus 1151 p~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~ 1229 (1354)
..-. .|++||.|.+|++||+.+++ +..++..|.+ .|.++.|++..+..+++|+.||+|.++|.|........++..
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~- 329 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD- 329 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCC-cceehhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-
Confidence 6544 45666799999999999999 8888885544 599999988899999999999999999999655444445322
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 000681 1230 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1230 ~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~g 1308 (1354)
+.|-.++|.|. ....+++++.||+|+-+|+|+.++++.++++|.++|++++++...+ ++++++.|+.|++|++.+
T Consensus 330 ---g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 330 ---GEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ---cceEEEEecCC-CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 78999999998 6788999999999999999998889999999999999999998766 789999999999999887
Q ss_pred ceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000681 1309 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1309 ~~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IWd 1354 (1354)
..-..... |.-- .+...|.++.|+- ..||.|+..+.++|||
T Consensus 406 ~~~~~v~~-~~~~----~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 406 DSPKSVKE-HSFK----LGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred CCCccccc-cccc----ccceeecccCCCcceEEEecCccceEEEee
Confidence 66666655 5422 2457888888887 5678888888999997
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=189.93 Aligned_cols=303 Identities=18% Similarity=0.242 Sum_probs=235.4
Q ss_pred hhhheeecCCCCceEEEeeCCCcEEEEeCCCC--------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce
Q 000681 1010 EHIAKCQRSCNSFDLAVSKLNNPIACWDTRFE--------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTL 1075 (1354)
Q Consensus 1010 e~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~--------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~ 1075 (1354)
|.+..+.+.+....+++.-..+.+..|+.+.+ +.|.|++|.++|+ ++||+.+|+|.||+..+.+.
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE
Confidence 44667778887777777777889999999876 5699999999986 56999999999999988888
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCe
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~ 1155 (1354)
.+....|. +.|.+++.. .+ ..|++|+.|..|..||-.- .+..- ..+++..+.++. +. +.++-
T Consensus 280 ~k~~~aH~---ggv~~L~~l--r~-GtllSGgKDRki~~Wd~~y--~k~r~----~elPe~~G~iRt----v~--e~~~d 341 (626)
T KOG2106|consen 280 SKQVHAHD---GGVFSLCML--RD-GTLLSGGKDRKIILWDDNY--RKLRE----TELPEQFGPIRT----VA--EGKGD 341 (626)
T ss_pred EeEeeecC---CceEEEEEe--cC-ccEeecCccceEEeccccc--ccccc----ccCchhcCCeeE----Ee--cCCCc
Confidence 88888999 999999984 34 4566699999999999422 11111 124556666665 22 24444
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1156 Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
|++|...+.|.-=.++++- .....+|.+. ...+ +..++.+.+++++.|+.+++|+ ..+...... . ..+.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f--~~~v~gh~de-lwgl-a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~----~d~~ 410 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGF--TLTVQGHGDE-LWGL-ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-I----EDPA 410 (626)
T ss_pred EEEeeccceEEEeeecCCc--eEEEEecccc-eeeE-EcCCChhheeeccCcceEEEcc--CCceeEEEE-e----cCce
Confidence 8888877777777777665 3344556564 8888 6678889999999999999999 333222221 1 2679
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CCceEEE
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGT 1313 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~--~g~~l~~ 1313 (1354)
.++.|+|. | .++.|+..|...+.|..+. ..+. +.....+++++.|+|+|.+||.|+.|+.|+||.+ +|.....
T Consensus 411 ~~~~fhps--g-~va~Gt~~G~w~V~d~e~~-~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 411 ECADFHPS--G-VVAVGTATGRWFVLDTETQ-DLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred eEeeccCc--c-eEEEeeccceEEEEecccc-eeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 99999999 7 9999999999999999985 3444 4444889999999999999999999999999984 4666666
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1314 i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..- +. .++|+.+.|++|+++|.+.+.|-.|..|.
T Consensus 486 ~~k-~~------gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 486 VGK-CS------GSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eee-ec------CceeEEeeecCCCceEEeccCceEEEEEc
Confidence 655 43 38999999999999999999999998883
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=183.18 Aligned_cols=286 Identities=14% Similarity=0.235 Sum_probs=212.8
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCc----------eEEE-----eeCCCCCCCCeEEEEEEeeCCCCEE
Q 000681 1040 FEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT----------LLNS-----FDNHDFPDKGISKLCLVNELDVSLL 1103 (1354)
Q Consensus 1040 ~~~~I~sL~fsp-dg~~Latgs~Dg~I~IWd~~tg~----------~l~~-----~~~h~~~~~~ItsL~f~~s~d~~~L 1103 (1354)
.++.|+++...+ .|+++++|+.||.|.|||++... .+.. -.+|. -.|.++.|.| -|..++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk---y~iss~~WyP-~DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK---YAISSAIWYP-IDTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce---eeeeeeEEee-ecCcee
Confidence 458899999988 67899999999999999997542 1111 12344 6799999975 688899
Q ss_pred EEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecC---CCeEEEEECCCeEEEEECCCCceeeeee
Q 000681 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQQMVNPI 1180 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~---~~~Lla~g~Dg~I~VWDl~t~~~~v~~i 1180 (1354)
.+++.|.+++|||..+.+.... -.....|++ -+|+|- ...+++|..|-.|++.|+.++. +-+++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~--------F~me~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVD--------FKMEGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTL 184 (397)
T ss_pred ecccccceEEEeecccceeeEE--------eecCceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeee
Confidence 9999999999999976322211 123344554 445543 2345555678899999999999 99999
Q ss_pred cCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee-----------cCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1181 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST-----------RPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1181 ~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~-----------~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
.+|.+. |.++.|.+...-.|++|+.||.||+||+|........+ +....|.+.+..++|..+ +.++
T Consensus 185 sGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd--~~~l 261 (397)
T KOG4283|consen 185 SGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD--ARYL 261 (397)
T ss_pred ccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc--chhh
Confidence 999888 99997666666778999999999999999653222222 223468899999999999 9999
Q ss_pred EEEECCCcEEEEeCCCCCccEEEEe--cCCCCeEEEEE---cCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCcccc
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAV---HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMA 1323 (1354)
Q Consensus 1250 asgs~DG~I~IWDl~~~~~~v~~l~--~h~~~VtsLaf---spdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~ 1323 (1354)
++.+.|..+++|+..++...+..+. .|+. -.++++ +-+...++---.++.+.+++ .+|..+..+.. |-
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-h~---- 335 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-HL---- 335 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec-cc----
Confidence 9999999999999988754433332 1211 112222 23334455445568899999 78999999988 53
Q ss_pred ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1324 QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1324 ~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..|.|.+|.|+-+.+.+|..|+.|..|.
T Consensus 336 ---k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 336 ---KRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred ---ceeeEEeecCchhhhhccccCCcccccc
Confidence 6899999999999999999999998883
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=187.29 Aligned_cols=289 Identities=12% Similarity=0.176 Sum_probs=200.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-eCCCeEEEEEcc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~--l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tg-s~DG~IrIWdl~ 1118 (1354)
..|++++|+.||++|++++.|++|+||++.+-.. -+.+... .+.+.-+.+.| .+|..-+++. -...++++|.+.
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVF--APDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEE--CCCcceEEEEEccCCEEEEEEee
Confidence 7899999999999999999999999999876321 1111111 11235678899 5676655544 455679999874
Q ss_pred CCC-CcceEE-eeee---cccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1119 DQK-DKQKLV-TAFS---SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1119 ~~~-~~~~lv-s~~~---~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
..+ |..... ..+. .-..|...+.+++ .-..+.+|++++.|..|.+||++ ++ .+..+...... ...+.
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG----iA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~--n~~aa 235 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIG----IAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSS--NYDAA 235 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEe----ecCCceEEEEecCCCcEEEEecC-Cc-eeeeecccccc--cccee
Confidence 421 211110 1111 1122333444422 22356678888999999999999 66 77777765444 23347
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCC-----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC--
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTP-----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-- 1266 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwDlr~~-----~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~-- 1266 (1354)
.+|+|+++++++-.-.|++|.+--. +...+.+ .+.||...|..++|+++ ...+++.|.||+++|||++-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCC--cceeEEEecCCcEEEeeccceEe
Confidence 8999999999999999999997522 2234444 67799999999999999 999999999999999997521
Q ss_pred --C--ccEEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1267 --K--DAYLTI----DAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1267 --~--~~v~~l----~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
. ..+++. ..-.+.-..++.+|.|..||.+.. ..+++|. -+|+...+++.. |.+.|++++|+++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~-------h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDI-------HSTTISSISYSSD 384 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHh-------hcCceeeEEecCC
Confidence 0 112222 111233448999999999987653 5799998 457666655542 4489999999999
Q ss_pred CCEEEEEECCCeEEEc
Q 000681 1338 QVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1338 g~~Lasgs~Dg~V~IW 1353 (1354)
|+++|+++ |..+++.
T Consensus 385 g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 385 GKYIATCG-DRYVRVI 399 (420)
T ss_pred CcEEeeec-ceeeeee
Confidence 99999997 6677764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=205.03 Aligned_cols=248 Identities=17% Similarity=0.289 Sum_probs=200.3
Q ss_pred eEEEeeCCCcEEEEeCCCC------------CCeEE-EEEcC-CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCC
Q 000681 1023 DLAVSKLNNPIACWDTRFE------------KGTKT-ALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG 1088 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~------------~~I~s-L~fsp-dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ 1088 (1354)
.++.++-|+++++|+-+.+ ..|.. +++-+ ++-.+++|+.|++|.+|.......+..+++|. ..
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~---sn 103 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK---SN 103 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc---cc
Confidence 3556666889999998654 22333 66665 44479999999999999999999999999999 89
Q ss_pred eEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEE
Q 000681 1089 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168 (1354)
Q Consensus 1089 ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VW 1168 (1354)
|.++.. ..++. +++||.|.+++||.... .. ..+.+|...|+. +..-|++ .+++|+.|++|++|
T Consensus 104 VC~ls~--~~~~~-~iSgSWD~TakvW~~~~----l~-----~~l~gH~asVWA----v~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 104 VCSLSI--GEDGT-LISGSWDSTAKVWRIGE----LV-----YSLQGHTASVWA----VASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred eeeeec--CCcCc-eEecccccceEEecchh----hh-----cccCCcchheee----eeecCCC-cEEeccCcceeeec
Confidence 999986 23444 99999999999999733 22 237899999998 5555555 99999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000681 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1169 Dl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~ 1248 (1354)
.- ++ +++++.+|.+. |.+++.. ++..|++++.||.|++||+ +++.+. .+.+|..-|.++....+ +..
T Consensus 167 k~--~~-~l~tf~gHtD~-VRgL~vl--~~~~flScsNDg~Ir~w~~-~ge~l~----~~~ghtn~vYsis~~~~--~~~ 233 (745)
T KOG0301|consen 167 KG--GT-LLKTFSGHTDC-VRGLAVL--DDSHFLSCSNDGSIRLWDL-DGEVLL----EMHGHTNFVYSISMALS--DGL 233 (745)
T ss_pred cC--Cc-hhhhhccchhh-eeeeEEe--cCCCeEeecCCceEEEEec-cCceee----eeeccceEEEEEEecCC--CCe
Confidence 86 55 78999998776 9999665 3557999999999999999 555333 33478899999997777 889
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
++++++|++++||+.. ++.+.+.-....|+++.+-++|. |++|++||.|+||..+
T Consensus 234 Ivs~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9999999999999976 57777776566899999988886 5677889999999854
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=199.46 Aligned_cols=253 Identities=15% Similarity=0.218 Sum_probs=195.4
Q ss_pred ceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEE
Q 000681 1022 FDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~Its 1091 (1354)
..+++++.||.|++||.... +.|+.|+++. ..++++++|.+|+.|.++ +..++++.+.. .+.+
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s----~~~g 152 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKS----VYLG 152 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeeccc----cccc
Confidence 35778899999999999863 5788999988 567788889999999987 45677776654 5666
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE-ECCCeEEEEEC
Q 000681 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDL 1170 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~-g~Dg~I~VWDl 1170 (1354)
+.- ...+..++|+|.+ |.|||.+...-. +.+.--...+.+ +.|+|....++++ +.|+.|.+||+
T Consensus 153 Idh--~~~~~~FaTcGe~--i~IWD~~R~~Pv-------~smswG~Dti~s----vkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 153 IDH--HRKNSVFATCGEQ--IDIWDEQRDNPV-------SSMSWGADSISS----VKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred ccc--ccccccccccCce--eeecccccCCcc-------ceeecCCCceeE----EecCCCcchheeeeccCCceEEEec
Confidence 665 3466788888765 999998552211 223323344455 8899987776666 59999999999
Q ss_pred CCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE
Q 000681 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1250 (1354)
Q Consensus 1171 ~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~La 1250 (1354)
++.. +++.+..... -+.| +|+|++-.|++|..|..++.||+|.-+..+. .+.+|.+.|.+++|+|. |..|+
T Consensus 218 R~~~-Pl~KVi~~mR--TN~I-swnPeafnF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfspt--G~Efv 288 (433)
T KOG0268|consen 218 RQAS-PLKKVILTMR--TNTI-CWNPEAFNFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPT--GQEFV 288 (433)
T ss_pred ccCC-ccceeeeecc--ccce-ecCccccceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCC--cchhc
Confidence 9998 7766554322 3667 6777889999999999999999998765554 56678899999999999 99999
Q ss_pred EEECCCcEEEEeCCCCCccEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1251 SASQAGDIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1251 sgs~DG~I~IWDl~~~~~~v~~l~~-h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
+||.|.+|+||..+.+. .-..+.. --..|.|+.|+-|.+++++||.|+.|++|.-
T Consensus 289 sgsyDksIRIf~~~~~~-SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGH-SRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cccccceEEEeecCCCc-chhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 99999999999998762 2211111 1246999999999999999999999999983
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=201.42 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=219.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
+.|.+|..+|.|..|++|+.||+|+||.+.+|.+++++.... .|.+++|.+..+-..|+++-.+. +-|-+..-+.
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~ 475 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGD 475 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecCc-eEEeCccccc
Confidence 679999999999999999999999999999999999988655 89999996555555666665444 4444321100
Q ss_pred C-----cceE-------------Eeee------------ecccCCCCCcccceeEEEEecCCCeEEEEE---CCCeEEEE
Q 000681 1122 D-----KQKL-------------VTAF------------SSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLW 1168 (1354)
Q Consensus 1122 ~-----~~~l-------------vs~~------------~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~Dg~I~VW 1168 (1354)
. ..++ +..| +..-.|...|+. +.|+..|.+|++.. ....|.|+
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~----vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ----VTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce----eeeecCCceEEEeccCCCcceEEEE
Confidence 0 0000 0011 112235566666 99999999999884 34679999
Q ss_pred ECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000681 1169 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1169 Dl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~ 1248 (1354)
++.... ...-++...+. |.++ .|++...+|++++. ..|++||+.... +++...+. ..+|.+++++|. |..
T Consensus 552 QLSK~~-sQ~PF~kskG~-vq~v-~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg---~kwiS~msihp~--GDn 621 (733)
T KOG0650|consen 552 QLSKRK-SQSPFRKSKGL-VQRV-KFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTG---SKWISSMSIHPN--GDN 621 (733)
T ss_pred eccccc-ccCchhhcCCc-eeEE-EecCCCceEEEEec-cceEEEehhHHH-HHHHHhcC---CeeeeeeeecCC--CCe
Confidence 998877 45555444444 8888 56667667766664 579999998755 44443333 378999999999 999
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CC-----Cc---eEEEEeccC
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LE-----GE---QLGTIRYHH 1318 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd--~~-----g~---~l~~i~~~h 1318 (1354)
|+.|+.|+.+..||+.-...+.++++.|...+++++||+.-+++|+|+.||++.||. +. +. ++..+++ |
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g-H 700 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG-H 700 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC-c
Confidence 999999999999999877779999999999999999999999999999999999986 21 21 3455666 5
Q ss_pred CccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1319 PSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1319 ~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.. .....|..+.|||...+|.+++.||+|++|.
T Consensus 701 ~~---~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 701 EK---TNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ee---ecccceEeecccCCCceEEecCCCceEEeeC
Confidence 42 1234588999999999999999999999994
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=195.83 Aligned_cols=293 Identities=18% Similarity=0.220 Sum_probs=226.7
Q ss_pred cEEEEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce-EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000681 1032 PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110 (1354)
Q Consensus 1032 ~I~iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~-l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG 1110 (1354)
.++..|++ ...|.+|+|+...+.||++-.+|+|.||++..+-. ...+.++ ....|.+++|. ++..|++.+.+|
T Consensus 17 rcrf~d~~-Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~--~drsIE~L~W~---e~~RLFS~g~sg 90 (691)
T KOG2048|consen 17 RCRFVDYK-PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP--EDRSIESLAWA---EGGRLFSSGLSG 90 (691)
T ss_pred EEEEEeee-ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC--CCCceeeEEEc---cCCeEEeecCCc
Confidence 34555654 47899999999999999999999999999987633 3344553 45799999993 788999999999
Q ss_pred eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCCCCCeE
Q 000681 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSIS 1189 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i-~~~~~~~Vt 1189 (1354)
.|.-||+.+ .++... +......|++ ++-+|.+..+++|++||.+..++...+. ..... -....+.|.
T Consensus 91 ~i~EwDl~~--lk~~~~-----~d~~gg~IWs----iai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 91 SITEWDLHT--LKQKYN-----IDSNGGAIWS----IAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKSRVL 158 (691)
T ss_pred eEEEEeccc--CceeEE-----ecCCCcceeE----EEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccceEE
Confidence 999999977 443332 4556677887 8888999999999999988888888776 44332 233345699
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee---cCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000681 1190 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST---RPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1190 sl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~---~~~~-~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~ 1265 (1354)
++ .+++++..+++|+.||.|++||...+......- .... +...-|.++.+-.+ ..|++|...|+|++||...
T Consensus 159 sl-sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 159 SL-SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred EE-EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccC
Confidence 99 788999999999999999999999887543111 1111 13345778887754 6899999999999999999
Q ss_pred CCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1266 HKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1266 ~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
+ ..+..+..|.+.|.+++..+++..+.+++.|+.|.-|..++..-.-+.. +....|...|.+++..++ .|.+|+
T Consensus 235 g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~---~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 235 G-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN---SRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred c-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee---ccccCCcccceeeeeecc--eEEecc
Confidence 8 7999999999999999999999999999999999999855432211111 112234577999998877 899999
Q ss_pred CCCeEEE
Q 000681 1346 ADACVSI 1352 (1354)
Q Consensus 1346 ~Dg~V~I 1352 (1354)
.|.++.+
T Consensus 309 ~d~~l~i 315 (691)
T KOG2048|consen 309 RDFTLAI 315 (691)
T ss_pred eeeEEEE
Confidence 9988765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=185.85 Aligned_cols=245 Identities=18% Similarity=0.260 Sum_probs=186.9
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
-..+|...|++|.| ++.++.|++++.||++++||+....-+. .-.|..++.+ ++|. +...+++|+
T Consensus 8 l~npP~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~~--------~~~~~~plL~----c~F~-d~~~~~~G~ 72 (323)
T KOG1036|consen 8 LENPPEDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLKL--------KFKHGAPLLD----CAFA-DESTIVTGG 72 (323)
T ss_pred cCCCChhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhhh--------heecCCceee----eecc-CCceEEEec
Confidence 34456689999999 5788888888999999999996631111 2347777777 6665 478999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1240 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~f 1240 (1354)
-||.|+.+|+.++. ...+..|.. +|.|| ...+..+.+++|+.|++|++||.|... ....+ .....|.++..
T Consensus 73 ~dg~vr~~Dln~~~--~~~igth~~-~i~ci-~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~----d~~kkVy~~~v 143 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGN--EDQIGTHDE-GIRCI-EYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF----DQGKKVYCMDV 143 (323)
T ss_pred cCceEEEEEecCCc--ceeeccCCC-ceEEE-EeeccCCeEEEcccCccEEEEeccccc-ccccc----ccCceEEEEec
Confidence 99999999999987 445555544 49999 555677899999999999999999743 22222 12257888877
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----ceEEEE
Q 000681 1241 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTI 1314 (1354)
Q Consensus 1241 sp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~-~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-----~~l~~i 1314 (1354)
. ++.|++|+.|..|.+||+|+...+.+... .-+-.+.|+++-|++.=++++|-||.|.+=.++. ..-..|
T Consensus 144 ~----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 144 S----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred c----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 4 77999999999999999998754442221 2245789999999888899999999998865442 334567
Q ss_pred eccCCcccc--ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1315 RYHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1315 ~~~h~~fl~--~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+. |..... .-.-+|++++|||-...||||+.||.|.+||
T Consensus 220 kC-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 220 KC-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred Ee-eecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 77 653322 1235899999999999999999999999997
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=188.03 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=190.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEeCCCeEEEEEccCCCCcceEEeeee
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFS 1131 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L-~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1131 (1354)
+..+++++.|+.|++||..+++.+..+..+. .+.++.| ++++..+ ++++.++.|++||..+ ++. . .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~--~~~--~---~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITL--SKDGKLLYVCASDSDTIQVIDLAT--GEV--I---G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEE--CCCCCEEEEEECCCCeEEEEECCC--CcE--E---E
Confidence 3578899999999999999999988888665 4667888 6788876 5667889999999865 222 1 1
Q ss_pred cccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC-e
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-S 1209 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG-s 1209 (1354)
.+..+.. +.. +.|+++++.+++++ .++.|++||+++.+ .+..+..+. .+.++ .++++|+.++++..++ .
T Consensus 68 ~~~~~~~-~~~----~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~-~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 68 TLPSGPD-PEL----FALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGM-AVSPDGKIVVNTSETTNM 138 (300)
T ss_pred eccCCCC-ccE----EEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceE-EECCCCCEEEEEecCCCe
Confidence 1222222 233 78999999887764 68999999999887 777776432 25777 6788999999988875 4
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE-EECCCcEEEEeCCCCCccEEEEecCC-----C--CeE
Q 000681 1210 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-ASQAGDIQFLDIRNHKDAYLTIDAHR-----G--SLS 1281 (1354)
Q Consensus 1210 VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las-gs~DG~I~IWDl~~~~~~v~~l~~h~-----~--~Vt 1281 (1354)
+.+||.++.+...... . ...+..+.|+|+ +..++. +..+|.|++||++++ +.+..+..+. . ...
T Consensus 139 ~~~~d~~~~~~~~~~~-~----~~~~~~~~~s~d--g~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVL-V----DQRPRFAEFTAD--GKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred EEEEeCCCCeEEEEEE-c----CCCccEEEECCC--CCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCcc
Confidence 6778988776332221 1 134678999999 777754 456999999999987 4555554321 1 234
Q ss_pred EEEEcCCCCEEEE-EeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE-CCCeEEEcC
Q 000681 1282 ALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIHS 1354 (1354)
Q Consensus 1282 sLafspdg~~Las-gs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs-~Dg~V~IWd 1354 (1354)
.++|+|++++++. .+.++.|.+||.. ++.+..+.. . ..+.+++|+|+|.+|++++ .+|.|.|||
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--G-------QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--C-------CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 6889999997544 4556789999965 444443322 1 4688999999999998864 589999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=195.87 Aligned_cols=268 Identities=17% Similarity=0.235 Sum_probs=213.3
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEe
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1079 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~ 1079 (1354)
|....++.....|+++..++.|.+|+...+ ..|.+++|. ++..|.+.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence 566677777778999999999999999986 779999999 5556777777999999999999998888
Q ss_pred eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE
Q 000681 1080 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1159 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~ 1159 (1354)
.... +.|.+++. .+.+..++.|++||.+..++... ++.+. -+.+...++.+.+ ++|++++..++.|
T Consensus 107 d~~g---g~IWsiai--~p~~~~l~IgcddGvl~~~s~~p--~~I~~---~r~l~rq~sRvLs----lsw~~~~~~i~~G 172 (691)
T KOG2048|consen 107 DSNG---GAIWSIAI--NPENTILAIGCDDGVLYDFSIGP--DKITY---KRSLMRQKSRVLS----LSWNPTGTKIAGG 172 (691)
T ss_pred cCCC---cceeEEEe--CCccceEEeecCCceEEEEecCC--ceEEE---EeecccccceEEE----EEecCCccEEEec
Confidence 7666 89999999 67889999999999777777644 33222 2445555566665 9999999999999
Q ss_pred ECCCeEEEEECCCCceeeeee-------cCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1160 GEVSSIMLWDLEKEQQMVNPI-------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1160 g~Dg~I~VWDl~t~~~~v~~i-------~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
+.||.|++||+.++. .+..+ .......|.++.+. ....+++|...|+|++||-..+. +.+ .+..|.
T Consensus 173 s~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gT-Liq---S~~~h~ 245 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGT-LIQ---SHSCHD 245 (691)
T ss_pred ccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcc-hhh---hhhhhh
Confidence 999999999999887 44421 22234457888555 45689999999999999998887 443 555677
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc---cEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD---AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~---~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+.|.+++..++ ++.+++++.|+.|..|...+.+. .......|...|.+++..++ .+++|+.|..+.+-.
T Consensus 246 adVl~Lav~~~--~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 246 ADVLALAVADN--EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred cceeEEEEcCC--CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 99999999998 99999999999999998776643 22334467888999999876 788888888777654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=195.10 Aligned_cols=266 Identities=18% Similarity=0.266 Sum_probs=200.2
Q ss_pred CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEEeeeecccCCCCCc
Q 000681 1062 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1140 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1140 (1354)
..++.+||+.+|..+.++++... ..-.++..+ ++.+++++.. -..|.+|.+.... +.+ ...-..+.|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~--a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~---~~~----q~~v~Pg~v 84 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYL--AQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKD---QVV----QYIVLPGPV 84 (476)
T ss_pred CcceeEEecCCCceeEEecCccc--ccchhhhhh---chhheeeecccCccccccccCchh---hhh----hhcccccce
Confidence 35699999999999999988731 122233332 3466766654 4578999985411 111 011123445
Q ss_pred ccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCC--
Q 000681 1141 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP-- 1218 (1354)
Q Consensus 1141 ~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~-- 1218 (1354)
.+ +.-++.|.++++|+..|.|++|.+.++. .+..+.+|... |+++ .++.+|.+|++|+.||.|.+|++..-
T Consensus 85 ~a----l~s~n~G~~l~ag~i~g~lYlWelssG~-LL~v~~aHYQ~-ITcL-~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 85 HA----LASSNLGYFLLAGTISGNLYLWELSSGI-LLNVLSAHYQS-ITCL-KFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ee----eecCCCceEEEeecccCcEEEEEecccc-HHHHHHhhccc-eeEE-EEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 55 6777788888887799999999999999 99999888877 9999 77889999999999999999987521
Q ss_pred ---CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000681 1219 ---DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1219 ---~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg 1295 (1354)
......+..+.+|.-.|+.+...+.+...+++|+|.|.++++||+..+ ..+.++. ....+.+++++|-+..+.+|
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~-fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT-FPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe-cCCcceeEEEcccccEEEec
Confidence 111222234567889999999987644678999999999999999998 5666665 45689999999999999999
Q ss_pred eCCCcEEEEeCCCc-----------------eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1296 SAKQLIKVFSLEGE-----------------QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1296 s~Dg~I~Iwd~~g~-----------------~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.+|.|.+.++.+. .+..+.+ |. ....|+|++.+-||.+|++|+.||.|.|||
T Consensus 236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~-----~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HE-----NESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred CCcceEEeeehhcCCcccccccccccccccceeeeecc-cc-----CCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999998874321 2222333 32 124999999999999999999999999997
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=180.13 Aligned_cols=268 Identities=12% Similarity=0.237 Sum_probs=196.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEE
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1116 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg----~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWd 1116 (1354)
..-|+++.|.+.|+++|+++.|++|+|||..+. .+...++.|. +.|..+.|....-|+.+++++.|++++||.
T Consensus 13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD---GSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC---CcEEEEEecCccccceEEEEecCCceeeee
Confidence 356999999999999999999999999996433 5667788999 999999998767899999999999999998
Q ss_pred ccCC--CCcceEEeeeecccCCCCCcccceeEEEEecC--CCeEEEEECCCeEEEEECCCCc-----eeeeeec------
Q 000681 1117 DYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQ-----QMVNPIP------ 1181 (1354)
Q Consensus 1117 l~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~--~~~Lla~g~Dg~I~VWDl~t~~-----~~v~~i~------ 1181 (1354)
-... +....--....++.+....|.+ +.|.|. |-.+++++.||.||||+.-... .....++
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~D----V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTD----VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeE----EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 6321 1111111122446667777777 777664 5677888999999999865432 0222232
Q ss_pred CCCCCCeEEEEEEcC--CCCEEEEEECC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC--CCCEEEEE
Q 000681 1182 SSSDCSISALTASQV--HGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL--DPAKIVSA 1252 (1354)
Q Consensus 1182 ~~~~~~Vtsl~~~s~--~g~~L~sgs~D-----GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~--~g~~Lasg 1252 (1354)
+....+..|+.+.+. ...+|++|+.+ +.++||....+.........+.+|..+|+.++|.|+. ....|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 222334677744321 23578888766 5789998776543333444666899999999999982 34579999
Q ss_pred ECCCcEEEEeCCCCC-------------------ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC----Cc
Q 000681 1253 SQAGDIQFLDIRNHK-------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----GE 1309 (1354)
Q Consensus 1253 s~DG~I~IWDl~~~~-------------------~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~----g~ 1309 (1354)
+.|| |+||.++... +.+..+..|++.|..+.|+-.|.+|++.|.||.|++|..+ -+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 9999 9999987311 3455677899999999999999999999999999999832 23
Q ss_pred eEEEEec
Q 000681 1310 QLGTIRY 1316 (1354)
Q Consensus 1310 ~l~~i~~ 1316 (1354)
++..++.
T Consensus 325 C~sv~~~ 331 (361)
T KOG2445|consen 325 CTSVLKA 331 (361)
T ss_pred eeeEEec
Confidence 4445544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-20 Score=216.60 Aligned_cols=257 Identities=17% Similarity=0.356 Sum_probs=214.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeee
Q 000681 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1130 (1354)
Q Consensus 1051 pdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1130 (1354)
|....++.+..+-.++||+.. .+..|. ..+.++.. -..++.+++|+.|..+.+|.+.. ...+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~------~~~~hs---aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~k----p~~i--- 63 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR------EFVAHS---AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGK----PNAI--- 63 (825)
T ss_pred Ccccccceeeeeeccccccch------hhhhhh---hhhceeee--eccceeeccCCCceeeccccccC----Cchh---
Confidence 444556666667778888865 244565 56677776 36788999999999999999843 2222
Q ss_pred ecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeE
Q 000681 1131 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1210 (1354)
Q Consensus 1131 ~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsV 1210 (1354)
-.+.+|..+|.+ +.|+.....|++|..+|+|++||++..+ .++++.+|... +.++ .|+|-+.+++.|+.|+.+
T Consensus 64 ~S~~~hespIeS----l~f~~~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~-~~sv-~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 64 TSLTGHESPIES----LTFDTSERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLN-ITSV-DFHPYGEFFASGSTDTDL 136 (825)
T ss_pred heeeccCCccee----eecCcchhhhcccccCCceeeeehhhhh-hhhhhhccccC-ccee-eeccceEEeccccccccc
Confidence 237899999999 8999999999999999999999999999 89999998877 8999 588999999999999999
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1211 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1211 rIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
++||+|... +...+ .+|...+..+.|+|+ |.++++|+.|..++|||...+ +....|..|.+.+..+.|||..-
T Consensus 137 ~iwD~Rk~G-c~~~~---~s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 137 KIWDIRKKG-CSHTY---KSHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred eehhhhccC-ceeee---cCCcceeEEEeecCC--CceeeccCCcceeeeeccccc-ccccccccccccccccccCchhh
Confidence 999999665 44443 357788999999999 999999999999999999988 68999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1291 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
++++||.|++|++||++ -+.+...+. . ...|.+++|+|+++.+++|..+
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~-~-------~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKP-E-------TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCC-c-------cCCceeeeecCCceeeecCchh
Confidence 99999999999999977 444554443 2 3679999999999999988654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=193.87 Aligned_cols=288 Identities=18% Similarity=0.263 Sum_probs=212.0
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCcEEEEECCC----CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1042 KGTKTALLQPFSP--IVVAADENERIKIWNYEE----DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg~--~Latgs~Dg~I~IWd~~t----g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
.+|++++|||..+ ++|+|+..|+|-+||+.+ ...+..+..|. .+|++|.|.+ .+...+++.+.||+||.-
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---GPVSGLKFSP-ANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---ccccceEecC-CChhheeeeccCceeeee
Confidence 6899999999765 888999999999999952 24456677777 8999999953 577889999999999999
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEc
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s 1195 (1354)
|++. ...+.+ -.+........+ ++++.+.+.++.++.-|...+||.++.......+..|.. .|++|++.+
T Consensus 263 D~~~--~i~e~v---~s~~~d~~~fs~----~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP 332 (498)
T KOG4328|consen 263 DFEG--NISEEV---LSLDTDNIWFSS----LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNP 332 (498)
T ss_pred eecc--hhhHHH---hhcCccceeeee----ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCC
Confidence 9966 222222 111112222223 778888899999998889999999987733555666666 599997777
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCC---CCCccEE
Q 000681 1196 VHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDAYL 1271 (1354)
Q Consensus 1196 ~~g~~L~sgs~DGsVrIwDlr~~~~~~~-~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~---~~~~~v~ 1271 (1354)
....++++++.|++++|||+|.-..-.. .+ ....|...|.++.|+|. +..|+|.+.|..|+|||.. ...++..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs--~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPS--GGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCC--CCceEeeccCCceEEeecccccccCCccc
Confidence 7788999999999999999995331111 12 22367899999999999 4459999999999999984 2224555
Q ss_pred EEecCCC------CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce-EEEEeccCCccccccCCCeEE-EEEecCCCEEEE
Q 000681 1272 TIDAHRG------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNC-LTFHPYQVLLAA 1343 (1354)
Q Consensus 1272 ~l~~h~~------~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~-l~~i~~~h~~fl~~~~~~V~s-Lafspdg~~Las 1343 (1354)
++. |.. ......|+|+..+|++|-.-..|-|||-+|++ +..+.. . ....|.+ ..|||.+..+++
T Consensus 410 ~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P------~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 410 TIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-P------ESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred eee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-c------cccccccceeecccccceec
Confidence 554 322 23456899999999999999999999976655 555533 1 1233444 489999986666
Q ss_pred EEC-CCeEEEcC
Q 000681 1344 GSA-DACVSIHS 1354 (1354)
Q Consensus 1344 gs~-Dg~V~IWd 1354 (1354)
|+. .|.|.||.
T Consensus 482 G~~s~Gki~vft 493 (498)
T KOG4328|consen 482 GGNSSGKIYVFT 493 (498)
T ss_pred cCCccceEEEEe
Confidence 654 78999883
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=183.28 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=195.9
Q ss_pred eEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEE
Q 000681 1023 DLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKL 1092 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~L-atgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL 1092 (1354)
.+++.+.++.+.+||..++ ..+.++.|+|+++.+ ++++.++.|++||..+++.+..+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----CccEE
Confidence 3566778889999998765 447789999999976 566778999999999998877776544 35567
Q ss_pred EEEeeCCCCEEEEE-eCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCC-eEEEEEC
Q 000681 1093 CLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDL 1170 (1354)
Q Consensus 1093 ~f~~s~d~~~L~tg-s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg-~I~VWDl 1170 (1354)
.| +++++.++++ +.++.|++||+.+ . +.+ ..+.. ...+.+ +.|++++..++++..++ .+.+||.
T Consensus 79 ~~--~~~g~~l~~~~~~~~~l~~~d~~~--~--~~~---~~~~~-~~~~~~----~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 79 AL--HPNGKILYIANEDDNLVTVIDIET--R--KVL---AEIPV-GVEPEG----MAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred EE--CCCCCEEEEEcCCCCeEEEEECCC--C--eEE---eEeeC-CCCcce----EEECCCCCEEEEEecCCCeEEEEeC
Confidence 77 6788877655 5689999999965 2 222 11221 122344 88999999998887654 5778899
Q ss_pred CCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCCeeeEeecCC--CCC--CCCeEEEEEecCCC
Q 000681 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--TQQ--VERVVGISFQPGLD 1245 (1354)
Q Consensus 1171 ~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sg-s~DGsVrIwDlr~~~~~~~~~~~~--~~h--~~~I~sv~fsp~~~ 1245 (1354)
++.+ .+..+.... .+.++ .++++++.++++ ..+|.|++||+++++. ...+... ..+ ......+.|+|+
T Consensus 145 ~~~~-~~~~~~~~~--~~~~~-~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~d-- 217 (300)
T TIGR03866 145 KTYE-IVDNVLVDQ--RPRFA-EFTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKD-- 217 (300)
T ss_pred CCCe-EEEEEEcCC--CccEE-EECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCC--
Confidence 8877 655544322 24666 667888887555 4699999999998763 3322111 001 123457889998
Q ss_pred CCEEEE-EECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCC-CceEEEEeccCCccc
Q 000681 1246 PAKIVS-ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLE-GEQLGTIRYHHPSFM 1322 (1354)
Q Consensus 1246 g~~Las-gs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg-s~Dg~I~Iwd~~-g~~l~~i~~~h~~fl 1322 (1354)
++.+++ .+.++.|.+||++++ +.+..+. +...+.+++|+|+|.+|+++ +.++.|++||.. ++.+..++. .
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~---- 290 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTY-EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-G---- 290 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCC-cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-c----
Confidence 777544 455678999999877 4554443 44578999999999998876 468999999954 566777765 2
Q ss_pred cccCCCeEEEEEec
Q 000681 1323 AQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1323 ~~~~~~V~sLafsp 1336 (1354)
...+.++|+|
T Consensus 291 ----~~~~~~~~~~ 300 (300)
T TIGR03866 291 ----RLPWGVVVRP 300 (300)
T ss_pred ----cccceeEeCC
Confidence 3458888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=186.02 Aligned_cols=283 Identities=18% Similarity=0.318 Sum_probs=214.4
Q ss_pred CCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE---eeCCCCCCCCeEEEEEEe
Q 000681 1030 NNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS---FDNHDFPDKGISKLCLVN 1096 (1354)
Q Consensus 1030 d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~---~~~h~~~~~~ItsL~f~~ 1096 (1354)
++.+.+||++.+ +.|....|||.++-|++....|.+..|++..+...++ |+.+. ..-|.+++|.
T Consensus 179 ~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~- 255 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFL- 255 (626)
T ss_pred ccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc--ceEEEEEEEc-
Confidence 347889999875 5577889999887666666699999999998865544 55554 2679999993
Q ss_pred eCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000681 1097 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1176 (1354)
Q Consensus 1097 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~ 1176 (1354)
.+.-++||.++|.|.||+... ..+. +....|...|.++++. .++.|++|+.|+.|..||-.-.+..
T Consensus 256 --engdviTgDS~G~i~Iw~~~~----~~~~---k~~~aH~ggv~~L~~l-----r~GtllSGgKDRki~~Wd~~y~k~r 321 (626)
T KOG2106|consen 256 --ENGDVITGDSGGNILIWSKGT----NRIS---KQVHAHDGGVFSLCML-----RDGTLLSGGKDRKIILWDDNYRKLR 321 (626)
T ss_pred --CCCCEEeecCCceEEEEeCCC----ceEE---eEeeecCCceEEEEEe-----cCccEeecCccceEEeccccccccc
Confidence 455678999999999999733 3333 2334899999985543 6788888999999999993322201
Q ss_pred eeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000681 1177 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256 (1354)
Q Consensus 1177 v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG 1256 (1354)
..+++...+ .|..+ .- ..+. |+.|...+.|-.=.+.++-.+. ..+|......++.+|. .+.+++++.|+
T Consensus 322 ~~elPe~~G-~iRtv-~e-~~~d-i~vGTtrN~iL~Gt~~~~f~~~-----v~gh~delwgla~hps--~~q~~T~gqdk 390 (626)
T KOG2106|consen 322 ETELPEQFG-PIRTV-AE-GKGD-ILVGTTRNFILQGTLENGFTLT-----VQGHGDELWGLATHPS--KNQLLTCGQDK 390 (626)
T ss_pred cccCchhcC-CeeEE-ec-CCCc-EEEeeccceEEEeeecCCceEE-----EEecccceeeEEcCCC--hhheeeccCcc
Confidence 223344334 38877 32 2333 7888888887776776654322 1266789999999999 89999999999
Q ss_pred cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEec
Q 000681 1257 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1257 ~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafsp 1336 (1354)
.+++|+ .. ++..+.. -..+..|+.|||.| .+|.|+..|...+.|.+.+.+.+++. . ..++++++|+|
T Consensus 391 ~v~lW~--~~-k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-------~~~ls~v~ysp 457 (626)
T KOG2106|consen 391 HVRLWN--DH-KLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-------NEQLSVVRYSP 457 (626)
T ss_pred eEEEcc--CC-ceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-------CCceEEEEEcC
Confidence 999999 22 3544443 35688999999999 99999999999999988877777755 2 47899999999
Q ss_pred CCCEEEEEECCCeEEEc
Q 000681 1337 YQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1337 dg~~Lasgs~Dg~V~IW 1353 (1354)
+|.+||.|+.|+.|+||
T Consensus 458 ~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIY 474 (626)
T ss_pred CCCEEEEecCCCeEEEE
Confidence 99999999999999998
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-18 Score=183.16 Aligned_cols=259 Identities=14% Similarity=0.270 Sum_probs=210.5
Q ss_pred EEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEEC----C--C-----C---------
Q 000681 1024 LAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNY----E--E-----D--------- 1073 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~----~--t-----g--------- 1073 (1354)
+.++..|++-.+|..+++ +.|++++||+.+.++++++.|++-.||.. + . +
T Consensus 163 ~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred eeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 445677889999999987 67999999999999999999999999962 1 1 0
Q ss_pred --------------------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc
Q 000681 1074 --------------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1133 (1354)
Q Consensus 1074 --------------------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l 1133 (1354)
..+..+.+|. +.|.+..|. ..|..+++++.|.+-.+||+++ + +++ +.+
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~---~vV~a~dWL--~gg~Q~vTaSWDRTAnlwDVEt--g--e~v---~~L 310 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRLTGHR---AVVSACDWL--AGGQQMVTASWDRTANLWDVET--G--EVV---NIL 310 (481)
T ss_pred ccccccccccccccCCceeeeeeeeeeccc---cceEehhhh--cCcceeeeeeccccceeeeecc--C--cee---ccc
Confidence 1244567777 778888885 6889999999999999999976 3 333 558
Q ss_pred cCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEE
Q 000681 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1213 (1354)
Q Consensus 1134 ~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIw 1213 (1354)
.||....+. ++-+|....+++++.|.+.++||.+..-+.+..|++|.+. |+++ .|. .+..+++|+.|.+|++|
T Consensus 311 tGHd~ELtH----cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt-VTS~-vF~-~dd~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 311 TGHDSELTH----CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT-VTSV-VFN-TDDRVVSGSDDRTVKVW 383 (481)
T ss_pred cCcchhccc----cccCCcceEEEEeccCceeEeccchhhcceeeeecccccc-eeEE-EEe-cCCceeecCCCceEEEe
Confidence 999988887 6667787888888999999999999655467889999888 9998 554 45679999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC---ccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~---~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|+++....+..++.. ++++.++++.. +.+|+.--.+..|++||++..+ -+-..-++|..-|+|++|..+.+
T Consensus 384 dLrNMRsplATIRtd----S~~NRvavs~g--~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 384 DLRNMRSPLATIRTD----SPANRVAVSKG--HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eeccccCcceeeecC----CccceeEeecC--CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 999887666666443 78999999987 8899999999999999998652 22335568999999999987644
Q ss_pred --EEEEEeCCCcEEEEeCC
Q 000681 1291 --IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1291 --~Lasgs~Dg~I~Iwd~~ 1307 (1354)
-|.+++.|..+.=|++.
T Consensus 458 ~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccccccccccceeeeeEec
Confidence 57788899999999854
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-18 Score=196.81 Aligned_cols=272 Identities=18% Similarity=0.259 Sum_probs=195.4
Q ss_pred EEEeeCCCcEEEEeCCCC----------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE--eeCCCCC
Q 000681 1024 LAVSKLNNPIACWDTRFE----------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFP 1085 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~----------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~--~~~h~~~ 1085 (1354)
|+++.+++.|.++|.+.. ..|..+.|-|.+..|++++.|.++++||+++++++.. +.+|.
T Consensus 67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~-- 144 (720)
T KOG0321|consen 67 LAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT-- 144 (720)
T ss_pred EEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc--
Confidence 445555555555554431 5688999999777999999999999999999988877 89999
Q ss_pred CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC--Ccce------------------EEeeeecccCCCCCccccee
Q 000681 1086 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK--DKQK------------------LVTAFSSIQGHKPGVRCSNV 1145 (1354)
Q Consensus 1086 ~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~--~~~~------------------lvs~~~~l~~h~~~V~si~~ 1145 (1354)
+.|.+++|. ..+...+++|+.||.|.|||+.... ...+ +....+.-..+...+.+...
T Consensus 145 -~SvkS~cf~-~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 145 -GSVKSECFM-PTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred -cccchhhhc-cCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 899999996 3678899999999999999985421 0000 00001112233444444333
Q ss_pred EEEEecCCCeEEEEEC-CCeEEEEECCCCceeee--------eecCC--CCCCeEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000681 1146 VVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVN--------PIPSS--SDCSISALTASQVHGGQLAAGFVDGSVRLYD 1214 (1354)
Q Consensus 1146 ~v~~sp~~~~Lla~g~-Dg~I~VWDl~t~~~~v~--------~i~~~--~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwD 1214 (1354)
+.+.+|...|+++|. |+.|+|||+++.. +.. .+..+ ..-.++++ ..+..|.++.+.|.|++|++||
T Consensus 223 -vv~fkDe~tlaSaga~D~~iKVWDLRk~~-~~~r~ep~~~~~~~t~skrs~G~~nL-~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 223 -VVLFKDESTLASAGAADSTIKVWDLRKNY-TAYRQEPRGSDKYPTHSKRSVGQVNL-ILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred -EEEEeccceeeeccCCCcceEEEeecccc-cccccCCCcccCccCcccceeeeEEE-EecCCCCeEEEEecCCcEEEEe
Confidence 445568899999886 9999999999765 221 12222 12247888 5666789999999999999999
Q ss_pred CCCCCe-eeEeecCCCCCC--CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-
Q 000681 1215 VRTPDM-LVCSTRPHTQQV--ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP- 1290 (1354)
Q Consensus 1215 lr~~~~-~~~~~~~~~~h~--~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~- 1290 (1354)
++.... ++. .+.++. ..-..-..+|+ +.++++|+.|...++|.+.+...+...+.+|.-.|++++|.|...
T Consensus 300 m~s~s~sP~~---~~sg~~~~sf~vks~lSpd--~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 300 MRSLSISPVA---EFSGKLNSSFYVKSELSPD--DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred ccccCcCchh---hccCcccceeeeeeecCCC--CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 997542 111 222221 11223345788 999999999999999999988778888999999999999987433
Q ss_pred EEEEEeCCCcEEEEeCC
Q 000681 1291 IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~~ 1307 (1354)
-+++++.|..++||++.
T Consensus 375 ~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLS 391 (720)
T ss_pred CceeeccCcceEEEecc
Confidence 45666999999999953
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-19 Score=211.56 Aligned_cols=246 Identities=20% Similarity=0.386 Sum_probs=211.5
Q ss_pred eCCCcEEEEeCCCC----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEE
Q 000681 1028 KLNNPIACWDTRFE----KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1103 (1354)
Q Consensus 1028 ~~d~~I~iWd~~~~----~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L 1103 (1354)
+....+++||.+.. ..+.++..-..++.+++|+.|..+-+|.+..-..+..+.+|. ..|.++.| +.+..+|
T Consensus 11 ~~~t~Lr~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f--~~~E~Ll 85 (825)
T KOG0267|consen 11 KRATKLRVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---SPIESLTF--DTSERLL 85 (825)
T ss_pred eeeeccccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---Ccceeeec--Ccchhhh
Confidence 33445678998764 557788887778899999999999999998777777899999 99999999 6889999
Q ss_pred EEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC
Q 000681 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1183 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~ 1183 (1354)
++|+.+|+|++||+.. . +. ++++.+|...+.+ +.|+|.+.+.+.|+.|+.+++||.+... |...+.+|
T Consensus 86 aagsasgtiK~wDlee--A--k~---vrtLtgh~~~~~s----v~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~ 153 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEE--A--KI---VRTLTGHLLNITS----VDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSH 153 (825)
T ss_pred cccccCCceeeeehhh--h--hh---hhhhhccccCcce----eeeccceEEeccccccccceehhhhccC-ceeeecCC
Confidence 9999999999999965 2 22 3778999998888 8899999999888999999999999888 89999985
Q ss_pred CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000681 1184 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1184 ~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
... |..+ .+.|+|++++.|+.|.++++||.+.++ +.. .+..|.+.+.++.|+|. .-.+++|+.|++|++||+
T Consensus 154 ~~v-v~~l-~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~---ef~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 154 TRV-VDVL-RLSPDGRWVASGGEDNTVKIWDLTAGK-LSK---EFKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred cce-eEEE-eecCCCceeeccCCcceeeeecccccc-ccc---ccccccccccccccCch--hhhhccCCCCceeeeecc
Confidence 554 6776 889999999999999999999999887 544 44567799999999999 889999999999999999
Q ss_pred CCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 000681 1264 RNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ 1299 (1354)
Q Consensus 1264 ~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg 1299 (1354)
++. +.+.........|.+++|+|+++.+++|..+.
T Consensus 226 etf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 226 ETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cee-EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 987 67777777788999999999999999987653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-19 Score=216.65 Aligned_cols=287 Identities=19% Similarity=0.287 Sum_probs=216.0
Q ss_pred EEEEEcCCCC-EEEEEE----------CCCcEEEEECC--CCc----eEEEeeCCCCCCCCeEEEEEEeeCCC--CEEEE
Q 000681 1045 KTALLQPFSP-IVVAAD----------ENERIKIWNYE--EDT----LLNSFDNHDFPDKGISKLCLVNELDV--SLLLV 1105 (1354)
Q Consensus 1045 ~sL~fspdg~-~Latgs----------~Dg~I~IWd~~--tg~----~l~~~~~h~~~~~~ItsL~f~~s~d~--~~L~t 1105 (1354)
-.++|+|++. ++++|. .+.++.||.++ +.+ .+..+... .+.+.|+|....++ .+|+.
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeecccCCCccceeec
Confidence 4578899887 566552 35566777544 222 22333322 47889999422222 36999
Q ss_pred EeCCCeEEEEEccCC--CCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecC
Q 000681 1106 ASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS 1182 (1354)
Q Consensus 1106 gs~DG~IrIWdl~~~--~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~~ 1182 (1354)
|.+||.|.+||.... .+...++ .....|.+.|.. ++|++..+ .|++|++||.|.|||+...+ .-.+...
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~g----LDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~~~~~ 157 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLG----LDFNPFQGNLLASGADDGEILIWDLNKPE-TPFTPGS 157 (1049)
T ss_pred cccCCceEEecchhhccCcchHHH---hhhcccCCceee----eeccccCCceeeccCCCCcEEEeccCCcC-CCCCCCC
Confidence 999999999998652 2333333 557789999998 99999877 66667799999999999865 3333321
Q ss_pred -CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cE
Q 000681 1183 -SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DI 1258 (1354)
Q Consensus 1183 -~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG---~I 1258 (1354)
.....|.+++|......+|++|+.+|.+.|||+|..+.++..- .+ +....+..+.|||+ +...+++++.|. .|
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~-~~~~~~S~l~WhP~-~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DT-PGRMHCSVLAWHPD-HATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cC-CCccceeeeeeCCC-CceeeeeecCCCCCcee
Confidence 1234599997766677889999999999999999887554432 22 22256889999999 777888888764 59
Q ss_pred EEEeCCCCCccEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEec
Q 000681 1259 QFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1259 ~IWDl~~~~~~v~~l~~h~~~VtsLafspdg-~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafsp 1336 (1354)
.+||+|....+++++++|...|.++.|++.+ .++++++.|+.|.+|+ -+|+.+..+.. . ...+..+.|.|
T Consensus 235 qlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-------~nW~fdv~w~p 306 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-------GNWCFDVQWCP 306 (1049)
T ss_pred EeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-------CcceeeeeecC
Confidence 9999998878999999999999999999977 6999999999999999 56788887765 2 37899999999
Q ss_pred CCC-EEEEEECCCeEEEcC
Q 000681 1337 YQV-LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1337 dg~-~Lasgs~Dg~V~IWd 1354 (1354)
... .+++++-||.|.||+
T Consensus 307 r~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred CCcchhhhheeccceeeee
Confidence 885 788888899999984
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=178.32 Aligned_cols=279 Identities=15% Similarity=0.245 Sum_probs=205.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCc
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1123 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~ 1123 (1354)
..|+.|++.|.+||+|..||.|.|||..+...-+.+.+|. .+|++++| +++|+.|+|++.|..|.+||+..+.--
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEe--cCCCCEeeeecCCceeEEEeccCCCce
Confidence 6799999999999999999999999999998888899999 89999999 799999999999999999999762211
Q ss_pred ceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEE---EEEcCCCC
Q 000681 1124 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISAL---TASQVHGG 1199 (1354)
Q Consensus 1124 ~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl---~~~s~~g~ 1199 (1354)
.++ ....+|+. +.|+|.....++++ .+..-.+-++.... ...++...+...... .++.+.|+
T Consensus 101 ~ri--------rf~spv~~----~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 101 KRI--------RFDSPVWG----AQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred eEE--------EccCccce----eeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC
Confidence 111 24566777 88998776665554 33334444444332 222322222111111 14788999
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC--------ccEE
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------DAYL 1271 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~--------~~v~ 1271 (1354)
++++|...|.+.+||..+.+ ++..++... ...|..+.++.. |+.|+.-+.|..||.|+++.-. ++.+
T Consensus 167 yIitGtsKGkllv~~a~t~e-~vas~rits--~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLE-CVASFRITS--VQAIKQIIVSRK--GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEEecCcceEEEEecchhe-eeeeeeech--heeeeEEEEecc--CcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 99999999999999999887 443332221 267889999988 9999999999999999987321 1111
Q ss_pred EEec--CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1272 TIDA--HRGSLSALAVHRHAPIIASGSA-KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1272 ~l~~--h~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
.++. .+..-.+++|+.+|.++++|+. -..++||. ..|..++.+.+ .. +.....+.|||-...+++- ..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-~k------gE~l~DV~whp~rp~i~si-~s 313 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-TK------GEELLDVNWHPVRPIIASI-AS 313 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-Cc------hhheeecccccceeeeeec-cC
Confidence 1110 1223467889999999888764 46799999 56888887766 32 3678899999999999888 68
Q ss_pred CeEEEcC
Q 000681 1348 ACVSIHS 1354 (1354)
Q Consensus 1348 g~V~IWd 1354 (1354)
|.|+||.
T Consensus 314 g~v~iw~ 320 (405)
T KOG1273|consen 314 GVVYIWA 320 (405)
T ss_pred CceEEEE
Confidence 8999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=191.41 Aligned_cols=318 Identities=16% Similarity=0.239 Sum_probs=234.0
Q ss_pred CCceEEEeeCCCcEEEEeCCCC-----------------------------------------CCeEEEEEcCCCCEEEE
Q 000681 1020 NSFDLAVSKLNNPIACWDTRFE-----------------------------------------KGTKTALLQPFSPIVVA 1058 (1354)
Q Consensus 1020 ~~~~L~~s~~d~~I~iWd~~~~-----------------------------------------~~I~sL~fspdg~~Lat 1058 (1354)
+...+++++.|..|++|.+..+ +.|.++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 3456888888889999976422 67899999999999999
Q ss_pred EECCCcEEEEECCCC--ceEEEeeCCCCC--CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeeccc
Q 000681 1059 ADENERIKIWNYEED--TLLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1134 (1354)
Q Consensus 1059 gs~Dg~I~IWd~~tg--~~l~~~~~h~~~--~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1134 (1354)
++.|.++.||..++. --+....-.... .....+..| +++++.+++-+.-|..++|.... ... ......+.
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d-~~~---w~~~~~iS 358 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKD-KTF---WTQEPVIS 358 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEE--cCCCCEEEEecccCcEEEEeccC-ccc---eeeccccc
Confidence 999999999976644 333333222111 145777778 68999999999999999999322 111 11223478
Q ss_pred CCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec--CCCCCCeEEEEEEcCCCCEEEEEECCCeEEE
Q 000681 1135 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDCSISALTASQVHGGQLAAGFVDGSVRL 1212 (1354)
Q Consensus 1135 ~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~--~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrI 1212 (1354)
||...|++ ++|+|.|.+|+++|.|.+-|++-.-..++.-+.+. --++..++|+++.+. ...|++|.....+|+
T Consensus 359 GH~~~V~d----v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 359 GHVDGVKD----VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccee----eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cceeeecccceeeee
Confidence 99999999 99999999999999999999987652221222221 123444888865543 667888888888999
Q ss_pred EECCC----------C----------------------Ceee--------------E-----------------------
Q 000681 1213 YDVRT----------P----------------------DMLV--------------C----------------------- 1223 (1354)
Q Consensus 1213 wDlr~----------~----------------------~~~~--------------~----------------------- 1223 (1354)
|+... + +... .
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 87521 0 0000 0
Q ss_pred ---eecCCCCCCCCeEEEEEecCCCCCEEEEEECCC-----cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000681 1224 ---STRPHTQQVERVVGISFQPGLDPAKIVSASQAG-----DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1224 ---~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG-----~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg 1295 (1354)
..+.+-||...|.+++.+|+ ++++|+++... .|++|+..+. ..+..+.+|.-.|+.++|+|||++|++.
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~--gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPT--GNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred cchhhHHhccCceeEEEEEecCC--CCEEeehhhhCCccceEEEEEeccch-hhhheecccceEEEEEEECCCCcEEEEe
Confidence 00122368889999999999 99999998653 4999999988 5777899999999999999999999999
Q ss_pred eCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1296 SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1296 s~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|.|+++.+|.........++. .....|..-|++..|+|++.++||++.|.+|+||.
T Consensus 591 sRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999953322222221 01223557899999999999999999999999994
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=189.92 Aligned_cols=301 Identities=17% Similarity=0.260 Sum_probs=224.5
Q ss_pred eeecccccccccCcCCCcchHHH----HHHHHHHHHHH---hhhheeecCCCCceEEEeeCCCcEEEEeCCCC-------
Q 000681 976 YNWSCGHFSKPLLTAADDTEEIL----ARREEREKFAL---EHIAKCQRSCNSFDLAVSKLNNPIACWDTRFE------- 1041 (1354)
Q Consensus 976 ~~ws~~~F~~P~~~~~e~~e~~~----~~r~~r~~~~~---e~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------- 1041 (1354)
-.|+-..|..-+|.+..---+.. .-|..|....+ |-+....-+....++.++ ..+.|++||+...
T Consensus 379 paysfh~~~dg~~qPvpfP~dal~g~gIPrharq~~tL~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~Pvs 457 (705)
T KOG0639|consen 379 PAYSFHVSADGQMQPVPFPPDALVGPGIPRHARQINTLAHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVS 457 (705)
T ss_pred ccccceecCCCcccCCCCCchhhcCCCCCchHHhhhhhccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccc
Confidence 45666666666665532211111 11444444333 223333333344456655 4568999999753
Q ss_pred --------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000681 1042 --------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1111 (1354)
Q Consensus 1042 --------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~--~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~ 1111 (1354)
.-|.++.++|||+.|++|++-.++.|||+..-...-. +.... -...+++. ++|.++.+++..||.
T Consensus 458 qLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssa---paCyALa~--spDakvcFsccsdGn 532 (705)
T KOG0639|consen 458 QLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA---PACYALAI--SPDAKVCFSCCSDGN 532 (705)
T ss_pred cccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcc---hhhhhhhc--CCccceeeeeccCCc
Confidence 5689999999999999999999999999975433221 22211 34566777 789999999999999
Q ss_pred EEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEE
Q 000681 1112 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1191 (1354)
Q Consensus 1112 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl 1191 (1354)
|+|||+.+ +.++ +.+++|...+.| ++.+++|..|.+||-|.+||.||++++. .+.... ..+.|.++
T Consensus 533 I~vwDLhn----q~~V---rqfqGhtDGasc----Idis~dGtklWTGGlDntvRcWDlregr-qlqqhd--F~SQIfSL 598 (705)
T KOG0639|consen 533 IAVWDLHN----QTLV---RQFQGHTDGASC----IDISKDGTKLWTGGLDNTVRCWDLREGR-QLQQHD--FSSQIFSL 598 (705)
T ss_pred EEEEEccc----ceee---ecccCCCCCcee----EEecCCCceeecCCCccceeehhhhhhh-hhhhhh--hhhhheec
Confidence 99999965 4455 789999999998 8888999999999999999999999887 443322 23458888
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEE
Q 000681 1192 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1192 ~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~ 1271 (1354)
-+.|.+.++++|-.++.|.+......++. ...-|.+-|.++.|.+. |+++++.+.|..+..|....+ ..+.
T Consensus 599 -g~cP~~dWlavGMens~vevlh~skp~ky-----qlhlheScVLSlKFa~c--GkwfvStGkDnlLnawrtPyG-asiF 669 (705)
T KOG0639|consen 599 -GYCPTGDWLAVGMENSNVEVLHTSKPEKY-----QLHLHESCVLSLKFAYC--GKWFVSTGKDNLLNAWRTPYG-ASIF 669 (705)
T ss_pred -ccCCCccceeeecccCcEEEEecCCccce-----eecccccEEEEEEeccc--CceeeecCchhhhhhccCccc-ccee
Confidence 66789999999999999999887766522 12246689999999999 999999999999999998877 3544
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1272 ~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
..+ ....|.++.++-|.++|+|||.|..-.||.+
T Consensus 670 qsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 670 QSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 444 3568999999999999999999998888863
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=194.03 Aligned_cols=285 Identities=18% Similarity=0.233 Sum_probs=199.2
Q ss_pred eEEEEEcC---CCCEEEEEECCCcEEEEECCCCc------eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000681 1044 TKTALLQP---FSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1044 I~sL~fsp---dg~~Latgs~Dg~I~IWd~~tg~------~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrI 1114 (1354)
..+..|++ ...+|+.+.+||.|.++|..... .+..+..|. ..|.++.|. +....|++++.|.++++
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~---nAifDl~wa--pge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK---NAIFDLKWA--PGESLLVSASGDSTIRP 126 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc---ceeEeeccC--CCceeEEEccCCceeee
Confidence 34567766 33489999999999999987542 245677888 899999995 57789999999999999
Q ss_pred EEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEE-EEECCCeEEEEECCCCc-------------------
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY-ASGEVSSIMLWDLEKEQ------------------- 1174 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Ll-a~g~Dg~I~VWDl~t~~------------------- 1174 (1354)
||+..+. ++ ..+.+.||...|.+ ++|.+.+..++ +||.||.|.|||++-..
T Consensus 127 Wdvk~s~----l~-G~~~~~GH~~SvkS----~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 127 WDVKTSR----LV-GGRLNLGHTGSVKS----ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred eeeccce----ee-cceeecccccccch----hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9997621 11 11236899999999 78888776655 55799999999987422
Q ss_pred -------eeeeeecCCCCC---CeEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCCeeeEee-------cCCCCCCCCeE
Q 000681 1175 -------QMVNPIPSSSDC---SISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCST-------RPHTQQVERVV 1236 (1354)
Q Consensus 1175 -------~~v~~i~~~~~~---~Vtsl~~~s~~g~~L~sgs~-DGsVrIwDlr~~~~~~~~~-------~~~~~h~~~I~ 1236 (1354)
+.+.....+... .|+.+ ++ .|...|++++. |+.|+|||+|......+.- ..+......++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv-~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVV-LF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEE-EE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 001111111111 24555 44 46777887776 9999999999765322211 11111134677
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCc--eE
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGS--LSALAVHRHAPIIASGSAKQLIKVFSLEGE--QL 1311 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h~~~--VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~--~l 1311 (1354)
++..... |.+|.+.+.|+.|++|++.+.. .++..+.++... -..-..+||+.++++|+.|...++|.++.- ..
T Consensus 276 nL~lDss--Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 276 NLILDSS--GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EEEecCC--CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888777 8888888889999999998653 344444444221 122346899999999999999999997643 23
Q ss_pred EEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000681 1312 GTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1312 ~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IWd 1354 (1354)
..+.+ | .-.|++++|.|.. .-+++++.|..++||+
T Consensus 354 ~~l~G-h-------t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 354 ALLLG-H-------TREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hhhhC-c-------ceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 33444 4 4789999998865 4577779999999995
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-17 Score=174.44 Aligned_cols=260 Identities=14% Similarity=0.300 Sum_probs=187.2
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec-C-CCeEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-Q-SGYLYA 1158 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-~-~~~Lla 1158 (1354)
+|. .-|+++.| +..|+.+++|+.|++|+|||.....+...+...| +.|.+.|.. +.|-+ . |..+++
T Consensus 11 ~h~---DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~r----V~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 11 GHK---DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWR----VVWAHPEFGQVVAT 78 (361)
T ss_pred CCc---ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEE----EEecCccccceEEE
Confidence 455 67999999 6899999999999999999987767777777555 567888877 77743 3 666777
Q ss_pred EECCCeEEEEECC--CCc------eeeeeecCCCCCCeEEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeee-------
Q 000681 1159 SGEVSSIMLWDLE--KEQ------QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLV------- 1222 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~--t~~------~~v~~i~~~~~~~Vtsl~~~s~-~g~~L~sgs~DGsVrIwDlr~~~~~~------- 1222 (1354)
++.|+++.||.-. ..+ ....++....+ .|+.|.+.+. -|-.+++++.||.||||+.-..-.+.
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 7999999999752 111 02334444444 4999954432 36789999999999999876433111
Q ss_pred --EeecCCCCCCCCeEEEEEecC-CCCCEEEEEECC-----CcEEEEeCCCCC---ccEEEEecCCCCeEEEEEcCCC--
Q 000681 1223 --CSTRPHTQQVERVVGISFQPG-LDPAKIVSASQA-----GDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHA-- 1289 (1354)
Q Consensus 1223 --~~~~~~~~h~~~I~sv~fsp~-~~g~~Lasgs~D-----G~I~IWDl~~~~---~~v~~l~~h~~~VtsLafspdg-- 1289 (1354)
....+...+.....|+.|+|. ....+|+.|+.+ +.++||...... ..+.++.+|..+|++++|.|+-
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 111123346678889999986 345678888876 578999876543 3455677899999999999963
Q ss_pred --CEEEEEeCCCcEEEEeCCCce-------------EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1290 --PIIASGSAKQLIKVFSLEGEQ-------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1290 --~~Lasgs~Dg~I~Iwd~~g~~-------------l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+||+++.|| |+||++.... +..+.-+.-..++.|.+.|+.+.|+-.|..|++.|.||.|++|.
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 2899999999 9999965311 11111100011335779999999999999999999999999993
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=198.15 Aligned_cols=241 Identities=19% Similarity=0.272 Sum_probs=187.7
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
.|. .+.+.|+| .++|.+|++++.||.|++|+.......++.+ ..+...|.+ ..-.++++++|+
T Consensus 11 aht---~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti------~~~g~~v~~------ia~~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHT---GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETI------DISGELVSS------IACYSNHFLTGS 73 (933)
T ss_pred hcc---CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchh------hccCceeEE------EeecccceEEee
Confidence 466 67889999 7899999999999999999986632333322 224444444 223577999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1240 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~f 1240 (1354)
.+++|.+|....+. ..++-....-+++++ .++.+|+++++|+.|-.|++.+...... .. ...+|.++|.++.+
T Consensus 74 ~~~tv~~y~fps~~--~~~iL~Rftlp~r~~-~v~g~g~~iaagsdD~~vK~~~~~D~s~-~~---~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGE--EDTILARFTLPIRDL-AVSGSGKMIAAGSDDTAVKLLNLDDSSQ-EK---VLRGHDAPVLQLSY 146 (933)
T ss_pred ccceEEEeeCCCCC--ccceeeeeeccceEE-EEecCCcEEEeecCceeEEEEeccccch-he---eecccCCceeeeeE
Confidence 99999999998776 222333334457888 6788999999999999999999987763 33 34477899999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-ceE
Q 000681 1241 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQL 1311 (1354)
Q Consensus 1241 sp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h--------~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l 1311 (1354)
+|. +++||+.+.||.|++||+.++ ....++.+- ...+..++|||+|..++..+.|+.|++|+..+ +..
T Consensus 147 ~p~--~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 147 DPK--GNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred cCC--CCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999 999999999999999999987 455555431 34567899999998888899999999999654 555
Q ss_pred EEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1312 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1312 ~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..++..+ +...+++++|+|.|+|||+++.||.|.|||
T Consensus 224 f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 224 FKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred eeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 5555512 234599999999999999999999999997
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=186.74 Aligned_cols=281 Identities=17% Similarity=0.230 Sum_probs=211.3
Q ss_pred EEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEE--ECCCcEEEEECCCC--c--eEEEeeCCCCC
Q 000681 1024 LAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAA--DENERIKIWNYEED--T--LLNSFDNHDFP 1085 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latg--s~Dg~I~IWd~~tg--~--~l~~~~~h~~~ 1085 (1354)
+.+....+.+++||.... -++.+++|+.... |+++ +.|..|++|.-... + .+....+.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--- 80 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--- 80 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc---
Confidence 334445567899998753 4588899988765 4444 46778899965422 1 12222222
Q ss_pred CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeE
Q 000681 1086 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1086 ~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I 1165 (1354)
.-.|+.. .....++++||..|.|+|||+.. ..+. +.+++|...|++ +.|+-.+.+|++++..|.|
T Consensus 81 --~~~Cv~~--~s~S~y~~sgG~~~~Vkiwdl~~----kl~h---r~lkdh~stvt~----v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 81 --NAFCVAC--ASQSLYEISGGQSGCVKIWDLRA----KLIH---RFLKDHQSTVTY----VDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred --hHHHHhh--hhcceeeeccCcCceeeehhhHH----HHHh---hhccCCcceeEE----EEecCCcceeEEeccCCcE
Confidence 2233333 12348999999999999999954 2222 668999999988 9999999999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000681 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1166 ~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~ 1245 (1354)
.|..+.++. ...++....+..|.-+.+......+|.+++.+|.|.+||+....+... ....|..+...|+|+|. +
T Consensus 146 iih~~~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsps-n 220 (673)
T KOG4378|consen 146 IIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPS-N 220 (673)
T ss_pred EEEecccCc-cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCC-c
Confidence 999999988 677777665554656644444456778899999999999987663332 33467899999999998 7
Q ss_pred CCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC--ceEEEEeccCCcccc
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMA 1323 (1354)
Q Consensus 1246 g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g--~~l~~i~~~h~~fl~ 1323 (1354)
..+|++.+.|..|.+||++.. .....+. ...+.+.++|.++|.+|++|+..|.|..||+.+ .++..+.. |.
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-h~---- 293 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQ-ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-HD---- 293 (673)
T ss_pred cceEEEecccceEEEeecccc-cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-cc----
Confidence 889999999999999999976 3554544 356899999999999999999999999999654 56777766 65
Q ss_pred ccCCCeEEEEEecCC
Q 000681 1324 QKIGSVNCLTFHPYQ 1338 (1354)
Q Consensus 1324 ~~~~~V~sLafspdg 1338 (1354)
..|++++|-|.-
T Consensus 294 ---~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ---ASVTRVAFQPSP 305 (673)
T ss_pred ---cceeEEEeeecc
Confidence 679999998765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=189.82 Aligned_cols=284 Identities=15% Similarity=0.259 Sum_probs=221.6
Q ss_pred EEEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1034 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1034 ~iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
.+|.......|..++|-|||..|+.+. +..+.|||..+|..+.++++|. ..|.+++| +.||..+++|+.|+.|.
T Consensus 5 ~~~r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK---DtVycVAy--s~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 5 LTWRDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAY--AKDGKRFASGSADKSVI 78 (1081)
T ss_pred hhhhcccccchheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc---ceEEEEEE--ccCCceeccCCCceeEE
Confidence 345555556899999999999888776 6789999999999999999999 99999999 79999999999999999
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
||.-.. +|. + -..|...|.| +.|+|-+..+++++-+ ..-+|...... +... .....|.+. .
T Consensus 79 ~W~~kl-EG~--L------kYSH~D~IQC----MsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~--kss~R~~~C-s 139 (1081)
T KOG1538|consen 79 IWTSKL-EGI--L------KYSHNDAIQC----MSFNPITHQLASCSLS-DFGLWSPEQKS--VSKH--KSSSRIICC-S 139 (1081)
T ss_pred Eecccc-cce--e------eeccCCeeeE----eecCchHHHhhhcchh-hccccChhhhh--HHhh--hhheeEEEe-e
Confidence 998643 121 1 1358888888 9999998888887632 25688766544 2222 223346666 6
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CCCCEEEEEECCCcEEEEeCCCCCccE
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~---~~g~~Lasgs~DG~I~IWDl~~~~~~v 1270 (1354)
|..+|.+++.|-.||+|.+-+-...+ ...+- ...|.+.+|.+++|+|. +....+++..-..++.+|.+... .+
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEe-k~~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~I 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEE-KVKIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QI 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCc-ceEEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--ee
Confidence 78899999999999999987644333 33333 44467899999999997 23357788888888888887643 33
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeE
Q 000681 1271 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1271 ~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V 1350 (1354)
..-+.-.-...|+.+.++|.++..|+.|+.+++|..+|-.+.++.. .. ..|+.++.+|++++++.|+.||+|
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-~D-------~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-QD-------SWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-cc-------eeEEEEEEccCCceEEEEEccCee
Confidence 3222223345789999999999999999999999999999888865 33 789999999999999999999999
Q ss_pred EEcC
Q 000681 1351 SIHS 1354 (1354)
Q Consensus 1351 ~IWd 1354 (1354)
..|+
T Consensus 288 ACyN 291 (1081)
T KOG1538|consen 288 ACYN 291 (1081)
T ss_pred ehhh
Confidence 8764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=179.56 Aligned_cols=285 Identities=14% Similarity=0.214 Sum_probs=198.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeec
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
+..+|++..+|.|++||..+++.+..|+++. ..++.+.|+.......+.+|+.||+||+||++........ .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-----~ 111 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-----S 111 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-----e
Confidence 3678999999999999999999999999999 8889999986557889999999999999999873333222 2
Q ss_pred ccCCCCCcccceeEEEEecCCCeEEEEE----CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASG----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1208 (1354)
Q Consensus 1133 l~~h~~~V~si~~~v~~sp~~~~Lla~g----~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG 1208 (1354)
...+.+.... +++-+-.++.+.+|. .+-.|.+||++..++.+..+...+...||++.+.+.+.++|++|+.||
T Consensus 112 ~~~~~~~~f~---~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 112 WTQQSGTPFI---CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ccCCCCCcce---EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3444422211 144443455555552 467799999999884477776555555999988888999999999999
Q ss_pred eEEEEECCCCCe---eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC---------
Q 000681 1209 SVRLYDVRTPDM---LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------- 1276 (1354)
Q Consensus 1209 sVrIwDlr~~~~---~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h--------- 1276 (1354)
-|.+||+..... +..++ .|...|.++.|... +.+.|.+-+..++..+|+++.+. +...+...
T Consensus 189 LvnlfD~~~d~EeDaL~~vi----N~~sSI~~igw~~~-~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~ 262 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVI----NHGSSIHLIGWLSK-KYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRK 262 (376)
T ss_pred eEEeeecCCCcchhhHHHhh----cccceeeeeeeecC-CcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHh
Confidence 999999986532 22222 45578999999987 45679999999999999999874 33332211
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1277 ---RGSLSALAVHRHAPIIASGSA-KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1277 ---~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
...+...-...++..++.++. -+...++-+....-.....+...+.++|...|.++.|...+.++.|||.||.+.+
T Consensus 263 ~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 263 EDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred hhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 011222222234445555544 5566666532111111111012233346688999999999999999999999999
Q ss_pred cC
Q 000681 1353 HS 1354 (1354)
Q Consensus 1353 Wd 1354 (1354)
|.
T Consensus 343 Wk 344 (376)
T KOG1188|consen 343 WK 344 (376)
T ss_pred Ee
Confidence 94
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=182.44 Aligned_cols=253 Identities=22% Similarity=0.343 Sum_probs=176.7
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC-----C----CcceEEeeeecccCCCCCcccceeEEEEecC-CCeE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-----K----DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL 1156 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~-----~----~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~-~~~L 1156 (1354)
+.++.+.-.+-.+..+.++-+..|.|+||++... . .+.....++.++.+|...-+. ++|+|- .+.+
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~----LdWSp~~~g~L 227 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG----LDWSPIKTGRL 227 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee----eeccccccccc
Confidence 4444444422235566777788999999998431 0 001111223445667654444 999984 4568
Q ss_pred EEEECCCeEEEEECCCCceee--eeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1157 YASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~~~v--~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
++|..-+.|++|...++.-.+ ..+.+|..+ |-.+.+.+.....|++|+.||+|+|||+|.+....... .+.|.+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S-VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS-VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--TKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccc-hhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--eeccCCc
Confidence 888788899999988865112 234456555 99996555567899999999999999999884333332 1567899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC--ccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--c
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG--E 1309 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~--~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~g--~ 1309 (1354)
|+-|.|+.. ..+|++|+.||+++|||+|..+ .++.+++.|+.+|+++.|||+.. .|++++.|.+|.|||+.- .
T Consensus 305 VNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999998 6699999999999999999643 68999999999999999999754 888999999999999531 1
Q ss_pred ----------eEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCe
Q 000681 1310 ----------QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADAC 1349 (1354)
Q Consensus 1310 ----------~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~ 1349 (1354)
.+..+.. .--|..+....|..+.||+.- .+|++.+.||.
T Consensus 383 ~ee~~~~a~~~L~dlPp-QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPP-QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhhhccccccchhcCCc-eeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 0111110 000111123568889999876 57777777874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=181.76 Aligned_cols=272 Identities=16% Similarity=0.282 Sum_probs=211.0
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l~ 1077 (1354)
.|+..++.+....+++++.|+.+++|..... .+|.+.+|+|+|. .+++++.....+.||+++.+..+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 4788899998889999999999999988754 7899999999999 89999999999999999875433
Q ss_pred --EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCe
Q 000681 1078 --SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1078 --~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~ 1155 (1354)
...++. ...+..... ++++++|+..|..|.|.+-...+ .+++..+ ...+.|.. ++|+.++..
T Consensus 295 ~~~~~g~e--~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT----~eli~s~----KieG~v~~----~~fsSdsk~ 358 (514)
T KOG2055|consen 295 LKPPYGVE--EKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKT----KELITSF----KIEGVVSD----FTFSSDSKE 358 (514)
T ss_pred ccCCCCcc--cchhheeEe--cCCCCeEEEcccCceEEeehhhh----hhhhhee----eeccEEee----EEEecCCcE
Confidence 233333 234555556 78999999999999999987754 2232111 12334455 889999999
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCC-----CCeeeEeecCCCC
Q 000681 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT-----PDMLVCSTRPHTQ 1230 (1354)
Q Consensus 1156 Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~-----~~~~~~~~~~~~~ 1230 (1354)
|++++.+|.|.+||++... +++.+.....-.-+++ +.+.+|.+|++|+..|.|.|||..+ ...++..+..+.
T Consensus 359 l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~-~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt- 435 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSL-CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT- 435 (514)
T ss_pred EEEEcCCceEEEEecCCcc-eEEEEeecCccceeee-eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-
Confidence 9999999999999999998 9999886544445666 6678999999999999999999653 122333333333
Q ss_pred CCCCeEEEEEecCCCCCEEEEEEC--CCcEEEEeCCCCCccEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQ--AGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~--DG~I~IWDl~~~~~~v~~l~~---h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
..|+++.|+++ +.+|+.+|. +..+++-.+.+. .....+.. .-+.|+|++|+|++.++|.|..+|.|.+|.
T Consensus 436 --t~Itsl~Fn~d--~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 436 --TAITSLQFNHD--AQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred --eeeeeeeeCcc--hhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 78999999999 999888875 466888877655 33333432 235799999999999999999999999997
Q ss_pred C
Q 000681 1306 L 1306 (1354)
Q Consensus 1306 ~ 1306 (1354)
+
T Consensus 511 L 511 (514)
T KOG2055|consen 511 L 511 (514)
T ss_pred e
Confidence 5
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-14 Score=173.21 Aligned_cols=298 Identities=14% Similarity=0.170 Sum_probs=196.7
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1042 KGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fspdg-~~Latgs~Dg~I~IWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
..+..++.++.. .++++|+.||+|+|||...- +...++.- .++++..+..+ ..++.+++++.||.|+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~--~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMC--GNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEec--cCCCeEEEEcCCCeEE
Confidence 445577776655 89999999999999997632 12222332 23688888885 6899999999999999
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCc-ccceeEEEEecC-C-CeEEEEECCCeEEEEECCCCceeeeeecC--CCCCCe
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGV-RCSNVVVDWQQQ-S-GYLYASGEVSSIMLWDLEKEQQMVNPIPS--SSDCSI 1188 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V-~si~~~v~~sp~-~-~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~--~~~~~V 1188 (1354)
+.++.............+....+..++ .+. -+|... . ..++.+...+.|..||++... ....++. .++. |
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m---~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~-v 1198 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSM---HAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGL-V 1198 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEe---ecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccccc-e
Confidence 999966333333333334344333322 221 223222 2 256666788999999999876 5555443 3444 9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC-CCEEEEEE--CCCcEEEEeCCC
Q 000681 1189 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD-PAKIVSAS--QAGDIQFLDIRN 1265 (1354)
Q Consensus 1189 tsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~-g~~Lasgs--~DG~I~IWDl~~ 1265 (1354)
+++ +.++.+++++.|+..|.+.+||+|-+. .+..+ .+ .+..+|..+..+|-.. ....++++ ..+.|.+|++.+
T Consensus 1199 TSi-~idp~~~WlviGts~G~l~lWDLRF~~-~i~sw-~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1199 TSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV-PILSW-EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred eEE-EecCCceEEEEecCCceEEEEEeecCc-eeecc-cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 999 788899999999999999999999887 55555 33 3448899999988721 13444444 468899999998
Q ss_pred CCccEEEEecC-------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEE--------------
Q 000681 1266 HKDAYLTIDAH-------------------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG-------------- 1312 (1354)
Q Consensus 1266 ~~~~v~~l~~h-------------------~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~-------------- 1312 (1354)
+ ..-.++... .-......+...+.++.+|+.|+.|+.||.......
T Consensus 1275 g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1275 G-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred C-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 7 344444322 111223445555679999999999999995322111
Q ss_pred -------EEecc---------------------------CCc-cccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000681 1313 -------TIRYH---------------------------HPS-FMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1313 -------~i~~~---------------------------h~~-fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IWd 1354 (1354)
.+.+. +.. -...|..+|+++++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00000 000 012355778888876554 6888889999999994
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=171.43 Aligned_cols=283 Identities=18% Similarity=0.291 Sum_probs=204.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------------ceEEEeeCCCCCCCCeEEEEEEe-----eCCCCEEE
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVN-----ELDVSLLL 1104 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg------------~~l~~~~~h~~~~~~ItsL~f~~-----s~d~~~L~ 1104 (1354)
.-...+.|+|||..|++-+.|..+.+|++... +....++ -+.+..|.+-+|.. .|+..+++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE--eccCCEEEEEEeeeccccCCCccceee
Confidence 44668899999999999999999999987521 1111111 12235677777742 46778999
Q ss_pred EEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECC-CCcee-eee-ec
Q 000681 1105 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-KEQQM-VNP-IP 1181 (1354)
Q Consensus 1105 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~-t~~~~-v~~-i~ 1181 (1354)
+.+.+.-|++||..+ ++.+. +++. -+|...+.. +.+++|+++|.+|++| ..+.|+++|+. .+..+ +.. +.
T Consensus 128 ~ssr~~PIh~wdaft--G~lra--Sy~~-ydh~de~ta-AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFT--GKLRA--SYRA-YDHQDEYTA-AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eccccCceeeeeccc--ccccc--chhh-hhhHHhhhh-heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 999999999999987 43322 2222 345555554 4459999999999875 56789999994 44311 111 11
Q ss_pred ---CCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc
Q 000681 1182 ---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD 1257 (1354)
Q Consensus 1182 ---~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG~ 1257 (1354)
....+.|.++++.+.+...++.|+....+-||.-..... ... ..+|.+.|+.+.|+++ |+.|.+|+. |-.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~l---lggh~gGvThL~~~ed--Gn~lfsGaRk~dk 274 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQL---LGGHGGGVTHLQWCED--GNKLFSGARKDDK 274 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eee---ecccCCCeeeEEeccC--cCeecccccCCCe
Confidence 122344777755555667999999999988888776663 332 2378899999999999 889999885 678
Q ss_pred EEEEeCCCCCccEEEEecCCC-CeEE--EEEcCCCCEEEEEeCCCcEEEEeCC--CceEEEEeccCCccccccCCCeEEE
Q 000681 1258 IQFLDIRNHKDAYLTIDAHRG-SLSA--LAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCL 1332 (1354)
Q Consensus 1258 I~IWDl~~~~~~v~~l~~h~~-~Vts--Lafspdg~~Lasgs~Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~sL 1332 (1354)
|..||+|..+.++..+..|.+ .-.. ....|++++||+|+.||.|++||+. |+.+..+.. | ...++.+
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-~-------sd~vNgv 346 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-Y-------SDTVNGV 346 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-c-------cccccce
Confidence 999999988788888888865 2223 4557899999999999999999965 455555554 4 3789999
Q ss_pred EEecCCCEEEEEECC
Q 000681 1333 TFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1333 afspdg~~Lasgs~D 1347 (1354)
+++|--.++|+++..
T Consensus 347 slnP~mpilatssGq 361 (406)
T KOG2919|consen 347 SLNPIMPILATSSGQ 361 (406)
T ss_pred ecCcccceeeeccCc
Confidence 999998888888754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=169.66 Aligned_cols=255 Identities=13% Similarity=0.159 Sum_probs=176.8
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeE
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1077 ~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
..+++|. +.|++++| +.||.+|+|++.|++||||++.+-..+. ..+.+.--... . ...+.|.|+...+
T Consensus 80 ~~LKgH~---~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~e--Hr~~R~nve~d-h----pT~V~FapDc~s~ 147 (420)
T KOG2096|consen 80 SVLKGHK---KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKE--HRCIRQNVEYD-H----PTRVVFAPDCKSV 147 (420)
T ss_pred hhhhccC---CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhh--hhHhhccccCC-C----ceEEEECCCcceE
Confidence 3578898 99999999 7899999999999999999996521111 11111111011 1 1238899998888
Q ss_pred EEEE-CCCeEEEEECCCCce---ee-------eeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000681 1157 YASG-EVSSIMLWDLEKEQQ---MV-------NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225 (1354)
Q Consensus 1157 la~g-~Dg~I~VWDl~t~~~---~v-------~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~ 1225 (1354)
++.. ...++++|.+...+. .. ..+...+...|.++ =...++.++++++.|..|.+||++ ++ ....+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i-GiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~i 224 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI-GIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSI 224 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEE-eecCCceEEEEecCCCcEEEEecC-Cc-eeeee
Confidence 7775 556799997654320 00 01222233345555 334567899999999999999999 55 44444
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-------ccEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000681 1226 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1298 (1354)
Q Consensus 1226 ~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-------~~v~~l~~h~~~VtsLafspdg~~Lasgs~D 1298 (1354)
.+.. ..-+..+++|+ |+++++++..-.|++|.+--++ ..+..+++|...|..++|+++...+++.|.|
T Consensus 225 dtnq---~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 225 DTNQ---SSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred cccc---ccccceeeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 3332 55667889999 9999999999999999974322 3456788999999999999999999999999
Q ss_pred CcEEEEeCC-----CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1299 QLIKVFSLE-----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1299 g~I~Iwd~~-----g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
|+++|||.+ ++....++. -+.++....+....++.+|.|+.||.+.. ..+++|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~-g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKE-GSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred CcEEEeeccceEecCCCchHhhc-CCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 999999964 333333332 11223334455568999999999988753 345554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=177.28 Aligned_cols=184 Identities=23% Similarity=0.434 Sum_probs=149.9
Q ss_pred ECCCeEEEEECCCCc---------------eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000681 1160 GEVSSIMLWDLEKEQ---------------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1224 (1354)
Q Consensus 1160 g~Dg~I~VWDl~t~~---------------~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~ 1224 (1354)
++.|.|+|||+.... .++.++.+|... =.++++.+.....+++|.--+.|++|...++. -..-
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E-Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-W~vd 249 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE-GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-WKVD 249 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc-ceeeecccccccccccCccccceEeeeeccCc-eeec
Confidence 688999999986321 245566666544 67885544444568888888899999998876 3333
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000681 1225 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1225 ~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
...+.+|+..|-.++|+|. ....|++||.||+|+|||+|.+. ......+.|.+.|+-+.|+.+..+||+|+.||+++|
T Consensus 250 ~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred CccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence 3367789999999999998 67899999999999999999872 333444889999999999999999999999999999
Q ss_pred EeCC----CceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000681 1304 FSLE----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1304 wd~~----g~~l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IWd 1354 (1354)
||+. ++++.+++. |. .+|+++.|||+. ..+++++.|..|.|||
T Consensus 329 wDLR~~~~~~pVA~fk~-Hk-------~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKY-HK-------APITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred EEhhhccCCCcceeEEe-cc-------CCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 9954 678889998 66 899999999976 6788888999999997
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=180.85 Aligned_cols=222 Identities=14% Similarity=0.227 Sum_probs=180.1
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc
Q 000681 1045 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1045 ~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
.|+.......++++|+..+.|+|||+......+.+++|. ..|+++.+ .....+|++++..|.|.|..+.+.....
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~---stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ---STVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc---ceeEEEEe--cCCcceeEEeccCCcEEEEecccCcccc
Confidence 344444455899999999999999999777777889999 89999999 5688999999999999999987632222
Q ss_pred eEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEE
Q 000681 1125 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1203 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~s 1203 (1354)
.+. .+....|+- +.|++....+++ ++++|.|.+||+.... ++..+...+..+...|++.+.+..+|++
T Consensus 158 ~f~------~~sgqsvRl----l~ys~skr~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 158 TFT------IDSGQSVRL----LRYSPSKRFLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cee------cCCCCeEEE----eecccccceeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEE
Confidence 211 122233433 889988777665 4899999999999888 7777777777778899666667789999
Q ss_pred EECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEE
Q 000681 1204 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1204 gs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsL 1283 (1354)
.+.|..|.+||++..+...+ + .. ..+...++|.++ |.+|+.|+..|.|..||+|..+.++.++..|...|+++
T Consensus 227 VG~Dkki~~yD~~s~~s~~~-l-~y---~~Plstvaf~~~--G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDR-L-TY---SHPLSTVAFSEC--GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred ecccceEEEeecccccccce-e-ee---cCCcceeeecCC--ceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 99999999999997763332 2 22 268999999999 99999999999999999999889999999999999999
Q ss_pred EEcCCC
Q 000681 1284 AVHRHA 1289 (1354)
Q Consensus 1284 afspdg 1289 (1354)
+|-+..
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 998764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=180.38 Aligned_cols=113 Identities=16% Similarity=0.282 Sum_probs=98.6
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC------ccEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~------~~v~~l~~h~~~VtsLafspd-g~~Lasgs~Dg~I~Iwd 1305 (1354)
..|+.++|.|- +...|++++.||.|++|.+..++ .+-..+..|...|+++.|||- ..+|++++.|.+|++||
T Consensus 628 t~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 56888999997 78899999999999999987543 456778899999999999995 45899999999999999
Q ss_pred C-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1306 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1306 ~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+ ++.....+.+ |. +.|.+++|+|+|+.+|+.+.||+|+||.
T Consensus 707 l~~~~~~~~l~g-Ht-------dqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVG-HT-------DQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheecc-Cc-------CceeEEEECCCCcceeeeecCceEEEeC
Confidence 5 4666667777 65 8899999999999999999999999985
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=177.25 Aligned_cols=260 Identities=18% Similarity=0.241 Sum_probs=192.4
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC-C
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-G 1154 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~-~ 1154 (1354)
....+.+. ++|++++|++..+..++++|..-|.|-+||+...+... ..+..+..|..+|.+ +.|+|.+ .
T Consensus 179 ~~v~kv~~---~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---d~v~~f~~hs~~Vs~----l~F~P~n~s 248 (498)
T KOG4328|consen 179 LNVAKVTD---RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---DGVYLFTPHSGPVSG----LKFSPANTS 248 (498)
T ss_pred cceeEecc---cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---CceEEeccCCccccc----eEecCCChh
Confidence 34445555 89999999876677899999999999999995321111 112346789999999 8888864 5
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCC-CCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1233 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~-~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~ 1233 (1354)
.+++++.||+|+.-|+++.. ....+....+ ..+.++ -++.+...++.|..=|...+||+|++......+ .-|..
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~-d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~---~lh~k 323 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSL-DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL---RLHKK 323 (498)
T ss_pred heeeeccCceeeeeeecchh-hHHHhhcCccceeeeec-cccCCCccEEEeecccceEEEEeecCCccchhh---hhhhc
Confidence 68888999999999999875 2222222122 224555 455566677777777799999999887544433 34567
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC---ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC---
Q 000681 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--- 1307 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~---~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~--- 1307 (1354)
.|.+++++|. ...+|+|+|.|++.+|||+|... .++.....|...|.+..|||.+-.|+|.+.|..|+|||..
T Consensus 324 KI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 324 KITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ccceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 9999999998 67899999999999999998642 2344455699999999999998889999999999999962
Q ss_pred -C-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1308 -G-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1308 -g-~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
. ..+.++ . |..+.+.+..+ ...+|+|+..++++|..-..|-|||
T Consensus 403 a~~~p~~~I-~-Hn~~t~RwlT~-fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 403 AKDEPLGTI-P-HNNRTGRWLTP-FKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ccCCcccee-e-ccCcccccccc-hhheeCCCccEEEEeccCcceeEEc
Confidence 2 333444 3 66555555443 4568999999999998777777765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=163.78 Aligned_cols=276 Identities=14% Similarity=0.119 Sum_probs=206.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
...++++.-|..++++..+|.+-+||+.+- .+|++++||++|+.|+|++.|..|.+||+..|..++.+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 456899999999999999999999999874 7899999999999999999999999999999999999886
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~ 1161 (1354)
.. +|....|++...+..+++-- +..-.+-++.. .+..+. -...........-...|++.|.++++|..
T Consensus 106 ~s----pv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~--~~h~~L-----p~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 106 DS----PVWGAQWHPRKRNKCVATIM-EESPVVIDFSD--PKHSVL-----PKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred cC----ccceeeeccccCCeEEEEEe-cCCcEEEEecC--Cceeec-----cCCCccccccccccccccCCCCEEEEecC
Confidence 65 89999997644444444443 33333444432 222211 01111111111112458889999999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCee-----e---EeecCCCCCCC
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML-----V---CSTRPHTQQVE 1233 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~-----~---~~~~~~~~h~~ 1233 (1354)
.|.+.++|.++-+ ++..++......|..+ .++..|+.|+..+.|..||.|+++.-... . ..++.. -.+.
T Consensus 174 KGkllv~~a~t~e-~vas~rits~~~IK~I-~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~ 250 (405)
T KOG1273|consen 174 KGKLLVYDAETLE-CVASFRITSVQAIKQI-IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKL 250 (405)
T ss_pred cceEEEEecchhe-eeeeeeechheeeeEE-EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhh
Confidence 9999999999999 9988887664458888 77889999999999999999998731100 0 111000 0112
Q ss_pred CeEEEEEecCCCCCEEEEEECC-CcEEEEeCCCCCccEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1234 RVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~D-G~I~IWDl~~~~~~v~~l~~h~-~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
.-.+++|+.+ |.+++.|+.. ..++||....| ..++.+.+.+ .....+.|||-.+.+++- ..|.|+||..
T Consensus 251 ~Wk~ccfs~d--geYv~a~s~~aHaLYIWE~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 251 QWKKCCFSGD--GEYVCAGSARAHALYIWEKSIG-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hhhheeecCC--ccEEEeccccceeEEEEecCCc-ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 3457888887 8998888743 56999999988 7999999887 567889999999999888 5689999983
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=178.87 Aligned_cols=318 Identities=14% Similarity=0.229 Sum_probs=235.5
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC-----------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------------KGTKTALLQPFSPIVVAADENERIKIWNYEED 1073 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg 1073 (1354)
.+...++++.+..|+++..|.++.+|..... .+-....|+|+++.+++-+..|..++|..++.
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 4667788888889999999999999987764 33567889999999999999999999984332
Q ss_pred ---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEe
Q 000681 1074 ---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1150 (1354)
Q Consensus 1074 ---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~s 1150 (1354)
.....+.+|. +.|+++.| .+.|.+|++.|.|.+-|++--.. ++.-.-.+..-+-|.....| +++-
T Consensus 349 ~~w~~~~~iSGH~---~~V~dv~W--~psGeflLsvs~DQTTRlFa~wg---~q~~wHEiaRPQiHGyDl~c----~~~v 416 (764)
T KOG1063|consen 349 TFWTQEPVISGHV---DGVKDVDW--DPSGEFLLSVSLDQTTRLFARWG---RQQEWHEIARPQIHGYDLTC----LSFV 416 (764)
T ss_pred cceeecccccccc---ccceeeee--cCCCCEEEEeccccceeeecccc---cccceeeeccccccccccee----eehc
Confidence 3444567888 89999999 68999999999999999987642 11111111223456666777 5554
Q ss_pred cCCCeEEEEECCCeEEEEECCCCc-------------------------------------------e------------
Q 000681 1151 QQSGYLYASGEVSSIMLWDLEKEQ-------------------------------------------Q------------ 1175 (1354)
Q Consensus 1151 p~~~~Lla~g~Dg~I~VWDl~t~~-------------------------------------------~------------ 1175 (1354)
+..-.+++|.+.+.+|+|+....- .
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 545667777788999999753100 0
Q ss_pred --------------------eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC-----eEEEEECCCCCeeeEeecCCCC
Q 000681 1176 --------------------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-----SVRLYDVRTPDMLVCSTRPHTQ 1230 (1354)
Q Consensus 1176 --------------------~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG-----sVrIwDlr~~~~~~~~~~~~~~ 1230 (1354)
.++.+.+ ++..|+++ ..+++|+++++++... .|++|+..+-... . ...+
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYG-HGyEv~~l-~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~---~L~~ 570 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYG-HGYEVYAL-AISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-Q---ELEG 570 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhcc-CceeEEEE-EecCCCCEEeehhhhCCccceEEEEEeccchhhh-h---eecc
Confidence 0001112 33358999 7788999999998754 5999998876632 2 3457
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc---EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~---v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
|.-.|+.++|+|+ |++|++.|.|.++.+|........ ....+.|..-|+++.|+|++.++||+|.|++|+||...
T Consensus 571 HsLTVT~l~FSpd--g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 571 HSLTVTRLAFSPD--GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred cceEEEEEEECCC--CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 8899999999999 999999999999999998654222 23367899999999999999999999999999999954
Q ss_pred Cc---eEEEEeccCCccccccCCCeEEEEEecCC-----CEEEEEECCCeEEEcC
Q 000681 1308 GE---QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-----VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1308 g~---~l~~i~~~h~~fl~~~~~~V~sLafspdg-----~~Lasgs~Dg~V~IWd 1354 (1354)
.. .+..+.. -.....|+.++|.|-. ..+++|-..|.|.+|.
T Consensus 649 ~~~d~~i~~~a~------~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 649 DLRDKYISRFAC------LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred Cchhhhhhhhch------hccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 33 3332211 1245789999997632 3677888899999984
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=185.04 Aligned_cols=258 Identities=17% Similarity=0.318 Sum_probs=195.6
Q ss_pred EEEEeCCCC-----CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--------CceEEEeeCCCCCCCCeEEEEEEeeCC
Q 000681 1033 IACWDTRFE-----KGTKTALLQPFSPIVVAADENERIKIWNYEE--------DTLLNSFDNHDFPDKGISKLCLVNELD 1099 (1354)
Q Consensus 1033 I~iWd~~~~-----~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t--------g~~l~~~~~h~~~~~~ItsL~f~~s~d 1099 (1354)
-+.|+.+.. .+|+.+.|++-...|++++.||.+++|+++. -+.+.+|.+|. ++|.|+++ ..+
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v--~~n 355 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVV--PSN 355 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEe--cCC
Confidence 344666543 7899999999999999999999999999932 26788999999 99999999 689
Q ss_pred CCEEEEEeCCCeEEEEEccCC------CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000681 1100 VSLLLVASCNGNIRIWKDYDQ------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1173 (1354)
Q Consensus 1100 ~~~L~tgs~DG~IrIWdl~~~------~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~ 1173 (1354)
+..+++|+-||+|+.|++..+ .....+. ..+.||...|+. +++++....|++++.||+|+.|+...+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~---~~l~Ghtdavw~----l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLS---GTLLGHTDAVWL----LALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhc---cceeccccceee----eeecccccceeeecCCceEEeeccCCc
Confidence 999999999999999966421 1111222 457889999888 899999999999999999999999887
Q ss_pred ceeeeeecCCCCC-CeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC--C--CCCCCeEEEEEecCCCCCE
Q 000681 1174 QQMVNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH--T--QQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1174 ~~~v~~i~~~~~~-~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~--~--~h~~~I~sv~fsp~~~g~~ 1248 (1354)
. . .++...... .-+++...+..-.+.++...-|.--++|...... ...+... . .....+..+.++|. +.+
T Consensus 429 ~-~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~--~~~ 503 (577)
T KOG0642|consen 429 S-P-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPT--ADI 503 (577)
T ss_pred C-c-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh-eeeccccCCCcccccCccceEEecCC--CCe
Confidence 7 4 334332222 1355544333334444444444444455444432 2222111 0 11246788899998 899
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
.+++..|+.|+++|..++ .++.....|...++++++.|+|.+|++|+.|+.|++|.++.
T Consensus 504 ~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEecccCCceeccccccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 999999999999999998 69999999999999999999999999999999999999753
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=164.93 Aligned_cols=276 Identities=14% Similarity=0.231 Sum_probs=208.3
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC-----------------------CCeEEEEEc-------CCCCEEEEEE
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------------------KGTKTALLQ-------PFSPIVVAAD 1060 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------------------~~I~sL~fs-------pdg~~Latgs 1060 (1354)
....+.+++|+.-+++...++.+++|++... ..|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4678899999999999999999999998653 335555663 5667999999
Q ss_pred CCCcEEEEECCCCceEEEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeee-ecccCCC
Q 000681 1061 ENERIKIWNYEEDTLLNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF-SSIQGHK 1137 (1354)
Q Consensus 1061 ~Dg~I~IWd~~tg~~l~~~~~h~--~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~-~~l~~h~ 1137 (1354)
.+.-|++||..+|+....+.+-. ..-....+++| ++||..|++|. ...|||+|+..........+.+ +.-.+..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F--s~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF--SPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEe--cCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccc
Confidence 99999999999999888876533 11234568999 78999999874 6799999994422222222111 1112223
Q ss_pred CCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CCeEEEEEC
Q 000681 1138 PGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1215 (1354)
Q Consensus 1138 ~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DGsVrIwDl 1215 (1354)
+.+. +++|+|... .+++++....+-||.-.... ++..+-+|.+. |+.+ .+.++|+.|.+|.. |-.|..||+
T Consensus 208 giis----c~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gG-vThL-~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 208 GIIS----CFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGG-VTHL-QWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred ceee----eeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCC-eeeE-EeccCcCeecccccCCCeEEEEee
Confidence 3333 489999876 56666777788888877777 78888887776 9999 67789999998876 678999999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000681 1216 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1216 r~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg 1295 (1354)
|....++..+..+.+....-.-....|. +++|++|+.||.|++||+......+..+..|...++.++++|--+++|++
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 9776565555444443333344555677 99999999999999999998556788888899999999999998899988
Q ss_pred eCC
Q 000681 1296 SAK 1298 (1354)
Q Consensus 1296 s~D 1298 (1354)
+..
T Consensus 359 sGq 361 (406)
T KOG2919|consen 359 SGQ 361 (406)
T ss_pred cCc
Confidence 753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=172.59 Aligned_cols=242 Identities=17% Similarity=0.269 Sum_probs=180.2
Q ss_pred CCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCceE---E------------------EeeCCCCCCCCeEEEE
Q 000681 1042 KGTKTALLQPF-------SPIVVAADENERIKIWNYEEDTLL---N------------------SFDNHDFPDKGISKLC 1093 (1354)
Q Consensus 1042 ~~I~sL~fspd-------g~~Latgs~Dg~I~IWd~~tg~~l---~------------------~~~~h~~~~~~ItsL~ 1093 (1354)
..+.|+.|... |+++|+|+.|..|.|||++-...+ . .-.+|. ..|.+|.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT---davl~Ls 250 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT---DAVLALS 250 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch---HHHHHHH
Confidence 55678888654 569999999999999998621100 0 012354 5666777
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCC
Q 000681 1094 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEK 1172 (1354)
Q Consensus 1094 f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t 1172 (1354)
| |-.-.+.|++||.|.+|++||+.+ +++.. ++..|...|.+ +.|++... .|++|+.|++|.+.|.+.
T Consensus 251 ~-n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~-----s~~~~~k~Vq~----l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 251 W-NRNFRNVLASGSADKTVKLWDVDT--GKPKS-----SITHHGKKVQT----LEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred h-ccccceeEEecCCCceEEEEEcCC--CCcce-----ehhhcCCceeE----EEecCCCceEEEeccccceEEeeeccC
Confidence 7 234567999999999999999977 55443 37789999998 99998755 567778999999999995
Q ss_pred CceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000681 1173 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1252 (1354)
Q Consensus 1173 ~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasg 1252 (1354)
....-..++. .+.|-.+++.+.....++++..||+|+-+|+|+....+...+ .|.+.|.+++++.. ....++++
T Consensus 319 ~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-TPGLLSTA 392 (463)
T ss_pred ccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-CCcceeec
Confidence 4312223332 334888877766778999999999999999998865555443 56699999999987 67899999
Q ss_pred ECCCcEEEEeCCCCCccEEEEecC---CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 000681 1253 SQAGDIQFLDIRNHKDAYLTIDAH---RGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1253 s~DG~I~IWDl~~~~~~v~~l~~h---~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~ 1306 (1354)
+.|+.|++|++.... +- ....| -+...|+++.|+-. ++|.|+..+.++|||+
T Consensus 393 s~d~~Vklw~~~~~~-~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDS-PK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccceEEEEeecCCC-Cc-ccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 999999999997652 21 11222 23467888888766 7788888889999994
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=160.24 Aligned_cols=267 Identities=15% Similarity=0.235 Sum_probs=203.0
Q ss_pred CceEEEeeCCCcEEEEeCCCC-------------------------CCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCc
Q 000681 1021 SFDLAVSKLNNPIACWDTRFE-------------------------KGTKTALLQPFS-PIVVAADENERIKIWNYEEDT 1074 (1354)
Q Consensus 1021 ~~~L~~s~~d~~I~iWd~~~~-------------------------~~I~sL~fspdg-~~Latgs~Dg~I~IWd~~tg~ 1074 (1354)
+..+++++.|+.|.+||.++. -.|.++.|-|.+ .++.+++-|.+++|||..+-+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 356888999999999999874 358888998854 488889999999999999988
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCC
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1153 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~ 1153 (1354)
....|+-.. .|.+-++.+-. ...++++|..+-.|++-|+.. |... ..+.||...|.+ +.|+|..
T Consensus 136 ~a~~F~me~----~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S--Gs~s-----H~LsGHr~~vla----V~Wsp~~ 200 (397)
T KOG4283|consen 136 EAVDFKMEG----KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--GSFS-----HTLSGHRDGVLA----VEWSPSS 200 (397)
T ss_pred eeEEeecCc----eeehhhcChhhhcceEEEEecCCCcEEEEeccC--Ccce-----eeeccccCceEE----EEeccCc
Confidence 888877554 67777763211 345788888899999999977 4443 448999999988 9999999
Q ss_pred CeEEEE-ECCCeEEEEECCCCceeeeeecCC-------------CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000681 1154 GYLYAS-GEVSSIMLWDLEKEQQMVNPIPSS-------------SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1219 (1354)
Q Consensus 1154 ~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~~~-------------~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~ 1219 (1354)
.++++. +.||.|++||+++...|...+..| +.+.|.++ ++..++.++++.+.|..+++|+..++.
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl-a~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL-AWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee-eecccchhhhhccCccceEEeecccCc
Confidence 887665 699999999999763244444322 23348888 677899999999999999999999887
Q ss_pred eeeEeecCCCCCCCCe-EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000681 1220 MLVCSTRPHTQQVERV-VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1298 (1354)
Q Consensus 1220 ~~~~~~~~~~~h~~~I-~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~D 1298 (1354)
...+.+... .|+..+ ..+..+.. ....++---.++.+.++++-.+ +.+..+..|-..|.|.++.|+-+...+|..|
T Consensus 280 ntl~~~g~~-~~n~~~~~~~~~~~~-~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 280 NTLREFGPI-IHNQTTSFAVHIQSM-DSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred ccccccccc-cccccccceEEEeec-ccceEEEEecCCeEEEEEccCc-eEEEeeecccceeeEEeecCchhhhhccccC
Confidence 544433211 111111 11112211 2455666666799999999988 7999999998899999999999999999999
Q ss_pred CcEEEEeC
Q 000681 1299 QLIKVFSL 1306 (1354)
Q Consensus 1299 g~I~Iwd~ 1306 (1354)
+.|..|-.
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-15 Score=160.87 Aligned_cols=250 Identities=21% Similarity=0.247 Sum_probs=183.2
Q ss_pred CCeEEEEEcCCCC-EEEEEECC-------CcEEEEECCCC---------ceEEEee-CCCCCCCCeEEEEEEeeCCCCEE
Q 000681 1042 KGTKTALLQPFSP-IVVAADEN-------ERIKIWNYEED---------TLLNSFD-NHDFPDKGISKLCLVNELDVSLL 1103 (1354)
Q Consensus 1042 ~~I~sL~fspdg~-~Latgs~D-------g~I~IWd~~tg---------~~l~~~~-~h~~~~~~ItsL~f~~s~d~~~L 1103 (1354)
+.|..++-+|..+ +|+|...+ ..+.||.+... +.+..+. .+- +.|.++.| .|++..|
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav---g~i~cvew--~Pns~kl 138 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV---GKINCVEW--EPNSDKL 138 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh---CceeeEEE--cCCCCee
Confidence 6688888899666 55554421 24779987643 2333333 223 58999999 6788888
Q ss_pred EEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeecC
Q 000681 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPS 1182 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~ 1182 (1354)
++-. |..|.+|++..+......+.. ..-.++....++ -.|+| ..+..+++..|+++..||+++.. +...+..
T Consensus 139 asm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~fts----g~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI~d 211 (370)
T KOG1007|consen 139 ASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTS----GAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSIED 211 (370)
T ss_pred EEec-cCceEEEEcccCcchheeecc-cccccccceecc----cccCCCCccceEEEeCCCcEEEEEccchh-hhcchhh
Confidence 8775 788999999774432221110 111223444444 78988 55666667789999999999988 8888887
Q ss_pred CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000681 1183 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1183 ~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWD 1262 (1354)
.++..|..+.+.+....+|++++.||.|++||.|..+..+. ...+|..+|.+|.|+|. ...+|++|+.|..|.+|.
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNLSC 287 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCc-cceEEEecCCCceeEEEe
Confidence 77777999966655567899999999999999998876665 44578899999999998 678999999999999997
Q ss_pred CCCCC----------------------------ccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 000681 1263 IRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1263 l~~~~----------------------------~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~ 1307 (1354)
...-. ..+.++..|...|.+++|+.-.+ ++|+-|.||.+.|=++.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 53210 23457778999999999998777 67778999999876644
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=196.32 Aligned_cols=249 Identities=18% Similarity=0.293 Sum_probs=193.8
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEECCC---C---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe
Q 000681 1042 KGTKTALLQPFSPI----VVAADENERIKIWNYEE---D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1111 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~----Latgs~Dg~I~IWd~~t---g---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~ 1111 (1354)
.+-+.|+|.+.+.. ||.|.+||.|.+||... + ..+.++..|. +.|..+.| |...+++|++|++||.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~---G~V~gLDf-N~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT---GPVLGLDF-NPFQGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC---Cceeeeec-cccCCceeeccCCCCc
Confidence 45678999887775 88889999999999864 2 4566778888 99999999 2345569999999999
Q ss_pred EEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCC-CCeE
Q 000681 1112 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSD-CSIS 1189 (1354)
Q Consensus 1112 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~~~~~-~~Vt 1189 (1354)
|.|||+...+.....- -......|.+ ++|+..-.+++++ +.+|.+.|||++..+ .+..+..+.. ..+.
T Consensus 141 I~iWDlnn~~tP~~~~-----~~~~~~eI~~----lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG-----SQAPPSEIKC----LSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCS 210 (1049)
T ss_pred EEEeccCCcCCCCCCC-----CCCCcccceE----eccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCcccee
Confidence 9999996522111100 1112344555 9999877776665 578899999999998 7777766555 3367
Q ss_pred EEEEEcCCCCEEEEEECCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000681 1190 ALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1266 (1354)
Q Consensus 1190 sl~~~s~~g~~L~sgs~DG---sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~ 1266 (1354)
.+.|.+.+-..+++++.|. .|.+||+|......+++ ++|...|.++.|++. +..++++++.|+.|.+|+.+++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCC-CchhhhcccCCCCeeEecCCCc
Confidence 7744444446677776654 59999999877666644 577899999999998 5699999999999999999998
Q ss_pred CccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCc
Q 000681 1267 KDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1267 ~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~g~ 1309 (1354)
+.+..+.....++..+.|+|... +|++++-||.|.||.+.+.
T Consensus 287 -Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 287 -EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 79999998888999999999888 8899999999999996543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-13 Score=158.50 Aligned_cols=307 Identities=24% Similarity=0.469 Sum_probs=228.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCCC------------CeEEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-Cce
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFEK------------GTKTALL-QPFSP-IVVAADE-NERIKIWNYEE-DTL 1075 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~~------------~I~sL~f-spdg~-~Latgs~-Dg~I~IWd~~t-g~~ 1075 (1354)
+....+...+..+...+.++.+.+|+...+. .+..+.+ ++++. +++..+. |+.+.+|+... ...
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 147 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE
Confidence 4555566666667777788899999987651 4666667 77777 5555444 89999999998 788
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
...+..|. ..|..+.| .+++..+++++. |+.+++|+... +... ..+.+|...+.+ ++|++++.
T Consensus 148 ~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~v~~----~~~~~~~~ 211 (466)
T COG2319 148 IRTLEGHS---ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRT--GKPL-----STLAGHTDPVSS----LAFSPDGG 211 (466)
T ss_pred EEEEecCc---ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCC--CceE-----EeeccCCCceEE----EEEcCCcc
Confidence 88899998 89999999 678888888886 99999999965 2222 335668888888 88998887
Q ss_pred eEEEE-ECCCeEEEEECCCCceeee-eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1155 YLYAS-GEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1155 ~Lla~-g~Dg~I~VWDl~t~~~~v~-~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
.++++ +.|+.|++||...+. ... .+..|... + +..+.+++..+++++.|+.+++||.+......... .+|.
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~ 284 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDS-V--VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHS 284 (466)
T ss_pred eEEEEecCCCcEEEEECCCCc-EEeeecCCCCcc-e--eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCC
Confidence 45555 899999999998777 666 57776655 2 22567788889999999999999999776423222 4667
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe--cCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCc
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~--~h~~~VtsLafspdg~~Lasg-s~Dg~I~Iwd~~g~ 1309 (1354)
..+.++.|.|. +..+++++.|+.+++||..+. ....... .|...+..+.+.+++..++.+ ..|+.+.+|+....
T Consensus 285 ~~v~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 285 SSVLSVAFSPD--GKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred ccEEEEEECCC--CCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 99999999997 778888999999999999877 3444444 787789999994332455555 68899999996544
Q ss_pred e-EEEEeccCCccccccCCCeEEEEEecCCCEEEE-EECCCeEEEcC
Q 000681 1310 Q-LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA-GSADACVSIHS 1354 (1354)
Q Consensus 1310 ~-l~~i~~~h~~fl~~~~~~V~sLafspdg~~Las-gs~Dg~V~IWd 1354 (1354)
. ...... + ..+..+.+.+ ...... +..++.+.+|+
T Consensus 362 ~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 362 KPLKTLEG-H--------SNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred ceeEEecC-C--------ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 4 222221 1 2288999988 533443 67799999985
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=155.72 Aligned_cols=297 Identities=16% Similarity=0.220 Sum_probs=202.7
Q ss_pred EeCCCCCCeEEEEEcC--CC-CEEEEEE----CCCcEEEEEC--CCCceEEEee-CCCCCCCCeEEEEEEeeCCC---CE
Q 000681 1036 WDTRFEKGTKTALLQP--FS-PIVVAAD----ENERIKIWNY--EEDTLLNSFD-NHDFPDKGISKLCLVNELDV---SL 1102 (1354)
Q Consensus 1036 Wd~~~~~~I~sL~fsp--dg-~~Latgs----~Dg~I~IWd~--~tg~~l~~~~-~h~~~~~~ItsL~f~~s~d~---~~ 1102 (1354)
+.....-++.++.|+. +. .+|+.|+ ..+.|.|-.+ ++++.+..-. .|. -+++.+.|++++.| .+
T Consensus 39 y~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 39 YTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred EEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCcch
Confidence 3344446788888874 33 3788887 3456666644 3444443322 344 68899999765543 35
Q ss_pred EEEEeCCCeEEEEEccCCCCcceEEeee--ecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCce-eee
Q 000681 1103 LLVASCNGNIRIWKDYDQKDKQKLVTAF--SSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQ-MVN 1178 (1354)
Q Consensus 1103 L~tgs~DG~IrIWdl~~~~~~~~lvs~~--~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~-~v~ 1178 (1354)
|+|++ ..+|+|.+...+...++.... ..-..+..++++ ++|+.-.. ++.+++-|-+..|||++++.. .++
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS----FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk 189 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS----FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK 189 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccc----cccccCCcceeEeecccCeEEEEEEeecccccee
Confidence 66554 379999997533333322111 112334556666 88987554 556667899999999998740 133
Q ss_pred e-ecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C
Q 000681 1179 P-IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G 1256 (1354)
Q Consensus 1179 ~-i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D-G 1256 (1354)
+ +-+| +..|..|++....-+.|++.+.||+||+||+|..+.....++.. ....+...++|++. +-+++++-..| .
T Consensus 190 TQLIAH-DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-~~~~pLlRLswnkq-DpnymATf~~dS~ 266 (364)
T KOG0290|consen 190 TQLIAH-DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-SPSTPLLRLSWNKQ-DPNYMATFAMDSN 266 (364)
T ss_pred eEEEec-CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-CCCCcceeeccCcC-CchHHhhhhcCCc
Confidence 3 3344 55599996665455789999999999999999877444444322 22478899999987 67888887766 5
Q ss_pred cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEe
Q 000681 1257 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1335 (1354)
Q Consensus 1257 ~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafs 1335 (1354)
.|.|.|+|....++..++.|.+.|+.++|.|+.. .|++++.|..+.|||+..-....... .-......+.|+.+.|+
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWS 344 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeec
Confidence 6999999998889999999999999999999865 89999999999999975322211110 00111245789999999
Q ss_pred cC-CCEEEEEEC
Q 000681 1336 PY-QVLLAAGSA 1346 (1354)
Q Consensus 1336 pd-g~~Lasgs~ 1346 (1354)
+. ...++.+..
T Consensus 345 ~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 345 SSQPDWIAICFG 356 (364)
T ss_pred ccCCCEEEEEec
Confidence 64 467777764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-13 Score=158.28 Aligned_cols=284 Identities=26% Similarity=0.500 Sum_probs=213.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-eEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeC-CCeEEEEEc
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASC-NGNIRIWKD 1117 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~-~l~~~~~h~~~~~~ItsL~f~~s~d~~-~L~tgs~-DG~IrIWdl 1117 (1354)
...+.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... ..+..+.+. ..++. .++..+. |+.+++|+.
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALS-SPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEE-CCCcceEEeccCCCCccEEEEEe
Confidence 3789999999999999999999999999999886 6777776441 367777775 56666 5555455 999999998
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
... .... ..+..|...+.. +.|++++..+++++. |+.+++|+..... .+..+..|... |.++. +.+
T Consensus 142 ~~~---~~~~---~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~-~~~ 208 (466)
T COG2319 142 STP---GKLI---RTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP-VSSLA-FSP 208 (466)
T ss_pred cCC---CeEE---EEEecCcccEEE----EEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCc-eEEEE-EcC
Confidence 540 1111 336778888886 899999998888875 9999999999877 77888876555 99994 457
Q ss_pred CCC-EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec
Q 000681 1197 HGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1197 ~g~-~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~ 1275 (1354)
++. .+++++.|+.|++||.+.+...... ..+|.... ...|+++ +..+++++.|+.+++||.+.....+..+..
T Consensus 209 ~~~~~~~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 209 DGGLLIASGSSDGTIRLWDLSTGKLLRST---LSGHSDSV-VSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred CcceEEEEecCCCcEEEEECCCCcEEeee---cCCCCcce-eEeECCC--CCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 887 5555599999999998866533212 33444554 3389998 688999999999999999977433555567
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-eEEEEe--ccCCccccccCCCeEEEEEecCCCEEEEE-ECCCeEE
Q 000681 1276 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE-QLGTIR--YHHPSFMAQKIGSVNCLTFHPYQVLLAAG-SADACVS 1351 (1354)
Q Consensus 1276 h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~-~l~~i~--~~h~~fl~~~~~~V~sLafspdg~~Lasg-s~Dg~V~ 1351 (1354)
|...|.++.|+|++..+++++.|+.+.+|+.... ...... . |. ..+..+.|.+++..++.+ ..|+.+.
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HE-------GPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc-cC-------CceEEEEECCCCCEEEEeecCCCcEE
Confidence 8899999999998888888999999999986543 333333 3 43 478999994333566666 5788888
Q ss_pred EcC
Q 000681 1352 IHS 1354 (1354)
Q Consensus 1352 IWd 1354 (1354)
+|+
T Consensus 355 ~~~ 357 (466)
T COG2319 355 LWD 357 (466)
T ss_pred eee
Confidence 875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-14 Score=148.06 Aligned_cols=277 Identities=13% Similarity=0.206 Sum_probs=193.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCC----------CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEE----------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~t----------g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
|.+-+++|.+++|++|..+|.|.+..+.+ ...+-.+++|. ++|..++| ...+|++|++ |.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f----~d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAF----HDDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeee----ehhheeeccC-ceEE
Confidence 34456889999999999999999998753 13455568888 99999999 3567777765 9999
Q ss_pred EEEccCCCCcceEEeeeec-ccCC-----CCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000681 1114 IWKDYDQKDKQKLVTAFSS-IQGH-----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~-l~~h-----~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~ 1187 (1354)
-|..........+...|+. .+-| -+.|++ +-..|..+.++.++.|+.++-||+++++ ..+++++|++-
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINa----m~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDY- 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINA----MWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDY- 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccce----eEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcce-
Confidence 9987542221111111111 1112 234455 6667888888888899999999999999 99999999887
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC-------CCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-------QQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~-------~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~I 1260 (1354)
|.++ ........+++|+.||++|+||.++.+. +..+...+ .-..+|-+++.+. ..+++|+. ..+.+
T Consensus 159 vH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~e----dWlvCGgG-p~lsl 231 (325)
T KOG0649|consen 159 VHSV-VGRNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE----DWLVCGGG-PKLSL 231 (325)
T ss_pred eeee-eecccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEeccC----ceEEecCC-CceeE
Confidence 9999 5545566889999999999999999883 44432221 1235788888764 47877764 57999
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC-C
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-V 1339 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg-~ 1339 (1354)
|.++.. ++..++.. ...+..+.|.. ..+++++..+.|.-|.+.|..-..+...+ ...++..|+..- +
T Consensus 232 whLrss-e~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s--------~~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 232 WHLRSS-ESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVES--------TACYSASWQTSPIK 299 (325)
T ss_pred EeccCC-CceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCc--------cceeeecccCCceE
Confidence 999987 67776653 45688888865 46777777788999999987766665412 234444444332 3
Q ss_pred EEEEEECCCeEEEc
Q 000681 1340 LLAAGSADACVSIH 1353 (1354)
Q Consensus 1340 ~Lasgs~Dg~V~IW 1353 (1354)
++-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 45555556666654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=161.01 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=207.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
++|.++.|+.++++|++|++|..+++|+++.. +.+. +.+|. ..+.|.+++| ...+..+++|+.+|+|...
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~-H~SNIF~L~F--~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHP-HRSNIFSLEF--DLENRFLYSGERWGTVIKH 132 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCc-cccceEEEEE--ccCCeeEecCCCcceeEee
Confidence 68999999999999999999999999998743 3333 22322 1278999999 6788899999999999999
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeecCCCCCCeEEEEEE
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v-~~i~~~~~~~Vtsl~~~ 1194 (1354)
|+.+. ....+ ..-....+.|+. +.-+|..+.+++.+.+|.|.+||.+...... -.+.+.......++.+.
T Consensus 133 DiEt~--qsi~V---~~~~~~~~~VY~----m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 133 DIETK--QSIYV---ANENNNRGDVYH----MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH 203 (609)
T ss_pred ecccc--eeeee---ecccCcccceee----cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence 99762 11111 111223346776 7888999999999999999999998654111 22333334445666466
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCC---CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEE
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ---QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~---h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~ 1271 (1354)
+....+|++.+..|-+-+||+|.....+.......+ ....-.++.|+|+ |..|.+--....-.+||+-+...++.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~--G~Q~msiRR~~~P~~~D~~S~R~~V~ 281 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS--GNQFMSIRRGKCPLYFDFISQRCFVL 281 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC--CCeehhhhccCCCEEeeeecccceeE
Confidence 667789999999999999999987654433322221 1223367889999 88888877666677888877544444
Q ss_pred EEecCC-------CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC------C-ceEEE----------EeccCCccccccCC
Q 000681 1272 TIDAHR-------GSLSALAVHRHAPIIASGSAKQLIKVFSLE------G-EQLGT----------IRYHHPSFMAQKIG 1327 (1354)
Q Consensus 1272 ~l~~h~-------~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~------g-~~l~~----------i~~~h~~fl~~~~~ 1327 (1354)
.+. |. ..|.+++|-.+- -+++|+.+-.|++|.+. | .++.. +.. .-..+.+|.+
T Consensus 282 k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~-~~~VLrGHRS 358 (609)
T KOG4227|consen 282 KSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK-ELTVLRGHRS 358 (609)
T ss_pred ecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc-eeEEEecccc
Confidence 443 22 257778887654 49999999999999853 1 00100 000 0001334568
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1328 SVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1328 ~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.++.+.|+|+..+|++.+....++||+
T Consensus 359 v~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 359 VPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccceeecCCcceEeccchhhheeccc
Confidence 899999999999999999999999995
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=161.79 Aligned_cols=291 Identities=15% Similarity=0.249 Sum_probs=207.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000681 1040 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED---------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1109 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg---------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D 1109 (1354)
...++.++.|+++.. .++||+.|..|+||.++.+ +.+..+..|. ..|+.+.| +++|++|++|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~---~aVN~vRf--~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT---RAVNVVRF--SPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc---ceeEEEEE--cCCcCeeeecCCC
Confidence 557999999999877 9999999999999977643 2344566787 89999999 7899999999999
Q ss_pred CeEEEEEccCC-----CC----cceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee
Q 000681 1110 GNIRIWKDYDQ-----KD----KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1180 (1354)
Q Consensus 1110 G~IrIWdl~~~-----~~----~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i 1180 (1354)
|.|.+|..... +. ..+....++.+.+|...+.. ++|++++..+++++-|..+++||+..+. ....+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd----L~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD----LAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAIL 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh----hhccCCCceeeeeeccceEEEEEeccce-eEeec
Confidence 99999987510 01 01112233567889999998 9999999999999999999999999999 77777
Q ss_pred cCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE----eecC--CCC---------C----CCCeEEEEEe
Q 000681 1181 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC----STRP--HTQ---------Q----VERVVGISFQ 1241 (1354)
Q Consensus 1181 ~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~----~~~~--~~~---------h----~~~I~sv~fs 1241 (1354)
..|... |..+ .+.+.++++++-+.|...+.+++...+.... .+.. ..+ | ..-...++|+
T Consensus 162 ~dh~~y-vqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT 239 (434)
T KOG1009|consen 162 DDHEHY-VQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT 239 (434)
T ss_pred cccccc-ccee-ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence 776555 8888 7778899999999888777777664431111 1100 000 1 1123467888
Q ss_pred cCCCCCEEEEEEC----CCc-----EEEEeCCCCCccEEEEecCCCCeEEEEEcC------------------CCCEEEE
Q 000681 1242 PGLDPAKIVSASQ----AGD-----IQFLDIRNHKDAYLTIDAHRGSLSALAVHR------------------HAPIIAS 1294 (1354)
Q Consensus 1242 p~~~g~~Lasgs~----DG~-----I~IWDl~~~~~~v~~l~~h~~~VtsLafsp------------------dg~~Las 1294 (1354)
|+ |..+++.+. .|. .++|+-...+.+...+.....++..+.|+| .+.++|.
T Consensus 240 Pd--G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 240 PD--GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred CC--CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 98 888887642 222 355554443455555555555555555543 3446666
Q ss_pred EeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1295 GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1295 gs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
++. ..|.|||.+ -.++..+.+- |-..|++++|+++|..|+..+.||...+
T Consensus 318 At~-~svyvydtq~~~P~~~v~ni-------hy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 318 ATK-NSVYVYDTQTLEPLAVVDNI-------HYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eec-ceEEEeccccccceEEEeee-------eeeeecceeecCCCcEEEEeccCCceEE
Confidence 665 469999954 3444444331 2378999999999999999999997543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=157.87 Aligned_cols=287 Identities=15% Similarity=0.202 Sum_probs=203.9
Q ss_pred CCeEEEEEcC----CC-CEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEeCCCe
Q 000681 1042 KGTKTALLQP----FS-PIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVASCNGN 1111 (1354)
Q Consensus 1042 ~~I~sL~fsp----dg-~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~ItsL~f~~s~--d~~~L~tgs~DG~ 1111 (1354)
.+|..++|++ ++ ..+++++ ...+.+|..... ..++.+.... .......++|.-.. ...+|++||.-|.
T Consensus 39 ~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d-~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 39 KPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADED-HDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCC-CCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 5788888875 22 3555555 678999988743 3344443322 22566677775332 2568899999999
Q ss_pred EEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCCCCC
Q 000681 1112 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSDCS 1187 (1354)
Q Consensus 1112 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~---~~~~~~ 1187 (1354)
|||.|+.. + ++. +.+.+|...|.. +.++|... ++++++.|..||+||++++. |+..+- +|.+.
T Consensus 117 IrVid~~~--~--~~~---~~~~ghG~sINe----ik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrde- 183 (385)
T KOG1034|consen 117 IRVIDVVS--G--QCS---KNYRGHGGSINE----IKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDE- 183 (385)
T ss_pred EEEEecch--h--hhc---cceeccCccchh----hhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCc-
Confidence 99999965 2 222 457899999998 78888764 56677899999999999999 998875 45555
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCe---e---------------------eEeecCCCCCCCCeEEEEEecC
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM---L---------------------VCSTRPHTQQVERVVGISFQPG 1243 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~---~---------------------~~~~~~~~~h~~~I~sv~fsp~ 1243 (1354)
|.++ -++.+|.++++++.|.++++|++...+- + .-.+.+..-|...|.|+.|-
T Consensus 184 VLSv-D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 184 VLSV-DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred EEEE-EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 9999 6778999999999999999999984320 0 00111222356667777764
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCc-------------cEEEEecCCCCeEEE--EEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1244 LDPAKIVSASQAGDIQFLDIRNHKD-------------AYLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1244 ~~g~~Lasgs~DG~I~IWDl~~~~~-------------~v~~l~~h~~~VtsL--afspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
|+++++-|-++.|..|....-++ .+..+......|+-+ +|.+.+++||.|...|.|.+||++.
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 67999999999999998722111 223333334445544 5577788999999999999999764
Q ss_pred ce---EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1309 EQ---LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1309 ~~---l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.. ..++.. + .....|...+|+.||..|+...+|++|--||
T Consensus 339 ~ep~~~ttl~~-s-----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 339 NEPPKCTTLTH-S-----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCccCceEEe-c-----cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 32 233332 2 2357899999999999999999999998886
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=152.82 Aligned_cols=275 Identities=21% Similarity=0.315 Sum_probs=184.7
Q ss_pred CCCcEEEEECCCC--ceEE-EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-------CeEEEEEccCCCCc-----ce
Q 000681 1061 ENERIKIWNYEED--TLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVASCN-------GNIRIWKDYDQKDK-----QK 1125 (1354)
Q Consensus 1061 ~Dg~I~IWd~~tg--~~l~-~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D-------G~IrIWdl~~~~~~-----~~ 1125 (1354)
.|+.|.+.+++.+ .... .|.-+. +.|..++-.| .+.++|+|+..+ -.+.||.+....+. .+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~a---gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHA---GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCC---cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 4566776665543 2222 233344 6788877742 466677766542 23679999664333 12
Q ss_pred EEeeeeccc-CCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC----CCeEEEEEEc-CCCC
Q 000681 1126 LVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD----CSISALTASQ-VHGG 1199 (1354)
Q Consensus 1126 lvs~~~~l~-~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~----~~Vtsl~~~s-~~g~ 1199 (1354)
.+ ..+. .+-+.+.| +.|.|++..+++-. |..|.+|++......+..+..... ...++-++.+ .+|+
T Consensus 114 ~v---~~Ldteavg~i~c----vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 114 CV---ASLDTEAVGKINC----VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred Hh---hcCCHHHhCceee----EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 21 2222 33446666 99999888877655 788999999877622444432211 1244443333 2455
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCC
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1279 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~ 1279 (1354)
.+++ ..|+++..||+|+.++... ....|...|..+.|+|+ ...+|++|+.||.|+|||.|+.+.++.++.+|...
T Consensus 186 qv~t-t~d~tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 186 QVAT-TSDSTLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred eEEE-eCCCcEEEEEccchhhhcc---hhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 5554 5689999999998774443 33467789999999999 77899999999999999999988999999999999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEeC---CCceEEEEe-------c-----cC----Ccc---ccccCCCeEEEEEec
Q 000681 1280 LSALAVHR-HAPIIASGSAKQLIKVFSL---EGEQLGTIR-------Y-----HH----PSF---MAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1280 VtsLafsp-dg~~Lasgs~Dg~I~Iwd~---~g~~l~~i~-------~-----~h----~~f---l~~~~~~V~sLafsp 1336 (1354)
|+++.|+| +.++|.+||.|..|.+|.. ..++...+. . .+ .+. ...|...|.+++|+.
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 99999998 4568999999999999972 211111000 0 00 000 124668999999998
Q ss_pred CCCE-EEEEECCCeEEE
Q 000681 1337 YQVL-LAAGSADACVSI 1352 (1354)
Q Consensus 1337 dg~~-Lasgs~Dg~V~I 1352 (1354)
-... +|+-+-||+|.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 7765 566677999876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=157.51 Aligned_cols=246 Identities=15% Similarity=0.241 Sum_probs=181.0
Q ss_pred CCeEEEEEcCC----CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 000681 1042 KGTKTALLQPF----SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1117 (1354)
Q Consensus 1042 ~~I~sL~fspd----g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl 1117 (1354)
..-..++|+-+ ..++|+|+.-|.|+|.|+.+++....+.+|. ..|+.+.+.+ .+.+++++++.|..||+|++
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p-~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHP-DRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC---ccchhhhcCC-CCCcEEEEecCCceEEEEec
Confidence 44566677542 4589999999999999999999999999999 9999999963 56789999999999999999
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeee---------------ecC
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP---------------IPS 1182 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~---------------i~~ 1182 (1354)
.+ . ..+.-+..+.+|...|.+ ++|+.++.+++++|.|.+|++|++...+ .... ++.
T Consensus 166 ~~--~--~Cv~VfGG~egHrdeVLS----vD~~~~gd~i~ScGmDhslk~W~l~~~~-f~~~lE~s~~~~~~~t~~pfpt 236 (385)
T KOG1034|consen 166 QT--D--VCVAVFGGVEGHRDEVLS----VDFSLDGDRIASCGMDHSLKLWRLNVKE-FKNKLELSITYSPNKTTRPFPT 236 (385)
T ss_pred cC--C--eEEEEecccccccCcEEE----EEEcCCCCeeeccCCcceEEEEecChhH-HhhhhhhhcccCCCCccCcCCc
Confidence 66 3 344446778899999988 9999999999999999999999998433 1100 100
Q ss_pred ------------CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECC-CCCe---------eeEeecCCCCCCCCe--EEE
Q 000681 1183 ------------SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR-TPDM---------LVCSTRPHTQQVERV--VGI 1238 (1354)
Q Consensus 1183 ------------~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr-~~~~---------~~~~~~~~~~h~~~I--~sv 1238 (1354)
-+...|-|+.++ |+++++=+.++.|..|..- -++. ....+..+.-....| ...
T Consensus 237 ~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 237 PKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 011123344332 6889998999999999872 1111 111111111112333 445
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccE-EEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY-LTIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v-~~l~~--h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+|.|. ++.||.|...|.|.+||++....+. .++.. ....|...+|+.||.+|+..+.|++|.-||
T Consensus 314 ~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 314 AFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 56677 8999999999999999999874322 22221 245789999999999999999999999998
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-14 Score=169.81 Aligned_cols=272 Identities=16% Similarity=0.193 Sum_probs=194.6
Q ss_pred CcEEEEECCCC-ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcc
Q 000681 1063 ERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1141 (1354)
Q Consensus 1063 g~I~IWd~~tg-~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~ 1141 (1354)
+.+.||++... .....+... ..|++++|++ .+..+++.|+.+|.|.+||+...........+ .....|..++.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeE
Confidence 47999999866 444444443 4899999963 68889999999999999999774332111100 11234566666
Q ss_pred cceeEEEEecCCCe--EEEEECCCeEEEEECCCCceeeeee----cC------CCCCCeEEEEEEcCCCCEEEEEECCCe
Q 000681 1142 CSNVVVDWQQQSGY--LYASGEVSSIMLWDLEKEQQMVNPI----PS------SSDCSISALTASQVHGGQLAAGFVDGS 1209 (1354)
Q Consensus 1142 si~~~v~~sp~~~~--Lla~g~Dg~I~VWDl~t~~~~v~~i----~~------~~~~~Vtsl~~~s~~g~~L~sgs~DGs 1209 (1354)
. +.|.++... +++++.||.|..|+++.-..++... .. .....++++.+...+.+.|++|+.+|.
T Consensus 296 ~----vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 296 A----VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred E----EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 5 888776655 9999999999999887543111111 11 223358899888888899999999999
Q ss_pred EEEEECCCCCeee----EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEE
Q 000681 1210 VRLYDVRTPDMLV----CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1285 (1354)
Q Consensus 1210 VrIwDlr~~~~~~----~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLaf 1285 (1354)
|.--+........ .....+..|.+.|+++.++|- +..++..+.|.+|+||.......++..+..+...|++++|
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 8874443322112 222245567899999999998 4444444449999999988333688888888888999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEeCCC---ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1286 HRHAP-IIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1286 spdg~-~Lasgs~Dg~I~Iwd~~g---~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
||..+ +|+++..||.|.|||+.. .++.+.+. + ....+.+.|++.|+.|++|...|++.+|+
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-~-------~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-C-------SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccc-c-------ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 99876 888999999999999543 33444433 2 35678888999999999999999999984
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-14 Score=163.84 Aligned_cols=263 Identities=17% Similarity=0.214 Sum_probs=197.2
Q ss_pred cCCCCceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCc-----------
Q 000681 1017 RSCNSFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSP--IVVAADENERIKIWNYEEDT----------- 1074 (1354)
Q Consensus 1017 ~~~~~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~--~Latgs~Dg~I~IWd~~tg~----------- 1074 (1354)
-.+-+..|++++.||++++|.+.++ ..|.|++|+|.+. .||++-.+ .+.|-+..-|.
T Consensus 408 vdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell 486 (733)
T KOG0650|consen 408 VDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELL 486 (733)
T ss_pred ecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhh
Confidence 3445677999999999999999987 7799999999776 55555433 34444432220
Q ss_pred --------------------------eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcce
Q 000681 1075 --------------------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQK 1125 (1354)
Q Consensus 1075 --------------------------~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~ 1125 (1354)
-++..-.|. ..|+.|.| ...|.||+|...+ ..|.|+++.. ...+
T Consensus 487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~---k~i~~vtW--HrkGDYlatV~~~~~~~~VliHQLSK--~~sQ 559 (733)
T KOG0650|consen 487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP---KSIRQVTW--HRKGDYLATVMPDSGNKSVLIHQLSK--RKSQ 559 (733)
T ss_pred hcCCCccCCcccceeechhhhhhhccceEEEEecC---Cccceeee--ecCCceEEEeccCCCcceEEEEeccc--cccc
Confidence 011122233 57889999 5799999998654 5688888854 2222
Q ss_pred EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE
Q 000681 1126 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1205 (1354)
Q Consensus 1126 lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs 1205 (1354)
.+| ....+.+.+ +.|+|...++++++. ..|+|||+.... .++.+...... |.++ ..++.|..++.|+
T Consensus 560 --~PF---~kskG~vq~----v~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg~kw-iS~m-sihp~GDnli~gs 626 (733)
T KOG0650|consen 560 --SPF---RKSKGLVQR----VKFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTGSKW-ISSM-SIHPNGDNLILGS 626 (733)
T ss_pred --Cch---hhcCCceeE----EEecCCCceEEEEec-cceEEEehhHHH-HHHHHhcCCee-eeee-eecCCCCeEEEec
Confidence 222 222333444 899999999998875 469999999987 78888776666 8888 7788999999999
Q ss_pred CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC------C--CccEEEEecCC
Q 000681 1206 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN------H--KDAYLTIDAHR 1277 (1354)
Q Consensus 1206 ~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~------~--~~~v~~l~~h~ 1277 (1354)
.|+.+..||+.-.....+ ...-|...+++|+||+. -.+|++|+.||++.|+--.- . -.+++.+++|.
T Consensus 627 ~d~k~~WfDldlsskPyk---~lr~H~~avr~Va~H~r--yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYK---TLRLHEKAVRSVAFHKR--YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred CCCeeEEEEcccCcchhH---Hhhhhhhhhhhhhhccc--cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999987664555 44456799999999998 99999999999999885321 1 14567888886
Q ss_pred CC----eEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1278 GS----LSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1278 ~~----VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.. |..+.|||...+|.+++.||+|++|.
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEeeC
Confidence 54 88999999999999999999999983
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=155.45 Aligned_cols=285 Identities=18% Similarity=0.222 Sum_probs=194.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~-h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
..++++.|..++. |.+|...|.|++|++.+...+..+.. +. ..|+.+.-+ .+..|.+-+.|+.+.+|++..
T Consensus 15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~---~~it~lq~~---p~d~l~tqgRd~~L~lw~ia~- 86 (323)
T KOG0322|consen 15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR---LFITNLQSI---PNDSLDTQGRDPLLILWTIAY- 86 (323)
T ss_pred chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc---ceeeceeec---CCcchhhcCCCceEEEEEccC-
Confidence 5688888877765 88999999999999999988888884 44 678888874 347889999999999999854
Q ss_pred CCcceEEeeeecccCCCCCcccceeE-EEEecCCC---eEEEE-EC-CCeEEEEECCCCceeeeeecCC---CCCCeEEE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQQSG---YLYAS-GE-VSSIMLWDLEKEQQMVNPIPSS---SDCSISAL 1191 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~-v~~sp~~~---~Lla~-g~-Dg~I~VWDl~t~~~~v~~i~~~---~~~~Vtsl 1191 (1354)
+.. +..|.-.+.+++++ ....+... .++.. +. ...+.+-|..... .+...... ....+.+.
T Consensus 87 -s~~--------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 87 -SAF--------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred -cce--------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeee
Confidence 111 12233333443332 11111111 12222 10 0113333433332 22222211 12236666
Q ss_pred EEEcCCCC--EEEEEECCCeEEEEECCCCCeeeEee------cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000681 1192 TASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCST------RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1192 ~~~s~~g~--~L~sgs~DGsVrIwDlr~~~~~~~~~------~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
.+...++. .+++|..+|.|.+||+.++...+... .....|..+|.++.+.+. ...=++|+.+..+..|.+
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLVMYSL 234 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccceeeee
Confidence 42223333 56789999999999999875333221 133468899999999877 555577888888999988
Q ss_pred CCCC--ccE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000681 1264 RNHK--DAY-LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1264 ~~~~--~~v-~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
.... -.+ .++...+-.|..+.+-||++++||++.|+.|+||+ .+..++..+++ |. +.|++++|+|+..
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hs-------agvn~vAfspd~~ 306 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HS-------AGVNAVAFSPDCE 306 (323)
T ss_pred ccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hh-------cceeEEEeCCCCc
Confidence 6431 111 22223345689999999999999999999999999 77899999999 75 8899999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000681 1340 LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1340 ~Lasgs~Dg~V~IWd 1354 (1354)
++|+++.|++|.+|+
T Consensus 307 lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 307 LMAAASKDARISLWK 321 (323)
T ss_pred hhhhccCCceEEeee
Confidence 999999999999996
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-15 Score=176.62 Aligned_cols=270 Identities=17% Similarity=0.278 Sum_probs=208.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|.|..|...|.++++|++|..|+||..+++.++....+|. +.|++++. +.+..++++++.|..|++|.+..
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~-- 263 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPD-- 263 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc---cccchhcc--chhhhhhhhcccCceEEEEecCC--
Confidence 468999999999999999999999999999999999999999 99999999 67888999999999999999966
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeee---eecCCCCCCeEEEEEEcCCC
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN---PIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~---~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
+... ..+.+|++.|++ ++|+|-. +++.||++++||.+-.. .+. ......+..+.++ .+...+
T Consensus 264 ~~pv-----svLrghtgavta----iafsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~-~~~~~~ 328 (1113)
T KOG0644|consen 264 GAPV-----SVLRGHTGAVTA----IAFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSI-LFENNG 328 (1113)
T ss_pred CchH-----HHHhccccceee----eccCccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeee-eccccc
Confidence 4333 348999999998 8888865 67899999999998222 111 1112223335666 566778
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~ 1278 (1354)
..+.+|+.|+.-+.|...... .+...+.-+..+.+ ...+.+++-.+-.+++|++.++ ...+.+.+|..
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd-~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd 396 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSD-LSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSD 396 (1113)
T ss_pred cccccccCCcccccchhhHhh----------hhccceEEEecccc-ccccceeeeeeeEeeeeecccc-hhhhhhccccc
Confidence 899999999998888765322 11112222222222 2356777778888999999998 68888999999
Q ss_pred CeEEEEEcCCCCEE-EEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1279 SLSALAVHRHAPII-ASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1279 ~VtsLafspdg~~L-asgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
.+..+.+||-...+ .+++.||...||| ..|.+++.....| +.+..-+|+++|..++....-|.+.|.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh--------~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH--------GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc--------ceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999987755 5779999999999 5676666543313 567788999999988887777877765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-12 Score=148.53 Aligned_cols=266 Identities=10% Similarity=0.142 Sum_probs=172.5
Q ss_pred EEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CceEEEeeCCCCCCCCeE
Q 000681 1025 AVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAAD-ENERIKIWNYEE-DTLLNSFDNHDFPDKGIS 1090 (1354)
Q Consensus 1025 ~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs-~Dg~I~IWd~~t-g~~l~~~~~h~~~~~~It 1090 (1354)
++...++.|.+||..++ ..+..+.++|++++|++++ .++.|.+|+++. ++. ....... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-CCCCce
Confidence 33455778999998532 4577889999999887765 578999999873 332 2222111 113566
Q ss_pred EEEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEE
Q 000681 1091 KLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLW 1168 (1354)
Q Consensus 1091 sL~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VW 1168 (1354)
.+.| ++++++|++++. ++.|.+|++.+.....+.+ ..+.+. ....+ +.++|+++++++++ .++.|.+|
T Consensus 84 ~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~---~~~~~~-~~~~~----~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 84 HIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPI---QIIEGL-EGCHS----ANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred EEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCce---eeccCC-CcccE----eEeCCCCCEEEEeeCCCCEEEEE
Confidence 8888 689998888764 8899999985421111111 112221 22233 67899999998776 67999999
Q ss_pred ECCCCceeee-----eecCCCCCCeEEEEEEcCCCCEEEEEEC-CCeEEEEECCCC--C-eeeEeecCCC---CCCCCeE
Q 000681 1169 DLEKEQQMVN-----PIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTP--D-MLVCSTRPHT---QQVERVV 1236 (1354)
Q Consensus 1169 Dl~t~~~~v~-----~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DGsVrIwDlr~~--~-~~~~~~~~~~---~h~~~I~ 1236 (1354)
|+.+.. .+. .+....+.....+ .++++|++++++.. +++|.+||+... + .......... .+.....
T Consensus 154 d~~~~g-~l~~~~~~~~~~~~g~~p~~~-~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 154 TLSDDG-HLVAQEPAEVTTVEGAGPRHM-VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred EECCCC-cccccCCCceecCCCCCCceE-EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 998643 221 1121223335677 67889999888776 999999999742 2 1222221111 1122345
Q ss_pred EEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCcc---EEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 000681 1237 GISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLE 1307 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~-DG~I~IWDl~~~~~~---v~~l~~h~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd~~ 1307 (1354)
.+.++|+ +++++++.. ++.|.+|++...... +..+.. ......+.++|+|++|++++. +++|.+|+++
T Consensus 232 ~i~~~pd--g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 232 DIHITPD--GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEECCC--CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6889999 888888864 689999999654222 222221 124568999999998887765 8999999864
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-13 Score=162.30 Aligned_cols=267 Identities=12% Similarity=0.191 Sum_probs=182.8
Q ss_pred cEEEEeCCCC----------CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCce--EEEe----eCCCCCCCCeEEEEE
Q 000681 1032 PIACWDTRFE----------KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL--LNSF----DNHDFPDKGISKLCL 1094 (1354)
Q Consensus 1032 ~I~iWd~~~~----------~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~--l~~~----~~h~~~~~~ItsL~f 1094 (1354)
.+.+|+.+.. ..|++++|+|... +++.|..+|.|.+||+..+.. ...+ ..|. ..++.+.|
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~---~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS---EPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC---cCeEEEEE
Confidence 5788999875 7899999999665 777888999999999987655 3222 2355 78999999
Q ss_pred EeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc-cCCCCCcccceeEEEEecCC-CeEEEEECCCeEEEEECCC
Q 000681 1095 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEK 1172 (1354)
Q Consensus 1095 ~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~~h~~~V~si~~~v~~sp~~-~~Lla~g~Dg~I~VWDl~t 1172 (1354)
..+..+.-+++++.||.|..|++..-....+....-... .+....-...+.+++|.+.. ..+++|+++|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 876666779999999999999885421111111000000 01111111223447887754 4577778899988744332
Q ss_pred Cce-e------eeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000681 1173 EQQ-M------VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1173 ~~~-~------v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~ 1245 (1354)
.+. . +.....| ..+|+++...+-....|++++ |.+|+||.......+...+. .+...|++++|+|. .
T Consensus 380 ~~~~~~~~~~~~~~~~~h-~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~---~~~~~v~~vaWSpt-r 453 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITH-IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLD---SSPDYVTDVAWSPT-R 453 (555)
T ss_pred Cccccccccccccccccc-CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhh---hccceeeeeEEcCc-C
Confidence 220 1 2233333 345999944333344455554 99999999874333433332 33467999999998 6
Q ss_pred CCEEEEEECCCcEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1246 g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
...|+++..||.|.+||+.... .++.+...+....+.+.|++.|++|++|...|.+.+|++.
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 7899999999999999997532 5666766666778888999999999999999999999974
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=162.78 Aligned_cols=291 Identities=16% Similarity=0.251 Sum_probs=215.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~-~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
++|..|.|+..|..|++|++|..|.+|||..++....|. +|. ..|..-+|++..+...+++++.||.|++=.+...
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~---~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC---NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccc---cchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 679999999999999999999999999999988777665 566 6777778988888999999999999998776442
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCCC--CCeEEEEEE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSD--CSISALTAS 1194 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~Lla~g~Dg~I~VWDl~t~~~~v~~i~---~~~~--~~Vtsl~~~ 1194 (1354)
+..+-. +.+..|.+.|.. ++..|... .++++|.|+.+.-+|++.+. ....+. .+.. -...+++..
T Consensus 220 -~~~e~t---~rl~~h~g~vhk----lav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 220 -GYVENT---KRLAPHEGPVHK----LAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred -cceecc---eecccccCccce----eeecCCCCCcccccccccceeeeeeccCC-ccceeeeeccCCccceeeeeEecC
Confidence 222212 345678888877 55556554 47778999999999998775 333322 2222 135677556
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCee-----eEeecCC---CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDML-----VCSTRPH---TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1266 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~-----~~~~~~~---~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~ 1266 (1354)
+.+.+.+++|+.|-.+++||.|.-... +..+..+ ......|++++++.+ +..+.+...|-.|+++.-..+
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC--ccceeeeecccceEEeccccc
Confidence 666779999999999999999853311 1111111 122457999999987 677777778889999964432
Q ss_pred C-----------ccE-EEEecCCC--CeEEEEE-cCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeE
Q 000681 1267 K-----------DAY-LTIDAHRG--SLSALAV-HRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN 1330 (1354)
Q Consensus 1267 ~-----------~~v-~~l~~h~~--~VtsLaf-spdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~ 1330 (1354)
. ..+ ..+++|.. .|.++.| -|...++++||.=|.|.||+. +++.+..+++ ....|+
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg--------Dr~VVN 440 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG--------DRHVVN 440 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc--------ccceEe
Confidence 1 112 23778854 5777765 577889999999999999995 4555555544 234899
Q ss_pred EEEEecCCCEEEEEECCCeEEEcC
Q 000681 1331 CLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1331 sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
||.=||.-.+||++|-|..|+||.
T Consensus 441 CLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 441 CLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ccCCCCCCchhhccCCccceeeec
Confidence 999999999999999999999994
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=149.81 Aligned_cols=217 Identities=15% Similarity=0.267 Sum_probs=162.5
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG- 1154 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~- 1154 (1354)
.-.+.+|. +.|.++.|.+ .+...|++||+|-+|.||++....-...+..+...+.+|...|.. +.|+|...
T Consensus 74 ~P~v~GHt---~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~----V~wHPtA~N 145 (472)
T KOG0303|consen 74 YPLVCGHT---APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL----VQWHPTAPN 145 (472)
T ss_pred CCCccCcc---ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE----Eeecccchh
Confidence 33467888 8999999964 678899999999999999996643333444455678899988876 99999855
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
.|+++|.|.+|.+||+.++. .+.++. |.+. |+++ .++.+|.++++.+.|..|||||.|+++ ++..-..|.| ..
T Consensus 146 VLlsag~Dn~v~iWnv~tge-ali~l~-hpd~-i~S~-sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG--~k 218 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGE-ALITLD-HPDM-VYSM-SFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEG--AK 218 (472)
T ss_pred hHhhccCCceEEEEeccCCc-eeeecC-CCCe-EEEE-EeccCCceeeeecccceeEEEcCCCCc-EeeecccccC--CC
Confidence 56677999999999999999 677776 5555 9999 788899999999999999999999998 4433334544 23
Q ss_pred eEEEEEecCCCCCEEEEEE---CCCcEEEEeCCCCCccEE--EEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 000681 1235 VVGISFQPGLDPAKIVSAS---QAGDIQFLDIRNHKDAYL--TIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs---~DG~I~IWDl~~~~~~v~--~l~~h~~~VtsLafspdg~~L-asgs~Dg~I~Iwd~~g 1308 (1354)
-..+.|-.+ |.++.||- .+..+-+||..+..+++. ++.. ...|.---+.++..++ ++|-.|+.|+-|.++.
T Consensus 219 ~~Raifl~~--g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 219 PARAIFLAS--GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred cceeEEecc--CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 445566666 77555554 467899999887655543 3332 3345555567877755 4566799999999876
Q ss_pred ce
Q 000681 1309 EQ 1310 (1354)
Q Consensus 1309 ~~ 1310 (1354)
+.
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 65
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=163.33 Aligned_cols=272 Identities=14% Similarity=0.158 Sum_probs=186.9
Q ss_pred EECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEE
Q 000681 1068 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1147 (1354)
Q Consensus 1068 Wd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1147 (1354)
|+.. |..+..+..|. ..|..++.. ++++.++++||+||+||||+.....+......+-.++.-....+.+ +
T Consensus 1034 W~p~-G~lVAhL~Ehs---~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~----v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS---SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK----V 1104 (1431)
T ss_pred CCcc-ceEeehhhhcc---ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE----E
Confidence 7665 78888888888 778888874 5667999999999999999997644443222222223323444554 6
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCc------eeeeeecCCCCCCeEEEEEEcC-CCC-EEEEEECCCeEEEEECCCCC
Q 000681 1148 DWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPIPSSSDCSISALTASQV-HGG-QLAAGFVDGSVRLYDVRTPD 1219 (1354)
Q Consensus 1148 ~~sp~~~~Lla~g~Dg~I~VWDl~t~~------~~v~~i~~~~~~~Vtsl~~~s~-~g~-~L~sgs~DGsVrIwDlr~~~ 1219 (1354)
...+.+..+++++.||.|++.++.... .+.+....+....+.++..+.. .+. .++.+..-+.|..||+|+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 666788999999999999999987621 1233334455556777754432 334 78889999999999999876
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe-cCCCCeEEEEEcCCCC---EEE-E
Q 000681 1220 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAP---IIA-S 1294 (1354)
Q Consensus 1220 ~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~-~h~~~VtsLafspdg~---~La-s 1294 (1354)
...... +.-..+.|++++.+|. +.++++|+..|.+.+||+|-+ .++..+. .+..+++.+..+|-.+ +.+ +
T Consensus 1185 ~~w~lk--~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1185 DAWRLK--NQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hHHhhh--cCccccceeEEEecCC--ceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 333221 1222478999999999 999999999999999999987 6777665 3457888888887433 444 4
Q ss_pred Ee-CCCcEEEEeC-CCceEEEEeccCCc---c---cc------ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1295 GS-AKQLIKVFSL-EGEQLGTIRYHHPS---F---MA------QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1295 gs-~Dg~I~Iwd~-~g~~l~~i~~~h~~---f---l~------~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|+ ..+.|.+|++ +|..-..+.. ..+ + .. ++.-......+..-+..+.+|+.|..|+.||
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~-s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWA-SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEc-CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44 5788999995 4544444433 111 0 00 1111223334445567899999999999997
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=146.15 Aligned_cols=268 Identities=13% Similarity=0.237 Sum_probs=192.4
Q ss_pred eEEEeeCCCcEEEEeCCCC-------------------CCeEEEEEcCCCCEEEEEECCCcEEEEECC--------C---
Q 000681 1023 DLAVSKLNNPIACWDTRFE-------------------KGTKTALLQPFSPIVVAADENERIKIWNYE--------E--- 1072 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~-------------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~--------t--- 1072 (1354)
.+++++.|..|++|-...+ ..|+++.|+|+|++||+|+++|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 7889999999999998754 569999999999999999999999999765 2
Q ss_pred -----CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEE
Q 000681 1073 -----DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1147 (1354)
Q Consensus 1073 -----g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v 1147 (1354)
....+.+.+|. ..|..++| ++++.++++++.|..+++||+.. +... ..+.+|...+.. +
T Consensus 108 ~~ke~w~v~k~lr~h~---~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~--G~l~-----~~~~dh~~yvqg----v 171 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHR---DDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHA--GQLL-----AILDDHEHYVQG----V 171 (434)
T ss_pred hCccceEEEEEecccc---cchhhhhc--cCCCceeeeeeccceEEEEEecc--ceeE-----eeccccccccce----e
Confidence 12344566787 89999999 78999999999999999999966 4433 347889988888 9
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCceeeeeec---------CCCCCCeEEE------------EEEcCCCCEEEEEEC
Q 000681 1148 DWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP---------SSSDCSISAL------------TASQVHGGQLAAGFV 1206 (1354)
Q Consensus 1148 ~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~---------~~~~~~Vtsl------------~~~s~~g~~L~sgs~ 1206 (1354)
+|.|-+.++++-+.|...+++.+...+ .+.... .+....++.+ ..++|+|..+++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeee-eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 999999999998988877777766544 222111 1122223333 135678888887542
Q ss_pred ----CC-----eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC----------------CCCCEEEEEECCCcEEEE
Q 000681 1207 ----DG-----SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG----------------LDPAKIVSASQAGDIQFL 1261 (1354)
Q Consensus 1207 ----DG-----sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~----------------~~g~~Lasgs~DG~I~IW 1261 (1354)
+| ..++|+...-+.+....... ......+.++|- ..+-.++.++. ..|.+|
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvy 326 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVY 326 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEe
Confidence 22 23556554333333222222 244555555442 01335566655 489999
Q ss_pred eCCCCCccEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEE
Q 000681 1262 DIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1312 (1354)
Q Consensus 1262 Dl~~~~~~v~~l-~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~ 1312 (1354)
|..+. .++... ..|-..|+.++|+++|.+++..|.||...+-.+++..+.
T Consensus 327 dtq~~-~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 327 DTQTL-EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccc-cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 99987 455443 458889999999999999999999999998887766655
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-14 Score=159.37 Aligned_cols=275 Identities=16% Similarity=0.240 Sum_probs=211.3
Q ss_pred EeCCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000681 1036 WDTRF-EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1036 Wd~~~-~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrI 1114 (1354)
+|+.. ..++..+.++.+|.+|+.|+..|.|..+||.++++...+.... .|.++.|. .+..+++++ ....+.|
T Consensus 123 f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~L--Hneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 123 FDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFL--HNEQFFAVA-QKKYVYV 195 (545)
T ss_pred ccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhh--cchHHHHhh-hhceEEE
Confidence 44444 3678899999999999999999999999999999998887765 89999995 466666666 5668999
Q ss_pred EEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEE
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~ 1194 (1354)
||... .++ ..+..|. .|.. +.|-|..-.|++++..|.++--|+.+++ .+..+....+. +..+ ..
T Consensus 196 YD~~G----tEl----HClk~~~-~v~r----LeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~-~~vm-~q 259 (545)
T KOG1272|consen 196 YDNNG----TEL----HCLKRHI-RVAR----LEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGR-TDVM-KQ 259 (545)
T ss_pred ecCCC----cEE----eehhhcC-chhh----hcccchhheeeecccCCceEEEeechhh-hhHHHHccCCc-cchh-hc
Confidence 99632 233 2344443 3444 7888877777778899999999999999 99988877665 6777 67
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~ 1274 (1354)
.|-+..+-+|...|+|.+|.....+.+++.. .|.++|.++++.++ |.+++|.+.|..++|||+|+.. .+.++.
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiL----cH~g~V~siAv~~~--G~YMaTtG~Dr~~kIWDlR~~~-ql~t~~ 332 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----CHRGPVSSIAVDRG--GRYMATTGLDRKVKIWDLRNFY-QLHTYR 332 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHH----hcCCCcceEEECCC--CcEEeecccccceeEeeecccc-ccceee
Confidence 7888899999999999999999888666554 46699999999999 9999999999999999999984 555555
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CCCce--EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd--~~g~~--l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
. ..+...+++|..| +||.+ ....|.||. ..+.. -...-. |. -.+.|..+.|.|....|-.|...|.
T Consensus 333 t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~-----~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HR-----CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred c-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hc-----cCcccccceeccHHHeeeccccCCc
Confidence 4 4467888998765 44444 335799997 44321 111111 22 2468999999999988888876553
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=144.53 Aligned_cols=270 Identities=14% Similarity=0.199 Sum_probs=173.5
Q ss_pred EEEECCCcEEEEECCC-Cc--eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeEEEEEccCCCCcceEEeeeec
Q 000681 1057 VAADENERIKIWNYEE-DT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1057 atgs~Dg~I~IWd~~t-g~--~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
++...++.|.+|++.+ ++ .+..+... +....+.+ ++++++|++++ .++.|.+|++.. .+.......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~--- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAE--- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC----CCCccEEE--CCCCCEEEEEECCCCcEEEEEECC-CCceEEeee---
Confidence 3446689999999964 33 44555432 35667888 78999987765 578899999862 343333311
Q ss_pred ccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCc---eeeeeecCCCCCCeEEEEEEcCCCCEEE-EEECC
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLA-AGFVD 1207 (1354)
Q Consensus 1133 l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~---~~v~~i~~~~~~~Vtsl~~~s~~g~~L~-sgs~D 1207 (1354)
.. ....... +.++|+++.+++++ .++.|.+||+.+.. ..+..+... ....++ .+++++++++ +...+
T Consensus 76 ~~-~~~~p~~----i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~-~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 76 SP-LPGSPTH----ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL--EGCHSA-NIDPDNRTLWVPCLKE 147 (330)
T ss_pred ec-CCCCceE----EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC--CcccEe-EeCCCCCEEEEeeCCC
Confidence 11 1112223 88999999999886 58999999997432 022222221 224555 5678888775 45567
Q ss_pred CeEEEEECCCCCeeeE----eecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCC--C-ccEEEEecC---
Q 000681 1208 GSVRLYDVRTPDMLVC----STRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNH--K-DAYLTIDAH--- 1276 (1354)
Q Consensus 1208 GsVrIwDlr~~~~~~~----~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG~I~IWDl~~~--~-~~v~~l~~h--- 1276 (1354)
+.|.+||+.+...+.. ...... ......+.|+|+ |+++++++. +++|.+||++.. . +.+..+..+
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 9999999986432211 011111 244678999999 898888876 899999999742 1 223333322
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCC--CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCe
Q 000681 1277 ---RGSLSALAVHRHAPIIASGSA-KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1349 (1354)
Q Consensus 1277 ---~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~-Dg~ 1349 (1354)
......+.++|++++++++.. ++.|.+|+++ +..+..+ . +.. .......+.|+|+|++|++++. +++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~-~~~----~~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-G-HQP----TETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-E-EEe----ccccCCceEECCCCCEEEEEEccCCc
Confidence 112346889999998888754 7899999963 3322222 2 210 0124567899999999998876 899
Q ss_pred EEEcC
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 V~IWd 1354 (1354)
|.+|+
T Consensus 298 v~v~~ 302 (330)
T PRK11028 298 ISVYE 302 (330)
T ss_pred EEEEE
Confidence 99983
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-12 Score=138.88 Aligned_cols=234 Identities=25% Similarity=0.321 Sum_probs=168.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC--CCe
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSS 1164 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~--Dg~ 1164 (1354)
..+..+.| .++...|..|+.|| .++|+.... ++ . .......+. .+-+-|+ ...++..+. -+.
T Consensus 6 ~ti~~~~~--Nqd~~~lsvGs~~G-yk~~~~~~~-~k--~------~~~~~~~~~--IvEmLFS--SSLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 6 PTINFIGF--NQDSTLLSVGSKDG-YKIFSCSPF-EK--C------FSKDTEGVS--IVEMLFS--SSLVAIVSIKQPRK 69 (391)
T ss_pred cceeeeee--ccceeEEEccCCCc-eeEEecCch-HH--h------hcccCCCeE--EEEeecc--cceeEEEecCCCce
Confidence 35666667 68888999999887 467776431 11 0 111111111 1113343 455555553 356
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000681 1165 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1165 I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~ 1244 (1354)
+++++.++.. .+..+.-.+ .|.+| -. +.+.+++.-.+ .|+|||+++.+ +...+.....+...+.++.++..
T Consensus 70 Lkv~~~Kk~~-~ICe~~fpt--~IL~V-rm--Nr~RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~- 140 (391)
T KOG2110|consen 70 LKVVHFKKKT-TICEIFFPT--SILAV-RM--NRKRLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNA- 140 (391)
T ss_pred EEEEEcccCc-eEEEEecCC--ceEEE-EE--ccceEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCC-
Confidence 9999999887 676665532 37887 33 45666666555 49999999988 56655555445566777777666
Q ss_pred CCCEEEEEE--CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEe-CCCceEEEEeccCCc
Q 000681 1245 DPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRYHHPS 1320 (1354)
Q Consensus 1245 ~g~~Lasgs--~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~-I~Iwd-~~g~~l~~i~~~h~~ 1320 (1354)
+.+++--+ ..|.|.+||..+- .++..+..|++.+.+++|+++|.+|||+|..|+ ||||. -+|+.+.+++- -.
T Consensus 141 -n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-G~- 216 (391)
T KOG2110|consen 141 -NCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-GT- 216 (391)
T ss_pred -CceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-Cc-
Confidence 66777543 4599999999988 799999999999999999999999999999997 58999 57899988875 11
Q ss_pred cccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1321 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1321 fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
.-..|.+++|||++++|++.+..++|.||
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIF 245 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence 23679999999999999999999999997
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-13 Score=153.04 Aligned_cols=261 Identities=14% Similarity=0.196 Sum_probs=178.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCceEEEeeCCCCCCCCe-EEEEEE-----eeCCCCEEEEEeCCCeEEE
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGI-SKLCLV-----NELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IW-d~~tg~~l~~~~~h~~~~~~I-tsL~f~-----~s~d~~~L~tgs~DG~IrI 1114 (1354)
.-+.|+.|+.....+.+++ |..+.+| |..+. .+....-.. .-| +++... -......++.++.||.+.|
T Consensus 15 e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~-s~~~~~~p~---df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 15 EKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRD-SVEVAKLPD---DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred eeEEeecccccceEEEecc-CceEEEeecccch-hhhhhhCCc---ccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 3456888888888887777 4555555 44332 222111111 111 111110 0123457888899999988
Q ss_pred EEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEE
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~ 1194 (1354)
.+-. ++.+ +.+..|.+.+.+ -.|+++|.-|+++|.||.|++|.-... ++..-.....+|.|+++.
T Consensus 90 l~k~---~rVE-----~sv~AH~~A~~~----gRW~~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 90 LNKS---ARVE-----RSISAHAAAISS----GRWSPDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCARWA 154 (737)
T ss_pred eccc---chhh-----hhhhhhhhhhhh----cccCCCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEEEEC
Confidence 7642 2322 336788888887 899999999999999999999985432 333333344569999554
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~ 1274 (1354)
+...+.+.+. .|.+.|=.+.....++ .++.|.+-|.++.|++. .+.+++|+.|-..++||-.. .++.+-.
T Consensus 155 p~S~~vl~c~--g~h~~IKpL~~n~k~i----~WkAHDGiiL~~~W~~~--s~lI~sgGED~kfKvWD~~G--~~Lf~S~ 224 (737)
T KOG1524|consen 155 PNSNSIVFCQ--GGHISIKPLAANSKII----RWRAHDGLVLSLSWSTQ--SNIIASGGEDFRFKIWDAQG--ANLFTSA 224 (737)
T ss_pred CCCCceEEec--CCeEEEeeccccccee----EEeccCcEEEEeecCcc--ccceeecCCceeEEeecccC--cccccCC
Confidence 4444444443 3556665665554333 33467799999999999 99999999999999999764 4777778
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
.|..+|++++|.|+ ..++.||.+ +++ +.. .+.+.|..++|++||..+++|+..|.|.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~~-------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-TAR-----------FSS-------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-eee-----------ecC-------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 89999999999999 677777642 333 211 23488999999999999999999988754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=141.48 Aligned_cols=240 Identities=17% Similarity=0.233 Sum_probs=172.9
Q ss_pred CCCeEEEEEcCCCC-----EEEEEECCCcEEEEECCC--Cce--EEEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEeCC
Q 000681 1041 EKGTKTALLQPFSP-----IVVAADENERIKIWNYEE--DTL--LNSFDNHD--FPDKGISKLCLVNELDVSLLLVASCN 1109 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~-----~Latgs~Dg~I~IWd~~t--g~~--l~~~~~h~--~~~~~ItsL~f~~s~d~~~L~tgs~D 1109 (1354)
.-+++.+.|.|+.. +|||++ ..+|+|.+.. ++. ...+..+. ....++++..| |+-+.++|.+++-|
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW-ne~dp~~igtSSiD 172 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW-NEVDPNLIGTSSID 172 (364)
T ss_pred CCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccc-ccCCcceeEeeccc
Confidence 36899999999763 566554 5899998873 221 11122211 12368999999 57799999999999
Q ss_pred CeEEEEEccCC-CCcceEEeeeecccCCCCCcccceeEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCC-CC
Q 000681 1110 GNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSS-DC 1186 (1354)
Q Consensus 1110 G~IrIWdl~~~-~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~-Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~-~~ 1186 (1354)
-+..|||++++ .+..+ ..+-.|...|.. ++|...+.. +++.|.||.||+||++........+.... ..
T Consensus 173 TTCTiWdie~~~~~~vk-----TQLIAHDKEV~D----Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVK-----TQLIAHDKEVYD----IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred CeEEEEEEeecccccee-----eEEEecCcceeE----EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 99999999873 11112 125689999999 888876555 45558999999999997651222233332 44
Q ss_pred CeEEEEEEcCCCCEEEEEECC-CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000681 1187 SISALTASQVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~sgs~D-GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~ 1265 (1354)
+...+++...+.+++++-..| ..|.+.|+|.+...+. .+++|.+.|+.++|.|. ....|++++.|..+-+||+..
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva---~L~~H~a~VNgIaWaPh-S~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA---RLRNHQASVNGIAWAPH-SSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee---hhhcCcccccceEecCC-CCceeeecCCcceEEEEeccc
Confidence 578886777777888876555 4699999998876655 44577899999999999 789999999999999999975
Q ss_pred CC-----ccEEEEecCCCCeEEEEEcCC-CCEEEEEeC
Q 000681 1266 HK-----DAYLTIDAHRGSLSALAVHRH-APIIASGSA 1297 (1354)
Q Consensus 1266 ~~-----~~v~~l~~h~~~VtsLafspd-g~~Lasgs~ 1297 (1354)
.. .++..+. -.+.|+.+.|++. ...|+.+..
T Consensus 320 ~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 320 MPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 42 2333333 4568999999964 557877764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=156.87 Aligned_cols=253 Identities=21% Similarity=0.341 Sum_probs=180.9
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC-CCcceEEeeeecccCCCCCcccceeEEEEecCCCeE
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1078 ~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
++..|. ..|+.+.| .+....|++++.||++++|++... ......+.+.-++.+|.++|.| ++....+..+
T Consensus 289 tl~s~~---d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~----v~v~~n~~~~ 359 (577)
T KOG0642|consen 289 TLRSHD---DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLC----VVVPSNGEHC 359 (577)
T ss_pred eeecch---hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEE----EEecCCceEE
Confidence 455566 78999999 468889999999999999999321 1222234445678999999998 8888899999
Q ss_pred EEEECCCeEEEEECCCCc---------eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC
Q 000681 1157 YASGEVSSIMLWDLEKEQ---------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1227 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~---------~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~ 1227 (1354)
++||-||+|+.|++.... .....+.+|.+. |+.+ +++.....|++++.||+||.|+...... +++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l-~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLL-ALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccc-eeee-eecccccceeeecCCceEEeeccCCcCc--cccCC
Confidence 999999999999654211 123455666665 9999 7777888899999999999999887663 33322
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC-------CCCeEEEEEcCCCCEEEEEeCCCc
Q 000681 1228 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-------RGSLSALAVHRHAPIIASGSAKQL 1300 (1354)
Q Consensus 1228 ~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-------~~~VtsLafspdg~~Lasgs~Dg~ 1300 (1354)
...| +.-.++++-.. .-...++...-+.--++|+... ..+..+... ...+..+.+||.+.+..++..|+.
T Consensus 436 ~~e~-g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKEH-GYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cccc-CCcceEeeccc-hhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 2222 33445555433 1112222222233233333333 222222211 235778899999999999999999
Q ss_pred EEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1301 IKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1301 I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
|+++| .+|+.+..... |. ..++++++.|+|.+|++|+.||.|++|.
T Consensus 513 Ir~~dn~~~~~l~s~~a-~~-------~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVA-HK-------DSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eecccccccccchheee-cc-------ceecceeecCCCceEEeecCCceeehhh
Confidence 99999 77888888877 55 7899999999999999999999999984
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-12 Score=147.22 Aligned_cols=276 Identities=17% Similarity=0.271 Sum_probs=196.2
Q ss_pred CCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~-Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
...+.|..+|||+| +++|...-.|++||+.+-.+ .|.-|. ...+..+..+ +.|-..++--..|.+|.+..-+.
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhl--Dae~V~feiL-sDD~SK~v~L~~DR~IefHak~G- 125 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHL--DAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYG- 125 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecc--cccceeEEEe-ccchhhheEeecCceeeehhhcC-
Confidence 45678999999996 56777889999999875432 344443 1233333333 45656666666777776654321
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
..+...|...+..++++..+.-|+.+|....|+-++++.+. .+..+...... ++++ ..++...+
T Consensus 126 -------------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~~-lN~v-~in~~hgL 189 (703)
T KOG2321|consen 126 -------------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSGE-LNVV-SINEEHGL 189 (703)
T ss_pred -------------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-ccccccccccc-ceee-eecCccce
Confidence 11222333334447777777778888888889999999999 88888765544 8888 55667789
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeec--CCCCCC-----CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEE-
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQV-----ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT- 1272 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~--~~~~h~-----~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~- 1272 (1354)
|++|+.+|.|.+||.|+...+....- ....|. ..|+++.|+-+ |-.+++|+.+|.|.|||++..+ ++..
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~-pl~~k 266 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASK-PLLVK 266 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCC-ceeec
Confidence 99999999999999998763322211 111222 34999999987 9999999999999999999884 4432
Q ss_pred EecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1273 IDAHRGSLSALAVHRH--APIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1273 l~~h~~~VtsLafspd--g~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
-.+..-+|..+.|.+. ++.+++. ....++||| .+|+....+.+ . ..++.+++-|++.++.++..++.
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t--------~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-T--------SDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-c--------CCcCceeeecCCceEEEecCCCc
Confidence 2233458889999775 4456654 346899999 78999988876 2 45999999999999999987776
Q ss_pred EEE
Q 000681 1350 VSI 1352 (1354)
Q Consensus 1350 V~I 1352 (1354)
+..
T Consensus 337 m~~ 339 (703)
T KOG2321|consen 337 MHT 339 (703)
T ss_pred cee
Confidence 543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=144.24 Aligned_cols=195 Identities=20% Similarity=0.228 Sum_probs=143.5
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000681 1145 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1224 (1354)
Q Consensus 1145 ~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~ 1224 (1354)
.+++++.++..+++++.||++|||+..+.. .+.....|+.. |.++ .++++|+.|++-+.| ..+|||.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~e-V~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a~- 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAE-VKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALAR- 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCc-cccc-eeCCCCcEEEEecCC-ceEEEEeccCchhhh-
Confidence 358999999999999999999999988777 67777777776 9999 789999999999999 999999999853322
Q ss_pred ecCCCCCCCCeEEEEEecCCCC-CE--EEEEECCCcEEEEeCCCCCc----cEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000681 1225 TRPHTQQVERVVGISFQPGLDP-AK--IVSASQAGDIQFLDIRNHKD----AYLTIDAHRGSLSALAVHRHAPIIASGSA 1297 (1354)
Q Consensus 1225 ~~~~~~h~~~I~sv~fsp~~~g-~~--Lasgs~DG~I~IWDl~~~~~----~v~~l~~h~~~VtsLafspdg~~Lasgs~ 1297 (1354)
. +..+....+..+.|+-+..+ .+ ++....-+.|+.||+...+. ...+...-...|++++++++|+++|.|+.
T Consensus 223 ~-t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 K-TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred c-CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 2 21233455677788776111 22 22223345677777654321 12222223457999999999999999999
Q ss_pred CCcEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1298 KQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1298 Dg~I~Iwd~~g-~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
||.|.|++... +.+.-++.. |...|+.+.|+|+.+++++.+.|....|
T Consensus 302 dGsVai~~~~~lq~~~~vk~a-------H~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEA-------HLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred CCcEEEEEeceeeeeEeehhh-------heeeeeeEEEcCCcCcccccccCCceeE
Confidence 99999999543 344444332 4578999999999999999888887665
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-11 Score=147.00 Aligned_cols=285 Identities=15% Similarity=0.171 Sum_probs=199.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--C--ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEE--D--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1117 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t--g--~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl 1117 (1354)
..+++.++||.++++|+|..||.|.+|.--. + ...+.+.=|. ..|+++.| +.+|.+|++||..|.+.+|.+
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---DEVNSLSF--SSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc---cccceeEE--ecCCceEeecccceEEEEEee
Confidence 4479999999999999999999999995432 2 3345566677 79999999 789999999999999999999
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC----------CCCCC
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----------SSDCS 1187 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~----------~~~~~ 1187 (1354)
.+ ++.++ ++....+|.. +.++|++....+...|..|.+-...+.. ...++.+ ...+-
T Consensus 281 ~T--~~kqf------LPRLgs~I~~----i~vS~ds~~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 281 ET--GKKQF------LPRLGSPILH----IVVSPDSDLYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred cC--CCccc------ccccCCeeEE----EEEcCCCCeEEEEecCceEEEEeccchh-hhhhccCccCCCcccccccccc
Confidence 88 33333 4666667776 8899999999999999999998875544 3333322 12232
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC-----CC---CCCCCeEEEEEecCCCCCEEEEEEC-----
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP-----HT---QQVERVVGISFQPGLDPAKIVSASQ----- 1254 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~-----~~---~h~~~I~sv~fsp~~~g~~Lasgs~----- 1254 (1354)
.+.+ .++|..+.++-.+..|.|.+||+-+...+. .++. .. .+...+++++.+.. |.+++|+-.
T Consensus 348 ~t~~-~idpr~~~~vln~~~g~vQ~ydl~td~~i~-~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 348 TTGV-SIDPRTNSLVLNGHPGHVQFYDLYTDSTIY-KLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKF 423 (792)
T ss_pred ceeE-EEcCCCCceeecCCCceEEEEeccccceee-eEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhh
Confidence 4445 566767788888899999999998876432 2211 11 12335677777776 888888753
Q ss_pred ---CC--cEEEEeCCCCCccE-----EEEecCCCCeEEEEEcC-CCC-EEEEEeCCCcEEEEeCCCce-------EEEEe
Q 000681 1255 ---AG--DIQFLDIRNHKDAY-----LTIDAHRGSLSALAVHR-HAP-IIASGSAKQLIKVFSLEGEQ-------LGTIR 1315 (1354)
Q Consensus 1255 ---DG--~I~IWDl~~~~~~v-----~~l~~h~~~VtsLafsp-dg~-~Lasgs~Dg~I~Iwd~~g~~-------l~~i~ 1315 (1354)
|| .+++|-..... .- .....|...+...++.+ ... ..++++.||.++||-+++.. ....+
T Consensus 424 ~~~~~e~~LKFW~~n~~~-kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~ 502 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNS-KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCK 502 (792)
T ss_pred hccCceEEEEEEEEcCCc-ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEe
Confidence 33 47889776442 21 22336776655555543 333 78999999999999863211 11111
Q ss_pred ccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1316 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1316 ~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
. -.. -|..++++++|+.||..|+++ .|++|.|||
T Consensus 503 ~-i~s---y~k~~i~a~~fs~dGslla~s-~~~~Itiwd 536 (792)
T KOG1963|consen 503 A-IGS---YHKTPITALCFSQDGSLLAVS-FDDTITIWD 536 (792)
T ss_pred e-eec---cccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence 1 000 145789999999999766665 688999997
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-12 Score=148.89 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=199.6
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD 1080 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~ 1080 (1354)
.+....+.+||..++.+.. +.+.++|...| +-|.|++|+.||+.+|+|+.|..|.||+-+-...++ +
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence 4666788899988888754 46789999876 679999999999999999999999999865322222 2
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
.|+ ..|.+|.| +|-...|++++-. ..-+|.... + ....|...+++ .+++|..+|.+++.|-
T Consensus 91 SH~---D~IQCMsF--NP~~h~LasCsLs-dFglWS~~q-----K------~V~K~kss~R~--~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 91 SHN---DAIQCMSF--NPITHQLASCSLS-DFGLWSPEQ-----K------SVSKHKSSSRI--ICCSWTNDGQYLALGM 151 (1081)
T ss_pred ccC---CeeeEeec--CchHHHhhhcchh-hccccChhh-----h------hHHhhhhheeE--EEeeecCCCcEEEEec
Confidence 355 78999999 6888889988754 456787643 1 12233333332 2389999999999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC----CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1236 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g----~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~ 1236 (1354)
.+|+|.+-+...+......-+++.+++|.++++.+..| ..+++.....++.+|.+.... +-+ -+.. .-.-.
T Consensus 152 ~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk-~r~L---~FdP~ 226 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGK-DRAL---NFDPC 226 (1081)
T ss_pred cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecc-cccC---CCCch
Confidence 99999999876655233444567778899995554433 477788888888888876432 211 1122 14566
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
|+.+.++ |.+++.|+.|+.+++|.-. + ..+.++......|+.++.+|+++.++.|+.||+|..|++
T Consensus 227 CisYf~N--GEy~LiGGsdk~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 227 CISYFTN--GEYILLGGSDKQLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred hheeccC--CcEEEEccCCCceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8889998 9999999999999999754 4 467777777889999999999999999999999999984
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=143.29 Aligned_cols=187 Identities=16% Similarity=0.240 Sum_probs=142.8
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1154 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1154 ~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~-~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
..++++...|.|++||..+++ .+..++++... +..+.+.+. .+..+.+++.||+|++||+|......+. ...+|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~-~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPAT-TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--SWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCc-ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--eccCCC
Confidence 457777899999999999998 88899887665 777765554 5678999999999999999987644332 222333
Q ss_pred -CCeEEEEEecCCCCCEEEEEEC----CCcEEEEeCCCCCccEEEE-ecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 000681 1233 -ERVVGISFQPGLDPAKIVSASQ----AGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1233 -~~I~sv~fsp~~~g~~Lasgs~----DG~I~IWDl~~~~~~v~~l-~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd 1305 (1354)
.+..+++..-. ++++++|+. +-.|.+||+|+.++++..+ ..|...|+++.|||..+ +|++||.||.|.|||
T Consensus 117 ~~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 56777777655 788888874 5679999999886545544 47999999999999765 999999999999999
Q ss_pred CCCce----EEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000681 1306 LEGEQ----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1306 ~~g~~----l~~i~~~h~~fl~~~~~~V~sLafspdg-~~Lasgs~Dg~V~IWd 1354 (1354)
+++.. +...-. +.+.|.++.|+.++ +.+.+-+..+...+|+
T Consensus 195 ~~~d~EeDaL~~viN--------~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 195 TKKDNEEDALLHVIN--------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred cCCCcchhhHHHhhc--------ccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 76542 211212 34779999999888 4577777788888884
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=141.32 Aligned_cols=262 Identities=14% Similarity=0.160 Sum_probs=184.1
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc-cCCCCCcccceeEEEEecCCCeE
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1078 ~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~~h~~~V~si~~~v~~sp~~~~L 1156 (1354)
.+.+|. +.|+++.| +.++++|++|++|..+++|++...-- .+..+++... ..|...|.| ++|+..+..+
T Consensus 51 D~~~H~---GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~-~k~~KPI~~~~~~H~SNIF~----L~F~~~N~~~ 120 (609)
T KOG4227|consen 51 DVREHT---GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMV-RKTPKPIGVMEHPHRSNIFS----LEFDLENRFL 120 (609)
T ss_pred hhhhhc---cccceeee--ccCCeEEeecCCcceeeeechHHHHh-hcCCCCceeccCccccceEE----EEEccCCeeE
Confidence 356788 89999999 56899999999999999999853100 0000111111 223345555 9999889999
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCC-CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1157 la~g~Dg~I~VWDl~t~~~~v~~i~~~-~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I 1235 (1354)
++|+.+++|...|+++.+ .+..+... ....|..+ ..+|..+.|++.+.+|.|.+||.|........+ .........
T Consensus 121 ~SG~~~~~VI~HDiEt~q-si~V~~~~~~~~~VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F 197 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQ-SIYVANENNNRGDVYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNF 197 (609)
T ss_pred ecCCCcceeEeeecccce-eeeeecccCcccceeec-ccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccc
Confidence 999999999999999988 56555432 23359999 566778999999999999999999765332222 111233678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC------CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------GSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1236 ~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~------~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~ 1309 (1354)
..+.|+|. ...+|++.+..|-+-+||++....++....+.. ..-.++.|+|.|..+.+--....-.+||+-.+
T Consensus 198 ~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 198 YTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred eeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 89999998 678899999999999999998755544333221 12356789999998887665555677886665
Q ss_pred eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1310 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1310 ~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+..++..|..--.-....+.+++|--+.. +++|+.+-.|.+|.
T Consensus 277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred cceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 555555423310011235677888876554 89999999999993
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=136.42 Aligned_cols=262 Identities=15% Similarity=0.207 Sum_probs=162.6
Q ss_pred EEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEE
Q 000681 1024 LAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKL 1092 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL 1092 (1354)
|..+...|.+++|+.++. ..|+.+.--|+ ..|.+-+.|+.+.+|++..+..+.. |. -.++++
T Consensus 28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~S---i~~nsl 100 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HS---IVVNSL 100 (323)
T ss_pred hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---ee---eecccc
Confidence 455667788999999876 45667777776 5677888899999999986543322 22 122333
Q ss_pred EEEe---eCCC----CEEEEEeCCC-eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecC--CCe-EEEEEC
Q 000681 1093 CLVN---ELDV----SLLLVASCNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGY-LYASGE 1161 (1354)
Q Consensus 1093 ~f~~---s~d~----~~L~tgs~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~--~~~-Lla~g~ 1161 (1354)
.|+. .+.+ ..++.-+... .+.+-|... +.+. +...+....-....++..|.-. ... +++|..
T Consensus 101 gFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~---~tqv----~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyE 173 (323)
T KOG0322|consen 101 GFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGD---TTQV----QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYE 173 (323)
T ss_pred ccccceeccCCCcchhheecCCcccchhhhhccCc---ccee----EccCchhccccCceeeeeccccccceEEEEEecc
Confidence 3321 0010 1111111100 011111100 0010 1111111111111222333222 223 444558
Q ss_pred CCeEEEEECCCCceeeeeecC---------CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCC--CeeeEeecCCCC
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPS---------SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP--DMLVCSTRPHTQ 1230 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~~~v~~i~~---------~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~--~~~~~~~~~~~~ 1230 (1354)
+|.|.+||+.++. .+..++. .+..+|.++.+. +..+.=++|+.+..+..|.+... ...+... +.-
T Consensus 174 sghvv~wd~S~~~-~~~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e--~~l 249 (323)
T KOG0322|consen 174 SGHVVIWDLSTGD-KIIQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKE--ITL 249 (323)
T ss_pred CCeEEEEEccCCc-eeeccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccce--EEe
Confidence 9999999999985 3333321 233458888543 44445567788888889988743 2112111 111
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
.+-.|..+.+.|+ +++++|++-||.||||..++. .++..++.|.+.|++++|||+.+++|++|.|++|.+|++
T Consensus 250 knpGv~gvrIRpD--~KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 250 KNPGVSGVRIRPD--GKILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCCccceEEccC--CcEEeecccCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2356889999999 999999999999999999999 799999999999999999999999999999999999984
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-12 Score=149.89 Aligned_cols=245 Identities=14% Similarity=0.192 Sum_probs=169.0
Q ss_pred EeeCCCcEEEEeCCCC--------------CCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------ceEEEeeCCC
Q 000681 1026 VSKLNNPIACWDTRFE--------------KGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHD 1083 (1354)
Q Consensus 1026 ~s~~d~~I~iWd~~~~--------------~~I~sL~fspdg-~~Latgs~Dg~I~IWd~~tg-------~~l~~~~~h~ 1083 (1354)
..+..+.|.+++.... ..|+.+.|.|++ ..||++++||.|++|.+..+ .....+..|.
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 4566779999998753 669999999965 58999999999999998754 3456678888
Q ss_pred CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCC
Q 000681 1084 FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1163 (1354)
Q Consensus 1084 ~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg 1163 (1354)
..|+++.|++ -..+.|++++.|-+|++||+.+..... .+.+|...|.+ ++|+|+|..+++.+.||
T Consensus 678 ---eKI~slRfHP-LAadvLa~asyd~Ti~lWDl~~~~~~~-------~l~gHtdqIf~----~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 678 ---EKITSLRFHP-LAADVLAVASYDSTIELWDLANAKLYS-------RLVGHTDQIFG----IAWSPDGRRIATVCKDG 742 (1012)
T ss_pred ---ceEEEEEecc-hhhhHhhhhhccceeeeeehhhhhhhh-------eeccCcCceeE----EEECCCCcceeeeecCc
Confidence 8999999974 577899999999999999997733322 26799999988 99999999999999999
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC----eEEEEECCCCC-eeeEeecCCCCCCCCeEEE
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG----SVRLYDVRTPD-MLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1164 ~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG----sVrIwDlr~~~-~~~~~~~~~~~h~~~I~sv 1238 (1354)
+|+||..++..+.+..=++..+..--.| .|--+|+++++.+.|. .|.+||..+-. ..+... .+. -.-.+.--
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi-~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~-~lD-vaps~LvP 819 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARI-LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQ-VLD-VAPSPLVP 819 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeE-EEEecCcEEEEecccccchhhhhhhhhhhccCCcceee-eec-ccCccccc
Confidence 9999999877645555444333323344 3445788877766654 47788766433 011110 000 00111111
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCC--eEEEEEcCCC
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS--LSALAVHRHA 1289 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~--VtsLafspdg 1289 (1354)
.+.++ .+-.|++|-.|..|.+|.+-.....+..+..|..+ -..++|++..
T Consensus 820 ~YD~D-s~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 820 HYDYD-SNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred cccCC-CceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeeccc
Confidence 23444 56788899999999999987653223333333222 2346666543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-11 Score=133.86 Aligned_cols=230 Identities=14% Similarity=0.208 Sum_probs=175.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
.+|+|.+|++|...+|++.....|.||..... +...+++.|. ..|+.+.| ++..+.|++|+.|..-.||...
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdW--ap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDW--APKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---cceeEEee--cCCCCceeEccCCCCccccccC
Confidence 78999999999999999999999999988755 4677888898 89999999 7899999999999999999983
Q ss_pred -CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceee---eeecCCCCCCeEEEEEE
Q 000681 1119 -DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV---NPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1119 -~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v---~~i~~~~~~~Vtsl~~~ 1194 (1354)
...-+..++ +..+....++ +.|+|.++.+++|+..+.|.||-.+.+. -- +.++....+.|+++ .+
T Consensus 86 ~~~~Wkptlv-----LlRiNrAAt~----V~WsP~enkFAVgSgar~isVcy~E~EN-dWWVsKhikkPirStv~sl-dW 154 (361)
T KOG1523|consen 86 SGGTWKPTLV-----LLRINRAATC----VKWSPKENKFAVGSGARLISVCYYEQEN-DWWVSKHIKKPIRSTVTSL-DW 154 (361)
T ss_pred CCCeecccee-----EEEeccceee----EeecCcCceEEeccCccEEEEEEEeccc-ceehhhhhCCccccceeee-ec
Confidence 322344444 5566666666 9999999999999999999999988766 22 22333334459999 66
Q ss_pred cCCCCEEEEEECCCeEEEEECCC-----CC---------eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRT-----PD---------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~-----~~---------~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~I 1260 (1354)
.+++-++++|+.|+..|+|..-- .. +.-..+.......+++..+.|+|. |..|+-.+.|+.+.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEE
Confidence 78899999999999999986431 10 001111122234589999999999 999999999999999
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcCCC
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafspdg 1289 (1354)
-|.....+.+.+.....-+..++.|-.+.
T Consensus 233 ~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 233 VDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred eecCCCchhccchhhccCCceeeEeecCC
Confidence 99877643444444444566777765443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-12 Score=139.37 Aligned_cols=226 Identities=12% Similarity=0.230 Sum_probs=164.9
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1042 KGTKTALLQPFSP-IVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
.+|..++|.|..+ .||+|++|.+|.||.+..+ +.+..+.+|. .+|--+.|++ ...+.|++++.|.+|.
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---rrVg~V~wHP-tA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---RRVGLVQWHP-TAPNVLLSAGSDNTVS 157 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---eeEEEEeecc-cchhhHhhccCCceEE
Confidence 6789999999654 7889999999999998754 4567788999 8999999974 5678999999999999
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
||++.+ +...+. +. |...|.+ +.|+-+|+.+++++.|+.|||||.++++ .+..-.+|.+..-..+ .
T Consensus 158 iWnv~t--geali~-----l~-hpd~i~S----~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~Ra-i 223 (472)
T KOG0303|consen 158 IWNVGT--GEALIT-----LD-HPDMVYS----MSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPARA-I 223 (472)
T ss_pred EEeccC--Cceeee-----cC-CCCeEEE----EEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCccee-E
Confidence 999977 433222 33 8888888 9999999999999999999999999999 8887777766544444 3
Q ss_pred EcCCCCEEEEEEC---CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccE
Q 000681 1194 SQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~---DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v 1270 (1354)
|-.+|.++.+|+. +..+-+||..+-+...... .+ ..++.|.---|.++ .+-+.++|-.|+.|+-|.+.....-+
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-DtSnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d~P~~ 300 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-DTSNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNEPPFV 300 (472)
T ss_pred EeccCceeeeccccccccceeccCcccccCcceeE-Ee-ccCCceEEeeecCC-CCEEEEEecCCcceEEEEecCCCcee
Confidence 4457777777764 6789999987655332221 22 22355666667787 34445566689999999998763123
Q ss_pred EEEecC--CCCeEEEEEcCC
Q 000681 1271 LTIDAH--RGSLSALAVHRH 1288 (1354)
Q Consensus 1271 ~~l~~h--~~~VtsLafspd 1288 (1354)
+-+... ..+-..+.|-|.
T Consensus 301 hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 301 HYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EEecccccCCcccccccccc
Confidence 322221 233445555553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=138.29 Aligned_cols=247 Identities=18% Similarity=0.250 Sum_probs=173.4
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCceEEEe------eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1042 KGTKTALLQPFSP--IVVAADENERIKIWNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fspdg~--~Latgs~Dg~I~IWd~~tg~~l~~~------~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
..|+.++|.-+++ .+...+.+..+..+..+........ .... ..|..++. .+..|++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~---~~I~gl~~----~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT---KSIKGLKL----ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc---ccccchhh----cCCEEEEEecCCcEE
Confidence 4566677765554 4444445666776666655444332 2333 67888877 456788889999999
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EECC--CeEEEEECCCCceeeeeecCCC------
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEV--SSIMLWDLEKEQQMVNPIPSSS------ 1184 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g~D--g~I~VWDl~t~~~~v~~i~~~~------ 1184 (1354)
+|......-....... +..+ ..+.. +.-++...++++ ||.. ..+.+||++..+ .+..-+.-.
T Consensus 129 ~~~~k~~d~hss~l~~---la~g-~g~~~----~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIK---LATG-PGLYD----VRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL 199 (412)
T ss_pred EEeccCCcccccccee---eecC-Cceee----eccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc
Confidence 9998742211111101 1111 22222 333344455555 6777 789999999876 554433211
Q ss_pred --CCCeEEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000681 1185 --DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1261 (1354)
Q Consensus 1185 --~~~Vtsl~~~s~-~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IW 1261 (1354)
.-.++++.+.+. ....|++++.-+.||+||.+.+..++..+... ...|+++...|. ++.+++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~--gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPS--GNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCC--CcEEEEecccchhhee
Confidence 123677755443 16789999999999999999888787777444 378999999999 9999999999999999
Q ss_pred eCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc
Q 000681 1262 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1262 Dl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~ 1309 (1354)
|++.++.....+.+..+.|+++..||.++++|++|-|..|+|+|....
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999985555558888999999999999999999999999999997653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=145.97 Aligned_cols=281 Identities=13% Similarity=0.194 Sum_probs=186.6
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEEccCCCCcce
Q 000681 1047 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQK 1125 (1354)
Q Consensus 1047 L~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~-~~L~tgs~DG~IrIWdl~~~~~~~~ 1125 (1354)
-.|++|+++++... +..|.||...+|.+++.+.+|. ..++++.+.++... .++++++.||.|++||... .+
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~----~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD----GE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCC----cE
Confidence 35899999888777 7799999999999999999999 88888888655444 6888999999999999854 33
Q ss_pred EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC------------CeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1126 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------------SSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1126 lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D------------g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
+.+.+ ..+ .++....+..++-...-.+.++..| +.++-+.+.+.......+...+.. -.+| .
T Consensus 94 Llkt~---~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I-~ 167 (792)
T KOG1963|consen 94 LLKTF---DNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSI-V 167 (792)
T ss_pred EEEEE---ecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccE-E
Confidence 33222 111 1111111101111111111112222 223333332221011111111111 1334 4
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC---CCccE
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN---HKDAY 1270 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~---~~~~v 1270 (1354)
+.+.|.+... ..+..+.+|+...+............|...+++.++||+ ++++++|..||+|.+|.--. .+...
T Consensus 168 ~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 168 DNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccccccc
Confidence 4445544444 445678888888755333333344567778999999999 99999999999999996433 22455
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeE
Q 000681 1271 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1271 ~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V 1350 (1354)
..+.=|...|.+++|+++|.+|.+|+..|.+.+|.+.... .+ |+..-.++|..+.++||+.+.+....|+.|
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq-------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ-------FLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc-------cccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 6777789999999999999999999999999999965432 22 333445899999999999999999999988
Q ss_pred EE
Q 000681 1351 SI 1352 (1354)
Q Consensus 1351 ~I 1352 (1354)
.+
T Consensus 317 ~l 318 (792)
T KOG1963|consen 317 HL 318 (792)
T ss_pred EE
Confidence 76
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=123.29 Aligned_cols=259 Identities=16% Similarity=0.179 Sum_probs=175.3
Q ss_pred eecCCCCceEEEeeCCCcEEEEeCCCC--------------------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 000681 1015 CQRSCNSFDLAVSKLNNPIACWDTRFE--------------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDT 1074 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d~~I~iWd~~~~--------------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~ 1074 (1354)
...++.+..++++..+++|.+...+.- .+|+.++|+ +.+|++|+ ||.|+=|.|....
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhh
Confidence 334455566888889999998887642 678899998 55777877 6999999886432
Q ss_pred e------EEEee----CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccce
Q 000681 1075 L------LNSFD----NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSN 1144 (1354)
Q Consensus 1075 ~------l~~~~----~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~ 1144 (1354)
. +...+ ....+.-.|++|.. .|..+-++.++.|+.+.-||+++ |+.+.. +++|+..+.+
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~AgGD~~~y~~dlE~--G~i~r~-----~rGHtDYvH~-- 161 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFAGGDGVIYQVDLED--GRIQRE-----YRGHTDYVHS-- 161 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEecCCeEEEEEEecC--CEEEEE-----EcCCcceeee--
Confidence 2 11111 11112246888888 45666666666899999999987 655544 8999999988
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC---------CCCCeEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000681 1145 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---------SDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215 (1354)
Q Consensus 1145 ~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~---------~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDl 1215 (1354)
+.-...++.+++|+.||++|+||.++.+ ++..+... -+..|-++ ..+...+++|+. ..+.+|.+
T Consensus 162 --vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigal---a~~edWlvCGgG-p~lslwhL 234 (325)
T KOG0649|consen 162 --VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGAL---AVNEDWLVCGGG-PKLSLWHL 234 (325)
T ss_pred --eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEE---eccCceEEecCC-CceeEEec
Confidence 5554578899999999999999999999 88877532 23335555 235667777764 46899999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCC-CCEEEE
Q 000681 1216 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIAS 1294 (1354)
Q Consensus 1216 r~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspd-g~~Las 1294 (1354)
|..+ ..+++ ... ..+..+.|.. +.+++++....|.-|.+..- .-..+.......++..|+-. -++|-.
T Consensus 235 rsse-~t~vf-pip---a~v~~v~F~~----d~vl~~G~g~~v~~~~l~Gv--l~a~ip~~s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 235 RSSE-STCVF-PIP---ARVHLVDFVD----DCVLIGGEGNHVQSYTLNGV--LQANIPVESTACYSASWQTSPIKFISI 303 (325)
T ss_pred cCCC-ceEEE-ecc---cceeEeeeec----ceEEEeccccceeeeeeccE--EEEeccCCccceeeecccCCceEEEEe
Confidence 9887 55555 333 6788888864 48888888888999988632 33333322233444444322 224444
Q ss_pred EeCCCcEEEEe
Q 000681 1295 GSAKQLIKVFS 1305 (1354)
Q Consensus 1295 gs~Dg~I~Iwd 1305 (1354)
++..+.+.|+.
T Consensus 304 ag~s~~~~i~~ 314 (325)
T KOG0649|consen 304 AGFSNKLHILK 314 (325)
T ss_pred cccceeeeeee
Confidence 45555565553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-11 Score=146.05 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=160.5
Q ss_pred CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCC
Q 000681 1062 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1138 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1138 (1354)
+..|.+||.+... ...+..+. ..+.+..| ++||+.|+.++.+ ..|++||+.+ +..+.+ ..+.++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l---~~~~g~~- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS---QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRS--GARKVV---ASFRGHN- 250 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC---CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCC--CceEEE---ecCCCcc-
Confidence 4689999987544 45566666 67899999 7899999887654 4699999965 333333 2233332
Q ss_pred CcccceeEEEEecCCCeEEEEE-CCCeEEE--EECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 000681 1139 GVRCSNVVVDWQQQSGYLYASG-EVSSIML--WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYD 1214 (1354)
Q Consensus 1139 ~V~si~~~v~~sp~~~~Lla~g-~Dg~I~V--WDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs-~DGsVrIwD 1214 (1354)
.. +.|+|++..|+.++ .+|.+.| ||+.++. ...+..+.. .+.+. .++++|+.++.++ .+|..++|+
T Consensus 251 --~~----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 251 --GA----PAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAG-NNTEP-SWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --Cc----eeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCC-CcCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 23 79999999988875 6776555 4666655 344544433 36677 7789999777655 578888988
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEE
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1215 lr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Las 1294 (1354)
+.......... .. .. .+..|+|+ |+.|+.++.++ +.+||+.++. .. .+..+ .....+.|+|+|++|+.
T Consensus 321 ~~~~~~~~~~l-~~---~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~-~~-~lt~~-~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 321 MSASGGGASLV-GG---RG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGS-TE-VLSST-FLDESPSISPNGIMIIY 388 (429)
T ss_pred EECCCCCeEEe-cC---CC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCC-eE-EecCC-CCCCCceECCCCCEEEE
Confidence 76433222222 22 22 45789999 89998887765 5569998873 32 22222 13456789999999999
Q ss_pred EeCCCcEEEEe---CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1295 GSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1295 gs~Dg~I~Iwd---~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
++.++.+.+|. .+|..+..+.. |. +.+...+|+|.
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPG-SD-------GQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccC-CC-------CCCCCcccCCC
Confidence 99988887776 57888888876 54 66788899985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=129.14 Aligned_cols=257 Identities=15% Similarity=0.257 Sum_probs=177.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-c----eEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEEe
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEED-T----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1107 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-~----~l~~~~~h~~~---------~~~ItsL~f~~s~d~~~L~tgs 1107 (1354)
.-|.++.|..+|.+|+||+.+|.|.++.-+.. + ....++.|.+. ...|..+.|+...+...++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 56889999999999999999999999964432 2 34456666532 2468899998666777888889
Q ss_pred CCCeEEEEEccCCCCcce-----------EE-----------------eeeec-ccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1108 CNGNIRIWKDYDQKDKQK-----------LV-----------------TAFSS-IQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1108 ~DG~IrIWdl~~~~~~~~-----------lv-----------------s~~~~-l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
.|.+|++|.++....+.+ .+ .+.+. -..|.--|.+ +.++.+...+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS----IS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS----ISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee----eeecCccceEee
Confidence 999999999965322210 00 01111 1235555555 677766666665
Q ss_pred EECCCeEEEEECCCCce--eeeeecCCC----CCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeee---EeecC--
Q 000681 1159 SGEVSSIMLWDLEKEQQ--MVNPIPSSS----DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV---CSTRP-- 1227 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~--~v~~i~~~~----~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~---~~~~~-- 1227 (1354)
.+|=.|.+|+++-..+ .+..++.+. ..-|++..+.+...+.|+-.+..|+|++-|+|...-+- +.+..
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4667799999874331 233333322 11366665566667899999999999999999533111 11100
Q ss_pred -------CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCC------------C---eEEEEE
Q 000681 1228 -------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG------------S---LSALAV 1285 (1354)
Q Consensus 1228 -------~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~------------~---VtsLaf 1285 (1354)
+.+--..|..+.|+.. |+++++-+. -+|++||+.....++.++..|.. . -..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~s--GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS--GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC--CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1111256889999998 999998754 48999999776689999988742 2 246789
Q ss_pred cCCCCEEEEEeCCCcEEEEeC
Q 000681 1286 HRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1286 spdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
+.++.+++||+....+++|+.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 999999999999999999994
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-11 Score=131.91 Aligned_cols=251 Identities=15% Similarity=0.224 Sum_probs=179.0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~ 1166 (1354)
..|++++|-..+....|+..+.+..+..+.+....-...+ ...........+|.+.. ..++.|++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-~~~~~~~l~~~~I~gl~------~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-DDAKTVSLGTKSIKGLK------LADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-ccccccccccccccchh------hcCCEEEEEecCCcEE
Confidence 5788888864445556666656767777666441111111 01112333444555422 2478899999999999
Q ss_pred EEECCCCc---eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC--CeEEEEECCCCCeeeEeecCCC-----CCCCCeE
Q 000681 1167 LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD--GSVRLYDVRTPDMLVCSTRPHT-----QQVERVV 1236 (1354)
Q Consensus 1167 VWDl~t~~---~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D--GsVrIwDlr~~~~~~~~~~~~~-----~h~~~I~ 1236 (1354)
+|..+.+. .....+..+ ..+..|.-......++++|+.. ..+++||+...+++........ .-.-|++
T Consensus 129 ~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 99988432 123344443 2366664455566778889988 8899999997754332211110 0124788
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceE-EE-E
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GT-I 1314 (1354)
Q Consensus 1237 sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l-~~-i 1314 (1354)
++.|-+......|++++.-+.|++||.+.++.|+..+..-..+|+++...|.+++|++|..-|.+..||..+..+ .. +
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 889977544689999999999999999999899999998899999999999999999999999999999765443 33 3
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1315 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1315 ~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
++ -.+.|+++..||.+.+||+||-|..|+|+|
T Consensus 287 kg--------~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 287 KG--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred CC--------ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 33 348899999999999999999999999997
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-10 Score=131.62 Aligned_cols=303 Identities=11% Similarity=0.090 Sum_probs=184.5
Q ss_pred EEEeeCCCcEEEEeCCCC---------CCe-EEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEE
Q 000681 1024 LAVSKLNNPIACWDTRFE---------KGT-KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1093 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~---------~~I-~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~ 1093 (1354)
+++...++.+.+.|..+. ..+ ..+.|+|||+++.+++.||.|.++|+.+++.+.+++... ...+++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~ 84 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIA 84 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEE
Confidence 345566778888888764 333 347799999999999999999999999999999998766 567888
Q ss_pred EEeeCCCCEEEEEe-CCCeEEEEEccCCCCcceEEeeeec--cc--CCCCCcccceeEEEEecCCCeEEEEE-CCCeEEE
Q 000681 1094 LVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS--IQ--GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIML 1167 (1354)
Q Consensus 1094 f~~s~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~--l~--~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~V 1167 (1354)
+ ++||+++++++ .++.+.|+|..+ .+.+..+.. .. .....+.. +..++....+++.- +.+.|.+
T Consensus 85 ~--s~DG~~~~v~n~~~~~v~v~D~~t----le~v~~I~~~~~~~~~~~~Rv~a----Iv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 85 V--SPDGKYVYVANYEPGTVSVIDAET----LEPVKTIPTGGMPVDGPESRVAA----IVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp E----TTTEEEEEEEETTEEEEEETTT------EEEEEE--EE-TTTS---EEE----EEE-SSSSEEEEEETTTTEEEE
T ss_pred E--cCCCCEEEEEecCCCceeEecccc----ccceeecccccccccccCCCcee----EEecCCCCEEEEEEccCCeEEE
Confidence 8 78999998775 689999999866 222211111 11 12223333 45566777666665 4588888
Q ss_pred EECCCCceee--eeecCCCCCCeEEEEEEcCCCCEEEEE-ECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-
Q 000681 1168 WDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG- 1243 (1354)
Q Consensus 1168 WDl~t~~~~v--~~i~~~~~~~Vtsl~~~s~~g~~L~sg-s~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~- 1243 (1354)
.|....+ .+ ..+.. ....... .+++++++++++ ..+..|-++|..+++.....-.....|..++..+ .||.
T Consensus 155 Vdy~d~~-~~~~~~i~~--g~~~~D~-~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~ 229 (369)
T PF02239_consen 155 VDYSDPK-NLKVTTIKV--GRFPHDG-GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGF 229 (369)
T ss_dssp EETTTSS-CEEEEEEE----TTEEEE-EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTT
T ss_pred EEecccc-ccceeeecc--ccccccc-ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCc
Confidence 8977655 33 23332 2335666 778899887664 5677899999998874333222233344555544 2443
Q ss_pred -------CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE----eCCCcEEEEeCCC-ceE
Q 000681 1244 -------LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG----SAKQLIKVFSLEG-EQL 1311 (1354)
Q Consensus 1244 -------~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg----s~Dg~I~Iwd~~g-~~l 1311 (1354)
..+...++.-..+.+.+||.... +.++++....++ .-+..||+++++.+. ...++|.++|.+. +.+
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred ceEEeeccccceecccccCCccccchhhcC-eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee
Confidence 01222222223345667888887 688888877666 778889999999887 4458999999654 444
Q ss_pred EEEeccCCccccccCCCeEEEEEecCCCEEEEEEC--CCeEEEcC
Q 000681 1312 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA--DACVSIHS 1354 (1354)
Q Consensus 1312 ~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~--Dg~V~IWd 1354 (1354)
.++.. .. ...+..+.|+++|..+..+.. ++.|.|||
T Consensus 308 ~~i~~-~~------~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 308 KTITP-GP------GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp E-HHH-HH------T--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EEEec-cC------CCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 55543 11 235899999999987665544 44799886
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-10 Score=121.41 Aligned_cols=239 Identities=16% Similarity=0.244 Sum_probs=156.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------CeEEEEE
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWK 1116 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D------G~IrIWd 1116 (1354)
...+++|++|...+++|. |...+||+.+.-+....-.-+. .+-.+..|-| ..+-+.++||.+ ..|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~-~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFID-GGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhcccc-CchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEe
Confidence 345699999999999998 5558999988633322211111 1134555555 122233445443 4699999
Q ss_pred ccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeEEEEEEc
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQ 1195 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~-~~~Vtsl~~~s 1195 (1354)
... +. .+.. -....+|.+ +... ...|++. -.+.|+||.....-+.++.+.... ...+.++ ...
T Consensus 82 D~k--~~--~i~e----l~f~~~I~~----V~l~--r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~-~~~ 145 (346)
T KOG2111|consen 82 DLK--ER--CIIE----LSFNSEIKA----VKLR--RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSL-CPT 145 (346)
T ss_pred ccc--Cc--EEEE----EEeccceee----EEEc--CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEee-cCC
Confidence 543 22 2211 123455666 4443 4455554 456799999874332555555433 1224444 222
Q ss_pred CCCCEEEE-EECCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEeCCCCCccEEE
Q 000681 1196 VHGGQLAA-GFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLT 1272 (1354)
Q Consensus 1196 ~~g~~L~s-gs~DGsVrIwDlr~~~~-~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~-I~IWDl~~~~~~v~~ 1272 (1354)
.+...|+. |..-|.|+|-|+...+. .-.. ...|.+.|.+++.+-+ |..+||+|..|+ |||||..++ ..+..
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~---I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g-~~l~E 219 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSI---INAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG-TLLQE 219 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceE---EEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-cEeee
Confidence 22233333 56679999999987653 1122 2367799999999998 999999999998 899999998 68887
Q ss_pred EecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1273 IDAH--RGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1273 l~~h--~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
++-. ...|.+++|+|++.+||++|..|+|.||.+.+
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 7732 45799999999999999999999999998543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=138.21 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=146.0
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1090 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1090 tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
..++| +.+|..|++|+.||++|||+... -... .....|...|.+ ++|+|++..|++.|.| ..+||+
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps--~~t~-----l~e~~~~~eV~D----L~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPS--MLTI-----LEEIAHHAEVKD----LDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCc--chhh-----hhhHhhcCcccc----ceeCCCCcEEEEecCC-ceEEEE
Confidence 46778 68999999999999999999644 1111 235678889999 9999999999999999 899999
Q ss_pred CCCCceeeeeecC-CCCCCeEEEEEEcCCC---C--EEEEEECCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEe
Q 000681 1170 LEKEQQMVNPIPS-SSDCSISALTASQVHG---G--QLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1170 l~t~~~~v~~i~~-~~~~~Vtsl~~~s~~g---~--~L~sgs~DGsVrIwDlr~~~~--~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
.+++. ++..... ..+.....+ -+..++ . .++....-+.|+.||+...+. ..+..+.. .....|++++++
T Consensus 214 ~~~g~-~~a~~t~~~k~~~~~~c-RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS 290 (398)
T KOG0771|consen 214 VNTGA-ALARKTPFSKDEMFSSC-RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVS 290 (398)
T ss_pred eccCc-hhhhcCCcccchhhhhc-eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEc
Confidence 99997 6665552 222223333 344444 2 223333456677777654321 11111111 122579999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
++ |++++.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++.+.|....|..+..
T Consensus 291 ~d--Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DD--GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CC--CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99 999999999999999999887434444557999999999999999999999999999988553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-09 Score=120.07 Aligned_cols=249 Identities=18% Similarity=0.261 Sum_probs=171.6
Q ss_pred CCeEEEEEcCCCCEEEEEECC--CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADEN--ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~D--g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
..|--+.|+.. ++|..+.+ ..+++++.+.+..+..+.-.. .|.++.+ +.+.|+++-.+ .|.|||+.+
T Consensus 47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~Vrm----Nr~RLvV~Lee-~IyIydI~~ 115 (391)
T KOG2110|consen 47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRM----NRKRLVVCLEE-SIYIYDIKD 115 (391)
T ss_pred eEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEE----ccceEEEEEcc-cEEEEeccc
Confidence 34555666644 55554433 458999998888877766544 7999998 56677776655 499999955
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE--CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g--~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~ 1197 (1354)
.++...+.....+...+.. +..+..+.+++.-+ ..|.|.+||+.+-+ .+..+..|.+. +-++ .++++
T Consensus 116 ----MklLhTI~t~~~n~~gl~A----lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~-lAal-afs~~ 184 (391)
T KOG2110|consen 116 ----MKLLHTIETTPPNPKGLCA----LSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGP-LAAL-AFSPD 184 (391)
T ss_pred ----ceeehhhhccCCCccceEe----eccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCc-eeEE-EECCC
Confidence 3444222333233333322 44444455666643 57999999999999 99999988776 9999 78899
Q ss_pred CCEEEEEECCCe-EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC----c----
Q 000681 1198 GGQLAAGFVDGS-VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK----D---- 1268 (1354)
Q Consensus 1198 g~~L~sgs~DGs-VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~----~---- 1268 (1354)
|.++++++..|+ ||||.+.+++.....-++.. ...|.+++|+|+ +.+|++.|..++|++|.+.... +
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~d--s~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~ 260 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPD--SQFLAASSNTETVHIFKLEKVSNNPPESPTA 260 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCC--CCeEEEecCCCeEEEEEecccccCCCCCCCC
Confidence 999999999997 79999999985443322221 467999999999 9999999999999999886421 0
Q ss_pred ----------------------------cEEEEecCCC---CeEEEEEcCCCCEEEEEeCCCcEEEEeC---CCceEEEE
Q 000681 1269 ----------------------------AYLTIDAHRG---SLSALAVHRHAPIIASGSAKQLIKVFSL---EGEQLGTI 1314 (1354)
Q Consensus 1269 ----------------------------~v~~l~~h~~---~VtsLafspdg~~Lasgs~Dg~I~Iwd~---~g~~l~~i 1314 (1354)
...+.+.... .+..+.-.+..+.+..++.||.++.|.+ +|.....+
T Consensus 261 ~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~li 340 (391)
T KOG2110|consen 261 GTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALI 340 (391)
T ss_pred CCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEE
Confidence 0000000011 2333333456788899999999999984 36666666
Q ss_pred ec
Q 000681 1315 RY 1316 (1354)
Q Consensus 1315 ~~ 1316 (1354)
+.
T Consensus 341 k~ 342 (391)
T KOG2110|consen 341 KR 342 (391)
T ss_pred Ee
Confidence 65
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-10 Score=122.01 Aligned_cols=237 Identities=19% Similarity=0.336 Sum_probs=160.3
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEE-EEECC----
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY-ASGEV---- 1162 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Ll-a~g~D---- 1162 (1354)
...+++| ++|...+++|.++| .|||+...-+.... +...+..-.+.. +-| ..++++ +||.+
T Consensus 7 ~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~-----r~~~~~G~~~ve----MLf--R~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 7 KTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESAS-----RQFIDGGFKIVE----MLF--RSNYLALVGGGSRPKY 72 (346)
T ss_pred ceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhh-----hccccCchhhhh----Hhh--hhceEEEecCCCCCCC
Confidence 4456788 68888998888776 79999854111100 001111111111 111 234443 34433
Q ss_pred --CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000681 1163 --SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1240 (1354)
Q Consensus 1163 --g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~f 1240 (1354)
..|.|||=..+. ++.++.- ..+|.+| ... +..+++.- .+.|+||.....-+..+.+.+.... ..+.+ +
T Consensus 73 ~pNkviIWDD~k~~-~i~el~f--~~~I~~V-~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~--~ 142 (346)
T KOG2111|consen 73 PPNKVIIWDDLKER-CIIELSF--NSEIKAV-KLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCS--L 142 (346)
T ss_pred CCceEEEEecccCc-EEEEEEe--ccceeeE-EEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEe--e
Confidence 479999977777 7777765 3458998 443 44565554 5789999988554455555444322 22333 3
Q ss_pred ecCCCCCEEEEEE-CCCcEEEEeCCCCCc-cEEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEe-CCCceEEEEec
Q 000681 1241 QPGLDPAKIVSAS-QAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1241 sp~~~g~~Lasgs-~DG~I~IWDl~~~~~-~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~-I~Iwd-~~g~~l~~i~~ 1316 (1354)
.|..+..+||.-+ .-|.|+|-|+..... +-..+.+|...|.|++.+-+|.++||+|..|+ |+||| .+|+.+.+++-
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 3442245555544 569999999987632 34788999999999999999999999999997 69999 78999999875
Q ss_pred cCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1317 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1317 ~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+. ....|.+++|+|+..+||++++-|+|.||.
T Consensus 223 G~------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 223 GV------DRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred CC------chheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 12 347899999999999999999999999973
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=137.77 Aligned_cols=215 Identities=16% Similarity=0.195 Sum_probs=155.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~-~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
++|+|+.|+.+|.+|++|++|-.+.|||....+++..+. +|. ..|.+++|.|..++.++++|..|..|+++|+...
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 689999999999999999999999999999888887765 677 8999999999889999999999999999999753
Q ss_pred CCcce---EEeeeecccCCCCCcccceeEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCC--------CCCCe
Q 000681 1121 KDKQK---LVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSS--------SDCSI 1188 (1354)
Q Consensus 1121 ~~~~~---lvs~~~~l~~h~~~V~si~~~v~~sp~~-~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~--------~~~~V 1188 (1354)
++... +....+....|...|.. ++-.|++ ..+.+++.||+|+-+|++....|-.....+ .--..
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKr----ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKR----IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhh----eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 22211 22223445678888887 5555777 678888999999999998744121111111 01125
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-----------------eeEeecCCCCCC-----------CCeEEEEE
Q 000681 1189 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----------------LVCSTRPHTQQV-----------ERVVGISF 1240 (1354)
Q Consensus 1189 tsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~-----------------~~~~~~~~~~h~-----------~~I~sv~f 1240 (1354)
.|++..+.+..+|++|+.|-..++||.|...+ .+.-+. .+|. ..++-+.|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeEEEEE
Confidence 66755666778999999999999999652110 011110 1121 12566789
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000681 1241 QPGLDPAKIVSASQAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1241 sp~~~g~~Lasgs~DG~I~IWDl~~~~ 1267 (1354)
+|+ |..|+..-..-.|+++|+..++
T Consensus 282 npN--GtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 282 NPN--GTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCC--CcEEEEeeCCeEEEEEeecCCC
Confidence 999 7777766666689999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=139.58 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=153.8
Q ss_pred CcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCce--EEEeeCCCCCCCCeEEEEEEe
Q 000681 1031 NPIACWDTRFE---------KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVN 1096 (1354)
Q Consensus 1031 ~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~D---g~I~IWd~~tg~~--l~~~~~h~~~~~~ItsL~f~~ 1096 (1354)
..|.+||.... ..+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.++. ..+.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~------~~~~w-- 255 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN------GAPAF-- 255 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc------CceeE--
Confidence 47888886543 458899999999999887643 3699999988753 33333333 35778
Q ss_pred eCCCCEEEEEe-CCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCc
Q 000681 1097 ELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQ 1174 (1354)
Q Consensus 1097 s~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~ 1174 (1354)
++||+.|+.++ .+|.+.||.+....+... .+..+...+.. ..|+|++..|+.++ .+|...||++....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~------~lt~~~~~~~~----~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPS------QLTSGAGNNTE----PSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeE------eeccCCCCcCC----EEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 78999888765 688877775533223222 23445544555 89999999887765 57888888765432
Q ss_pred eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000681 1175 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1254 (1354)
Q Consensus 1175 ~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~ 1254 (1354)
.....+ .+.. .+. .++++|+.++.++.++ +.+||+.+++.. ...... ...++.|+|+ |+.|+.++.
T Consensus 326 ~~~~~l-~~~~---~~~-~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~-----~~~~~~~sPd--G~~i~~~s~ 391 (429)
T PRK01742 326 GGASLV-GGRG---YSA-QISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTF-----LDESPSISPN--GIMIIYSST 391 (429)
T ss_pred CCeEEe-cCCC---CCc-cCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCC-----CCCCceECCC--CCEEEEEEc
Confidence 022222 2222 334 5789999998888765 555999887632 221111 2346789999 999999999
Q ss_pred CCcEEEEeCC--CCCccEEEEecCCCCeEEEEEcCC
Q 000681 1255 AGDIQFLDIR--NHKDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1255 DG~I~IWDl~--~~~~~v~~l~~h~~~VtsLafspd 1288 (1354)
+|.+.+|++. ++ .....+..|.+.+...+|||.
T Consensus 392 ~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 392 QGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEEEEECCC-CceEEccCCCCCCCCcccCCC
Confidence 9988888763 34 577888888888999999985
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=144.70 Aligned_cols=274 Identities=12% Similarity=0.118 Sum_probs=192.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCC
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1122 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~-~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~ 1122 (1354)
+++.++-. ++|.+|. .-.|.+||+.++..+..+...... ...+.... .-.+.+++++..-+.+.+=+... +
T Consensus 10 l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~--~ 81 (967)
T KOG0974|consen 10 LNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN--Q 81 (967)
T ss_pred ccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh--h
Confidence 33444433 6776665 667999999988666554322100 00000000 01345666666554444322211 1
Q ss_pred cceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEE--EEEcCCCCE
Q 000681 1123 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL--TASQVHGGQ 1200 (1354)
Q Consensus 1123 ~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl--~~~s~~g~~ 1200 (1354)
.+......+.. ..+..++..++.+..+..+.+||...+. ....+.........++ .-++.+.-+
T Consensus 82 ---------~~~~~s~wi~g----~~l~~e~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 82 ---------IIERFSDWIFG----AKLFEENKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred ---------hhhhccccccc----cchhhhcceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEEE
Confidence 11112222222 2223367788888899999999998877 6666654333212221 124455668
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
+++|+.-|.|.+|+....+... ...||.+.|.++.++-+ |.++++.|.|.++++|++.+.+....+.-+|...|
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~----~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI----RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEeccccccEEEEeccccCCcc----eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCccccccccee
Confidence 9999999999999998443333 34588999999999998 99999999999999999999854444667899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.+.|+|+ .+++++.|.+.++|+.++..+..++. |. ...|..++.++....++|++.||.+++|+
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~-h~------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDE-HS------GKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceehhhhh-hh------hcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999998 99999999999999999999998887 65 47899999999999999999999999996
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=121.76 Aligned_cols=287 Identities=18% Similarity=0.215 Sum_probs=181.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCC
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1122 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~ 1122 (1354)
.+..++||+.-..+|++..|..|+|||-.. +....++... ...|++++|-+ -.+..|++|+.. -|.||.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--QrnvtclawRP-lsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--QRNVTCLAWRP-LSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--hcceeEEEecc-CCcceeeeeecc-eeEEEEcCcccc
Confidence 577899999777889999999999999776 4444444322 26899999953 344566666654 589998743111
Q ss_pred cceEE---e----eeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEE
Q 000681 1123 KQKLV---T----AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1123 ~~~lv---s----~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~ 1194 (1354)
....+ + ..-..++| ..|++ +.|++++..+++++ .|..|+|||..++. ++.-.....++ ++-+ -+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVts----mqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~glgg-~slL-kw 246 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTS----MQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKGLGG-FSLL-KW 246 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeE----EEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccCCCc-eeeE-EE
Confidence 11100 0 00112344 45555 99999999999987 78899999999998 66555443344 7777 78
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc-----
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA----- 1269 (1354)
Q Consensus 1195 s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~----- 1269 (1354)
+|+|.+|.++.-|+..++|...... ....+... .+.|...+|+|. |..|+-.+. |.-++|.+....++
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~w-t~erw~lg---sgrvqtacWspc--GsfLLf~~s-gsp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSW-TKERWILG---SGRVQTACWSPC--GSFLLFACS-GSPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccc-eecceecc---CCceeeeeecCC--CCEEEEEEc-CCceEEEEeecCCCccccC
Confidence 9999999999999999999654332 11112122 258999999999 665554432 33344443321100
Q ss_pred ---------EEEEe-----cC----CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCceEEEEeccCCcccc
Q 000681 1270 ---------YLTID-----AH----RGSLSALAVHRHAPIIASGSAK--------QLIKVFSLEGEQLGTIRYHHPSFMA 1323 (1354)
Q Consensus 1270 ---------v~~l~-----~h----~~~VtsLafspdg~~Lasgs~D--------g~I~Iwd~~g~~l~~i~~~h~~fl~ 1323 (1354)
+..+. .. .+.+.+++|.|.|.+||+.-.. ..|.+||........+.+ -++.+
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~--cg~i~ 397 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY--CGMIG 397 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe--ccccc
Confidence 00010 11 4678999999999999987443 346778865555554442 11222
Q ss_pred ccCCCeEEEEEec---CCCEEEEEECCCeEEEc
Q 000681 1324 QKIGSVNCLTFHP---YQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1324 ~~~~~V~sLafsp---dg~~Lasgs~Dg~V~IW 1353 (1354)
+ ....-++|+| ++.+|..+=+.|.+.-|
T Consensus 398 g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 398 G--EYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred C--CCCceEEeeecccCCcEEEEEeccCceEee
Confidence 1 2244566665 34566666666766544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=145.12 Aligned_cols=275 Identities=11% Similarity=0.142 Sum_probs=199.8
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeC
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~ 1081 (1354)
+....+..-+..++++..|-.+++|..+++ ..|+.++.+...-++++++.|..|++|...++..+..+.+
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 444556677788999988889999998875 6799999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~ 1161 (1354)
|. +.|++++|. |-. +.+.||++++||..- .. .+..-+.+..... ....++-+...+..+++++.
T Consensus 273 ht---gavtaiafs--P~~----sss~dgt~~~wd~r~--~~--~~y~prp~~~~~~---~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 273 HT---GAVTAIAFS--PRA----SSSDDGTCRIWDARL--EP--RIYVPRPLKFTEK---DLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cc---cceeeeccC--ccc----cCCCCCceEeccccc--cc--cccCCCCCCcccc---cceeeeeccccccccccccC
Confidence 99 999999994 433 778999999999852 00 0100011111111 11122555666778888889
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
|+.-..|...... +.. .. +.-+...+....+.+++-.+-.+.+|++.++. ... ...+|...+..+.+|
T Consensus 337 d~ea~n~e~~~l~-~~~------~~-lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H---~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 337 DGEARNHEFEQLA-WRS------NL-LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLH---NLMGHSDEVYVLDVH 404 (1113)
T ss_pred CcccccchhhHhh-hhc------cc-eEEEeccccccccceeeeeeeEeeeeecccch-hhh---hhcccccceeeeeec
Confidence 9888888765432 110 00 00000111122466677778889999999886 333 344778999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEec
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1316 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~ 1316 (1354)
|- +..+..+++.||...|||+-.+ .+++.+....+.+...+|+++|..++....-|.++|... .++.....++
T Consensus 405 pf-n~ri~msag~dgst~iwdi~eg-~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 405 PF-NPRIAMSAGYDGSTIIWDIWEG-IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKY 478 (1113)
T ss_pred CC-CcHhhhhccCCCceEeeecccC-CcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcccccccc
Confidence 98 6778889999999999999988 577766655667888899999999999888899999984 3444444443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=125.77 Aligned_cols=272 Identities=13% Similarity=0.161 Sum_probs=184.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCCeEEEEEccCCCCcc
Q 000681 1046 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1046 sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~-tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
-.+|+|+|+++|+.+ +-.+.|-|.++-+..+.|..-. .|.-+.| ..|..+++ +...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cld----ki~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCLD----KIVYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHHH----Hhhheee--eccceeeeeeeeccceEEEEEeecceeEE
Confidence 468999999999998 5588899988877666555433 7788888 55665554 45678899999995522111
Q ss_pred eEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEE
Q 000681 1125 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1203 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~s 1203 (1354)
.+..-..++.+ +.|+|+|+.++..+ .+-.|.||.+.+.+ +. -++ +....+..+ .+.++|++.+.
T Consensus 86 -------kIdeg~agls~----~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~-~~~-~pK~~~kg~-~f~~dg~f~ai 150 (447)
T KOG4497|consen 86 -------KIDEGQAGLSS----ISWSPDGRHILLTSEFDLRITVWSLNTQK-GY-LLP-HPKTNVKGY-AFHPDGQFCAI 150 (447)
T ss_pred -------EeccCCCccee----eeECCCcceEeeeecceeEEEEEEeccce-eE-Eec-ccccCceeE-EECCCCceeee
Confidence 13444455555 89999998777664 78899999999877 33 222 222336666 66778877665
Q ss_pred EEC------------------------------------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000681 1204 GFV------------------------------------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1247 (1354)
Q Consensus 1204 gs~------------------------------------DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~ 1247 (1354)
.+. +..+-+||.--.-. +..+ ...-.+..+.|+|. ++
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aY----e~~lG~k~v~wsP~--~q 223 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAY----ERGLGLKFVEWSPC--NQ 223 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeee----eeccceeEEEeccc--cc
Confidence 532 12345555432221 1111 11256889999999 99
Q ss_pred EEEEEECCCcEEEEeCCCCC------------------------c-----------------------------------
Q 000681 1248 KIVSASQAGDIQFLDIRNHK------------------------D----------------------------------- 1268 (1354)
Q Consensus 1248 ~Lasgs~DG~I~IWDl~~~~------------------------~----------------------------------- 1268 (1354)
+|+.|+.|+.+|+.+--+.+ +
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 99999999999886632211 0
Q ss_pred cEEEEe------cCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCE
Q 000681 1269 AYLTID------AHRGSLSALAVHRHAPIIASGSA--KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1340 (1354)
Q Consensus 1269 ~v~~l~------~h~~~VtsLafspdg~~Lasgs~--Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~ 1340 (1354)
.+..++ ...-.+.-++|++|..++||-.+ -+.+-+||+....+..+-. . ..+|....|+|....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Q-------k~piraf~WdP~~pr 375 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-Q-------KHPIRAFEWDPGRPR 375 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-h-------ccceeEEEeCCCCce
Confidence 000000 00124678999999999998754 3679999988777665544 2 368999999999999
Q ss_pred EEEEECCCeEEEcC
Q 000681 1341 LAAGSADACVSIHS 1354 (1354)
Q Consensus 1341 Lasgs~Dg~V~IWd 1354 (1354)
|+.+....++++|.
T Consensus 376 L~vctg~srLY~W~ 389 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWA 389 (447)
T ss_pred EEEEcCCceEEEEc
Confidence 99998888888884
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-10 Score=124.89 Aligned_cols=233 Identities=10% Similarity=0.131 Sum_probs=171.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~ 1166 (1354)
.+|++.+| +.|...++++.....|.||.... . .+-...+++..|...|++ ++|.+..+.|++++.|+.-+
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~--~--~~w~~~htls~Hd~~vtg----vdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLG--A--DLWEPAHTLSEHDKIVTG----VDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecC--C--CCceeceehhhhCcceeE----EeecCCCCceeEccCCCCcc
Confidence 68999999 78999999999999999999854 1 222233778999999998 99999999999999999999
Q ss_pred EEECCCC-c-eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000681 1167 LWDLEKE-Q-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1167 VWDl~t~-~-~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~ 1244 (1354)
||....+ + .+.-.+..+... .+++ -++|.++.|++|+....|.||-......-......-..+.+.|++++|+|+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrA-At~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn- 157 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRA-ATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN- 157 (361)
T ss_pred ccccCCCCeeccceeEEEeccc-eeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence 9998433 2 023333334344 8999 778999999999999999999887654321111111234588999999999
Q ss_pred CCCEEEEEECCCcEEEEeCC-----CC------------CccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1245 DPAKIVSASQAGDIQFLDIR-----NH------------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1245 ~g~~Lasgs~DG~I~IWDl~-----~~------------~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+-.++.|+.|+..++|..- .. ++.+..+....+.+..+.|+|.|..|+-.+.|+.|.+=|..
T Consensus 158 -nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 158 -NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred -cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 8999999999999998642 10 02333444456789999999999999999999999999966
Q ss_pred Cce--EEEEeccCCccccccCCCeEEEEEecCCCEE
Q 000681 1308 GEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1341 (1354)
Q Consensus 1308 g~~--l~~i~~~h~~fl~~~~~~V~sLafspdg~~L 1341 (1354)
+.. +..+...+ -+..++.|-.+...+
T Consensus 237 ~p~~~v~~~~~~~--------lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 237 GPSERVQSVATAQ--------LPLLSVSWISENSVV 264 (361)
T ss_pred CCchhccchhhcc--------CCceeeEeecCCcee
Confidence 542 44433311 345566665444333
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=133.12 Aligned_cols=208 Identities=18% Similarity=0.265 Sum_probs=158.2
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc
Q 000681 1054 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI 1133 (1354)
Q Consensus 1054 ~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l 1133 (1354)
+.++.++.||.+.|.+- .++..+.+..|. +.|.+-.| ++||.-|+++|.||.|+||.-. |-.. .++
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~---~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrs---GMLR-----Stl 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHA---AAISSGRW--SPDGAGLLTAGEDGVIKIWSRS---GMLR-----STV 141 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhh---hhhhhccc--CCCCceeeeecCCceEEEEecc---chHH-----HHH
Confidence 36788888999999874 477778889999 89999999 7999999999999999999852 2211 123
Q ss_pred cCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEE
Q 000681 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1213 (1354)
Q Consensus 1134 ~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIw 1213 (1354)
.....+|+| ++|.|+++.++.+.. +.+.|=-+.... .+..++.|.+- |.++ .+++..+++++|+.|-..++|
T Consensus 142 ~Q~~~~v~c----~~W~p~S~~vl~c~g-~h~~IKpL~~n~-k~i~WkAHDGi-iL~~-~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 142 VQNEESIRC----ARWAPNSNSIVFCQG-GHISIKPLAANS-KIIRWRAHDGL-VLSL-SWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred hhcCceeEE----EEECCCCCceEEecC-CeEEEeeccccc-ceeEEeccCcE-EEEe-ecCccccceeecCCceeEEee
Confidence 445567777 999999888777643 456666666665 67778887665 9999 677889999999999999999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEE
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~La 1293 (1354)
|-.... +. ....|..+|++++|.|+ ..++.||.+ +.++ . ....+.|..++|++||..++
T Consensus 214 D~~G~~-Lf----~S~~~ey~ITSva~npd---~~~~v~S~n-t~R~---~---------~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 214 DAQGAN-LF----TSAAEEYAITSVAFNPE---KDYLLWSYN-TARF---S---------SPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred cccCcc-cc----cCChhccceeeeeeccc---cceeeeeee-eeee---c---------CCCccceEEEEEcCCCceee
Confidence 976443 33 23356789999999997 455556542 3331 1 12356899999999999999
Q ss_pred EEeCCCcEEEE
Q 000681 1294 SGSAKQLIKVF 1304 (1354)
Q Consensus 1294 sgs~Dg~I~Iw 1304 (1354)
+|+..|.|.+=
T Consensus 273 ~gt~~G~v~~A 283 (737)
T KOG1524|consen 273 CGTSTGQLIVA 283 (737)
T ss_pred ccccCceEEEe
Confidence 99998887553
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-09 Score=116.25 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=201.8
Q ss_pred eeecCCCCceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCCEEE-EEECCCcEEEEECCCCceEEEeeCCC
Q 000681 1014 KCQRSCNSFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHD 1083 (1354)
Q Consensus 1014 ~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~La-tgs~Dg~I~IWd~~tg~~l~~~~~h~ 1083 (1354)
-+.+++++..+++.... .+-+-|..+- ..|.-+.|.-|..+++ +...++.|.+|++...+-...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46788999888887655 4555565543 7788899998887655 55678899999999888888888777
Q ss_pred CCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-
Q 000681 1084 FPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE- 1161 (1354)
Q Consensus 1084 ~~~~~ItsL~f~~s~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~- 1161 (1354)
.++.+++| ++||+ +|.+...+-.|.||.+.+..+ ..+ +..+..+.. ++|+|++.+.+..+.
T Consensus 92 ---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~--~~~------~~pK~~~kg----~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 92 ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKG--YLL------PHPKTNVKG----YAFHPDGQFCAILSRR 154 (447)
T ss_pred ---CcceeeeE--CCCcceEeeeecceeEEEEEEecccee--EEe------cccccCcee----EEECCCCceeeeeecc
Confidence 78999999 78995 556667789999999976222 111 212222222 555555554433321
Q ss_pred -----------------------------------CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC
Q 000681 1162 -----------------------------------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1206 (1354)
Q Consensus 1162 -----------------------------------Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~ 1206 (1354)
+..+-|||.--+- .+..+. .+-.+..+ .++|.++++++|+.
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-kv~aYe--~~lG~k~v-~wsP~~qflavGsy 230 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-KVYAYE--RGLGLKFV-EWSPCNQFLAVGSY 230 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-eeeeee--eccceeEE-EeccccceEEeecc
Confidence 1224455543333 222222 22237777 78899999999999
Q ss_pred CCeEEEEECCCCCe-----------------------------------------------------------eeEeecC
Q 000681 1207 DGSVRLYDVRTPDM-----------------------------------------------------------LVCSTRP 1227 (1354)
Q Consensus 1207 DGsVrIwDlr~~~~-----------------------------------------------------------~~~~~~~ 1227 (1354)
|+.+|+.+--+-+. .+...+.
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998855322110 0000000
Q ss_pred ---CCCCCCCeEEEEEecCCCCCEEEEEECC--CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 000681 1228 ---HTQQVERVVGISFQPGLDPAKIVSASQA--GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1302 (1354)
Q Consensus 1228 ---~~~h~~~I~sv~fsp~~~g~~Lasgs~D--G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~ 1302 (1354)
.......+.-++|+++ ..+++|-... ..+-+||+++. .+..+-....+|....|+|..+.|+.+.....++
T Consensus 311 ~tD~pnPk~g~g~lafs~D--s~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY 386 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCD--STYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLY 386 (447)
T ss_pred CCCCCCcccccceeeecCC--ceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEE
Confidence 0011234667899998 7777776543 56999999976 3333334567899999999999888887778899
Q ss_pred EEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000681 1303 VFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1303 Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
+|...|........ + +-.|..+.|+-+|..++..+.|.
T Consensus 387 ~W~psg~~~V~vP~--~------GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 387 FWAPSGPRVVGVPK--K------GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEcCCCceEEecCC--C------CceeeeEEecCCCcEEEEEcCCc
Confidence 99988854443332 2 24699999999999999998885
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=136.85 Aligned_cols=217 Identities=20% Similarity=0.335 Sum_probs=155.4
Q ss_pred cccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC-CEEEEEECCCeE
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSV 1210 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g-~~L~sgs~DGsV 1210 (1354)
.+.||.+.|.+ ++|+.+|..|++|++|-.+.|||.-..+ .+..+...+...|.++.+.+..+ +++++|..|..|
T Consensus 45 eL~GH~GCVN~----LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 45 ELTGHTGCVNC----LEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhccccceecc----eeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 47899999999 9999999999999999999999999888 88888877777799998877655 567889999999
Q ss_pred EEEECCCCC------eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe---------c
Q 000681 1211 RLYDVRTPD------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID---------A 1275 (1354)
Q Consensus 1211 rIwDlr~~~------~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~---------~ 1275 (1354)
++||+...+ ........+..|...|..++..|+ +...+.+++.||+|+-+|+|....+-.... .
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999998522 112222244567789999999998 458999999999999999997421211111 1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCC---------Cc----------eEEEEeccCC-cccc---ccCCCeEE
Q 000681 1276 HRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE---------GE----------QLGTIRYHHP-SFMA---QKIGSVNC 1331 (1354)
Q Consensus 1276 h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd~~---------g~----------~l~~i~~~h~-~fl~---~~~~~V~s 1331 (1354)
.--...|++++|..+ +||.|+.|-..++||.. |. .+.-+...|. ...+ .....++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 122567899999766 89999999999999931 11 1111111121 0001 11122566
Q ss_pred EEEecCCCEEEEEECCCeEEEcC
Q 000681 1332 LTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1332 Lafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
++|+|+|.-|++.-....|+++|
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEe
Confidence 78999997666555555777764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.1e-11 Score=136.11 Aligned_cols=278 Identities=16% Similarity=0.230 Sum_probs=195.0
Q ss_pred heeecCCCCceEEEeeCCCcEEEEeCCCC-----------CCeEEEEEcCC--CCEEEEEECCCcEEEEECCC-Cce--E
Q 000681 1013 AKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPF--SPIVVAADENERIKIWNYEE-DTL--L 1076 (1354)
Q Consensus 1013 ~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspd--g~~Latgs~Dg~I~IWd~~t-g~~--l 1076 (1354)
....+...+..+++++.+-+|.+|||..+ ..|..-+|-|+ ...+++++.||.|++=.+.. +.. .
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t 225 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT 225 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence 34455556667888888889999999876 33555568774 45789999999999986653 322 3
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCC-CcccceeEEEEecCCC-
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP-GVRCSNVVVDWQQQSG- 1154 (1354)
Q Consensus 1077 ~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~-~V~si~~~v~~sp~~~- 1154 (1354)
+.+..|. +.|..++..+ .+..-|++++.|+.+.-+|+........+. .-..+.. .|.- ..++.+|.+.
T Consensus 226 ~rl~~h~---g~vhklav~p-~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~~~~~~~v~L--~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 226 KRLAPHE---GPVHKLAVEP-DSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CREADEKERVGL--YTIAVDPRNTN 295 (559)
T ss_pred eeccccc---CccceeeecC-CCCCcccccccccceeeeeeccCCccceee----eeccCCccceee--eeEecCCCCcc
Confidence 3455666 7898888842 456789999999999999987633222222 1122222 1211 1266677665
Q ss_pred eEEEEECCCeEEEEECCCCce-----eeeeec-----CCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCe----
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQ-----MVNPIP-----SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM---- 1220 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~-----~v~~i~-----~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~---- 1220 (1354)
.++++|.|..+++||.++-.. .+..+- ......|+++ .++.++..+++...|-.|++|.-..+.-
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl-~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL-VYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE-EecCCccceeeeecccceEEeccccccCCCCC
Confidence 677788999999999875330 112221 1223358999 7777888888899999999995432211
Q ss_pred -------eeEeecCCCCCC--CCeEEEEE-ecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1221 -------LVCSTRPHTQQV--ERVVGISF-QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1221 -------~~~~~~~~~~h~--~~I~sv~f-sp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
.++. ..+||. ..|..+-| -|. ..++++||.-|.|.||+-.++ +.+..+.+-..-|+||.-||+-+
T Consensus 375 ~~s~~~~~~k~--vYKGHrN~~TVKgVNFfGPr--sEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 375 PSSPREQYVKR--VYKGHRNSRTVKGVNFFGPR--SEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLP 449 (559)
T ss_pred CCcchhhccch--hhcccccccccceeeeccCc--cceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCc
Confidence 1111 133443 34777766 455 889999999999999999887 78888888777999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 000681 1291 IIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~ 1306 (1354)
+||+++-|..||||.-
T Consensus 450 vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 450 VLASSGIDHDVKIWTP 465 (559)
T ss_pred hhhccCCccceeeecC
Confidence 9999999999999984
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-09 Score=128.07 Aligned_cols=235 Identities=12% Similarity=0.094 Sum_probs=156.1
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEEccCCCCcceEEeeeecccCCCCC
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1139 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1139 (1354)
..|.+||.+.... ..+..+. ..+.+..| ++||+.|+..+. +..|.+|++.. ++.+.+ ..+.++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~---~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l---~~~~~~--- 244 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV---ASFPRH--- 244 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCC---CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCC--CCeEEc---cCCCCC---
Confidence 4688888875433 3344444 57888999 789998886542 45789999865 433332 112222
Q ss_pred cccceeEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC-Ce--EEEE
Q 000681 1140 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GS--VRLY 1213 (1354)
Q Consensus 1140 V~si~~~v~~sp~~~~Lla~-g~Dg--~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D-Gs--VrIw 1213 (1354)
+.. ..|+|++..|+.. ..+| .|++||+.++. .. .+..+.. .+... .++++|+.|+..+.+ |. |.++
T Consensus 245 ~~~----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~-~lt~~~~-~~~~~-~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 245 NGA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRS-NNTEP-TWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred cCC----eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EccCCCC-CcCce-EECCCCCEEEEEeCCCCCceEEEE
Confidence 333 7899999988876 3344 59999998877 43 3333322 35666 678999988877754 44 4445
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|+.+++ ..... . +........|+|+ |+.|+..+.+ ..|.+||+.++. ...+... .......|+|||+
T Consensus 317 d~~~g~-~~~lt-~---~~~~~~~~~~SpD--G~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~ 386 (429)
T PRK03629 317 NINGGA-PQRIT-W---EGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGT 386 (429)
T ss_pred ECCCCC-eEEee-c---CCCCccCEEECCC--CCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCC
Confidence 666554 22221 1 1234567889999 8888776643 358889998772 3344322 2345678999999
Q ss_pred EEEEEeCCCc---EEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1291 IIASGSAKQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1291 ~Lasgs~Dg~---I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
+|+.++.++. +.+++++|.....+.. |. +.+...+|+|-
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G~~~~~l~~-~~-------~~~~~p~Wsp~ 428 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 428 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCCeEECcc-CC-------CCcCCcccCCC
Confidence 9998887764 7788899988888876 55 56788888874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=128.64 Aligned_cols=174 Identities=15% Similarity=0.202 Sum_probs=129.7
Q ss_pred cCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC----e---
Q 000681 1151 QQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----M--- 1220 (1354)
Q Consensus 1151 p~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~---~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~----~--- 1220 (1354)
+.+-.++++-.-|.|.+.|....+ ..+.+.. -....|+++.|...+...|+++..+|.+++||..... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 346678888888999999977643 2221111 1224599999988888999999999999999864210 0
Q ss_pred ------eeE--eecC---------CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEE
Q 000681 1221 ------LVC--STRP---------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1221 ------~~~--~~~~---------~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsL 1283 (1354)
... ..+. +.-..+.|...+|+|+ |.+||+.+.||.+||||..+. +.+..++..-+...|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCV 338 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEE
Confidence 000 0000 0001357889999999 999999999999999999987 6777777777899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEec
Q 000681 1284 AVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1284 afspdg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafsp 1336 (1354)
+|+|||++|++|+.|-.|.||.+. .+.+..=.+ | .+.|+.++|.|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-H-------kSWVs~VaFDp 384 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-H-------KSWVSVVAFDP 384 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEeccc-c-------ccceeeEeecc
Confidence 999999999999999999999954 555555444 4 48899999984
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-09 Score=117.48 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=176.1
Q ss_pred CCcEEEEECCCCceEE--EeeCCCCCCCCeEEEEEEee-CCCC-EEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCC
Q 000681 1062 NERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNE-LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1137 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~--~~~~h~~~~~~ItsL~f~~s-~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1137 (1354)
.|.+.+|++.+.+... .++... ...+..|.|.-- .++. .++-+-.+|.|.++.......... ++.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d--ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD--TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKK 118 (339)
T ss_pred ccceEEEeecccccCccceeeeec--ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhh
Confidence 4678888887654433 221111 146777777432 2444 566677889999998754211111 12233222
Q ss_pred CCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000681 1138 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1216 (1354)
Q Consensus 1138 ~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~-~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr 1216 (1354)
..+. ..+++.|++.+..++++-.+|.+.+-+..... +.++.++.|.-. +....+...+.+.+.+|+.||.+..||+|
T Consensus 119 i~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 ISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEec
Confidence 2222 35668999999999999899998865554433 123467776544 55554666677999999999999999999
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCC--CEEEE
Q 000681 1217 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA--PIIAS 1294 (1354)
Q Consensus 1217 ~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg--~~Las 1294 (1354)
.++ ...+...+-|...|.++.-+|. .+.+|++|+.|-.|++||.|+.++++..-.. .+.|+.+.+||.- .++++
T Consensus 197 ~p~--~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 197 IPK--TFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred CCc--ceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHH
Confidence 554 2334344567799999999887 7899999999999999999976667755442 4789999999953 35555
Q ss_pred EeCCCcEEEEeCCCceEE---EEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCeEE-Ec
Q 000681 1295 GSAKQLIKVFSLEGEQLG---TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVS-IH 1353 (1354)
Q Consensus 1295 gs~Dg~I~Iwd~~g~~l~---~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~-Dg~V~-IW 1353 (1354)
+-.+| .+|-+.+..... .+.. +. .|.+-...-.|......||||+. |+.++ +|
T Consensus 273 CMh~G-~ki~~~~~~~~e~~~~~~s-~~----~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 273 CMHNG-AKILDSSDKVLEFQIVLPS-DK----IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHhcC-ceEEEecccccchheeeec-cc----cccceeeccccccccceeeeeeccccceeeee
Confidence 54444 566664322211 1111 11 12345566666555578888775 77644 66
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=127.08 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=160.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCceEE------EeeCCCCCCCCeEEEEE---EeeCCCCEEEEEeCCCeEEEEE
Q 000681 1046 TALLQPFSPIVVAADENERIKIWNYEEDTLLN------SFDNHDFPDKGISKLCL---VNELDVSLLLVASCNGNIRIWK 1116 (1354)
Q Consensus 1046 sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~------~~~~h~~~~~~ItsL~f---~~s~d~~~L~tgs~DG~IrIWd 1116 (1354)
...++-.|++|+..- ...+.+|++..+..+. .+++. .-++-.| .-.+.+--|+.|-.-|.|.+.|
T Consensus 128 ~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt-----~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGT-----SPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCC-----CCceecccccccCCCCcceEEeeccCceEEec
Confidence 334444555555443 4467788776432221 12222 2222222 1124666788888889999888
Q ss_pred ccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EECCCeEEEEECCCCc---------------------
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQ--------------------- 1174 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g~Dg~I~VWDl~t~~--------------------- 1174 (1354)
.... .-.++...-+ .-....+++ +.|-+.+..++. +-.+|.+++||.+-..
T Consensus 202 p~~~-~~sklfne~r--~i~ktsvT~----ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ 274 (636)
T KOG2394|consen 202 PINF-EVSKLFNEER--LINKSSVTC----IKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS 274 (636)
T ss_pred chhh-HHHHhhhhcc--cccccceEE----EEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence 7441 1111110000 001234444 899887665554 5689999999764210
Q ss_pred ------eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000681 1175 ------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1175 ------~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~ 1248 (1354)
.++..+....+ +|... +++++|++|++.+.||.+||||..+.+ +...++..- +...|++|+|+ |++
T Consensus 275 ksk~~rNPv~~w~~~~g-~in~f-~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYF---GGLLCvcWSPD--GKy 346 (636)
T KOG2394|consen 275 KSKKTRNPVARWHIGEG-SINEF-AFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYF---GGLLCVCWSPD--GKY 346 (636)
T ss_pred eccccCCccceeEeccc-cccce-eEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhc---cceEEEEEcCC--ccE
Confidence 01111111122 47778 677899999999999999999998876 555554443 78999999999 999
Q ss_pred EEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCC-----------------------------------C----
Q 000681 1249 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----------------------------------A---- 1289 (1354)
Q Consensus 1249 Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspd-----------------------------------g---- 1289 (1354)
|++|++|.-|.||.+... ..+..-++|+.+|+.++|.|. +
T Consensus 347 IvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s 425 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLS 425 (636)
T ss_pred EEecCCcceEEEEEeccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccc
Confidence 999999999999999887 688888999999999999831 1
Q ss_pred ---------CEEEEEeCCCcEEEEeCCCceEEE
Q 000681 1290 ---------PIIASGSAKQLIKVFSLEGEQLGT 1313 (1354)
Q Consensus 1290 ---------~~Lasgs~Dg~I~Iwd~~g~~l~~ 1313 (1354)
-.|.+.+.|-.+.+||++...+..
T Consensus 426 ~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 426 SFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccceEEEeecccccceEEEEecchhhccc
Confidence 146677889999999987555443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=117.10 Aligned_cols=157 Identities=22% Similarity=0.339 Sum_probs=114.8
Q ss_pred EEEEecCCCeEEEEEC----------CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEE--ECCCeEEEE
Q 000681 1146 VVDWQQQSGYLYASGE----------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG--FVDGSVRLY 1213 (1354)
Q Consensus 1146 ~v~~sp~~~~Lla~g~----------Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sg--s~DGsVrIw 1213 (1354)
.+.|+++|.+|++-.. -|...+|.++.....+..+......+|.++ .++|+|+.|++. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~-~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV-AWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE-EECcCCCEEEEEEccCCcccEEE
Confidence 4889999988877533 134556655332214555655445559999 788899887554 467899999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~---DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|++ .+ .+..+. ...+..+.|+|+ |++|++|+. .|.|.+||.++. +.+.+.. | ..++.++|+|+|+
T Consensus 89 d~~-~~-~i~~~~-----~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr 156 (194)
T PF08662_consen 89 DVK-GK-KIFSFG-----TQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGR 156 (194)
T ss_pred cCc-cc-EeEeec-----CCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCC
Confidence 997 33 233331 256789999999 999999874 467999999976 5666554 3 3578999999999
Q ss_pred EEEEEeC------CCcEEEEeCCCceEEEEe
Q 000681 1291 IIASGSA------KQLIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1291 ~Lasgs~------Dg~I~Iwd~~g~~l~~i~ 1315 (1354)
+|++++. |+.++||+..|+.+....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998864 788999999999887654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=132.48 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=193.8
Q ss_pred eecCCCCceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCC
Q 000681 1015 CQRSCNSFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP 1085 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~ 1085 (1354)
..+...|.+++.++..|.+..+||.+. ..|.++.|-++.+++|++- ...+.|||-. |..+..++.+.
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~~~-- 210 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKRHI-- 210 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhhcC--
Confidence 345667788999999999999999987 6789999999999999887 7789999966 88888888887
Q ss_pred CCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeE
Q 000681 1086 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1086 ~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I 1165 (1354)
.|..+.|. +..-+|++++..|.++--|+.+ | +++..+++ -.+.+.. ++-+|-+..+-+|...|+|
T Consensus 211 --~v~rLeFL--PyHfLL~~~~~~G~L~Y~DVS~--G--klVa~~~t---~~G~~~v----m~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 211 --RVARLEFL--PYHFLLVAASEAGFLKYQDVST--G--KLVASIRT---GAGRTDV----MKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred --chhhhccc--chhheeeecccCCceEEEeech--h--hhhHHHHc---cCCccch----hhcCCccceEEEcCCCceE
Confidence 89999996 5777888999999999999966 3 33422222 2233333 6677888888888999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000681 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1166 ~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~ 1245 (1354)
.+|...... ++..+..|.+. |.+| ++.++|+++++.+.|..|+|||+|+-..+.... . ......+++|..
T Consensus 276 SlWSP~ske-PLvKiLcH~g~-V~si-Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~-t----p~~a~~ls~Sqk-- 345 (545)
T KOG1272|consen 276 SLWSPNSKE-PLVKILCHRGP-VSSI-AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR-T----PHPASNLSLSQK-- 345 (545)
T ss_pred EecCCCCcc-hHHHHHhcCCC-cceE-EECCCCcEEeecccccceeEeeeccccccceee-c----CCCccccccccc--
Confidence 999999988 88888888776 9999 778899999999999999999999876443322 2 145677777754
Q ss_pred CCEEEEEECCCcEEEEeCC-CCC-ccEEEEecC--CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 000681 1246 PAKIVSASQAGDIQFLDIR-NHK-DAYLTIDAH--RGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1246 g~~Lasgs~DG~I~IWDl~-~~~-~~v~~l~~h--~~~VtsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
-+++.+....|.||.=. .+. ..-.-+-.| .+.|..+.|.|...+|..|-..|.-.|
T Consensus 346 --glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 346 --GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred --cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 34444455679999522 110 111111122 458999999999888888766664333
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-08 Score=120.38 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=147.1
Q ss_pred cEEEEeCCCC---------CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCC
Q 000681 1032 PIACWDTRFE---------KGTKTALLQPFSPIVVAAD---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1099 (1354)
Q Consensus 1032 ~I~iWd~~~~---------~~I~sL~fspdg~~Latgs---~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d 1099 (1354)
.|.+||.... ..+.+.+|+|||+.|+..+ .+..|.+|++.+++.... .... +.+....| ++|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~---~~~~~~~~--SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP---RHNGAPAF--SPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC---CCcCCeEE--CCC
Confidence 5777776543 4578999999999888654 245799999988754322 2222 23345778 789
Q ss_pred CCEEEEE-eCCC--eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC-C--eEEEEECCCC
Q 000681 1100 VSLLLVA-SCNG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-S--SIMLWDLEKE 1173 (1354)
Q Consensus 1100 ~~~L~tg-s~DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D-g--~I~VWDl~t~ 1173 (1354)
|+.|+.. +.+| .|.+||+.+ +.... +..+...+.. ..|+|+++.|+.++++ + .|.++|+.++
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~t--g~~~~------lt~~~~~~~~----~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLAS--GQIRQ------VTDGRSNNTE----PTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCC--CCEEE------ccCCCCCcCc----eEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 9988765 4455 488888855 32222 2333333444 8999999988877654 4 4555577666
Q ss_pred ceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE
Q 000681 1174 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1250 (1354)
Q Consensus 1174 ~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D---GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~La 1250 (1354)
. ...+...... .... .++++|+.++..+.+ ..|.+||+.+++ ... +... ....+..|+|+ |..|+
T Consensus 322 ~--~~~lt~~~~~-~~~~-~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~-Lt~~----~~~~~p~~SpD--G~~i~ 389 (429)
T PRK03629 322 A--PQRITWEGSQ-NQDA-DVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQV-LTDT----FLDETPSIAPN--GTMVI 389 (429)
T ss_pred C--eEEeecCCCC-ccCE-EECCCCCEEEEEEccCCCceEEEEECCCCC-eEE-eCCC----CCCCCceECCC--CCEEE
Confidence 5 2333322222 4455 678999998876654 358889998776 222 2111 12346789999 99999
Q ss_pred EEECCCc---EEEEeCCCCCccEEEEecCCCCeEEEEEcCC
Q 000681 1251 SASQAGD---IQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1251 sgs~DG~---I~IWDl~~~~~~v~~l~~h~~~VtsLafspd 1288 (1354)
.++.++. +.++++... ....+..|.+.+...+|+|-
T Consensus 390 ~~s~~~~~~~l~~~~~~G~--~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEcCCCceEEEEEECCCC--CeEECccCCCCcCCcccCCC
Confidence 9887764 677787543 56677788888999999873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=125.86 Aligned_cols=234 Identities=12% Similarity=0.078 Sum_probs=153.3
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCCC
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1139 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1139 (1354)
..|.+||.+ +...+.+..+. ..+.+..| ++|++.|+.++.+ ..|.+||+.. +....+ ......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~---~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~--g~~~~l------~~~~g~ 249 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA---EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLAT--GQRELV------ASFRGI 249 (433)
T ss_pred EEEEEECCC-CCCceEeecCC---CccccccC--CCCCCEEEEEecCCCCcEEEEEECCC--CCEEEe------ccCCCC
Confidence 358888886 44444555555 57888888 7899998887643 4699999865 333332 222222
Q ss_pred cccceeEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CCe--EEEE
Q 000681 1140 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLY 1213 (1354)
Q Consensus 1140 V~si~~~v~~sp~~~~Lla~-g~Dg--~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DGs--VrIw 1213 (1354)
..+ ..|+|++..++.+ +.+| .|++||+.++. . ..+..+... .+.. .++++|+.++.++. +|. |.++
T Consensus 250 ~~~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~-~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGA----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-L-TRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccC----ceECCCCCEEEEEEeCCCCceEEEEECCCCC-e-EECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEE
Confidence 233 7899999988654 4444 69999998877 3 344433222 4556 67889998887764 454 6666
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG---~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|+.+++ ..... .. .......+|+|+ |+.|+..+.++ .|.+||+.++ .. ..+. +........|+|+|+
T Consensus 322 dl~~g~-~~~lt--~~--g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g-~~-~~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 322 AASGGS-AERLT--FQ--GNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTG-SV-RTLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred ECCCCC-eEEee--cC--CCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCC-Ce-EECC-CCCCCCCceECCCCC
Confidence 776655 22221 11 133457899999 88888765443 5999999876 23 3333 333455679999999
Q ss_pred EEEEEeCC---CcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEec
Q 000681 1291 IIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1291 ~Lasgs~D---g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafsp 1336 (1354)
+|+..+.+ +.|.+++.+|.....+.. +. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGRVRQRLVS-AD-------GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCCceEEccc-CC-------CCCCCCccCC
Confidence 87776553 468888888877776655 33 4566777876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-08 Score=121.03 Aligned_cols=234 Identities=10% Similarity=0.055 Sum_probs=153.8
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEEccCCCCcceEEeeeecccCCCCC
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1139 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1139 (1354)
..|.+||.+ +...+.+..+. ..+.+..| ++||+.|+..+. +..|.+||+.+ +..+.+ ..+...
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~---~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l------~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS---SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLET--GQRELV------GNFPGM 247 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC---CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCC--CcEEEe------ecCCCc
Confidence 468888875 45555666666 68999999 789998887763 46899999966 333322 333344
Q ss_pred cccceeEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC--eEEEE
Q 000681 1140 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLY 1213 (1354)
Q Consensus 1140 V~si~~~v~~sp~~~~Lla~-g~Dg--~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG--sVrIw 1213 (1354)
+.. ..|+|++..|+.+ +.+| .|++||+.++. . ..+..+.. ..+.. .++++|+.++..+. +| .|+++
T Consensus 248 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~-~~Lt~~~~-~~~~~-~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFA----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-T-TRLTDSPA-IDTSP-SYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccC----cEECCCCCEEEEEEecCCCceEEEEECCCCc-e-EEccCCCC-ccCce-eEcCCCCEEEEEECCCCCCeEEEE
Confidence 444 7899999988655 4444 48888998876 3 44444332 24555 67899998887764 33 58888
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1214 Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
|+..++ ..... . +...+....|+|+ |+.|+..+.+ ..|.+||+.++ ....+. ....+....|+|||+
T Consensus 320 d~~g~~-~~~lt-~---~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 320 NADGSN-PRRIS-F---GGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred ECCCCC-eEEee-c---CCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCCCCCeECCCCC
Confidence 887665 22222 1 1245667889999 8888876643 35888898654 233333 233567889999999
Q ss_pred EEEEEeCC------CcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1291 IIASGSAK------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1291 ~Lasgs~D------g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
.|+..+.+ ..+.++|++|.....+.. . +.+...+|+|.
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~--~-------~~~~~p~Wsp~ 433 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT--P-------GDASDPAWSPL 433 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC--C-------CCccCcccCCC
Confidence 87765442 257788888776655432 1 34566677763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=122.77 Aligned_cols=283 Identities=12% Similarity=0.185 Sum_probs=201.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---------------ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED---------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1104 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg---------------~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~ 1104 (1354)
++....|+.|+....++++|+.||.++|-.+.+. ..-+++.+|+ ..|.-+.| +...+.|-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~---~sV~vvTW--Ne~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN---ASVMVVTW--NENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc---ceEEEEEe--cccccccc
Confidence 3467889999999999999999999999977643 1123567888 89999999 56778888
Q ss_pred EEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeecCC
Q 000681 1105 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIPSS 1183 (1354)
Q Consensus 1105 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v-~~i~~~ 1183 (1354)
|...+|.|.||-++.+.--.+++ -....+.|. +++|+.+|..+...-.||.|.|=.++..+ .. +.+++.
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMi-----NnRnKSvV~----SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~ 157 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMI-----NNRNKSVVV----SMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQ 157 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHh-----hCcCccEEE----EEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchh
Confidence 88999999999998743333333 122233334 49999999999999999999887776554 11 223322
Q ss_pred CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC-------eeeEeecCCCCCCCCeEEEEEecC------CCCCEEE
Q 000681 1184 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-------MLVCSTRPHTQQVERVVGISFQPG------LDPAKIV 1250 (1354)
Q Consensus 1184 ~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~-------~~~~~~~~~~~h~~~I~sv~fsp~------~~g~~La 1250 (1354)
. ...+ .++++.+.++.+-.+|.+.+||....- ..+............|..+.|... .+...|+
T Consensus 158 ~---l~hv-~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 158 L---LAHV-LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred e---ccce-eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 1 3445 678888888899999999999976421 112111112222244667777422 1377899
Q ss_pred EEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCceEEEEeccCCcc
Q 000681 1251 SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---------QLIKVFSLEGEQLGTIRYHHPSF 1321 (1354)
Q Consensus 1251 sgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~D---------g~I~Iwd~~g~~l~~i~~~h~~f 1321 (1354)
.+-.+|.+.|..-.+..+++..-. .-.+....|+++|.+||.++.+ +.|.+|..-|+.+.+++. .
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv-p--- 307 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV-P--- 307 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec-C---
Confidence 999999999887666545543322 3578899999999999998764 368888877888888876 3
Q ss_pred ccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1322 MAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
...|++++|-..|-.+|.+ .|+.|.+
T Consensus 308 ----g~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 308 ----GSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ----CceeeeeEEcCCceEEEEE-ecceEEE
Confidence 3789999998888777766 4666654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=123.50 Aligned_cols=235 Identities=11% Similarity=0.114 Sum_probs=148.0
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCCC
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1139 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1139 (1354)
..|.++|.+ |.....+..+. ..+.+.+| ++||+.|+..+.+ ..|.+||+.+ +....+ ......
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP---EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVV------ANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCC---CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCC--CCEEEe------ecCCCC
Confidence 456777764 44445555555 67888899 7899998877643 4599999966 333322 222222
Q ss_pred cccceeEEEEecCCCeEEEE-ECCCeEEEE--ECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CCeEEEEEC
Q 000681 1140 VRCSNVVVDWQQQSGYLYAS-GEVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1215 (1354)
Q Consensus 1140 V~si~~~v~~sp~~~~Lla~-g~Dg~I~VW--Dl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DGsVrIwDl 1215 (1354)
+.. ..|+|++..|+.+ +.+|...|| |+.++. ...+..+.. .+++. .++++|+.++..+. +|...+|.+
T Consensus 242 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSA----PAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSG-IDTEP-FFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccc----eEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCC-CCcCe-EEcCCCCEEEEEecCCCCcEEEEE
Confidence 333 8999999988754 567765555 454444 344443332 24555 67899998876654 466666655
Q ss_pred C--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1216 R--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1216 r--~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG---~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
. ++. ..... ..+ .......|+|+ |++|+..+.++ .|.+||+.++. ...+..+ .......|+|+|+
T Consensus 314 ~~~~g~-~~~lt--~~g--~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 314 PASGGA-AQRVT--FTG--SYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQ--VTALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred ECCCCc-eEEEe--cCC--CCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCC--eEEccCC-CCccCceECCCCC
Confidence 4 443 22221 111 23446789999 89988777654 59999998772 3333322 3346789999999
Q ss_pred EEEEEeCCC---cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1291 IIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1291 ~Lasgs~Dg---~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
.|+.++.++ .+.+.+.+|.....+.. +. +.+...+|+|.
T Consensus 384 ~l~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp~ 425 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSSDGRIKQRLSV-QG-------GDVREPSWGPF 425 (427)
T ss_pred EEEEEEecCCCEEEEEEECCCCceEEeec-CC-------CCCCCCccCCC
Confidence 887776543 35555677877666654 33 56677788774
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-08 Score=113.97 Aligned_cols=296 Identities=14% Similarity=0.175 Sum_probs=182.3
Q ss_pred ecCCCCceEEEeeCCCcEEEEeCCCC--------CCeEEEEEcCCCCEEEEE-------E---CCCcEEEEECCCCceEE
Q 000681 1016 QRSCNSFDLAVSKLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAA-------D---ENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1016 q~~~~~~~L~~s~~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latg-------s---~Dg~I~IWd~~tg~~l~ 1077 (1354)
.+++.+..++.+ .+..+.+++..++ ..+.++.|+|-|.+|.+= . ..-.+.+|+++++....
T Consensus 41 ~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s 119 (566)
T KOG2315|consen 41 AYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS 119 (566)
T ss_pred EEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh
Confidence 344444444443 4446677776654 467889999999998772 1 12457799999976666
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC-eE
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YL 1156 (1354)
Q Consensus 1078 ~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~-~L 1156 (1354)
.+.... ..-.+..| +.|.. |++--..+.+.+|++...++... .-|...+.. +.++|... ..
T Consensus 120 ~~q~k~---Q~~W~~qf--s~dEs-l~arlv~nev~f~~~~~f~~~~~--------kl~~~~i~~----f~lSpgp~~~~ 181 (566)
T KOG2315|consen 120 QIQKKM---QNGWVPQF--SIDES-LAARLVSNEVQFYDLGSFKTIQH--------KLSVSGITM----LSLSPGPEPPF 181 (566)
T ss_pred heehhh---hcCccccc--ccchh-hhhhhhcceEEEEecCCccceee--------eeeccceee----EEecCCCCCce
Confidence 665544 22257777 34443 33333456799999855222111 113444544 66666522 22
Q ss_pred EEE------ECCCeEEEEECCCCceeeeeec--C--CCCCCeEEEEEEcCCCCEEEEEE--C---------CCeEEEEEC
Q 000681 1157 YAS------GEVSSIMLWDLEKEQQMVNPIP--S--SSDCSISALTASQVHGGQLAAGF--V---------DGSVRLYDV 1215 (1354)
Q Consensus 1157 la~------g~Dg~I~VWDl~t~~~~v~~i~--~--~~~~~Vtsl~~~s~~g~~L~sgs--~---------DGsVrIwDl 1215 (1354)
++. |.-+.|+||-...+. .-..+. . ..+. |.-. |......+|+..+ - ..+++++++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadk-vqm~-WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADK-VQMK-WNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred EEEEccCCCCCCcEEEEecccccc-ccchhhhccccccce-eEEE-eccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 322 344679999876332 111111 0 0111 2222 3222223333332 2 336888888
Q ss_pred CCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE--EECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEE
Q 000681 1216 RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS--ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293 (1354)
Q Consensus 1216 r~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las--gs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~La 1293 (1354)
......+. . ...++|.++.|+|+ +..+++ |-.--.+.|||++.. ++..+. .++=+++-|+|+|++|+
T Consensus 259 ~g~s~~V~-L----~k~GPVhdv~W~~s--~~EF~VvyGfMPAkvtifnlr~~--~v~df~--egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 259 QGESVSVP-L----LKEGPVHDVTWSPS--GREFAVVYGFMPAKVTIFNLRGK--PVFDFP--EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred cCceEEEe-c----CCCCCceEEEECCC--CCEEEEEEecccceEEEEcCCCC--EeEeCC--CCCccceEECCCCCEEE
Confidence 84442232 2 12489999999999 766654 445678999999865 665554 67788999999999888
Q ss_pred EEeC---CCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC------CCeEEEcC
Q 000681 1294 SGSA---KQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1354 (1354)
Q Consensus 1294 sgs~---Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~------Dg~V~IWd 1354 (1354)
.+|- -|.|.|||+ +-+.+..+.. ..-+-+.|+|||.+++|++. |+.++||+
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~~~~a----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIAKFKA----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeecCCCCCceEEEeccchhhcccccc----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 7765 478999994 5566676665 33566899999999999876 78888884
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-09 Score=115.73 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=135.0
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE---
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC--- 1223 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~--- 1223 (1354)
++|+|.-..+++++.|.+|++||-.. + +...++......|+|+++-+-.+..|+.|+..| |.+|.....-...+
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t-~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR 180 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-C-CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc
Confidence 89999877888899999999999877 4 566676666666999966655677888888766 88997653221111
Q ss_pred --------eecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEE
Q 000681 1224 --------STRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1224 --------~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Las 1294 (1354)
.+ .+.|| ..|+++.|+++ |..+++++. |..|.|||..++ ..+....-.-+.++-+.|||||.+|.+
T Consensus 181 ~~s~~~~qvl-~~pgh-~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 181 MMSTHHLQVL-QDPGH-NPVTSMQWNED--GTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccchhhe-eCCCC-ceeeEEEEcCC--CCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 23345 68999999999 999999885 577999999987 344333334567899999999999999
Q ss_pred EeCCCcEEEEeCCCc-eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1295 GSAKQLIKVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1295 gs~Dg~I~Iwd~~g~-~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
++-|+..++|+.+.. ....... ..+.|....|+|+|++|..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l--------gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL--------GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ecccceeeeehhcccceecceec--------cCCceeeeeecCCCCEEEEEE
Confidence 999999999974322 1111111 126899999999998766544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=113.81 Aligned_cols=245 Identities=15% Similarity=0.226 Sum_probs=173.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IW-d~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
+.+++...-|-++-+++.+.|.+++|| +.+.++.-..+.-.. | .+++++.+ ..+...|++|-.+|++.-+.+...
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P-~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-P-SPCSAMEY--VSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-C-CCceEeee--eccceEEEEEEecceEEEEEhhhh
Confidence 345666667777888999999999999 444555444443222 2 57889999 578899999999999998887542
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
-++... .+....|...+.. +-|+.....++++|.|+.+.---.+.+. .+..+..... -+++.+. -.+
T Consensus 101 fnkm~~---~r~~~~h~~~v~~----~if~~~~e~V~s~~~dk~~~~hc~e~~~-~lg~Y~~~~~--~t~~~~d---~~~ 167 (404)
T KOG1409|consen 101 FNKMTF---LKDYLAHQARVSA----IVFSLTHEWVLSTGKDKQFAWHCTESGN-RLGGYNFETP--ASALQFD---ALY 167 (404)
T ss_pred hhhcch---hhhhhhhhcceee----EEecCCceeEEEeccccceEEEeeccCC-cccceEeecc--CCCCcee---eEE
Confidence 222222 2556778888877 6677778889999988876544445544 3322221100 1111111 014
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCe
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1280 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~V 1280 (1354)
...|...|.|..-.+.... ...+....+|.+.++++.|.+. ...+.+|..|..|.+||+-..+.....+.+|.+.|
T Consensus 168 ~fvGd~~gqvt~lr~~~~~--~~~i~~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNG--CQLITTFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred EEecccccceEEEEEeecC--CceEEEEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 5566667777666554332 1122245578899999999998 89999999999999999987766777888999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1281 SALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1281 tsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
..+..-+..+.+.+++.||.|.+|+.+
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999999999999999999999999965
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=111.20 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=196.8
Q ss_pred eecCCCCceEEEeeCCCcEEEEeCCCC--------CCeEEEEEcCCCCEEEEEE-----------CCCcEEEEECCCCce
Q 000681 1015 CQRSCNSFDLAVSKLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAAD-----------ENERIKIWNYEEDTL 1075 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latgs-----------~Dg~I~IWd~~tg~~ 1075 (1354)
.++++.|..|++--..| |.+|.-+.- -.|.-+.|||.++||+|-+ +...++|||+.+|..
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l 294 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL 294 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence 57888888888766554 788876642 6789999999999999964 235799999999999
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCe
Q 000681 1076 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1076 l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~ 1155 (1354)
.+.|..-..+ ..+.. -|-|+.|+.+++.-..+ .|.||+... ..+. ..-.-...+|.. ..|+|.+..
T Consensus 295 krsF~~~~~~-~~~WP-~frWS~DdKy~Arm~~~-sisIyEtps----f~ll---d~Kslki~gIr~----FswsP~~~l 360 (698)
T KOG2314|consen 295 KRSFPVIKSP-YLKWP-IFRWSHDDKYFARMTGN-SISIYETPS----FMLL---DKKSLKISGIRD----FSWSPTSNL 360 (698)
T ss_pred hcceeccCCC-ccccc-eEEeccCCceeEEeccc-eEEEEecCc----eeee---cccccCCccccC----cccCCCcce
Confidence 9998874311 12222 23348899999887764 688998633 2222 001112344555 889998776
Q ss_pred EEEEE--CC---CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCCe
Q 000681 1156 LYASG--EV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDM 1220 (1354)
Q Consensus 1156 Lla~g--~D---g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs----------~DGsVrIwDlr~~~~ 1220 (1354)
|+--. .+ -.+.+-.+.+.+ .+++-..++-+ =..+ .++.+|.+|+.-- .-..+.|+.++....
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnVs-DckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNVS-DCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred EEEEcccccCCcceEEEEecCccc-eeeeccceeee-ccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 66543 11 246666666666 55544433222 1234 5677788776422 122477888887775
Q ss_pred eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCC-C--ccEEEEecCCCCeEEEEEcCCCCEEEE
Q 000681 1221 LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1221 ~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~-~--~~v~~l~~h~~~VtsLafspdg~~Las 1294 (1354)
.+... .+. ..|...+|-|. |+.+++-+.+ .++.+|.+.+. . ..+..+. ....+.+.|+|.|++++.
T Consensus 438 pve~v-elk---e~vi~FaWEP~--gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 438 PVEVV-ELK---ESVIAFAWEPH--GDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVV 509 (698)
T ss_pred Cceee-ecc---hheeeeeeccC--CCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEE
Confidence 55555 333 78999999999 7777765543 56889988732 1 2333443 345788999999998876
Q ss_pred E---eCCCcEEEEeCCCceEEEEec-cCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000681 1295 G---SAKQLIKVFSLEGEQLGTIRY-HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1295 g---s~Dg~I~Iwd~~g~~l~~i~~-~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
+ |..|.+.++|++-..+..... .| ...+.+.|.|.|++++++++-.
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~~~~~eh--------~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKDTASPEH--------FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred EEecccccceEEEecchhhhhhccCccc--------cccccceECCCCCEEEEeeehh
Confidence 6 557899999977422222211 03 3467899999999999998743
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-08 Score=118.80 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=136.1
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---CCCeEEEEECCCCceeeeeecCCCCC
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPSSSDC 1186 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~Dg~I~VWDl~t~~~~v~~i~~~~~~ 1186 (1354)
..|.+||... ...+. +..+...+.+ ..|+|++..|+..+ .+..|++||+.++. . ..+.....
T Consensus 182 ~~l~~~d~dg--~~~~~------lt~~~~~v~~----p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g- 246 (435)
T PRK05137 182 KRLAIMDQDG--ANVRY------LTDGSSLVLT----PRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPG- 246 (435)
T ss_pred eEEEEECCCC--CCcEE------EecCCCCeEe----eEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCC-
Confidence 3677777633 22222 3455556666 89999999888775 34689999998877 3 33333322
Q ss_pred CeEEEEEEcCCCCEEE-EEECCCe--EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000681 1187 SISALTASQVHGGQLA-AGFVDGS--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1260 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~-sgs~DGs--VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG--~I~I 1260 (1354)
.+.+. .++++|+.++ +.+.+|. |.+||+.++. ... + ..+........|+|+ |+.|+..+. +| .|++
T Consensus 247 ~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~-L---t~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTR-L---TDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCc-EECCCCCEEEEEEecCCCceEEEEECCCCc-eEE-c---cCCCCccCceeEcCC--CCEEEEEECCCCCCeEEE
Confidence 25566 6789998775 4555555 7777888776 322 2 223355677899999 888877764 33 5888
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~D---g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
||+.++ ....+..+.+.+....|+|+|+.|+..+.+ ..|.+||.++.....+.. . ..+....|+||
T Consensus 319 ~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~--~-------~~~~~p~~spD 387 (435)
T PRK05137 319 MNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS--G-------FLVEGPTWAPN 387 (435)
T ss_pred EECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC--C-------CCCCCCeECCC
Confidence 888765 344454445567778999999998876543 368888877665544432 1 23667899999
Q ss_pred CCEEEEEEC
Q 000681 1338 QVLLAAGSA 1346 (1354)
Q Consensus 1338 g~~Lasgs~ 1346 (1354)
|++|+..+.
T Consensus 388 G~~i~~~~~ 396 (435)
T PRK05137 388 GRVIMFFRQ 396 (435)
T ss_pred CCEEEEEEc
Confidence 998877655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=110.33 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=100.2
Q ss_pred EEcCCCCEEEEEEC----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE--EECCCcEEE
Q 000681 1193 ASQVHGGQLAAGFV----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS--ASQAGDIQF 1260 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~----------DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las--gs~DG~I~I 1260 (1354)
.+++.|+.|++-.. -|...+|.++........+.. ...+.|.+++|+|+ |+.|++ |..++.|.+
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l--~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL--KKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec--cCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 45666665554332 234566666544333333322 12357999999999 777654 446789999
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEec
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1336 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~---Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafsp 1336 (1354)
||++ . ..+..+. ...+..+.|+|+|++|++|+. .|.|.+||.+ .+.+.... | ..++.++|+|
T Consensus 88 yd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~--------~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H--------SDATDVEWSP 153 (194)
T ss_pred EcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c--------CcEEEEEEcC
Confidence 9997 3 4666664 567889999999999999874 3679999966 34444332 2 3478999999
Q ss_pred CCCEEEEEEC------CCeEEEcC
Q 000681 1337 YQVLLAAGSA------DACVSIHS 1354 (1354)
Q Consensus 1337 dg~~Lasgs~------Dg~V~IWd 1354 (1354)
+|++|++++. |+.++||+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEE
Confidence 9999999875 78888885
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-08 Score=115.09 Aligned_cols=264 Identities=16% Similarity=0.160 Sum_probs=168.8
Q ss_pred eecCCCCceEEEeeCC-CcEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCC
Q 000681 1015 CQRSCNSFDLAVSKLN-NPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD 1083 (1354)
Q Consensus 1015 ~q~~~~~~~L~~s~~d-~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~ 1083 (1354)
..-++|+..++..+.. -+|++||+.+- ..|.-.-++-|-..++.--.|.+|.+-.-. |. -......
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~-hy~~RIP- 133 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GR-HYRTRIP- 133 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ce-eeeeecC-
Confidence 3456777665555554 59999998763 223222233333333333344444443211 11 1111111
Q ss_pred CCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCC
Q 000681 1084 FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1163 (1354)
Q Consensus 1084 ~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg 1163 (1354)
..-.+|++. .+...++++|+.. .|.-+++.. |. ...+ +....+.+++ +..++..+.|++|+.+|
T Consensus 134 ---~~GRDm~y~-~~scDly~~gsg~-evYRlNLEq--Gr--fL~P---~~~~~~~lN~----v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 134 ---KFGRDMKYH-KPSCDLYLVGSGS-EVYRLNLEQ--GR--FLNP---FETDSGELNV----VSINEEHGLLACGTEDG 197 (703)
T ss_pred ---cCCcccccc-CCCccEEEeecCc-ceEEEEccc--cc--cccc---ccccccccee----eeecCccceEEecccCc
Confidence 123466663 4566666666554 444445533 33 2322 3333456666 77788889999999999
Q ss_pred eEEEEECCCCceeeeeecCCC----------CCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSS----------DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1233 (1354)
Q Consensus 1164 ~I~VWDl~t~~~~v~~i~~~~----------~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~ 1233 (1354)
.|-.||.+... .+.++.... ...|+++ .++.+|-.+++|+.+|.|.|||+|+.+++...- | +...
T Consensus 198 ~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal-~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h-~~e~ 272 (703)
T KOG2321|consen 198 VVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTAL-KFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--H-GYEL 272 (703)
T ss_pred eEEEecchhhh-hheeeecccccCCCccccccCcceEE-EecCCceeEEeeccCCcEEEEEcccCCceeecc--c-CCcc
Confidence 99999999877 555554321 1248999 677779999999999999999999988554432 2 3457
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+|..+.|.+..+++.+++. ....++|||-.++ .+...+... ..++.+++-|++.++.++-.++.+..|=
T Consensus 273 pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred ceeeecccccCCCceEEec-chHHhhhcccccC-Cceeecccc-CCcCceeeecCCceEEEecCCCcceeEE
Confidence 8999999887334455544 4467999999998 577777654 4499999999999999998887766654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-08 Score=117.55 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=145.9
Q ss_pred cEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCC
Q 000681 1032 PIACWDTRFE---------KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1099 (1354)
Q Consensus 1032 ~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~D---g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d 1099 (1354)
.|.+||.... ..+.+..|+|||+.|+..+.+ ..|.+||+.+++... +.... +...+..| ++|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~---g~~~~~~~--SpD 258 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFR---GINGAPSF--SPD 258 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCC---CCccCceE--CCC
Confidence 5777887543 357788999999999887633 469999998776533 33333 34456778 789
Q ss_pred CCEEE-EEeCCC--eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-CCe--EEEEECCCC
Q 000681 1100 VSLLL-VASCNG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSS--IMLWDLEKE 1173 (1354)
Q Consensus 1100 ~~~L~-tgs~DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-Dg~--I~VWDl~t~ 1173 (1354)
|+.|+ +.+.+| .|.+||+.+ +... .+..+...... .+|+|++..++.+++ +|. |+++|+.++
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~--g~~~------~lt~~~~~~~~----~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGS--RQLT------RLTNHFGIDTE----PTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCC--CCeE------ECccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 98775 455555 588888865 3222 13334333334 799999998887763 444 777787776
Q ss_pred ceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE
Q 000681 1174 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1250 (1354)
Q Consensus 1174 ~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG---sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~La 1250 (1354)
+ . ..+..+... .... .++++|+.++..+.++ .|.+||+.+++ .. .+ .. ........|+|+ |+.++
T Consensus 327 ~-~-~~lt~~g~~-~~~~-~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~-~L-t~---~~~~~~p~~spd--G~~i~ 394 (433)
T PRK04922 327 S-A-ERLTFQGNY-NARA-SVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VR-TL-TP---GSLDESPSFAPN--GSMVL 394 (433)
T ss_pred C-e-EEeecCCCC-ccCE-EECCCCCEEEEEECCCCceeEEEEECCCCC-eE-EC-CC---CCCCCCceECCC--CCEEE
Confidence 5 3 222222122 3455 6789999988766543 69999998776 22 22 11 123456789999 88877
Q ss_pred EEECC---CcEEEEeCCCCCccEEEEecCCCCeEEEEEcC
Q 000681 1251 SASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR 1287 (1354)
Q Consensus 1251 sgs~D---G~I~IWDl~~~~~~v~~l~~h~~~VtsLafsp 1287 (1354)
..+.+ +.|.++|.... ....+..+.+.+...+|+|
T Consensus 395 ~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 76653 35778888643 5556666667778888876
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=111.01 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=169.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC-CcceEEeeeecccCCCC------------CcccceeEEEEecCC
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKP------------GVRCSNVVVDWQQQS 1153 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~------------~V~si~~~v~~sp~~ 1153 (1354)
.-|.++.| ...|.+|+||..+|.|.++.-.... +.....+ .++.|.. .|.. +.|.+++
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t---~fqshepEFDYLkSleieEKink----Irw~~~~ 96 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQT---EFQSHEPEFDYLKSLEIEEKINK----IRWLDDG 96 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeeee---eeeccCcccchhhhhhhhhhhhh----ceecCCC
Confidence 46889999 6899999999999999999764422 2222222 2333332 2333 7787765
Q ss_pred C--eEEEEECCCeEEEEECCCCc----------------------------------eeeeeecCCCCCCeEEEEEEcCC
Q 000681 1154 G--YLYASGEVSSIMLWDLEKEQ----------------------------------QMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1154 ~--~Lla~g~Dg~I~VWDl~t~~----------------------------------~~v~~i~~~~~~~Vtsl~~~s~~ 1197 (1354)
+ .++..+.|++|++|.+.... .+.+.+...+..-|.+| ....+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI-S~NsD 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI-SVNSD 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee-eecCc
Confidence 4 57778899999999876432 01112222233347777 55667
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecC--C--CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccE---
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRP--H--TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--- 1270 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~--~--~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v--- 1270 (1354)
+..++++ .|=.|.+|++.-......+... . ..-..-|++..|||. ..+.++-.+..|+|++.|+|...-+.
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchh
Confidence 7777665 4778999998754433333211 1 011245889999998 78899999999999999999532111
Q ss_pred EEEe------------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CCCceEEEEeccCCcccc--------ccCCC
Q 000681 1271 LTID------------AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMA--------QKIGS 1328 (1354)
Q Consensus 1271 ~~l~------------~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd--~~g~~l~~i~~~h~~fl~--------~~~~~ 1328 (1354)
+.+. .--..|+.+.|++.|+++++-+. -+|++|| ++.+++.++.. |..... ...-.
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhh
Confidence 1111 11236889999999999998754 5899999 56788888777 653211 11222
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1329 VNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1329 V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
-..++|+-++.+++||+-...+++|+
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEec
Confidence 35678999999999999999998875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-08 Score=117.40 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=122.1
Q ss_pred cCCCCCcccceeEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEE-EEECCCe
Q 000681 1134 QGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGS 1209 (1354)
Q Consensus 1134 ~~h~~~V~si~~~v~~sp~~~~Lla~g~---Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~-sgs~DGs 1209 (1354)
..+...+.+ ..|+|++..|+.++. ...|.+||+.+++ ... +...... +.+. .++++|+.++ +.+.+|.
T Consensus 192 ~~~~~~v~~----p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~-l~~~~g~-~~~~-~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 192 LSSPEPIIS----PAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRV-VANFKGS-NSAP-AWSPDGRTLAVALSRDGN 263 (427)
T ss_pred ccCCCCccc----ceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEE-eecCCCC-ccce-EECCCCCEEEEEEccCCC
Confidence 345555555 899999999887763 2469999999887 432 3222222 4555 6889998876 4677887
Q ss_pred EEEEEC--CCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCccEEEEecCCCCeEEEEEc
Q 000681 1210 VRLYDV--RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVH 1286 (1354)
Q Consensus 1210 VrIwDl--r~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafs 1286 (1354)
..+|.+ ..+. . ..+ ..+........|+|+ |+.|+..+. +|...+|.+.........+..+.......+|+
T Consensus 264 ~~Iy~~d~~~~~-~-~~l---t~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 264 SQIYTVNADGSG-L-RRL---TQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRIS 336 (427)
T ss_pred ceEEEEECCCCC-c-EEC---CCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEEC
Confidence 666654 3333 2 222 223345667889999 888776654 46666665542111233332233334568899
Q ss_pred CCCCEEEEEeCCC---cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000681 1287 RHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1287 pdg~~Lasgs~Dg---~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
|+|++|+..+.++ .|.+||+.+.....+.. . .......|+|+|++|+.++.++
T Consensus 337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 337 PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--------CCccCceECCCCCEEEEEEecC
Confidence 9999998776554 69999976655555533 1 1235679999999988877643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-06 Score=99.42 Aligned_cols=278 Identities=14% Similarity=0.199 Sum_probs=170.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC----ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe-CCCeE
Q 000681 1042 KGTKTALLQPFSPIVVAADE----NERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNI 1112 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~----Dg~I~IWd~~tg----~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs-~DG~I 1112 (1354)
..++-|+++|++++|.++.+ +|.|..|++... +.+...... +.....+++ ++++++|+++. .+|.|
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~---g~~p~~i~~--~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG---GSSPCHIAV--DPDGRFLYVANYGGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES---SSCEEEEEE--CTTSSEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC---CCCcEEEEE--ecCCCEEEEEEccCCeE
Confidence 56778999999999998876 568999988764 233333322 245567887 78999999887 58999
Q ss_pred EEEEccCCCCcceEEeeeecccCC----CCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCce---eeeeecCCC
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGH----KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQ---MVNPIPSSS 1184 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h----~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~---~v~~i~~~~ 1184 (1354)
.++++... +............+. ......-.-.+.++|+++++++.. ....|.+|++..... ....+....
T Consensus 112 ~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 112 SVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 99999763 322222111111110 000111112388999999999885 445799999876541 123444455
Q ss_pred CCCeEEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCCe-eeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEE-CCC
Q 000681 1185 DCSISALTASQVHGGQLAAGF-VDGSVRLYDVR--TPDM-LVCSTRPHT---QQVERVVGISFQPGLDPAKIVSAS-QAG 1256 (1354)
Q Consensus 1185 ~~~Vtsl~~~s~~g~~L~sgs-~DGsVrIwDlr--~~~~-~~~~~~~~~---~h~~~I~sv~fsp~~~g~~Lasgs-~DG 1256 (1354)
+..-..+ .++++++++++.. .+++|.+|++. .+.. ......... ........++++|+ |++|+++. .++
T Consensus 191 G~GPRh~-~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd--g~~lyvsnr~~~ 267 (345)
T PF10282_consen 191 GSGPRHL-AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD--GRFLYVSNRGSN 267 (345)
T ss_dssp TSSEEEE-EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT--SSEEEEEECTTT
T ss_pred CCCCcEE-EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC--CCEEEEEeccCC
Confidence 5557888 6788888776554 57889999998 3321 111121110 11236889999999 88877766 557
Q ss_pred cEEEEeCCCCC---ccEEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CceEEEEeccCCccccccCCCeE
Q 000681 1257 DIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVN 1330 (1354)
Q Consensus 1257 ~I~IWDl~~~~---~~v~~l~~h~~~VtsLafspdg~~Lasgs-~Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~ 1330 (1354)
.|.+|+++... ..+..+.......+.++++|+|++|+++. .++.|.+|+++ ...+..... .. ......
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~-~~-----~~~~p~ 341 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS-SV-----PIPSPV 341 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EE-----ESSSEE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc-cc-----cCCCCE
Confidence 89999994321 23334444345589999999999888776 56789999853 223333321 10 135677
Q ss_pred EEEE
Q 000681 1331 CLTF 1334 (1354)
Q Consensus 1331 sLaf 1334 (1354)
|+.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7776
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=123.70 Aligned_cols=256 Identities=15% Similarity=0.254 Sum_probs=173.0
Q ss_pred EEeeCCCcEEEEeCCCC------CCeEEEEEc-------CCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEE
Q 000681 1025 AVSKLNNPIACWDTRFE------KGTKTALLQ-------PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1025 ~~s~~d~~I~iWd~~~~------~~I~sL~fs-------pdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~Its 1091 (1354)
+.++....|.++|...+ .....+.+| -.+.+++++..-+.+.+=+.. .+....+.. .|..
T Consensus 20 llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~~~~s~------wi~g 92 (967)
T KOG0974|consen 20 LLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQIIERFSD------WIFG 92 (967)
T ss_pred eeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchh-hhhhhhccc------cccc
Confidence 34445557888998887 333445555 233345555543333332221 112222222 2222
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECC
Q 000681 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1171 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~ 1171 (1354)
-.+ ..+...++.++.+..+-+||...+ .+. ..+.............+..+.+.-++++|+--+.|.+|+..
T Consensus 93 ~~l--~~e~k~i~l~~~~ns~~i~d~~~~----~~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 93 AKL--FEENKKIALVTSRNSLLIRDSKNS----SVL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cch--hhhcceEEEEEcCceEEEEecccC----cee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 333 236678888888889999998541 111 11121111111112224455566678888888999999988
Q ss_pred CCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000681 1172 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1251 (1354)
Q Consensus 1172 t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las 1251 (1354)
... .-..+.+|.+. |.++ .++.+|.++++.+.|.++|+|++.+.+.... ..-+|...|..+.+.|+ .++|
T Consensus 164 ~dn-~p~~l~GHeG~-iF~i-~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---~~fgHsaRvw~~~~~~n----~i~t 233 (967)
T KOG0974|consen 164 EDN-KPIRLKGHEGS-IFSI-VTSLDGRYIASVSDDRSIRLWPIDSREVLGC---TGFGHSARVWACCFLPN----RIIT 233 (967)
T ss_pred ccC-CcceecccCCc-eEEE-EEccCCcEEEEEecCcceeeeecccccccCc---ccccccceeEEEEeccc----eeEE
Confidence 444 33356777776 9999 7788999999999999999999998874441 22378999999999986 9999
Q ss_pred EECCCcEEEEeCCCCCccEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1252 ASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1252 gs~DG~I~IWDl~~~~~~v~~l~~h~-~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
++.|.+.++|+.... .+..+..|. ..|..++.+++...++|++.|+.+++|++.+
T Consensus 234 ~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999987643 666888885 4799999999999999999999999999643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-07 Score=108.22 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=160.5
Q ss_pred CEE-EEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeec
Q 000681 1054 PIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1054 ~~L-atgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
+++ ++-..+|.|.|.|..+.+.+.++.... ..-..+.| ++|++++++++.||.|.++|+.+. +++..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~----~~v~~--- 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKF--SPDGRYLYVANRDGTVSVIDLATG----KVVAT--- 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE---TT-SSEEEEEETTSEEEEEETTSS----SEEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEe--cCCCCEEEEEcCCCeEEEEECCcc----cEEEE---
Confidence 344 445578999999999999999998765 33334566 789999999999999999999762 23322
Q ss_pred ccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC------CCCCeEEEEEEcCCCCEEEEEE
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTASQVHGGQLAAGF 1205 (1354)
Q Consensus 1133 l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~------~~~~Vtsl~~~s~~g~~L~sgs 1205 (1354)
+..- ....+ +++++++++++++. .++.+.++|.++.+ .++.++.. ..+.+.+| ..++....++..-
T Consensus 74 i~~G-~~~~~----i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aI-v~s~~~~~fVv~l 146 (369)
T PF02239_consen 74 IKVG-GNPRG----IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAI-VASPGRPEFVVNL 146 (369)
T ss_dssp EE-S-SEEEE----EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEE-EE-SSSSEEEEEE
T ss_pred EecC-CCcce----EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeE-EecCCCCEEEEEE
Confidence 2211 12233 88899999999885 78999999999998 88887653 23347788 5566677566555
Q ss_pred C-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEeCCCCCccEEEEe----cCCCC
Q 000681 1206 V-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTID----AHRGS 1279 (1354)
Q Consensus 1206 ~-DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasg-s~DG~I~IWDl~~~~~~v~~l~----~h~~~ 1279 (1354)
. .|.|.+.|....+......... ........|+|+ +++++.+ ..+..|-++|..++ ..+..+. .|.++
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~---g~~~~D~~~dpd--gry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKV---GRFPHDGGFDPD--GRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGP 220 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TT--SSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETT
T ss_pred ccCCeEEEEEeccccccceeeecc---cccccccccCcc--cceeeecccccceeEEEeeccc-eEEEEeeccccccccc
Confidence 5 5889898987765333222111 256778999999 8887665 45678999999887 4555443 23344
Q ss_pred eEEEEEcCCC-CEEEEE---------eCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEE---E
Q 000681 1280 LSALAVHRHA-PIIASG---------SAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG---S 1345 (1354)
Q Consensus 1280 VtsLafspdg-~~Lasg---------s~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasg---s 1345 (1354)
+..+ .||.. .+.+++ -....+.+|+ .+.+.+.++.. .. +. .-+.-||+++++.+. +
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G-------~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QG-------GG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SS-------SS---EE--TT-SEEEEE-TT-
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC-CC-------Cc-ceeecCCCCccEEeeccCC
Confidence 4433 23332 222222 1123455666 44677777776 22 34 677889999999998 3
Q ss_pred C-CCeEEEcC
Q 000681 1346 A-DACVSIHS 1354 (1354)
Q Consensus 1346 ~-Dg~V~IWd 1354 (1354)
. .+.|.|+|
T Consensus 291 ~~~~~v~viD 300 (369)
T PF02239_consen 291 PDADTVQVID 300 (369)
T ss_dssp SSHT-EEEEE
T ss_pred CCCceEEEEE
Confidence 3 46777764
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-07 Score=112.31 Aligned_cols=223 Identities=13% Similarity=0.127 Sum_probs=144.7
Q ss_pred CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCC
Q 000681 1062 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1138 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1138 (1354)
...|.++|.+. .....+..+. ..+....| ++||++|+.++.+ ..|++||+.+ +....+ ..+..
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~---~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSR---EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLAT--GQREKV------ASFPG 234 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCC---CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEe------ecCCC
Confidence 34577777753 3344455555 56778888 7899999887654 4799999866 333322 22333
Q ss_pred CcccceeEEEEecCCCeEEEE-ECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC--eEEE
Q 000681 1139 GVRCSNVVVDWQQQSGYLYAS-GEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRL 1212 (1354)
Q Consensus 1139 ~V~si~~~v~~sp~~~~Lla~-g~D--g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG--sVrI 1212 (1354)
.+.+ +.|+|++..|+.+ +.+ ..|++||+.++. ...+..+... .... .++++|+.++..+. +| .|.+
T Consensus 235 ~~~~----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGA----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccc----eEECCCCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 3344 7899999888765 333 459999998876 3334333222 3444 56789988876654 33 5888
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCC
Q 000681 1213 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1289 (1354)
Q Consensus 1213 wDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG---~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg 1289 (1354)
+|+.+++ ..... .+...+....|+|+ |++++.++.++ .|.+||+.++ ....+... .......|+|+|
T Consensus 307 ~d~~~~~-~~~l~----~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~-~~~~~p~~spdg 376 (417)
T TIGR02800 307 MDADGGE-VRRLT----FRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG--GERVLTDT-GLDESPSFAPNG 376 (417)
T ss_pred EECCCCC-EEEee----cCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC--CeEEccCC-CCCCCceECCCC
Confidence 8887665 22221 12355778899999 88888888776 7899998875 23333322 234556899999
Q ss_pred CEEEEEeCCC---cEEEEeCCCceEEEEec
Q 000681 1290 PIIASGSAKQ---LIKVFSLEGEQLGTIRY 1316 (1354)
Q Consensus 1290 ~~Lasgs~Dg---~I~Iwd~~g~~l~~i~~ 1316 (1354)
+.|+..+.++ .+.+.+.+|.....+..
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 9888776643 46677777877666644
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-07 Score=105.59 Aligned_cols=303 Identities=13% Similarity=0.158 Sum_probs=193.7
Q ss_pred heeecCCCCceEEEeeCCCcEEEEeCCCC--------CCeEEEEEcCCCCEEEEEEC---------------CCcEEEEE
Q 000681 1013 AKCQRSCNSFDLAVSKLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADE---------------NERIKIWN 1069 (1354)
Q Consensus 1013 ~~~q~~~~~~~L~~s~~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latgs~---------------Dg~I~IWd 1069 (1354)
.-.+.++.|..++..... .|.+|+.... ..|..+.|+|.++||.+=+. ++.+.|||
T Consensus 36 ~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd 114 (561)
T COG5354 36 AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD 114 (561)
T ss_pred hheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence 445678888777776554 5788988775 56889999999999998653 33599999
Q ss_pred CCCCceEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEE
Q 000681 1070 YEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD 1148 (1354)
Q Consensus 1070 ~~tg~~l~~~~~h~~~~~~It-sL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~ 1148 (1354)
..+|..+..|..-..+.. .. -+.| +.+..+++-. ....+.|+++ + +... ...+..+. ...+.. ..
T Consensus 115 ~~sg~iv~sf~~~~q~~~-~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t--~n~~-~~p~~~lr--~~gi~d----Fs 180 (561)
T COG5354 115 IASGMIVFSFNGISQPYL-GWPVLKF--SIDDKYVARV-VGSSLYIHEI-T--DNIE-EHPFKNLR--PVGILD----FS 180 (561)
T ss_pred ccCceeEeeccccCCccc-ccceeee--eecchhhhhh-ccCeEEEEec-C--Cccc-cCchhhcc--ccceee----EE
Confidence 999999999987763211 22 5566 5566666544 2346899997 2 1111 11111121 122333 66
Q ss_pred EecCCCe--EEE-----EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEE-----------ECCCeE
Q 000681 1149 WQQQSGY--LYA-----SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG-----------FVDGSV 1210 (1354)
Q Consensus 1149 ~sp~~~~--Lla-----~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sg-----------s~DGsV 1210 (1354)
|+|.++. |+. .+.++.+++|.+.... .+.+-.--.-. =..+ .+++.|+++++- .....+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk~~-~~qL-kW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFKVS-GVQL-KWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEeec-ccEE-EEecCCceEEEEEEEeeecccceeccceE
Confidence 7766332 222 2567889999988666 33322211111 1233 344555554421 234568
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE--EEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCC
Q 000681 1211 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV--SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1211 rIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~La--sgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspd 1288 (1354)
++++++.....+.. +-.++|...+|.|. ++.++ +|-.+..+.++|++.. ....+ ..+.=+.+.|+|+
T Consensus 258 yl~~~~e~~i~V~~-----~~~~pVhdf~W~p~--S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~ 326 (561)
T COG5354 258 YLLRITERSIPVEK-----DLKDPVHDFTWEPL--SSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPH 326 (561)
T ss_pred EEEeecccccceec-----cccccceeeeeccc--CCceeEEecccccceeecccccc--eEEec--CCcccccccccCc
Confidence 88998855422221 22489999999999 55544 4457889999999865 33333 3445567889999
Q ss_pred CCEEEEEeCC---CcEEEEeCCCceEEE--EeccCCccccccCCCeEEEEEecCCCEEEEEEC------CCeEEEcC
Q 000681 1289 APIIASGSAK---QLIKVFSLEGEQLGT--IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1354 (1354)
Q Consensus 1289 g~~Lasgs~D---g~I~Iwd~~g~~l~~--i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~------Dg~V~IWd 1354 (1354)
+++++.++-| |.|.+||..|+.... +.+ ...+-+.|+|+++++.+... |..|+||+
T Consensus 327 ~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~----------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 327 ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG----------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ccEEEEecCCccccceEEeccCCceEEEEEeec----------CCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 9998887655 689999977665443 433 23455789999998877654 77888885
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.9e-08 Score=113.59 Aligned_cols=213 Identities=14% Similarity=0.172 Sum_probs=152.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEee
Q 000681 1050 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA 1129 (1354)
Q Consensus 1050 spdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~ 1129 (1354)
.|-..++|..+.||.++||+...++....|.......+..++..| .+.......+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w---------------------~L~~~~s~~k~--- 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW---------------------GLSADYSPMKW--- 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE---------------------EEEeccchHHH---
Confidence 345679999999999999999998887777543322234445555 22110011000
Q ss_pred eecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec-CCCCCCeEEEEEEcCCCCEEEEEECCC
Q 000681 1130 FSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAAGFVDG 1208 (1354)
Q Consensus 1130 ~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~-~~~~~~Vtsl~~~s~~g~~L~sgs~DG 1208 (1354)
..+... ..-+-+...++-|...|.|.+|++..++ ....+. +.+...|+++ .+..+-..|.+++.|+
T Consensus 58 -~~~~~~----------~~~s~~t~~lvlgt~~g~v~~ys~~~g~-it~~~st~~h~~~v~~~-~~~~~~~ciyS~~ad~ 124 (541)
T KOG4547|consen 58 -LSLEKA----------KKASLDTSMLVLGTPQGSVLLYSVAGGE-ITAKLSTDKHYGNVNEI-LDAQRLGCIYSVGADL 124 (541)
T ss_pred -HhHHHH----------hhccCCceEEEeecCCccEEEEEecCCe-EEEEEecCCCCCcceee-ecccccCceEecCCce
Confidence 001100 0001134456667788999999999998 777776 5566668888 5566778999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCC
Q 000681 1209 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1209 sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspd 1288 (1354)
.+..|+..... ..+.++.. ...+.+++++|+ |..+++|+ ++|++||+.+. +.+.+|.+|.++|++++|-..
T Consensus 125 ~v~~~~~~~~~-~~~~~~~~---~~~~~sl~is~D--~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 125 KVVYILEKEKV-IIRIWKEQ---KPLVSSLCISPD--GKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eEEEEecccce-eeeeeccC---CCccceEEEcCC--CCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEe
Confidence 99999998877 66666544 378999999999 99999987 68999999998 799999999999999999877
Q ss_pred -----CCEEE-EEeCCCcEEEEeCCC
Q 000681 1289 -----APIIA-SGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1289 -----g~~La-sgs~Dg~I~Iwd~~g 1308 (1354)
|.++. +...+..+.+|-..+
T Consensus 196 ~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeeeccccccceeEEEEEc
Confidence 55554 445567788887543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-08 Score=104.39 Aligned_cols=248 Identities=13% Similarity=0.165 Sum_probs=158.9
Q ss_pred CeEEEEEcC---CCC-EEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEeCCCeEEEEEc
Q 000681 1043 GTKTALLQP---FSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWKD 1117 (1354)
Q Consensus 1043 ~I~sL~fsp---dg~-~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~It-sL~f~~s~d~~~L~tgs~DG~IrIWdl 1117 (1354)
.+..+.|.. +|. .++-+..+|.|.++..........+.+-....-.+. ++...+++.+..++++..+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 455566643 444 567777899999998775555555544331112233 444444788889999999999985543
Q ss_pred cCCCCcceEEeeeecccCCCCCcccceeEEEEecC-CCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeEEEEEEc
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~-~~~Lla~g~Dg~I~VWDl~t~~~~v~~-i~~~~~~~Vtsl~~~s 1195 (1354)
.. ..+...+..+.|.-..+. ..|+-. .+.+++||+|+.+..||++.....+.. .+.|+.. |.+|...+
T Consensus 151 t~-----~~le~vq~wk~He~E~Wt----a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G-V~SI~ss~ 220 (339)
T KOG0280|consen 151 TE-----MVLEKVQTWKVHEFEAWT----AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG-VVSIYSSP 220 (339)
T ss_pred ce-----eeeeecccccccceeeee----eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc-eEEEecCC
Confidence 22 222333567888887776 555433 367788899999999999943324544 4455555 99997777
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-c---cEE
Q 000681 1196 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-D---AYL 1271 (1354)
Q Consensus 1196 ~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~---~v~ 1271 (1354)
+.+.++++|+.|-.|++||.|+-.+++..- .. .+.|..+..+|. ....++.++.-.-.+|-+...+. + ...
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v---~GGVWRi~~~p~-~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~ 295 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKA-KV---GGGVWRIKHHPE-IFHRLLAACMHNGAKILDSSDKVLEFQIVLP 295 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccC-cc---ccceEEEEecch-hhhHHHHHHHhcCceEEEecccccchheeee
Confidence 889999999999999999999544343322 11 278999999997 22233333333345666665442 1 334
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEe
Q 000681 1272 TIDAHRGSLSALAVHRHAPIIASGS-AKQLIK-VFS 1305 (1354)
Q Consensus 1272 ~l~~h~~~VtsLafspdg~~Lasgs-~Dg~I~-Iwd 1305 (1354)
..+.|.+-...-.|.....+|||++ .|+.++ +|-
T Consensus 296 s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 296 SDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeccccccccceeeeeeccccceeeeee
Confidence 4556666666666754456788865 355543 553
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-06 Score=100.08 Aligned_cols=276 Identities=14% Similarity=0.183 Sum_probs=171.5
Q ss_pred EEEEECC----CcEEEEEC--CCCceE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----CCeEEEEEccCCCCc
Q 000681 1056 VVAADEN----ERIKIWNY--EEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVASC----NGNIRIWKDYDQKDK 1123 (1354)
Q Consensus 1056 Latgs~D----g~I~IWd~--~tg~~l--~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~----DG~IrIWdl~~~~~~ 1123 (1354)
+++|+.. +.|.+|++ ++++.. ..+... ...+.+++ ++++++|+++.. +|.|..|++....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES----SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC----CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence 4555555 68999877 444332 222222 35567788 689999999977 579999998764355
Q ss_pred ceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee---eec---------CCCCCCeEE
Q 000681 1124 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN---PIP---------SSSDCSISA 1190 (1354)
Q Consensus 1124 ~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~---~i~---------~~~~~~Vts 1190 (1354)
.+.+..... .+ .... .++.++++++++++. .+|.|.++++........ .+. ........+
T Consensus 76 L~~~~~~~~-~g--~~p~----~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPS-GG--SSPC----HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEE-SS--SCEE----EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeecc-CC--CCcE----EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 554432221 11 1111 278889999999996 689999999987420211 121 112233677
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEECCCCCe-eeE--eecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCC
Q 000681 1191 LTASQVHGGQLAAGF-VDGSVRLYDVRTPDM-LVC--STRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRN 1265 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs-~DGsVrIwDlr~~~~-~~~--~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~ 1265 (1354)
+ .++|+|+++++.. ....|.+|++..... +.. .... .....-..+.|+|+ ++++++.. .+++|.++++..
T Consensus 149 v-~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pd--g~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 149 V-VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPD--GKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp E-EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TT--SSEEEEEETTTTEEEEEEEET
T ss_pred E-EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCC--cCEEEEecCCCCcEEEEeecc
Confidence 7 6788998777654 455899999986552 211 1111 22367899999999 77776655 578899999982
Q ss_pred CC---ccEEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--ceEEEEeccCCccccccCCCeEEEE
Q 000681 1266 HK---DAYLTIDAH------RGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLT 1333 (1354)
Q Consensus 1266 ~~---~~v~~l~~h------~~~VtsLafspdg~~Lasgs-~Dg~I~Iwd~~g--~~l~~i~~~h~~fl~~~~~~V~sLa 1333 (1354)
.. ..+..+... ......++++|+|++|.++. .++.|.+|+++. ..+..+.. .. ........++
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~~Pr~~~ 298 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGKFPRHFA 298 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSSSEEEEE
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCCCccEEE
Confidence 21 122222211 12578899999999877664 567899999742 23433332 11 0124579999
Q ss_pred EecCCCEEEEEEC-CCeEEEcC
Q 000681 1334 FHPYQVLLAAGSA-DACVSIHS 1354 (1354)
Q Consensus 1334 fspdg~~Lasgs~-Dg~V~IWd 1354 (1354)
++|+|++|++++. ++.|.+|+
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEE
Confidence 9999999998885 67888873
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-07 Score=108.97 Aligned_cols=254 Identities=14% Similarity=0.233 Sum_probs=168.6
Q ss_pred cEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000681 1032 PIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS 1101 (1354)
Q Consensus 1032 ~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~ 1101 (1354)
.+.+|+.+++ ..-.+..|+.|+.+.+--. .+.+.+|+..+.+.+. -+-|. ..|+.+.+.+.+...
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~-~kl~~---~~i~~f~lSpgp~~~ 180 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ-HKLSV---SGITMLSLSPGPEPP 180 (566)
T ss_pred ceeeeeeccceehhheehhhhcCcccccccchhhhhhhh-cceEEEEecCCcccee-eeeec---cceeeEEecCCCCCc
Confidence 4567777765 1115788888887544322 5679999987633222 12233 679999995444445
Q ss_pred EEEE-----EeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EE--CC---------Ce
Q 000681 1102 LLLV-----ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SG--EV---------SS 1164 (1354)
Q Consensus 1102 ~L~t-----gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g--~D---------g~ 1164 (1354)
.+++ +|.-+.||||..... +....+ +...--.+-.+.+.|++.+.-|++ ++ -| .+
T Consensus 181 ~vAvyvPe~kGaPa~vri~~~~~~-~~~~~~-------a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~ 252 (566)
T KOG2315|consen 181 FVAVYVPEKKGAPASVRIYKYPEE-GQHQPV-------ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQT 252 (566)
T ss_pred eEEEEccCCCCCCcEEEEeccccc-cccchh-------hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccce
Confidence 5554 355578999998531 111111 111111222234889987765443 22 22 35
Q ss_pred EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEE--EECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec
Q 000681 1165 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242 (1354)
Q Consensus 1165 I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~s--gs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp 1242 (1354)
+++.++..+. +...+. ..++|.++ .|+++++.|++ |..-..+.|||++..- +..+ . .++-+++-|+|
T Consensus 253 Lyll~t~g~s-~~V~L~--k~GPVhdv-~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~---egpRN~~~fnp 321 (566)
T KOG2315|consen 253 LYLLATQGES-VSVPLL--KEGPVHDV-TWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--P---EGPRNTAFFNP 321 (566)
T ss_pred EEEEEecCce-EEEecC--CCCCceEE-EECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--C---CCCccceEECC
Confidence 8888888555 444443 46679999 77888876654 6677899999998654 3322 1 26778899999
Q ss_pred CCCCCEEEEEECC---CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEeCCCceEEE
Q 000681 1243 GLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA------KQLIKVFSLEGEQLGT 1313 (1354)
Q Consensus 1243 ~~~g~~Lasgs~D---G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~------Dg~I~Iwd~~g~~l~~ 1313 (1354)
. |++|+.++.+ |.|-|||+.+. +.+..+.... -+-+.|+|||.+|+|++. |+.++||+.+|..+..
T Consensus 322 ~--g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 322 H--GNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred C--CCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 9 9999988865 89999999986 6887777543 456899999999998865 7889999999987754
Q ss_pred E
Q 000681 1314 I 1314 (1354)
Q Consensus 1314 i 1314 (1354)
-
T Consensus 397 ~ 397 (566)
T KOG2315|consen 397 K 397 (566)
T ss_pred h
Confidence 3
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-06 Score=103.89 Aligned_cols=294 Identities=15% Similarity=0.109 Sum_probs=173.3
Q ss_pred ceEEEeeCCCcEEEEeCCCCCCeEEEEEc--------CCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEE
Q 000681 1022 FDLAVSKLNNPIACWDTRFEKGTKTALLQ--------PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1093 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~~~I~sL~fs--------pdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~ 1093 (1354)
..+.+...++.+..+|..++..+....+. .++..+++++.+|.+..+|.++|+.+....... .+.+..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p 141 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPP 141 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCC
Confidence 34555556666777776665333222221 246778888889999999999999887765433 232211
Q ss_pred EEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCC
Q 000681 1094 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE 1173 (1354)
Q Consensus 1094 f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~ 1173 (1354)
. -.+..++.++.+|.|..||..+ ++..-. .. ............ .... .++.++++..+|.+..+|.+++
T Consensus 142 ~---v~~~~v~v~~~~g~l~a~d~~t--G~~~W~--~~-~~~~~~~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 142 L---VANGLVVVRTNDGRLTALDAAT--GERLWT--YS-RVTPALTLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred E---EECCEEEEECCCCeEEEEEcCC--CceeeE--Ec-cCCCceeecCCC-CCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 1 1355777888899999999876 332211 00 111000000000 0111 2357788888899999999998
Q ss_pred ceeeeeecCCCC---CCe---EEEE-EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000681 1174 QQMVNPIPSSSD---CSI---SALT-ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1246 (1354)
Q Consensus 1174 ~~~v~~i~~~~~---~~V---tsl~-~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g 1246 (1354)
+ .+........ ..+ ..+. .....+..+++++.+|.++.||..+++..... . . ........ . +
T Consensus 211 ~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~-~-~----~~~~~p~~--~--~ 279 (377)
T TIGR03300 211 Q-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR-D-A----SSYQGPAV--D--D 279 (377)
T ss_pred C-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee-c-c----CCccCceE--e--C
Confidence 8 5544332110 000 0000 00013567888889999999999988743322 1 1 11122222 3 5
Q ss_pred CEEEEEECCCcEEEEeCCCCCccEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCceEEEEeccCCccccc
Q 000681 1247 AKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQ 1324 (1354)
Q Consensus 1247 ~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~ 1324 (1354)
..++.++.||.|..+|..++ +.+...... .....+... .+..+++++.+|.|.++|. +|+.+..++. +..
T Consensus 280 ~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~~~---- 351 (377)
T TIGR03300 280 NRLYVTDADGVVVALDRRSG-SELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-DGS---- 351 (377)
T ss_pred CEEEEECCCCeEEEEECCCC-cEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CCC----
Confidence 67888889999999999888 455444221 122222222 3568889999999999994 6888888775 331
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1325 KIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1325 ~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
....+..+. + ..|..++.||.|..|
T Consensus 352 --~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 --GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred --ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 112222332 3 357788899999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=131.53 Aligned_cols=194 Identities=15% Similarity=0.295 Sum_probs=148.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..|.++.=||...+.+||+.||.|++|.+..++.+..+....+ .+|+.+.| +..|+.+..+..||.+.+|....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCceeeeccCCceeecccCC--
Confidence 5678888899999999999999999999999999998886553 78999999 67899999999999999999842
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---CCCeEEEEECCCCc--eeeeeecCCCCCCeEEEEEEcC
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~Dg~I~VWDl~t~~--~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
+.. -..+.|...... +.|- +..++++| +++.+.+||..-.. .++. ..|.++ ++++ .+-|
T Consensus 2283 ---k~~---~s~qchnk~~~D----f~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l-~~~P 2346 (2439)
T KOG1064|consen 2283 ---KPY---TSWQCHNKALSD----FRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVL-AYAP 2346 (2439)
T ss_pred ---cce---eccccCCccccc----eeee--ehhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEE-EEcC
Confidence 333 234556666666 3333 25555553 67899999976433 1333 445444 9999 6678
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~ 1274 (1354)
....|++|+.+|.|++||+|..+ +...++. ++ . ..+|++|+..|.|+||++... ..+.++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrq-l~h~~~~------------~~-~--~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA------------LD-T--REYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHH-HHHHhhh------------hh-h--hheeeccCcccceEEEEcccc-chhhcCc
Confidence 88999999999999999999877 4443321 33 3 679999999999999999877 4665554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-07 Score=111.29 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=142.7
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecC--CCCCCeEEEEEE-------------------cCCCCEEEEEECCCeE
Q 000681 1152 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPS--SSDCSISALTAS-------------------QVHGGQLAAGFVDGSV 1210 (1354)
Q Consensus 1152 ~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~--~~~~~Vtsl~~~-------------------s~~g~~L~sgs~DGsV 1210 (1354)
...+++....||.+++||..+++ ....+.. +..+..++..|- +.+...++-|...|.|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 34567777899999999999887 5555432 111112222121 1133578889999999
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1211 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1211 rIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
.+|+...++ +...+ .-.+|.+.|+++.++.+ -..|.+++.|+.+..|+.... ..+..+......+.+++++|||.
T Consensus 83 ~~ys~~~g~-it~~~-st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKL-STDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCe-EEEEE-ecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCCC
Confidence 999999888 44444 33478899999999888 889999999999999999987 68888888888999999999999
Q ss_pred EEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecC-----CCEEEEEE-CCCeEEEc
Q 000681 1291 IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-----QVLLAAGS-ADACVSIH 1353 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspd-----g~~Lasgs-~Dg~V~IW 1353 (1354)
++++++ +.|++||+ +++.+..|.+ |. ++|++++|.-+ |.++.++. .+..+.+|
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftg-h~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTG-HG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecC-CC-------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 999998 78999995 5677788887 65 89999999887 66655554 35556665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-05 Score=90.36 Aligned_cols=263 Identities=10% Similarity=0.174 Sum_probs=173.2
Q ss_pred CCcEEEEeCCCC-------------CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CceEEEeeCCCCCCCCeEE
Q 000681 1030 NNPIACWDTRFE-------------KGTKTALLQPFSPIVVAADE---NERIKIWNYEE--DTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1030 d~~I~iWd~~~~-------------~~I~sL~fspdg~~Latgs~---Dg~I~IWd~~t--g~~l~~~~~h~~~~~~Its 1091 (1354)
...|.+|++.+. ..++-|+|+|++++|.++.. +|.|..|.++. |++ ..+.....++..-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeE
Confidence 558899998743 67889999999998888753 57888888875 433 222222222344478
Q ss_pred EEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEEeeeecccCCCCC----------cccceeEEEEecCCCeEEEEE
Q 000681 1092 LCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG----------VRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~----------V~si~~~v~~sp~~~~Lla~g 1160 (1354)
+++ +.++++|+++.. .|.|.++.+... |...... + ...|... +.. ..+.|+++++++..
T Consensus 94 vsv--d~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v--~-~~~h~g~~p~~rQ~~~h~H~----a~~tP~~~~l~v~D 163 (346)
T COG2706 94 VSV--DEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVV--Q-VVKHTGSGPHERQESPHVHS----ANFTPDGRYLVVPD 163 (346)
T ss_pred EEE--CCCCCEEEEEEccCceEEEEEcccC-Cccccce--e-eeecCCCCCCccccCCccce----eeeCCCCCEEEEee
Confidence 888 789999998864 588999998663 3322221 1 1112222 333 77889999999984
Q ss_pred -CCCeEEEEECCCCceeeee--ecCCCCCCeEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCCeeeEeecCCC------C
Q 000681 1161 -EVSSIMLWDLEKEQQMVNP--IPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHT------Q 1230 (1354)
Q Consensus 1161 -~Dg~I~VWDl~t~~~~v~~--i~~~~~~~Vtsl~~~s~~g~~L~sgs-~DGsVrIwDlr~~~~~~~~~~~~~------~ 1230 (1354)
.-..|.+|++..+. .... .....+..-..| .++|++++..+.+ -+++|.+|........+..++.+. .
T Consensus 164 LG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 164 LGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHI-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred cCCceEEEEEcccCc-cccccccccCCCCCcceE-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 33459999998665 2211 111233446888 7889999877666 489999999887422222222110 1
Q ss_pred CCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCccEEE---EecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLT---IDAHRGSLSALAVHRHAPIIASGSAK-QLIKVFS 1305 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~-DG~I~IWDl~~~~~~v~~---l~~h~~~VtsLafspdg~~Lasgs~D-g~I~Iwd 1305 (1354)
...+...|+++++ |++|.++.. ...|.+|.+......+.. ...+...-+.+.|+++|++|+++..+ ..|.+|.
T Consensus 242 g~~~~aaIhis~d--GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 242 GTNWAAAIHISPD--GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCCceeEEEECCC--CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence 2457888999999 999988764 246888887654323332 22344457899999999988888664 4689998
Q ss_pred CC
Q 000681 1306 LE 1307 (1354)
Q Consensus 1306 ~~ 1307 (1354)
.+
T Consensus 320 ~d 321 (346)
T COG2706 320 RD 321 (346)
T ss_pred Ec
Confidence 54
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-07 Score=102.93 Aligned_cols=216 Identities=14% Similarity=0.236 Sum_probs=153.3
Q ss_pred eEEEeeCCCcEEEEeCCCC------------CCeEEEEEcCCCCEEEEEECCCcEEEEECC----CCceEEEeeCCCCCC
Q 000681 1023 DLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNYE----EDTLLNSFDNHDFPD 1086 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~----tg~~l~~~~~h~~~~ 1086 (1354)
.+.+..+|.++++|--... .+++++.++++...|++|-.+|++.-+.+. ....++.+..|.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~--- 114 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ--- 114 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh---
Confidence 4666777889999976553 789999999999999999999999988553 345566677788
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~ 1166 (1354)
..|..+.| +.....+++.+.|..+. |-...... . +.++.-...+.. +.+. -.+.++|...|.|.
T Consensus 115 ~~v~~~if--~~~~e~V~s~~~dk~~~-~hc~e~~~--~-------lg~Y~~~~~~t~--~~~d--~~~~fvGd~~gqvt 178 (404)
T KOG1409|consen 115 ARVSAIVF--SLTHEWVLSTGKDKQFA-WHCTESGN--R-------LGGYNFETPASA--LQFD--ALYAFVGDHSGQIT 178 (404)
T ss_pred cceeeEEe--cCCceeEEEeccccceE-EEeeccCC--c-------ccceEeeccCCC--Ccee--eEEEEecccccceE
Confidence 88999999 67788999999887664 54322111 1 111111111111 1111 11445555556555
Q ss_pred EEECC--CCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000681 1167 LWDLE--KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1167 VWDl~--t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~ 1244 (1354)
+-.+. .-. .+.++.+|.+. ++++ .+.+....+.+|..|..|.+||+-..+.... ...+|...|..+..-+.
T Consensus 179 ~lr~~~~~~~-~i~~~~~h~~~-~~~l-~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~---el~gh~~kV~~l~~~~~- 251 (404)
T KOG1409|consen 179 MLKLEQNGCQ-LITTFNGHTGE-VTCL-KWDPGQRLLFSGASDHSVIMWDIGGRKGTAY---ELQGHNDKVQALSYAQH- 251 (404)
T ss_pred EEEEeecCCc-eEEEEcCcccc-eEEE-EEcCCCcEEEeccccCceEEEeccCCcceee---eeccchhhhhhhhhhhh-
Confidence 54433 333 67778888776 9999 6777888999999999999999987664433 34477789999988887
Q ss_pred CCCEEEEEECCCcEEEEeCCC
Q 000681 1245 DPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1245 ~g~~Lasgs~DG~I~IWDl~~ 1265 (1354)
-..+.+++.||.|.+||++.
T Consensus 252 -t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 -TRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -heeeeeccCCCeEEEEeccc
Confidence 88999999999999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.5e-07 Score=108.72 Aligned_cols=205 Identities=17% Similarity=0.151 Sum_probs=133.1
Q ss_pred CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCC
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDC 1186 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D---g~I~VWDl~t~~~~v~~i~~~~~~ 1186 (1354)
..|.++|... ...+. +..+...+.+ ..|+|++..++.+..+ ..|++||+.+++ .. .+......
T Consensus 170 ~~l~~~d~~g--~~~~~------l~~~~~~~~~----p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~-~~~~~~~~ 235 (417)
T TIGR02800 170 YELQVADYDG--ANPQT------ITRSREPILS----PAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-RE-KVASFPGM 235 (417)
T ss_pred ceEEEEcCCC--CCCEE------eecCCCceec----ccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EeecCCCC
Confidence 3567777632 22222 2334444555 7899999999887533 479999999876 32 22222222
Q ss_pred CeEEEEEEcCCCCEEEE-EECCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000681 1187 SISALTASQVHGGQLAA-GFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1260 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~s-gs~DG--sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG--~I~I 1260 (1354)
+.++ .++++|+.|+. .+.+| .|++||+.++. ..... .+........|+|+ |+.|+..+. +| .|.+
T Consensus 236 -~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~----~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 236 -NGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLT----NGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred -ccce-EECCCCCEEEEEECCCCCccEEEEECCCCC-EEECC----CCCCCCCCEEECCC--CCEEEEEECCCCCceEEE
Confidence 5556 67889987764 44444 58889988765 22221 22244556789998 888776654 33 5888
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg---~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
+|+.++ ....+..+...+....|+|+|++|+.++.++ .|.+||+.+.....+.. . .......|+|+
T Consensus 307 ~d~~~~--~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------~~~~~p~~spd 375 (417)
T TIGR02800 307 MDADGG--EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T--------GLDESPSFAPN 375 (417)
T ss_pred EECCCC--CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C--------CCCCCceECCC
Confidence 888766 3444554556678889999999998887765 78888977655544433 1 12344689999
Q ss_pred CCEEEEEECCC
Q 000681 1338 QVLLAAGSADA 1348 (1354)
Q Consensus 1338 g~~Lasgs~Dg 1348 (1354)
|++|+.++.++
T Consensus 376 g~~l~~~~~~~ 386 (417)
T TIGR02800 376 GRMILYATTRG 386 (417)
T ss_pred CCEEEEEEeCC
Confidence 99888877754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-06 Score=106.35 Aligned_cols=234 Identities=11% Similarity=0.096 Sum_probs=145.5
Q ss_pred cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCCCc
Q 000681 1064 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1140 (1354)
Q Consensus 1064 ~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1140 (1354)
.|.++|.+.+. ...+..+. ..+....| ++||+.|+..+.+ ..|.+|++.+ +..+.+ ......+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~---~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~l------~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR---EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQI------TNFEGLN 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCC---CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCC--CCEEEc------cCCCCCc
Confidence 46677776443 34454455 57888888 7899988776543 3688888865 333322 2222222
Q ss_pred ccceeEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC--eEEEEE
Q 000681 1141 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1214 (1354)
Q Consensus 1141 ~si~~~v~~sp~~~~Lla~-g~Dg--~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG--sVrIwD 1214 (1354)
.. ..|+|++..|+.. ..+| .|++||+.++. . ..+..+... .+.. .++++|+.++..+. +| .|+++|
T Consensus 246 ~~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~-~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 246 GA----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-L-SRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CC----eEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEE
Confidence 33 7899999988755 3444 68899998876 3 334433222 4455 57889988776654 33 577778
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCE
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1291 (1354)
Q Consensus 1215 lr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D-G--~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~ 1291 (1354)
+.+++ ..... ..+ .......|+|+ |+.|+..+.+ + .|.+||+.++. ...+.. ........|+|+|+.
T Consensus 318 ~~~g~-~~~lt--~~~--~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 318 VNGGR-AERVT--FVG--NYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRGS--VRILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred CCCCC-EEEee--cCC--CCccceEECCC--CCEEEEEEccCCceEEEEEECCCCC--EEEccC-CCCCCCceECCCCCE
Confidence 87766 22221 111 23345789999 8888776643 3 48889998763 233332 222335689999998
Q ss_pred EEEEeCC---CcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1292 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1292 Lasgs~D---g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
++..+.+ ..|.+++.+|.....+.. +. +.+...+|+|.
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRLPLPT-AQ-------GEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 8766543 357777888876655544 32 45666777764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=117.35 Aligned_cols=224 Identities=18% Similarity=0.237 Sum_probs=153.3
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
.+..|.+|. ..|..+.-+ .+.+-+++++.|++|++|.+...........+.-+++.|+.+|.++++ -.+.+
T Consensus 727 rL~nf~GH~---~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf----L~~lr 797 (1034)
T KOG4190|consen 727 RLCNFTGHQ---EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF----LADLR 797 (1034)
T ss_pred eeecccCcH---HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee----eeccc
Confidence 355678888 788887764 577889999999999999997643333333344568899999999544 33444
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeec-CCCCCCeEEEEEEc-CCCCEEEEE-ECCCeEEEEECCCCCeeeEeecCC--C
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQ-VHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--T 1229 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~-~~~~~~Vtsl~~~s-~~g~~L~sg-s~DGsVrIwDlr~~~~~~~~~~~~--~ 1229 (1354)
++ ++.||.|.+||.-.++ .+..+. ....+.+..+.... .+..++++| +...+|+++|.|..+ ..+.++.. .
T Consensus 798 ~i--~ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~ 873 (1034)
T KOG4190|consen 798 SI--ASCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAP 873 (1034)
T ss_pred ee--eeccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCC
Confidence 44 4568889999977666 443222 21122233332223 255666666 678899999999876 34433322 3
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE-Ee-CC
Q 000681 1230 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV-FS-LE 1307 (1354)
Q Consensus 1230 ~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I-wd-~~ 1307 (1354)
+.+..+.++++.+. |+.++.|-.+|.|.+.|.|++ ..+..++.-.-....++ .|..+.++....|.++.| |. ++
T Consensus 874 ~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 874 GPNALTRAIAVADK--GNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCchheeEEEeccC--cchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 45577899999998 999999999999999999999 56776665443333333 355567888888899998 87 66
Q ss_pred CceEEEEe
Q 000681 1308 GEQLGTIR 1315 (1354)
Q Consensus 1308 g~~l~~i~ 1315 (1354)
|....+.+
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 65555444
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=127.55 Aligned_cols=224 Identities=18% Similarity=0.242 Sum_probs=156.7
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEE
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~V 1167 (1354)
.|.++.- .+...+-+||+.||.|++|.... .+.+.+|++... ..|+. +.|+.+|+.+-++..||.+.+
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~--s~vtr----~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGN--SRVTR----SRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccC----CCeEEEeeccCc--chhhh----hhhcccCCceeeeccCCceee
Confidence 3444444 35677889999999999999843 444556665543 66666 678889999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000681 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1168 WDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs---~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~ 1244 (1354)
|.+. .+ .....+.|... .+.+.+.. ..+++++ .++.+.+||.-....... .+..|.+.++++++-|.
T Consensus 2278 ~q~~-pk-~~~s~qchnk~-~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2278 WQAS-PK-PYTSWQCHNKA-LSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSL---VHTCHDGGATVLAYAPK- 2347 (2439)
T ss_pred cccC-Cc-ceeccccCCcc-ccceeeee---hhhhccccCCCCCcccchhcccCcccce---eeeecCCCceEEEEcCc-
Confidence 9988 44 57777777655 66664442 4555543 467899999875442222 23678899999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-eEEEEecc--CCcc
Q 000681 1245 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE-QLGTIRYH--HPSF 1321 (1354)
Q Consensus 1245 ~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~-~l~~i~~~--h~~f 1321 (1354)
...|++|+.+|.|++||++.. +..++++. ++ ...++++|+..|.|+||++++- .+.++... |.+|
T Consensus 2348 -~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2348 -HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred -ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 999999999999999999976 56655553 44 5679999999999999997643 33333221 4444
Q ss_pred ccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1322 MAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
... .+ ..+-..+ .+.|.+|+.||+
T Consensus 2416 Fr~-~g--~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FRN-IG--MQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred hhh-cC--ceeeecc-CceEEEecCCCC
Confidence 322 12 3333333 346667777764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-08 Score=105.87 Aligned_cols=287 Identities=15% Similarity=0.227 Sum_probs=173.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----ceEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEE
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFP---------DKGISKLCLVNELDVSLLLV 1105 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-----~~l~~~~~h~~~---------~~~ItsL~f~~s~d~~~L~t 1105 (1354)
....|+++.|...|.||++|+..|.|.+|.-+.. +....|++|.+. ...|..+.|........++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999965532 334446666531 14688899974444556777
Q ss_pred EeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE--------E-CCCeEEEEECCCCcee
Q 000681 1106 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS--------G-EVSSIMLWDLEKEQQM 1176 (1354)
Q Consensus 1106 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~--------g-~Dg~I~VWDl~t~~~~ 1176 (1354)
.+.|.+|++|.++. ...+++.. ..+. ..+. +|.++-+.+. + .|..|... +
T Consensus 105 stNdktiKlWKiye--knlk~va~-nnls---~~~~--------~~~~g~~~s~~~l~lprls~hd~iiaa~-------p 163 (460)
T COG5170 105 STNDKTIKLWKIYE--KNLKVVAE-NNLS---DSFH--------SPMGGPLTSTKELLLPRLSEHDEIIAAK-------P 163 (460)
T ss_pred ecCCceeeeeeeec--ccchhhhc-cccc---cccc--------cccCCCcCCHHHhhcccccccceEEEec-------c
Confidence 78899999999987 22222210 0010 0010 0111111111 0 11111111 1
Q ss_pred eeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCC-----CCCeEEEEEecCCCCCEEEE
Q 000681 1177 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ-----VERVVGISFQPGLDPAKIVS 1251 (1354)
Q Consensus 1177 v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h-----~~~I~sv~fsp~~~g~~Las 1251 (1354)
.+.....+..-|.++ .+..+...++++ .|=.|.+|++.-......+.. ...| ..-|++..|+|. ....+.-
T Consensus 164 ~rvyaNaH~yhiNSi-S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~-~cn~fmY 239 (460)
T COG5170 164 CRVYANAHPYHINSI-SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPE-MCNVFMY 239 (460)
T ss_pred ceeccccceeEeeee-eecCchheeeec-cceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHh-HcceEEE
Confidence 111211222337888 555565555554 577899999875543333321 1112 245889999998 6788888
Q ss_pred EECCCcEEEEeCCCCCcc---EEE------------EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe--CCCceEEEE
Q 000681 1252 ASQAGDIQFLDIRNHKDA---YLT------------IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTI 1314 (1354)
Q Consensus 1252 gs~DG~I~IWDl~~~~~~---v~~------------l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd--~~g~~l~~i 1314 (1354)
.+..|.|++-|+|...-+ ... +.+-...|+.+.|+++|++|++-+. -+|+||| +...++.++
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 889999999999943211 111 1112347889999999999998765 5899999 457788887
Q ss_pred eccCCcccc--------ccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1315 RYHHPSFMA--------QKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1315 ~~~h~~fl~--------~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
.- |...+. ...-.-..+.|+-|...+.+|+-.+..-||
T Consensus 319 ~~-h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 319 PM-HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ch-HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 65 543211 111122456788888888887766555444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-06 Score=106.62 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=142.3
Q ss_pred cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CC--eEEEEEccCCCCcceEEeeeecccCCCCCc
Q 000681 1064 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1140 (1354)
Q Consensus 1064 ~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~-DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1140 (1354)
.|.++|.+... .+.+..+. ..+.+..| ++||+.|+..+. ++ .|.+||+.+ ++...+ ....+ ..
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~---~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~t--g~~~~l---t~~~g---~~ 264 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSP---EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYT--QVREKV---TSFPG---IN 264 (448)
T ss_pred EEEEEeCCCCC-ceEeecCC---CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCC--CCeEEe---cCCCC---Cc
Confidence 45666765433 23444444 57788888 789998887654 33 577888755 333322 11222 22
Q ss_pred ccceeEEEEecCCCeEEEE-ECCCe--EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC--eEEEEE
Q 000681 1141 RCSNVVVDWQQQSGYLYAS-GEVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1214 (1354)
Q Consensus 1141 ~si~~~v~~sp~~~~Lla~-g~Dg~--I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG--sVrIwD 1214 (1354)
.. ..|+|++..|+.+ ..+|. |+++|+.+++ ...+..+.. ..... .++++|+.++..+. +| .|.++|
T Consensus 265 ~~----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~-~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GA----PRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA-IDTEP-SWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CC----eeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC-Cccce-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988765 45554 8888988776 344443322 24555 67889988776654 34 466677
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCE
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1291 (1354)
Q Consensus 1215 lr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG--~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~ 1291 (1354)
+.+++ ..... ..+ .......|+|+ |+.|+..+. ++ .|.++|+.++. ...+... .......|+|+|+.
T Consensus 337 l~~g~-~~~Lt--~~g--~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~-~~d~~ps~spdG~~ 406 (448)
T PRK04792 337 LASGK-VSRLT--FEG--EQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETGA--MQVLTST-RLDESPSVAPNGTM 406 (448)
T ss_pred CCCCC-EEEEe--cCC--CCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCCC--eEEccCC-CCCCCceECCCCCE
Confidence 77665 22221 111 22345789999 777776654 34 45667877662 2333322 12234589999997
Q ss_pred EEEEeC-CC--cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000681 1292 IASGSA-KQ--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1292 Lasgs~-Dg--~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
|+..+. ++ .+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 407 I~~~~~~~g~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~Wsp~ 447 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSIDGRFKARLPA-GQ-------GEVKSPAWSPF 447 (448)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 776544 33 37777888887777765 33 45667788773
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-08 Score=113.93 Aligned_cols=238 Identities=12% Similarity=0.168 Sum_probs=170.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCc--------ceEEeeeecccCCCCCcccceeEEEEecCCCeEEE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK--------QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1158 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~--------~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla 1158 (1354)
....++.| +.+.+++++||.||.++|-.+.+.... ..-.+.-+++.||...|.- +.|+.+...|-+
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v----vTWNe~~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV----VTWNENNQKLTT 88 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE----EEeccccccccc
Confidence 47788999 689999999999999999998653111 1112233678899988876 999988888888
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000681 1159 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1159 ~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv 1238 (1354)
+..+|.|.||-+-.+.-+...+.....+.|.++ .|..+|..+.....||.|.+=.+..+...-+.. . ......+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-sWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---k--g~~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-SWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---K--GQLLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEE-EEcCCCcEEEEEEccCCEEEEeeccceecchhc---c--hheccce
Confidence 889999999999887733344455556668899 778899999999999999887776554222211 1 1345688
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCC------ccEEEEe----cCCCCeEEEEE--------cCCCCEEEEEeCCCc
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTID----AHRGSLSALAV--------HRHAPIIASGSAKQL 1300 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~DG~I~IWDl~~~~------~~v~~l~----~h~~~VtsLaf--------spdg~~Lasgs~Dg~ 1300 (1354)
.|+++ .+.++.+-.+|.+.+||....- .+..... .....|-.+.| -|+.+.+|.+-.+|.
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 99999 8888888889999999976431 1111111 11123445555 358889999999999
Q ss_pred EEEEeCCCc-eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1301 IKVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1301 I~Iwd~~g~-~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
+.|-...+. ....+.. .-.|....|+++|..||++|.|
T Consensus 241 ~QiMR~eND~~Pvv~dt---------gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---------GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhcCCCCCeEEec---------ccEeecceecCCCcEEEEccCc
Confidence 998873332 2222222 1468899999999999999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-05 Score=94.16 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=164.4
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC----------CCeEEEEE
Q 000681 1052 FSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC----------NGNIRIWK 1116 (1354)
Q Consensus 1052 dg~~Latgs~D-----g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~----------DG~IrIWd 1116 (1354)
++..+.+.+.. ++|.+.|.++++.+..+.....+ ..+ + ++|++.|+++.. +..|.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----NPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----cee-E--CCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 44455554433 89999999999999999876622 223 5 789998888765 78999999
Q ss_pred ccCCCCcceEEeeeecccCCCCC--cccceeEEEEecCCCeEEEEE-C-CCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASG-E-VSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~--V~si~~~v~~sp~~~~Lla~g-~-Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
..+.+-..++. +. .... +-.....+.++++++.+++.. + +..|.+.|+.+++ .+.++...... .-.
T Consensus 84 ~~t~~~~~~i~-----~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp~~~--~vy- 153 (352)
T TIGR02658 84 PQTHLPIADIE-----LP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVPDCY--HIF- 153 (352)
T ss_pred CccCcEEeEEc-----cC-CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCCCCc--EEE-
Confidence 97732222222 11 0100 000011278899999999886 4 7899999999999 88888763322 211
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCe-eeEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEeCCCCC---
Q 000681 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK--- 1267 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~DGsVrIwDlr~~~~-~~~~~~~~~~h~~~I~-sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~--- 1267 (1354)
.. ....+.+-|.||......+..... .......+.+....+. .-.+.+. +|.++..... |+|.+.|+....
T Consensus 154 ~t--~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 154 PT--ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred Ee--cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCccee
Confidence 11 222233455677666544443221 1111111100000000 0034552 2777766666 999999965431
Q ss_pred -ccEEEEec-------CCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCceEEEEeccCCccccccCCC
Q 000681 1268 -DAYLTIDA-------HRGSLSALAVHRHAPIIASGS----------AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS 1328 (1354)
Q Consensus 1268 -~~v~~l~~-------h~~~VtsLafspdg~~Lasgs----------~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~ 1328 (1354)
..+..+.. ..+.+.-++++++++.+.... ..+.|.++| .+++.+..+.. ...
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~ 300 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHE 300 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCc
Confidence 22322221 123344599999999776632 125799999 45667777764 256
Q ss_pred eEEEEEecCCC-EEEEEE-CCCeEEEcC
Q 000681 1329 VNCLTFHPYQV-LLAAGS-ADACVSIHS 1354 (1354)
Q Consensus 1329 V~sLafspdg~-~Lasgs-~Dg~V~IWd 1354 (1354)
+..++++||++ .|.+.+ .++.|.|+|
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 89999999999 777666 478888875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.9e-06 Score=107.87 Aligned_cols=317 Identities=15% Similarity=0.180 Sum_probs=196.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEE----eCCCC---------CCeEEEEEcCCCCEEEEEECCCcEEEEECC-------
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACW----DTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYE------- 1071 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iW----d~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~------- 1071 (1354)
+...++-.+...++..-.+|.|-+. +.... .+|.+++||||+..|+..+.+|++.+-+-+
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV 157 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence 5566666666677777777777777 44433 789999999999999999989988876321
Q ss_pred --------C--------CceEEEeeCCCCC---------------------CCCeEEEEEEeeCCCCEEEEEeC---C--
Q 000681 1072 --------E--------DTLLNSFDNHDFP---------------------DKGISKLCLVNELDVSLLLVASC---N-- 1109 (1354)
Q Consensus 1072 --------t--------g~~l~~~~~h~~~---------------------~~~ItsL~f~~s~d~~~L~tgs~---D-- 1109 (1354)
. |+....|+|.... ...-..++| -.||.++++.+- .
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~ 235 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGS 235 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCc
Confidence 0 1222333322100 012335556 789999999875 3
Q ss_pred -CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---CCCeEEEEECCCCceeeeeecC-CC
Q 000681 1110 -GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPS-SS 1184 (1354)
Q Consensus 1110 -G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~Dg~I~VWDl~t~~~~v~~i~~-~~ 1184 (1354)
..+|||+-+ | .+. ....++..+.-.++|.|.|+.|++.. +...|.+|.-+.-+.....++. ..
T Consensus 236 ~R~iRVy~Re---G--~L~-------stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 236 RRVIRVYSRE---G--ELQ-------STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPE 303 (928)
T ss_pred eeEEEEECCC---c--eEE-------eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCC
Confidence 467788742 3 222 11223333333589999999888874 3455777775443311223332 34
Q ss_pred CCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000681 1185 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264 (1354)
Q Consensus 1185 ~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~ 1264 (1354)
...|..+ .|+.++..|+....|. |.+|-..+..-..+..-.+ .....+..+.|+|. +...|..++.+|.+..++..
T Consensus 304 ~~~v~~l-~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~-~~~~~~~~~~Wdpe-~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 304 EEKVIEL-AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF-SSSESVNFVKWDPE-KPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CceeeEE-EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc-cCCCCCCceEECCC-CCCEEEEEecCCcEEEEEEE
Confidence 4568999 7889999999988666 9999988765222221112 12234556999998 67778888887877665532
Q ss_pred ----CCC-------ccEEEEec-----------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q 000681 1265 ----NHK-------DAYLTIDA-----------------------HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1310 (1354)
Q Consensus 1265 ----~~~-------~~v~~l~~-----------------------h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~ 1310 (1354)
.+. ..+..+.+ -..+|.+++|++++..+|+-..||.|.+|....+.
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 110 11222221 14579999999999889999999999999843221
Q ss_pred EE---------EEeccC---CccccccCCCeEEEEEecCCCEEEEEECC
Q 000681 1311 LG---------TIRYHH---PSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1347 (1354)
Q Consensus 1311 l~---------~i~~~h---~~fl~~~~~~V~sLafspdg~~Lasgs~D 1347 (1354)
.. .+.. + ..........+..++|..+...++....+
T Consensus 460 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 460 MWSVKPPKLLSSISL-DSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cccccCcchhhhccc-ccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 11 1111 0 00001123567888888888776666654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-05 Score=87.75 Aligned_cols=270 Identities=13% Similarity=0.220 Sum_probs=174.1
Q ss_pred CCcEEEEECCCCc-eEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEeC---CCeEEEEEccCCCCcceEEeeeecccC
Q 000681 1062 NERIKIWNYEEDT-LLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQG 1135 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~-~l~~--~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~ 1135 (1354)
+..|.+|++++.. .+.. .-... +..+-|+| +++++.|+++.. +|.|-.|.+....|...++... .+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhcccc---CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCC
Confidence 5779999887431 1111 11222 56788999 789999999865 4778888887644665554221 1222
Q ss_pred CCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceee---eeecCCCC--------CC-eEEEEEEcCCCCEEE
Q 000681 1136 HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMV---NPIPSSSD--------CS-ISALTASQVHGGQLA 1202 (1354)
Q Consensus 1136 h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v---~~i~~~~~--------~~-Vtsl~~~s~~g~~L~ 1202 (1354)
+.. . .++.++++.+++++. ..|.|.++-++..-... ..+. |.+ .+ +... -+.|++++++
T Consensus 89 ~~p--~----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a-~~tP~~~~l~ 160 (346)
T COG2706 89 SPP--C----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSA-NFTPDGRYLV 160 (346)
T ss_pred CCC--e----EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCcccee-eeCCCCCEEE
Confidence 221 2 378889999999986 67999999986632011 1111 111 11 3444 5778998888
Q ss_pred EEEC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCccEEEEecC----
Q 000681 1203 AGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH---- 1276 (1354)
Q Consensus 1203 sgs~-DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~~~~~v~~l~~h---- 1276 (1354)
+..- --.|.+|++..++ +.......-.....-+.|.|+|+ +++..+.+ -+++|.+|........+..++.+
T Consensus 161 v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EeecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 7653 3469999998665 22111111123467889999999 88887766 58999999998743344444432
Q ss_pred -----CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCC--CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC-
Q 000681 1277 -----RGSLSALAVHRHAPIIASGSA-KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD- 1347 (1354)
Q Consensus 1277 -----~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~D- 1347 (1354)
......+.++++|++|.++.. ...|.+|.++ +..+..+.. .. .+......+.|++++++|++++.|
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCcCCccceeCCCCCEEEEEccCC
Confidence 346778999999999988743 2368888743 444554443 22 122347889999999999999874
Q ss_pred CeEEEc
Q 000681 1348 ACVSIH 1353 (1354)
Q Consensus 1348 g~V~IW 1353 (1354)
.+|.+|
T Consensus 313 d~i~vf 318 (346)
T COG2706 313 DNITVF 318 (346)
T ss_pred CcEEEE
Confidence 457665
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=114.05 Aligned_cols=287 Identities=15% Similarity=0.171 Sum_probs=188.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccC
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~ 1119 (1354)
..++..+..+|.|+-+|.++.-| +.+-|++.. ..-.-+..-.+ -.|-++.|.+.+...+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 36788999999999999988554 556666543 32222222221 246677886555556666666666677899865
Q ss_pred C-CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEE-EECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC
Q 000681 1120 Q-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1120 ~-~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla-~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~ 1197 (1354)
+ ....+++ +.+|...++. +.|+++...+++ ++-|-.|..||+++....+..+..-+.. -+.+.+.-.+
T Consensus 101 ss~~aIef~-----lhghsraitd----~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~ 170 (1081)
T KOG0309|consen 101 SSSNAIEFV-----LHGHSRAITD----INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKD 170 (1081)
T ss_pred CCccceEEE-----EecCccceec----cccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccC
Confidence 3 2344555 7899999998 899988766555 5689999999999876455555443333 5666454445
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~ 1277 (1354)
++.+ +.+....|++||.|.+..+....+ +|...|..++|..- ....+.+.+.||+|++||..+..+.-.......
T Consensus 171 p~vl-asshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 171 PNVL-ASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cchh-hhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhh-hhhhhcccCCCCceeeecccccccccceecccc
Confidence 5544 455667899999999887777554 46688999998775 456789999999999999876532222223345
Q ss_pred CCeEEEEEcCCCCEEEE--EeCCCcEEEEeCC-----------CceEEEEeccCCccccccCCCeEEEEEecC-------
Q 000681 1278 GSLSALAVHRHAPIIAS--GSAKQLIKVFSLE-----------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPY------- 1337 (1354)
Q Consensus 1278 ~~VtsLafspdg~~Las--gs~Dg~I~Iwd~~-----------g~~l~~i~~~h~~fl~~~~~~V~sLafspd------- 1337 (1354)
.+|..-.+-|-|.-.+. .-.+..|-+++.+ ...+.++.+ |. ..|...-|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~-------D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HD-------DVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cc-------hHHHHHhhhhcccccCCC
Confidence 56777777776552221 1112244444321 356777887 65 44444444221
Q ss_pred ---CCEEEEEECCCeEEEc
Q 000681 1338 ---QVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1338 ---g~~Lasgs~Dg~V~IW 1353 (1354)
.-.|+|-+.|.++++|
T Consensus 318 d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CccceeEEEeecCCceEee
Confidence 2379999999999999
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-06 Score=100.61 Aligned_cols=215 Identities=14% Similarity=0.107 Sum_probs=133.5
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEeCCC--eEEEE
Q 000681 1042 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~D---g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~-tgs~DG--~IrIW 1115 (1354)
..+....|+|||+.|+..+.+ ..|.+||+.+++... +.... +.+....| ++||+.|+ +.+.+| .|.+|
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEE--CCCCCEEEEEEccCCCceEEEE
Confidence 457788999999988876533 368899998876533 22222 33446777 78998876 444555 57777
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-D--g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
|+.+ +.... +..+...... ..|+|++..++..++ + ..|+++|+.+++ ... +...... ....
T Consensus 273 d~~~--~~~~~------lt~~~~~~~~----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~-lt~~~~~-~~~~- 336 (430)
T PRK00178 273 DLAS--RQLSR------VTNHPAIDTE----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AER-VTFVGNY-NARP- 336 (430)
T ss_pred ECCC--CCeEE------cccCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE-eecCCCC-ccce-
Confidence 8755 32222 3333333333 789999998877653 3 358888887776 322 2211111 2233
Q ss_pred EEcCCCCEEEEEECC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCC
Q 000681 1193 ASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNH 1266 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~D-G--sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~ 1266 (1354)
.++++|+.++....+ | .|.+||+.+++. . .+.. . .......|+|+ |+.++..+.+ +.|.++++...
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~-~lt~-~---~~~~~p~~spd--g~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R-ILTD-T---SLDESPSVAPN--GTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCE-E-EccC-C---CCCCCceECCC--CCEEEEEEecCCceEEEEEECCCC
Confidence 578899988877653 3 588899988762 2 2211 1 12225689999 7877766644 34677777543
Q ss_pred CccEEEEecCCCCeEEEEEcCC
Q 000681 1267 KDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1267 ~~~v~~l~~h~~~VtsLafspd 1288 (1354)
....+..+.+.+...+|+|.
T Consensus 409 --~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 --VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --ceEECcCCCCCcCCCccCCC
Confidence 44455555666777788763
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.7e-06 Score=101.98 Aligned_cols=242 Identities=12% Similarity=0.051 Sum_probs=139.2
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCE---EEEEeCCCe--EEEEEccCCCCcceEEeeeecccCCC
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL---LLVASCNGN--IRIWKDYDQKDKQKLVTAFSSIQGHK 1137 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~---L~tgs~DG~--IrIWdl~~~~~~~~lvs~~~~l~~h~ 1137 (1354)
..|.+.|.+.+.. ..+.... ..+.+-.| ++||+. +++...+|. |.+.++.. +..+.+ ....
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~l------t~~~ 230 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKKI------LALQ 230 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCC--CCceEe------ecCC
Confidence 3566666664433 3344333 44556678 788864 335555554 55556644 433333 1122
Q ss_pred CCcccceeEEEEecCCCeEEEEEC-CC----eEEEEECCCCc-eeeeeecCCCCCCeEEEEEEcCCCCEEEEEE-CCCeE
Q 000681 1138 PGVRCSNVVVDWQQQSGYLYASGE-VS----SIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSV 1210 (1354)
Q Consensus 1138 ~~V~si~~~v~~sp~~~~Lla~g~-Dg----~I~VWDl~t~~-~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs-~DGsV 1210 (1354)
..... ..|+|+|..|+..++ +| .+.+||+..+. .....+........... .++++|+.|+..+ .+|..
T Consensus 231 g~~~~----p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 231 GNQLM----PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred CCccc----eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECCCCCc
Confidence 22223 789999999887653 22 34557776521 01222222221223455 6789999877665 46755
Q ss_pred EEE--ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccEEEEecCCCCeEEEEE
Q 000681 1211 RLY--DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1285 (1354)
Q Consensus 1211 rIw--Dlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~~~~v~~l~~h~~~VtsLaf 1285 (1354)
.+| ++.........+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.+++ ...+......+....|
T Consensus 306 ~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~--~~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATGR--DYQLTTSPENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe---ccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCCC--eEEccCCCCCccceEE
Confidence 555 443211112222 122346678899999 8888766543 369999998772 3344433446778999
Q ss_pred cCCCCEEEEEeC---CCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000681 1286 HRHAPIIASGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338 (1354)
Q Consensus 1286 spdg~~Lasgs~---Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg 1338 (1354)
+|||+.|+..+. .+.|.++|+++.....+.. .. +.+...+|+|..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~-------g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS-------GEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC-------CcccCceecCCC
Confidence 999997765432 3568888987766555543 22 456677888754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-05 Score=94.66 Aligned_cols=274 Identities=14% Similarity=0.144 Sum_probs=173.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCe----------
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN---------- 1111 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~---------- 1111 (1354)
.++..++|||.|.+|++.. -..|.+|....+..+..+... .|..+.| ++.+.+|.+=+..+.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~-----~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP-----DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cchhheeecCcchheehhh-ccceEEccccchhheeeeecC-----Cceeccc--CcccceeeeeccCCccChhhccCCc
Confidence 5678899999999999887 456999998887766666543 5888999 789999999765544
Q ss_pred -----EEEEEccCCCCcceEEeeeecccCCCCC--cccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC
Q 000681 1112 -----IRIWKDYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1184 (1354)
Q Consensus 1112 -----IrIWdl~~~~~~~~lvs~~~~l~~h~~~--V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~ 1184 (1354)
+.|||..+ ..++.. +.+...+ .+. .+.|+-++.+.+-. -...++|+++ +..-....+..-.
T Consensus 105 ~~~n~~~vwd~~s----g~iv~s---f~~~~q~~~~Wp---~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 105 TSKNNVFVWDIAS----GMIVFS---FNGISQPYLGWP---VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred cccCceeEEeccC----ceeEee---ccccCCcccccc---eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence 88999855 234422 3333222 222 37788777665544 3346999997 3320111222111
Q ss_pred CCCeEEEEEEcCCC--CEEEE-----EECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---
Q 000681 1185 DCSISALTASQVHG--GQLAA-----GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ--- 1254 (1354)
Q Consensus 1185 ~~~Vtsl~~~s~~g--~~L~s-----gs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~--- 1254 (1354)
...|... .++|.+ ..|+. +..++.+++|.+..+..+.. ..-+. ..=..+.|++. |+++++--.
T Consensus 173 ~~gi~dF-sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~lfk---~~~~qLkW~~~--g~~ll~l~~t~~ 245 (561)
T COG5354 173 PVGILDF-SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KNLFK---VSGVQLKWQVL--GKYLLVLVMTHT 245 (561)
T ss_pred ccceeeE-EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-eeeEe---ecccEEEEecC--CceEEEEEEEee
Confidence 2236666 344443 33332 45688999999986653322 11111 33456788888 777654321
Q ss_pred --------CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEeCCCceEEEEeccCCccccc
Q 000681 1255 --------AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG--SAKQLIKVFSLEGEQLGTIRYHHPSFMAQ 1324 (1354)
Q Consensus 1255 --------DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg--s~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~ 1324 (1354)
...++|++++.. .+.......++|...+|.|+++.+++. -.+..+.++|+.|+....+..
T Consensus 246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe-------- 315 (561)
T COG5354 246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE-------- 315 (561)
T ss_pred ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--------
Confidence 245888888854 333333557899999999998866554 578899999999885444332
Q ss_pred cCCCeEEEEEecCCCEEEEEECC---CeEEEcC
Q 000681 1325 KIGSVNCLTFHPYQVLLAAGSAD---ACVSIHS 1354 (1354)
Q Consensus 1325 ~~~~V~sLafspdg~~Lasgs~D---g~V~IWd 1354 (1354)
..=+.+.|+|++++++.++-| |.|-|||
T Consensus 316 --~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 316 --QKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred --cccccccccCcccEEEEecCCccccceEEec
Confidence 334556777777777776553 4565554
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=103.18 Aligned_cols=259 Identities=19% Similarity=0.284 Sum_probs=194.2
Q ss_pred HHHhhHHHHhcCCCCCCCCC-------cchhhHHHHhhchh-h--hhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhh
Q 000681 441 EQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQC-H--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 510 (1354)
Q Consensus 441 ~qLtafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~~-~--rlral~ll~~fld~g~wAv~lal~~gifpyvlklL 510 (1354)
+|+++.+.+-++-+..++|| |.+|-..+.|.... . ++.|--.|.+.-.-..-.-...+..|..|-|++||
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 57777777766666666666 78888888776322 3 33333333333322233344456789999999999
Q ss_pred ccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCC-cchhHHHHhhcHH
Q 000681 511 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH-RRGQEACIEAGLI 589 (1354)
Q Consensus 511 ~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~-~~gq~~~~~~~~~ 589 (1354)
+++..+++--+++-++.|...-+.|..-+++.+...-.+..|+.......+|. ++-+|+.||++- |.....- -..++
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~-v~~iL 239 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDV-VAPIL 239 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHH-HHHHH
Confidence 99999999999999999999999999999999999999999987664334454 445789999986 5555443 34567
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCC
Q 000681 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1354)
Q Consensus 590 ~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1354)
..+..+|. ..+++|.+=+|-+|+.|-++..+.-++.++.++.-+|..+|...++-|+..++-++|.++..
T Consensus 240 p~L~~ll~-------~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--- 309 (514)
T KOG0166|consen 240 PALLRLLH-------STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--- 309 (514)
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---
Confidence 88888888 78999999999999999999999888999999999999999999999999999999997711
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhhhcc-CCChhhhHHHHHHHHHHHHh
Q 000681 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS-DGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~-D~sp~VR~e~~~~l~~~v~~ 722 (1354)
. +.+-+.-+.......+..++. -...-.|+|+.+.+|-+...
T Consensus 310 --------~---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 310 --------S---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred --------c---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 1 111122234444455555554 44455899999999988764
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=111.96 Aligned_cols=246 Identities=13% Similarity=0.225 Sum_probs=162.0
Q ss_pred eEEEEEcCC--CCEEEEEECCCcEEEEECCC---CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1044 TKTALLQPF--SPIVVAADENERIKIWNYEE---DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1044 I~sL~fspd--g~~Latgs~Dg~I~IWd~~t---g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
|-.+.|++. -++-++......-.||++.. ......+.+|. ..|+++.|. .+....+++++.|-.|..||+.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---raitd~n~~-~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---RAITDINFN-PQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---cceeccccC-CCCCcceeeccccccceeeecc
Confidence 445556553 33555555566667787652 23444567787 899999994 4677899999999999999997
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
......-....| | ..-. .+.|+-.+..+++.+..+.|++||.+.+..++..+++|... |.++.+.....
T Consensus 146 Sp~~p~ys~~~w-----~-s~as----qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 146 SPHRPFYSTSSW-----R-SAAS----QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS-VNSIDFNRFKY 214 (1081)
T ss_pred CCCcceeeeecc-----c-ccCc----eeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee-eehHHHhhhhh
Confidence 632222111111 1 1112 38999889999999888899999999887688888886555 78876655556
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE---------ECCCcEEEEeCCCCCcc
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA---------SQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1199 ~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasg---------s~DG~I~IWDl~~~~~~ 1269 (1354)
..+.+.+.||+|++||............+- ..+|..-.+-|-+.|.++.-- -.+..-..|+..++..+
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt---~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVTT---NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceeccc---cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 788999999999999987543221111111 245555555554222222211 11222334555555578
Q ss_pred EEEEecCCCCeEEEEEcCC--------CC--EEEEEeCCCcEEEEeCC
Q 000681 1270 YLTIDAHRGSLSALAVHRH--------AP--IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1270 v~~l~~h~~~VtsLafspd--------g~--~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+.+|.+|.+.|...-|-.. .+ .|+|-|.|..+++|-++
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 9999999988877666432 12 78999999999999865
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-06 Score=89.59 Aligned_cols=232 Identities=9% Similarity=-0.011 Sum_probs=148.4
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeee
Q 000681 1099 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1178 (1354)
Q Consensus 1099 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~ 1178 (1354)
...+|+.||..|...+|...+.++...+. ..|...|.- .-.+.-....+..++.|.++++.+++.+. ...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c------d~snn~v~~---~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~ 152 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC------DVSNNDVTL---VKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKF 152 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee------cccccchhh---hhhhcccccceeeccCCcceeEEEEecCc-ccc
Confidence 56789999999999999997644443332 222222211 00111134457778889999999887655 222
Q ss_pred eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000681 1179 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1257 (1354)
Q Consensus 1179 ~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~-~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~ 1257 (1354)
...... -.+.++ ..+++++++++.+....|-.|.+..... ..++... .....-.+..|+.. ...+|+++.||+
T Consensus 153 ~~h~~~-~~~ns~-~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--~t~D~gF~~S~s~~--~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 153 AVHNQN-LTQNSL-HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--PTSDHGFYNSFSEN--DLQFAVVFQDGT 226 (344)
T ss_pred eeeccc-cceeee-EEcCCCceEEEecCCCcceEEEeCCccceeeeeEec--ccCCCceeeeeccC--cceEEEEecCCc
Confidence 222111 125666 6789999999999999999999875432 3332211 12244567788887 899999999999
Q ss_pred EEEEeCCCCCccEEEE----ecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeC-CCceEEEEeccCCccccccCCCeE
Q 000681 1258 IQFLDIRNHKDAYLTI----DAHRGSLSALAVHRHAP--IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN 1330 (1354)
Q Consensus 1258 I~IWDl~~~~~~v~~l----~~h~~~VtsLafspdg~--~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~ 1330 (1354)
+.|||+|....+..+. ..|.+.+..+.|++.|. +|...-.-+.+.+-|+ ++...+.+......+..+....|.
T Consensus 227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if 306 (344)
T KOG4532|consen 227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF 306 (344)
T ss_pred EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc
Confidence 9999999875444333 35889999999999776 4444444578899994 455555544312222222334577
Q ss_pred EEEEecCCCEEEEEEC
Q 000681 1331 CLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1331 sLafspdg~~Lasgs~ 1346 (1354)
...|+.++.-..+.+.
T Consensus 307 gt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE 322 (344)
T ss_pred cccccCCCcccccccc
Confidence 7788777755554443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=95.15 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=154.5
Q ss_pred CceEEEeeCCCcEEEEeCCCCCCeEEEEE------cC--CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCC--CeE
Q 000681 1021 SFDLAVSKLNNPIACWDTRFEKGTKTALL------QP--FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK--GIS 1090 (1354)
Q Consensus 1021 ~~~L~~s~~d~~I~iWd~~~~~~I~sL~f------sp--dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~--~It 1090 (1354)
+..+++...++.+..+|..+++.+....+ +| .+..+++++.+|.|..||.++|+.+..+....+... ...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence 34566666777777788776633322211 11 345677778899999999999998887765441100 001
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCC-----CcccceeEEEEecCCCeEEEEECCCeE
Q 000681 1091 KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP-----GVRCSNVVVDWQQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1091 sL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~-----~V~si~~~v~~sp~~~~Lla~g~Dg~I 1165 (1354)
+... .+..++.+..+|.+..+|..+ ++..-........+... .+.+. ... .++.+++++.+|.+
T Consensus 185 sp~~----~~~~v~~~~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~---p~~--~~~~vy~~~~~g~l 253 (377)
T TIGR03300 185 SPVI----ADGGVLVGFAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGD---PVV--DGGQVYAVSYQGRV 253 (377)
T ss_pred CCEE----ECCEEEEECCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCc---cEE--ECCEEEEEEcCCEE
Confidence 1222 234778888889999999866 33221100000000000 01110 111 36788888899999
Q ss_pred EEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000681 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1166 ~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~ 1245 (1354)
+.||.++++ .+....... .... . ..++.+++++.||.|..+|..+++..... ....+ ....+... .
T Consensus 254 ~a~d~~tG~-~~W~~~~~~---~~~p-~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~-~~~~~--~~~ssp~i--~-- 319 (377)
T TIGR03300 254 AALDLRSGR-VLWKRDASS---YQGP-A--VDDNRLYVTDADGVVVALDRRSGSELWKN-DELKY--RQLTAPAV--V-- 319 (377)
T ss_pred EEEECCCCc-EEEeeccCC---ccCc-e--EeCCEEEEECCCCeEEEEECCCCcEEEcc-ccccC--CccccCEE--E--
Confidence 999999988 665554211 1222 1 24677888889999999999988743322 11111 11222222 2
Q ss_pred CCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEE
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVF 1304 (1354)
Q Consensus 1246 g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt-sLafspdg~~Lasgs~Dg~I~Iw 1304 (1354)
+..+++++.+|.|+++|..++ +.+..+..+...+. +..+. + ..|+.++.||.|..|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 568999999999999999988 67777776654332 22333 3 347788889988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00011 Score=86.40 Aligned_cols=263 Identities=10% Similarity=0.117 Sum_probs=154.8
Q ss_pred CcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCceEEEeeCCCCC----CC
Q 000681 1031 NPIACWDTRFE---------KGTKTALLQPFSPIVVAADE----------NERIKIWNYEEDTLLNSFDNHDFP----DK 1087 (1354)
Q Consensus 1031 ~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~----------Dg~I~IWd~~tg~~l~~~~~h~~~----~~ 1087 (1354)
+.|.+.|..+. .....+ ++||++.|+++.. ++.|.+||..+++.+..+.....| +.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 68888888765 445555 9999998777654 789999999999999888753311 12
Q ss_pred CeEEEEEEeeCCCCEEEEEe-C-CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeE
Q 000681 1088 GISKLCLVNELDVSLLLVAS-C-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs-~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I 1165 (1354)
.-..+.+ ++||++|++.. + +..|-|.|+.+ + +.+..+. ..+ | ......+ +...+ +-+.||..
T Consensus 106 ~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~--~--kvv~ei~-vp~------~-~~vy~t~-e~~~~-~~~~Dg~~ 169 (352)
T TIGR02658 106 YPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEG--K--AFVRMMD-VPD------C-YHIFPTA-NDTFF-MHCRDGSL 169 (352)
T ss_pred ccceEEE--CCCCCEEEEecCCCCCEEEEEECCC--C--cEEEEEe-CCC------C-cEEEEec-CCccE-EEeecCce
Confidence 2335566 78999999876 4 68999999966 2 2221111 111 0 0111221 11111 22333333
Q ss_pred EEEECCCCc-eeeeeecC-CC-CCCeEEE-EEEcCCCCEEEEEECCCeEEEEECCCCCe----eeEeecCC----CCCCC
Q 000681 1166 MLWDLEKEQ-QMVNPIPS-SS-DCSISAL-TASQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPH----TQQVE 1233 (1354)
Q Consensus 1166 ~VWDl~t~~-~~v~~i~~-~~-~~~Vtsl-~~~s~~g~~L~sgs~DGsVrIwDlr~~~~----~~~~~~~~----~~h~~ 1233 (1354)
....+.... ......+. +. ..++..= .+...+|+.+.+.+. |+|.+.|+..... ........ .-..+
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 332222211 01111110 00 0000000 123447877777776 9999999754321 11111000 00223
Q ss_pred CeEEEEEecCCCCCEEEEEE----------CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCcE
Q 000681 1234 RVVGISFQPGLDPAKIVSAS----------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGS-AKQLI 1301 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs----------~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs-~Dg~I 1301 (1354)
.+.-++++++ ++.+++.. ..+.|.++|..+. +.+..+.. ...+..++++||++ .|++.+ .++.|
T Consensus 249 g~q~ia~~~d--g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 249 GWQQVAYHRA--RDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred cceeEEEcCC--CCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 4455999999 77766642 1247999999988 57777664 44789999999999 777665 57889
Q ss_pred EEEe-CCCceEEEEe
Q 000681 1302 KVFS-LEGEQLGTIR 1315 (1354)
Q Consensus 1302 ~Iwd-~~g~~l~~i~ 1315 (1354)
.++| .+++.+.++.
T Consensus 325 sViD~~t~k~i~~i~ 339 (352)
T TIGR02658 325 YIFDAETGKELSSVN 339 (352)
T ss_pred EEEECcCCeEEeeec
Confidence 9999 4577777773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-07 Score=98.88 Aligned_cols=193 Identities=15% Similarity=0.212 Sum_probs=126.2
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCCeeeEeec
Q 000681 1152 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTR 1226 (1354)
Q Consensus 1152 ~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs-----~DGsVrIwDlr~~~~~~~~~~ 1226 (1354)
.+..+++++.||.+.+++.+........+...+.. --+.... ..++.+.++. .-+..+.|+++..+......+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-cccccee-ecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 46788899999999999987633122222221111 1111111 1233343332 223466777775543332222
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 000681 1227 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1227 ~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg-~~Lasgs~Dg~I~Iwd 1305 (1354)
.. ..|.+++-+|. ....+++|+.||.+.+||.|+...++..+..|+.+|+.+.|||.. ..|.+++.||.+.-||
T Consensus 178 ~~----~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 AL----DAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cc----ccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 33 34999999998 678889999999999999998877888889999999999999964 4899999999999999
Q ss_pred CCCceEEEEecc---CCcc---------------ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1306 LEGEQLGTIRYH---HPSF---------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1306 ~~g~~l~~i~~~---h~~f---------------l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.++..+. +.+. +... +....-.|++ |.-.|..|++|++-+.|++++
T Consensus 253 as~~~l~-i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 253 ASTTFLS-ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCCceEE-ecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 7766554 2220 1111 1112223333 444678999999888888864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-05 Score=99.09 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=129.8
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EeCCCe--EEEE
Q 000681 1042 KGTKTALLQPFSPIVVAADE-NE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGN--IRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~-Dg--~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~t-gs~DG~--IrIW 1115 (1354)
..+.+..|+|||+.|+..+. ++ .|.+||..+++... +.... +......| ++||+.|+. .+.+|. |.+|
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~---g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP---GINGAPRF--SPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC---CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEE
Confidence 45678899999998887653 33 58888988776432 22212 23346677 789997764 566775 5566
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-D--g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
|+.+ +..+ .+..+...... ..|+|++..++..++ + ..|.++|+.+++ .. .+...... ....
T Consensus 292 dl~t--g~~~------~lt~~~~~~~~----p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~-~Lt~~g~~-~~~~- 355 (448)
T PRK04792 292 DIAT--KALT------RITRHRAIDTE----PSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VS-RLTFEGEQ-NLGG- 355 (448)
T ss_pred ECCC--CCeE------ECccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EEecCCCC-CcCe-
Confidence 6644 3222 23333333344 789999998877653 3 357777887776 32 23211111 2334
Q ss_pred EEcCCCCEEEEEEC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc--EEEEeCCCC
Q 000681 1193 ASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD--IQFLDIRNH 1266 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~-DG--sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~-DG~--I~IWDl~~~ 1266 (1354)
.++++|+.++..+. ++ .|.++|+.+++. . .+... .......|+|+ |+.|+..+. +|. +.+++...
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~-~lt~~----~~d~~ps~spd--G~~I~~~~~~~g~~~l~~~~~~G- 426 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAM-Q-VLTST----RLDESPSVAPN--GTMVIYSTTYQGKQVLAAVSIDG- 426 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCe-E-EccCC----CCCCCceECCC--CCEEEEEEecCCceEEEEEECCC-
Confidence 56889988877655 34 456678877652 2 22111 11224579999 777666554 343 67777743
Q ss_pred CccEEEEecCCCCeEEEEEcCC
Q 000681 1267 KDAYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1267 ~~~v~~l~~h~~~VtsLafspd 1288 (1354)
.....+..+.+.+...+|+|.
T Consensus 427 -~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 -RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -CceEECcCCCCCcCCCccCCC
Confidence 355566666667788888873
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.3e-05 Score=98.39 Aligned_cols=305 Identities=17% Similarity=0.195 Sum_probs=188.3
Q ss_pred EEEEeCC----CCCCeEEEEEcCCCCEEEEEECCCcEEEE----ECCCC--ceEEEeeCCCCCCCCeEEEEEEeeCCCCE
Q 000681 1033 IACWDTR----FEKGTKTALLQPFSPIVVAADENERIKIW----NYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSL 1102 (1354)
Q Consensus 1033 I~iWd~~----~~~~I~sL~fspdg~~Latgs~Dg~I~IW----d~~tg--~~l~~~~~h~~~~~~ItsL~f~~s~d~~~ 1102 (1354)
+.-|+.. .+..|.++.|-++...++.+..+|.|.+. +..+. +.+..+ . .+|.+++| +||+.+
T Consensus 63 l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d---~GI~a~~W--SPD~El 134 (928)
T PF04762_consen 63 LASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---D---SGILAASW--SPDEEL 134 (928)
T ss_pred EEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---c---CcEEEEEE--CCCcCE
Confidence 3445543 34789999999999999999999999999 44433 222222 2 68999999 899999
Q ss_pred EEEEeCCCeEEEEEcc----C-------CCCcceEE--------eeeecc---------cCCC------CC--cccceeE
Q 000681 1103 LLVASCNGNIRIWKDY----D-------QKDKQKLV--------TAFSSI---------QGHK------PG--VRCSNVV 1146 (1354)
Q Consensus 1103 L~tgs~DG~IrIWdl~----~-------~~~~~~lv--------s~~~~l---------~~h~------~~--V~si~~~ 1146 (1354)
|+..+.+|++.+-.-. . .-+..+.+ +.|+.- .+.. .. ..+....
T Consensus 135 la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ 214 (928)
T PF04762_consen 135 LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVR 214 (928)
T ss_pred EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceE
Confidence 9999999988764321 0 00111111 011100 0000 00 1123345
Q ss_pred EEEecCCCeEEEEEC---C---CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC---CCeEEEEECCC
Q 000681 1147 VDWQQQSGYLYASGE---V---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRT 1217 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~---D---g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~---DGsVrIwDlr~ 1217 (1354)
++|-.||.++++.+- . +.||||+-+ +. +.........--.++ .|.|.|+++++.-. ...|.+|....
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l-~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGAL-SWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCc-cCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 899999999998853 2 579999976 33 333332323323455 78899999988765 34577777543
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEecC-CCCeEEEEEcCCCC-EEEE
Q 000681 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH-RGSLSALAVHRHAP-IIAS 1294 (1354)
Q Consensus 1218 ~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h-~~~VtsLafspdg~-~Las 1294 (1354)
-+.-.... ........|..+.|+++ +..|+....|. |.+|-..+.. -..+.+... ...+..+.|||... .|..
T Consensus 291 LrhgeF~l-~~~~~~~~v~~l~Wn~d--s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 291 LRHGEFTL-RFDPEEEKVIELAWNSD--SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred cEeeeEec-CCCCCCceeeEEEECCC--CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 32111111 12233468999999999 99999987665 9999987652 112223322 23455699999655 5666
Q ss_pred EeCCCcEEEEeCC-----C--------ceEEEEeccCCc----c--------c----cccCCCeEEEEEecCCCEEEEEE
Q 000681 1295 GSAKQLIKVFSLE-----G--------EQLGTIRYHHPS----F--------M----AQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1295 gs~Dg~I~Iwd~~-----g--------~~l~~i~~~h~~----f--------l----~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
.+.+|.+..++.. + ..+..+.+ ..- | | -.-.++|.+++|++++..+|+-.
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~ 445 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT 445 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE
Confidence 6666777665521 1 01222222 100 0 0 02347899999999998899999
Q ss_pred CCCeEEEcC
Q 000681 1346 ADACVSIHS 1354 (1354)
Q Consensus 1346 ~Dg~V~IWd 1354 (1354)
.||.|.+|.
T Consensus 446 ~d~~l~~~~ 454 (928)
T PF04762_consen 446 SDGSLSIYE 454 (928)
T ss_pred CCCCEEEEE
Confidence 999998873
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=103.82 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=155.3
Q ss_pred EEEEEeeC-CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeec--ccCCCCC-----cccceeEEEEecCCCeEEEEE-C
Q 000681 1091 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS--IQGHKPG-----VRCSNVVVDWQQQSGYLYASG-E 1161 (1354)
Q Consensus 1091 sL~f~~s~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~--l~~h~~~-----V~si~~~v~~sp~~~~Lla~g-~ 1161 (1354)
.+++ +. ++.++++-+.++.|++||... ..... +.. ..+.... .......++++++++.|+++. .
T Consensus 572 gvav--d~~~g~lyVaDs~n~rI~v~d~~G---~~i~~--ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 572 KLAI--DLLNNRLFISDSNHNRIVVTDLDG---NFIVQ--IGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred eEEE--ECCCCeEEEEECCCCeEEEEeCCC---CEEEE--EccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 5666 34 456667767788999999743 22111 110 0000000 000112378888888887775 5
Q ss_pred CCeEEEEECCCCceeeeeecCCC----------------CCCeEEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPSSS----------------DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCS 1224 (1354)
Q Consensus 1162 Dg~I~VWDl~t~~~~v~~i~~~~----------------~~~Vtsl~~~s~-~g~~L~sgs~DGsVrIwDlr~~~~~~~~ 1224 (1354)
.+.|+++|..++. +.++.+.. -..-..+ .+++ ++.++++.+.++.|++||..++......
T Consensus 645 n~~Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CceEEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 6789999998765 44442210 0113567 4455 6777888888999999999876521110
Q ss_pred ec----CCCC------CCCCeEEEEEecCCCCC-EEEEEECCCcEEEEeCCCCCccEEE------------EecC-----
Q 000681 1225 TR----PHTQ------QVERVVGISFQPGLDPA-KIVSASQAGDIQFLDIRNHKDAYLT------------IDAH----- 1276 (1354)
Q Consensus 1225 ~~----~~~~------h~~~I~sv~fsp~~~g~-~Lasgs~DG~I~IWDl~~~~~~v~~------------l~~h----- 1276 (1354)
-. ...+ .-.....++++|+ +. ++++-+.++.|++||+.++...+.. +..+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCC--CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 00 0001 1134567999998 66 5566667799999999876311110 0000
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCC--ccc-----cccCCCeEEEEEecCCCEEEEEEC
Q 000681 1277 ---RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP--SFM-----AQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1277 ---~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~--~fl-----~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
-....+++++++|.++++-+.++.|++||.++..+.++.+ .. ++. .........++++++|+++++-+.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 1124688999999999999999999999987766665543 21 111 112246789999999998888888
Q ss_pred CCeEEEcC
Q 000681 1347 DACVSIHS 1354 (1354)
Q Consensus 1347 Dg~V~IWd 1354 (1354)
++.|++||
T Consensus 879 Nn~Irvid 886 (1057)
T PLN02919 879 NSLIRYLD 886 (1057)
T ss_pred CCEEEEEE
Confidence 99999986
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=104.49 Aligned_cols=289 Identities=15% Similarity=0.279 Sum_probs=182.2
Q ss_pred cEEEEeCCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------CceEEEeeCCCCCCCCeEEEEEEeeCCCCEE
Q 000681 1032 PIACWDTRFE-KGTKTALLQPFSPIVVAADENERIKIWNYEE-------DTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1103 (1354)
Q Consensus 1032 ~I~iWd~~~~-~~I~sL~fspdg~~Latgs~Dg~I~IWd~~t-------g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L 1103 (1354)
+|++-++... ..|..+.--.+++-+++++.|.+|++|.+.. ..+..+++.|+ .+|.++.|. .+.+++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---k~i~~igfL--~~lr~i 799 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---KPIHDIGFL--ADLRSI 799 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---Ccccceeee--ecccee
Confidence 4455444332 5677776666778899999999999998763 24667788899 899999995 455666
Q ss_pred EEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec-CCCeEEEE-ECCCeEEEEECCCCceeeeeec
Q 000681 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP 1181 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp-~~~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~ 1181 (1354)
++ .||.|.+||..-..--.++. +..-.+....|.+ ... +...++++ +...+|+++|.+... -+..++
T Consensus 800 ~S--cD~giHlWDPFigr~Laq~~--dapk~~a~~~ikc------l~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~k 868 (1034)
T KOG4190|consen 800 AS--CDGGIHLWDPFIGRLLAQME--DAPKEGAGGNIKC------LENVDRHILIAGCSAESTVKLFDARSCE-WTCELK 868 (1034)
T ss_pred ee--ccCcceeecccccchhHhhh--cCcccCCCceeEe------cccCcchheeeeccchhhheeeeccccc-ceeeEE
Confidence 55 48999999975411111111 0001111122222 111 33444555 467899999999877 555554
Q ss_pred CC----CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000681 1182 SS----SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1257 (1354)
Q Consensus 1182 ~~----~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~ 1257 (1354)
.. ....+.++ ...+.|+.+++|-.+|.|.+.|.|+++ ++..|+... .....++- |. ...++....|.+
T Consensus 869 Vcna~~Pna~~R~i-aVa~~GN~lAa~LSnGci~~LDaR~G~-vINswrpme---cdllqlaa-ps--dq~L~~saldHs 940 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAI-AVADKGNKLAAALSNGCIAILDARNGK-VINSWRPME---CDLLQLAA-PS--DQALAQSALDHS 940 (1034)
T ss_pred eccCCCCchheeEE-EeccCcchhhHHhcCCcEEEEecCCCc-eeccCCccc---chhhhhcC-ch--hHHHHhhcccce
Confidence 22 22347777 667889999999999999999999998 666665543 33444442 44 567777777888
Q ss_pred EEE-EeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-----eEEEEeccCCccccccCCCeEE
Q 000681 1258 IQF-LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE-----QLGTIRYHHPSFMAQKIGSVNC 1331 (1354)
Q Consensus 1258 I~I-WDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~-----~l~~i~~~h~~fl~~~~~~V~s 1331 (1354)
+.+ |-.-.+ ......+....+.. -...-|+-+++......+.||.-.++ .+..++. .+ -.+..++
T Consensus 941 laVnWhaldg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~-d~-----f~G~lTa 1011 (1034)
T KOG4190|consen 941 LAVNWHALDG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP-DE-----FPGTLTA 1011 (1034)
T ss_pred eEeeehhcCC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc-cc-----cCCccce
Confidence 888 876544 22222221111111 11224667788777778889873322 2233333 21 2367889
Q ss_pred EEEecCCCEEEEEECCCeEEEc
Q 000681 1332 LTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1332 Lafspdg~~Lasgs~Dg~V~IW 1353 (1354)
++--|-..-+..|+..|.|.+.
T Consensus 1012 la~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 1012 LAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred eeeccccchhhccCCCCceeec
Confidence 9999988888889889988763
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-05 Score=85.80 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=157.0
Q ss_pred cEEEEeCCCC-CCe----EEEEEcC-----CCCEEEEEECCCcEEEEECCCCce-EEEeeCCCCCCCCeEEEEEEeeCCC
Q 000681 1032 PIACWDTRFE-KGT----KTALLQP-----FSPIVVAADENERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDV 1100 (1354)
Q Consensus 1032 ~I~iWd~~~~-~~I----~sL~fsp-----dg~~Latgs~Dg~I~IWd~~tg~~-l~~~~~h~~~~~~ItsL~f~~s~d~ 1100 (1354)
.+-+|+...+ ++| +.|.|.| ...+||.|+..|...+|...+.+. ++....+. ..|+-+.= +-...
T Consensus 53 sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r-~cd~~ 128 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKR-YCDLK 128 (344)
T ss_pred eeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccc---cchhhhhh-hcccc
Confidence 3455666544 111 3456666 345899999999999999986543 33344444 22221111 01233
Q ss_pred CEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCC--cccceeEEEEecCCCeEEEEECCCeEEEEECCCCce-ee
Q 000681 1101 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MV 1177 (1354)
Q Consensus 1101 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~--V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~-~v 1177 (1354)
.-+..++.|.++++.++.....+.. -|... +.+ +.+++++..+++.|+...|..|.+..+.. .+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~---------~h~~~~~~ns----~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFA---------VHNQNLTQNS----LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE 195 (344)
T ss_pred cceeeccCCcceeEEEEecCcccce---------eeccccceee----eEEcCCCceEEEecCCCcceEEEeCCccceee
Confidence 4567788899999999865222222 12222 444 78899999999999999999998876542 33
Q ss_pred eeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000681 1178 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256 (1354)
Q Consensus 1178 ~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~-~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG 1256 (1354)
+.........-.+. .++.....+++++.||++.|||+|....+.. .......|++.+..+.|++.+.-++|...-.-+
T Consensus 196 ~~~~a~t~D~gF~~-S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs 274 (344)
T KOG4532|consen 196 NIYEAPTSDHGFYN-SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS 274 (344)
T ss_pred eeEecccCCCceee-eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc
Confidence 32222222223444 4566788999999999999999996543322 222334589999999999872234555555567
Q ss_pred cEEEEeCCCCCccEEEEe-------cCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1257 DIQFLDIRNHKDAYLTID-------AHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1257 ~I~IWDl~~~~~~v~~l~-------~h~-~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
.+.+.|+|+.+ ....+. .|. ..|..-.|+.++.-+.+.+.+ .+.=|++.
T Consensus 275 ~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 275 RVHVVDTRNYV-NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred eEEEEEcccCc-eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 89999999884 333222 222 236666676666555444443 23444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-05 Score=101.33 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=155.7
Q ss_pred CeEEEEEcCC-CCEEEEEECCCcEEEEECCCCceEEEeeCCCCC-----------CCCeEEEEEEeeCCCCEEEEEe-CC
Q 000681 1043 GTKTALLQPF-SPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-----------DKGISKLCLVNELDVSLLLVAS-CN 1109 (1354)
Q Consensus 1043 ~I~sL~fspd-g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~-----------~~~ItsL~f~~s~d~~~L~tgs-~D 1109 (1354)
.+..+++++. +.++++-..++.|++||.. ++.+..+.+.... -.....+++ .++++.|+++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCC
Confidence 3467889875 4566666678889999976 5555444321100 013467888 46677666654 45
Q ss_pred CeEEEEEccCCCCcceEEeeee----cccCCCC---CcccceeEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeec
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFS----SIQGHKP---GVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP 1181 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~----~l~~h~~---~V~si~~~v~~sp~~~~Lla~-g~Dg~I~VWDl~t~~~~v~~i~ 1181 (1354)
+.|+++|..+ +....+.... ...+... ........++++++++.++++ +.++.|++||..++. . ..+.
T Consensus 646 ~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v-~~~~ 721 (1057)
T PLN02919 646 HALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-T-RVFS 721 (1057)
T ss_pred ceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-E-EEEe
Confidence 7799998755 2221110000 0000000 000111237888866766666 578899999998765 2 2222
Q ss_pred CC--------------CCCCeEEEEEEcCCCC-EEEEEECCCeEEEEECCCCCeeeEee---------cCCCC-------
Q 000681 1182 SS--------------SDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCST---------RPHTQ------- 1230 (1354)
Q Consensus 1182 ~~--------------~~~~Vtsl~~~s~~g~-~L~sgs~DGsVrIwDlr~~~~~~~~~---------~~~~~------- 1230 (1354)
+. .-.....| .++++++ ++++.+.++.|++||+.++......- ..+..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 11 00124567 5667776 56677778999999998765221110 00000
Q ss_pred -CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC--------------CCCeEEEEEcCCCCEEEEE
Q 000681 1231 -QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------------RGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1231 -h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h--------------~~~VtsLafspdg~~Lasg 1295 (1354)
.-.....++++++ |.++++-+.++.|++||..++ .+.++.+. -.....++++++|+++++-
T Consensus 801 ~~l~~P~Gvavd~d--G~LYVADs~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKD--GQIYVADSYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCC--CcEEEEECCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0123458899998 889999999999999999876 33333321 1246789999999999999
Q ss_pred eCCCcEEEEeCCCc
Q 000681 1296 SAKQLIKVFSLEGE 1309 (1354)
Q Consensus 1296 s~Dg~I~Iwd~~g~ 1309 (1354)
+.++.|++||++..
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999997543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=89.16 Aligned_cols=259 Identities=14% Similarity=0.122 Sum_probs=153.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeec
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
+..+++++.+|.+..+|.++|+.+.+..... ....+... .+..+++++.+|.+..+|..+ ++..-...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~~~--- 187 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESD--GAVKWTVN--- 187 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccC--CCEeeeec---
Confidence 4567778889999999999999988776543 11112222 345677788899999999876 43221100
Q ss_pred ccCCCCC--cccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC---Ce---EEEEEEcC--CCCEEE
Q 000681 1133 IQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC---SI---SALTASQV--HGGQLA 1202 (1354)
Q Consensus 1133 l~~h~~~--V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~---~V---tsl~~~s~--~g~~L~ 1202 (1354)
....... ..+.. +. .++.+++++.+|.+..+|..+++ .+......... .+ ..+ ..+| .+..++
T Consensus 188 ~~~~~~~~~~~~sP--~v---~~~~v~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~-~~sP~v~~~~vy 260 (394)
T PRK11138 188 LDVPSLTLRGESAP--AT---AFGGAIVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDV-DTTPVVVGGVVY 260 (394)
T ss_pred CCCCcccccCCCCC--EE---ECCEEEEEcCCCEEEEEEccCCh-hhheeccccCCCccchhccccc-CCCcEEECCEEE
Confidence 0000000 00100 11 24567888889999999999888 55544321100 00 000 0011 255777
Q ss_pred EEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC-CCCeE
Q 000681 1203 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSLS 1281 (1354)
Q Consensus 1203 sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h-~~~Vt 1281 (1354)
+++.+|.+..+|..+++...+. .. .....+.. . +..++.++.+|.+..+|..++ +.+.....- .....
T Consensus 261 ~~~~~g~l~ald~~tG~~~W~~--~~----~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVWKR--EY----GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLLT 329 (394)
T ss_pred EEEcCCeEEEEECCCCCEEEee--cC----CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCccc
Confidence 7888999999999998744332 11 11112222 2 567888889999999999888 344332211 11122
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeE-EEEEecCCCEEEEEECCCeEEEc
Q 000681 1282 ALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVN-CLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1282 sLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~-sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
+..+ .+..|+.++.||.|.+.| .+|+.+...+. .. ..+. ...+ .+..|..++.||.|..+
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~-------~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DS-------SGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CC-------CcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 2222 245777889999999999 57887777654 21 1121 2222 24578888899998765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-05 Score=89.71 Aligned_cols=226 Identities=17% Similarity=0.162 Sum_probs=143.1
Q ss_pred eCCCCEEEEEeCCCeEEEEEccCCCCcceEEe--eeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc
Q 000681 1097 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT--AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1174 (1354)
Q Consensus 1097 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs--~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~ 1174 (1354)
+.||..++-. .-|.|.+||..+..- .++-. +...-......+.-..+.-.|+...+.+++--+-|...|.+...+-
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 3567666553 457799999866211 11110 0000000111111111111244444444444445667776655444
Q ss_pred eeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000681 1175 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1175 ~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG-sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
.++..+...|.-. ....+++-++.|..|| .+-|||.++++ ..+....+ +.|.++..+++ |++++.+.
T Consensus 353 ----~iqv~~~~~VrY~-r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l----g~I~av~vs~d--GK~~vvaN 420 (668)
T COG4946 353 ----SIQVGKKGGVRYR-RIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL----GNIEAVKVSPD--GKKVVVAN 420 (668)
T ss_pred ----eEEcCCCCceEEE-EEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc----cceEEEEEcCC--CcEEEEEc
Confidence 2333333336665 4556777899999999 89999999887 33333233 78999999999 99999999
Q ss_pred CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCceEEEEeccCCccccccCCCe
Q 000681 1254 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK----QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1254 ~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~D----g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
....|.+.|+.++. ....-+...+-|+.++|||+++++|-+--+ +.|++||+.|..+..+.. .. +.=
T Consensus 421 dr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t-------a~D 491 (668)
T COG4946 421 DRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT-------AYD 491 (668)
T ss_pred CceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc-------ccc
Confidence 99999999999983 333334456789999999999999987554 468999998877766654 22 233
Q ss_pred EEEEEecCCCEEEEEE
Q 000681 1330 NCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1330 ~sLafspdg~~Lasgs 1345 (1354)
.+-+|.|++++|.--+
T Consensus 492 fsPaFD~d~ryLYfLs 507 (668)
T COG4946 492 FSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCcccCCCCcEEEEEe
Confidence 4567888988765443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-05 Score=93.64 Aligned_cols=190 Identities=15% Similarity=0.056 Sum_probs=115.0
Q ss_pred EEEecCCCeEE---EEECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC----eEEEEECC
Q 000681 1147 VDWQQQSGYLY---ASGEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG----SVRLYDVR 1216 (1354)
Q Consensus 1147 v~~sp~~~~Ll---a~g~D--g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG----sVrIwDlr 1216 (1354)
-.|+|++..++ ++..+ ..|.+.|+.+++ ... +...... .... .++|+|+.|+..+. +| .+..||+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~-lt~~~g~-~~~p-~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKK-ILALQGN-QLMP-TFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceE-eecCCCC-ccce-EECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 79999987532 34333 458888998776 222 2221122 3344 67899988876553 23 34447766
Q ss_pred CC--CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEE--eCCCCCccEEEEecCCCCeEEEEEcCCCCE
Q 000681 1217 TP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFL--DIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1291 (1354)
Q Consensus 1217 ~~--~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IW--Dl~~~~~~v~~l~~h~~~VtsLafspdg~~ 1291 (1354)
.+ ......... +.......+|+|+ |+.|+..+ .+|...+| ++.........+..+...+....|+|||+.
T Consensus 266 ~g~~g~~~~lt~~---~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLNE---AFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeecC---CCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 53 112222211 1133467899999 88777665 46655555 443221234445545566788999999998
Q ss_pred EEEEeCC---CcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-C--CeEEEc
Q 000681 1292 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-D--ACVSIH 1353 (1354)
Q Consensus 1292 Lasgs~D---g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~-D--g~V~IW 1353 (1354)
|+..+.+ ..|.+||..+.....+.. .. ..+....|+|||+.|+..+. + +.|.+|
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 8876543 468999987666665543 21 34677899999998876544 2 345544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-05 Score=92.90 Aligned_cols=321 Identities=11% Similarity=0.131 Sum_probs=200.2
Q ss_pred eEEEeeCCCcEEEEeCCCC----------CCeEEEEEcC---CC-CEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCC
Q 000681 1023 DLAVSKLNNPIACWDTRFE----------KGTKTALLQP---FS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG 1088 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~----------~~I~sL~fsp---dg-~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ 1088 (1354)
.+++++..|.|.+||...+ +++..++|-+ +. ..|++-.....|.+||..+|+.+....... ..
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~---~i 157 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH---EI 157 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC---cc
Confidence 4677778889999999875 6788899865 33 356666668899999999999988776555 45
Q ss_pred eEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCC------------Ccc----cc-----eeEE
Q 000681 1089 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP------------GVR----CS-----NVVV 1147 (1354)
Q Consensus 1089 ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~------------~V~----si-----~~~v 1147 (1354)
..++.+.+ -|.+.+...+..|.+-+-+.-...........++.-..|.. .++ +. +..+
T Consensus 158 Ls~f~~DP-fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 158 LSCFRVDP-FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeeeeeCC-CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 66677742 46667777777777777665321111000011111122211 000 00 1235
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-CeEEEEEEcCCCCEEEEEECCCeEEEEECCCC--------
Q 000681 1148 DWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTP-------- 1218 (1354)
Q Consensus 1148 ~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~-~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~-------- 1218 (1354)
+|+|.-+.++.......+.|+|++-+. ++..+....+. ++..+ .-.+....+.++-.||.+.+|-.+..
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~-~l~vvpier~~akfv~v-lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~ 314 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYEC-CLAVVPIERGGAKFVDV-LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN 314 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhc-eeEEEEeccCCcceeEe-ccCCCcceEEEEecCCeEEEEEeeccCccccccc
Confidence 678877777777777889999999888 77776644332 23333 22334456777777777777755431
Q ss_pred --------Ce--eeEeec--------------------------------------------------------------
Q 000681 1219 --------DM--LVCSTR-------------------------------------------------------------- 1226 (1354)
Q Consensus 1219 --------~~--~~~~~~-------------------------------------------------------------- 1226 (1354)
.+ .++.++
T Consensus 315 ~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 315 ASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred hhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 00 000000
Q ss_pred -------CCCCCCCCeEEEEEecC----------------CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEE
Q 000681 1227 -------PHTQQVERVVGISFQPG----------------LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1227 -------~~~~h~~~I~sv~fsp~----------------~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsL 1283 (1354)
...+|....++...+|- +.-..++.|+..|+|.++|+.++ .....+..|.+.|.++
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~Vkgl 473 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGL 473 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeee
Confidence 00123334444444332 01135789999999999999988 6778888999999999
Q ss_pred EEcCCCCEEEEEe---------CCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1284 AVHRHAPIIASGS---------AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1284 afspdg~~Lasgs---------~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.|-....++-.+. .-+.+.|-|+....-..|++ . .+....+|..+..+..|+||+..-.|.-+.+||
T Consensus 474 eW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~-l---~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 474 EWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG-L---QKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred eeccceeEEEeeeccccccccceeeeEEEEEccccccccccc-C---CCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 9976655443221 12334555543333333433 1 234568999999999999999999998888886
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.9e-05 Score=87.11 Aligned_cols=288 Identities=15% Similarity=0.187 Sum_probs=176.6
Q ss_pred EEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCE
Q 000681 1033 IACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL 1102 (1354)
Q Consensus 1033 I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~ 1102 (1354)
...|+...+ -.=+-+.|||-|.||++-- ...|.+|--++-..++.|. |. .|.-+.| +|..+|
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~H-k~GI~lWGG~~f~r~~RF~-Hp----~Vq~idf--SP~EkY 263 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFH-KQGIALWGGESFDRIQRFY-HP----GVQFIDF--SPNEKY 263 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEe-ccceeeecCccHHHHHhcc-CC----Cceeeec--CCccce
Confidence 566887764 2246789999999999987 4458899766656666654 33 6888899 789999
Q ss_pred EEEEeC-----------CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECC
Q 000681 1103 LLVASC-----------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1171 (1354)
Q Consensus 1103 L~tgs~-----------DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~ 1171 (1354)
|+|=+. ...++|||+.+ |. +..++..+. ....++. .+.||.++.+++--+. ..|.||+..
T Consensus 264 LVT~s~~p~~~~~~d~e~~~l~IWDI~t--G~--lkrsF~~~~-~~~~~WP---~frWS~DdKy~Arm~~-~sisIyEtp 334 (698)
T KOG2314|consen 264 LVTYSPEPIIVEEDDNEGQQLIIWDIAT--GL--LKRSFPVIK-SPYLKWP---IFRWSHDDKYFARMTG-NSISIYETP 334 (698)
T ss_pred EEEecCCccccCcccCCCceEEEEEccc--cc--hhcceeccC-CCccccc---eEEeccCCceeEEecc-ceEEEEecC
Confidence 999653 25799999987 32 222222222 2223333 3889988888877665 569999877
Q ss_pred CCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000681 1172 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1246 (1354)
Q Consensus 1172 t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-----DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g 1246 (1354)
+-. .+ ..+.-.-..|... .++|.++.|+--.. -..+.+-.+-+++ .++....+ .-.=..+.|+.+ |
T Consensus 335 sf~-ll-d~Kslki~gIr~F-swsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlf---nVsDckLhWQk~--g 405 (698)
T KOG2314|consen 335 SFM-LL-DKKSLKISGIRDF-SWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLF---NVSDCKLHWQKS--G 405 (698)
T ss_pred cee-ee-cccccCCccccCc-ccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccce---eeeccEEEeccC--C
Confidence 643 22 2222122236666 56677666664322 1234555554444 22222111 122234567766 8
Q ss_pred CEEEEEE----------CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCC--ceE
Q 000681 1247 AKIVSAS----------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLEG--EQL 1311 (1354)
Q Consensus 1247 ~~Lasgs----------~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~---Dg~I~Iwd~~g--~~l 1311 (1354)
.+|+.-- .=..+.|+.++....++..+. -...|...+|-|+|..+++-+. ..++.+|..+. ...
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 8877532 122467777776655555554 3567999999999997766543 35788888542 211
Q ss_pred EEEeccCCccccccCCCeEEEEEecCCCEEEEEEC---CCeEEEcC
Q 000681 1312 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA---DACVSIHS 1354 (1354)
Q Consensus 1312 ~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~---Dg~V~IWd 1354 (1354)
.-++. . .....+.+.|+|.|++++.++. .|.+.+||
T Consensus 485 ~lVk~-~------dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 485 SLVKE-L------DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hhhhh-h------cccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 11111 1 1145688999999999887754 56677664
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=91.28 Aligned_cols=186 Identities=16% Similarity=0.247 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-----CCCeEEEEECCCC
Q 000681 1099 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EVSSIMLWDLEKE 1173 (1354)
Q Consensus 1099 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-----~Dg~I~VWDl~t~ 1173 (1354)
.++-+++++.||.+.+++.+. ...+.. +.-..|... +..++...++.+.+++ .-+..+.|+++..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~~--~i~~~~~~~-----as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK---DLALMS--RIPSIHSGS-----ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cCCceEecCCCceEEEEechH---HHhhhh--hcccccccc-----cccceeecccEEecCCcceEeeccceeeeccccc
Confidence 567889999999999998743 111100 000111111 1122222334444432 1234666776644
Q ss_pred ceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000681 1174 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1174 ~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
+ ....-...-+ .|++++..+...+.+++|+.||.+-+||.|+...+... +..|+..|..+.|+|. ++..|++++
T Consensus 170 ~-t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~---l~ahk~~i~eV~FHpk-~p~~Lft~s 243 (319)
T KOG4714|consen 170 K-TLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL---LKAHKAEIWEVHFHPK-NPEHLFTCS 243 (319)
T ss_pred c-cccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH---HHHhhhhhhheeccCC-CchheeEec
Confidence 3 1111111112 38888656556778899999999999999988644443 3467799999999998 899999999
Q ss_pred CCCcEEEEeCCCCCccEEEEec----C----------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1254 QAGDIQFLDIRNHKDAYLTIDA----H----------------------RGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1254 ~DG~I~IWDl~~~~~~v~~l~~----h----------------------~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.||.+.-||..+. .+. +.. | ...|+++. -.|..|++|+.-+.|++++
T Consensus 244 edGslw~wdas~~--~l~-i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 244 EDGSLWHWDASTT--FLS-ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCCcEEEEcCCCc--eEE-ecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEec
Confidence 9999999998742 211 110 0 11233333 3577888888888888775
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-06 Score=103.47 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=173.5
Q ss_pred EEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-----
Q 000681 1035 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----- 1109 (1354)
Q Consensus 1035 iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D----- 1109 (1354)
+|-....++|.++.|.....++..|+..|.+.-+-....+....|..|.. ..|..+.- -..-+.+.+..
T Consensus 48 ~~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~--~~v~~~~~----~~~~i~~ls~~alr~~ 121 (1118)
T KOG1275|consen 48 ISVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSI--DGVRRIEP----TESGIFTLSKTALRAT 121 (1118)
T ss_pred eeeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEecc--chhhhhhh----hhhhheeeeHHHhhhh
Confidence 35555556889999998888888888877776555444444555555441 12222221 11111222111
Q ss_pred --CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000681 1110 --GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1110 --G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~ 1187 (1354)
+-+-++|... . ....-... +. -+...++.||--..+..+|+++.+ ..+......+.
T Consensus 122 ~r~gl~~~~~~~-------------~-s~~~M~~~----~~--~~~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~- 179 (1118)
T KOG1275|consen 122 TRQGLPVFDFTC-------------P-SMTKMASS----LH--MGPSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASG- 179 (1118)
T ss_pred hccCceeecccC-------------C-CHHHHHHH----hc--cCCcceeecchhhheeeeecccce-eeeeeeccCCc-
Confidence 1122222211 0 00000011 10 145677788877789999999988 55555443333
Q ss_pred eEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---------CCcE
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---------AGDI 1258 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~---------DG~I 1258 (1354)
|+=| ..+++.+.+|...|+|.+-|.++.+ .++.+ ..|.+.|..+..+ |+.|++++. |..|
T Consensus 180 v~im---R~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~---~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fv 248 (1118)
T KOG1275|consen 180 VTIM---RYNNRNLFCGDTRGTVFLRDPNSFE-TIHTF---DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFV 248 (1118)
T ss_pred eEEE---EecCcEEEeecccceEEeecCCcCc-eeeee---eccccceeeeecc----CCeEEEeecccccccccccchh
Confidence 5444 4578999999999999999999887 44444 4566899988875 778888875 4568
Q ss_pred EEEeCCCCCccEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe---CCCceEEEEeccCCccccccCCCeEEEEE
Q 000681 1259 QFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTF 1334 (1354)
Q Consensus 1259 ~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~-~Lasgs~Dg~I~Iwd---~~g~~l~~i~~~h~~fl~~~~~~V~sLaf 1334 (1354)
+|||+|+. ..+.-+.-+.++ .-+.|+|.-. .+|.++..|...+-| +.......... +. ..+.+..+.+
T Consensus 249 kVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p-----~~s~i~~fDi 320 (1118)
T KOG1275|consen 249 KVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NP-----NGSGISAFDI 320 (1118)
T ss_pred hhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE-cc-----CCCcceeEEe
Confidence 99999987 355444444444 4567888643 777788889999988 33333333322 32 2355999999
Q ss_pred ecCCCEEEEEECCCeEEEcC
Q 000681 1335 HPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1335 spdg~~Lasgs~Dg~V~IWd 1354 (1354)
+++|..||.|..+|.|.+|.
T Consensus 321 Ssn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCceEEEecccCcEeeec
Confidence 99999999999999999994
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=96.65 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=190.6
Q ss_pred CcchhhHHHHhhchhhhh--HHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCch-hhhhHHHHHHHHHhhcC-hhh
Q 000681 460 PEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTP-ELRQILVFIWTKILALD-KSC 535 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~~rl--ral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~-elr~~~~FIwa~i~~~~-~~~ 535 (1354)
-+-.|+..++|.|+...+ .|+--|+++..-||-+++..|+.|+.+-.+.+|+.+.. -+..-++..++.+|+.- |+-
T Consensus 151 agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P 230 (514)
T KOG0166|consen 151 AGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSP 230 (514)
T ss_pred CCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCC
Confidence 488999999999987655 67788899999999999999999999999999997654 22233578888899884 555
Q ss_pred hhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000681 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1354)
Q Consensus 536 Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1354)
..+-++ .........|...| ++..+.+|-.|+.+-++-.+.-..-++.++...+.++|. .+.+-++.-++
T Consensus 231 ~~~~v~-~iLp~L~~ll~~~D--~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-------~~~~~v~~PaL 300 (514)
T KOG0166|consen 231 PFDVVA-PILPALLRLLHSTD--EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-------HSSPKVVTPAL 300 (514)
T ss_pred cHHHHH-HHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-------CCCcccccHHH
Confidence 544454 34556666777766 488899999999999888887777799999999999999 67888899999
Q ss_pred HHHHHhhccchHHhHhhcccCchhhHhhhhc-CCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 000681 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISII 694 (1354)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 694 (1354)
-++|....+.++-.+..++.++...|..++. .+..-.|+|++..++.+... ....-+.-++..++
T Consensus 301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG--------------~~~qiqaVida~l~ 366 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG--------------NQEQIQAVIDANLI 366 (514)
T ss_pred hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC--------------CHHHHHHHHHcccH
Confidence 9999999998888888899999989999997 66666999999999999821 01111233566777
Q ss_pred HHHhhhccCCChhhhHHHHHHHHHHH
Q 000681 695 RSLLTVVSDGSPLVRAEVAVALARFA 720 (1354)
Q Consensus 695 ~~ll~~~~D~sp~VR~e~~~~l~~~v 720 (1354)
-.|+.++..+--..|+|++++++...
T Consensus 367 p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 367 PVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhhc
Confidence 78888887777889999999998654
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-05 Score=106.39 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=182.7
Q ss_pred cchhhHHHHhhch--hhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhh
Q 000681 461 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1354)
Q Consensus 461 ~~lP~vLq~LlS~--~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~ 538 (1354)
|-+|.+.++|.++ ..+..|+..++..-.-..-.+...++-|.+|++++||.++..+.|.-++.++.-|....+++|.-
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 5688999988874 34455665555554444444455567799999999999988889988999999999976677655
Q ss_pred hhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcch----------------hHHH-------------------
Q 000681 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG----------------QEAC------------------- 583 (1354)
Q Consensus 539 l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~g----------------q~~~------------------- 583 (1354)
..+.|.+..++++|.+.+ ++.|..++..|+.+..+-... +..+
T Consensus 526 V~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 557799999999998765 477777777777765332111 1111
Q ss_pred --HhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHh
Q 000681 584 --IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 661 (1354)
Q Consensus 584 --~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 661 (1354)
...+.++.+.++|+ .+++..+.-++-+|+.++.+..+.....+..++...++.+|..+..+||+++..||+
T Consensus 604 g~~~~ggL~~Lv~LL~-------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 604 GSAANDALRTLIQLLS-------SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhhccccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 12456778888888 788999999999999999988776666788888889999999999999999999999
Q ss_pred hccccCCCCCCCCCCCCCCCChHHHH-HHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHhhh
Q 000681 662 TLLDIGFDSCRDGVEGDEECDDDEKI-RAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 724 (1354)
Q Consensus 662 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~~~ 724 (1354)
.+.... .+.+.. -.+...+..|+.++.+.+..|+.+++.+|..++..-+
T Consensus 677 nL~~~~--------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 677 ALSRSI--------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHhCC--------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 998321 112222 2566677889999999999999999999998876543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=93.09 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred CcchhhHHHHhhchh--hhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHh-hccCchhhhhHHHHHHHHHhhcChhhh
Q 000681 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKL-LQTTTPELRQILVFIWTKILALDKSCQ 536 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~--~rlral~ll~~fld~g~wAv~lal~~gifpyvlkl-L~s~~~elr~~~~FIwa~i~~~~~~~Q 536 (1354)
+..++.+.++|.++. .|.-|+..|+++=+-+. + ..-.+|.+..+ ++++..+.|..++..+..++.-...-+
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc
Confidence 456666666666653 33344445555322110 0 01234555544 455666677666666666543322111
Q ss_pred hhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000681 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1354)
Q Consensus 537 ~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l 616 (1354)
.. ....+...+.+.+ ++.|..++..|+.+- ...++..++..|+ |+++.||.|+++
T Consensus 127 ~~-----a~~~l~~~~~D~~--~~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~-------d~~~~VR~~A~~ 181 (280)
T PRK09687 127 PK-----IVEQSQITAFDKS--TNVRFAVAFALSVIN-----------DEAAIPLLINLLK-------DPNGDVRNWAAF 181 (280)
T ss_pred hH-----HHHHHHHHhhCCC--HHHHHHHHHHHhccC-----------CHHHHHHHHHHhc-------CCCHHHHHHHHH
Confidence 11 1222333444443 466666666665442 2345666666776 666777777777
Q ss_pred HHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhc
Q 000681 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1354)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1354)
+||++-.+.+ .+...|..+|.|..++||.+++.+||.+
T Consensus 182 aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 7776621122 2233566667777777777777777664
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-05 Score=93.73 Aligned_cols=242 Identities=12% Similarity=0.115 Sum_probs=169.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeC----------CCCEEEEEeCCCeEE
Q 000681 1044 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL----------DVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~----------d~~~L~tgs~DG~Ir 1113 (1354)
-.++.|+|.| ++|.|+ ...|.|-|..+-+.+..+.-|. ..|+.+.|.+.+ ..-+|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4567788877 777777 6789999999999999999998 899999996532 123567777789999
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEe---cCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1189 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~s---p~~-~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vt 1189 (1354)
+||... +.... .+..|..++.. ++|- ++. ..|++-.....|.+|+..+++ .+......+.- ..
T Consensus 93 l~d~~~--~s~~~-----~l~~~~~~~qd----l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~i-Ls 159 (1062)
T KOG1912|consen 93 LVDFVL--ASVIN-----WLSHSNDSVQD----LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEI-LS 159 (1062)
T ss_pred EEEehh--hhhhh-----hhcCCCcchhh----eeeeeccCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcc-ee
Confidence 999866 32222 36778888877 5553 344 345555788899999999999 77666654443 66
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCC---eeeEeecCCCCCCC----------------C---------eEEEEEe
Q 000681 1190 ALTASQVHGGQLAAGFVDGSVRLYDVRTPD---MLVCSTRPHTQQVE----------------R---------VVGISFQ 1241 (1354)
Q Consensus 1190 sl~~~s~~g~~L~sgs~DGsVrIwDlr~~~---~~~~~~~~~~~h~~----------------~---------I~sv~fs 1241 (1354)
|+.+.+-+.+.+..-+..|.|-+-+.-... ...+.++....|.. . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 676667777888887788887777653211 11111111111111 0 1135678
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~--~Lasgs~Dg~I~Iwd~ 1306 (1354)
|. -+.++-......+.++|++-. .++..+.-..+.+.-+.+-|+++ .|.++-.||.+.||-.
T Consensus 240 p~--~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 240 PH--WRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hh--hhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 87 555555666788999999877 68888777777777788888765 8999999999999973
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0004 Score=80.66 Aligned_cols=175 Identities=14% Similarity=0.173 Sum_probs=123.2
Q ss_pred EcC-CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-eEEEEEccCCCCcceE
Q 000681 1049 LQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKL 1126 (1354)
Q Consensus 1049 fsp-dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG-~IrIWdl~~~~~~~~l 1126 (1354)
|++ +|++++..+ .|...|.+...+-.++. ++. +.|.-..+ ..+++-++.|..|| .+-|+|... ++.+.
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~---~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~--~e~kr 396 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQV--GKK---GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDG--GEVKR 396 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEEc--CCC---CceEEEEE--ccCCcceEEeccCCceEEEEecCC--ceEEE
Confidence 443 677888887 78888877665544332 333 56777777 56777899999999 899999866 33222
Q ss_pred EeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC
Q 000681 1127 VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1206 (1354)
Q Consensus 1127 vs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~ 1206 (1354)
+....+.|.. +..+++|..++++.+...|.+.|+.++. ++.+......-|+.+ .+++++++++-+.-
T Consensus 397 ------~e~~lg~I~a----v~vs~dGK~~vvaNdr~el~vididngn--v~~idkS~~~lItdf-~~~~nsr~iAYafP 463 (668)
T COG4946 397 ------IEKDLGNIEA----VKVSPDGKKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDF-DWHPNSRWIAYAFP 463 (668)
T ss_pred ------eeCCccceEE----EEEcCCCcEEEEEcCceEEEEEEecCCC--eeEecccccceeEEE-EEcCCceeEEEecC
Confidence 3344455555 8888999999999888999999999998 555554445569999 77899999998888
Q ss_pred CC----eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000681 1207 DG----SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1207 DG----sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
+| .|++||+..++ ..... +.. +.=.+-+|.|+ +++|.--+
T Consensus 464 ~gy~tq~Iklydm~~~K-iy~vT-T~t---a~DfsPaFD~d--~ryLYfLs 507 (668)
T COG4946 464 EGYYTQSIKLYDMDGGK-IYDVT-TPT---AYDFSPAFDPD--GRYLYFLS 507 (668)
T ss_pred cceeeeeEEEEecCCCe-EEEec-CCc---ccccCcccCCC--CcEEEEEe
Confidence 77 58999999887 33332 222 22334567777 66665443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=92.59 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=121.0
Q ss_pred cCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhh-cCCCCCchHHHHHHHHHHHHHhcCCcc
Q 000681 500 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF-LDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1354)
Q Consensus 500 ~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~-L~~~~~~~~~r~~~af~La~l~~~~~~ 578 (1354)
.-+|+.+.+++++..++.|..++.++..|=.-+ ..|.. .+...... +++++ ++.|+.++-.|+.++.....
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~~-----a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQDN-----VFNILNNLALEDKS--ACVRASAINATGHRCKKNPL 124 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchHH-----HHHHHHHHHhcCCC--HHHHHHHHHHHhcccccccc
Confidence 346788999999998999999999998764322 11211 12233333 45555 69999999999999754432
Q ss_pred hhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHH
Q 000681 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVF 658 (1354)
Q Consensus 579 gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~ 658 (1354)
....+.+.+...+. |++++||..++.+||++-.. .+...|+.+|+|+.+.||.++++
T Consensus 125 -----~~~~a~~~l~~~~~-------D~~~~VR~~a~~aLg~~~~~-----------~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 125 -----YSPKIVEQSQITAF-------DKSTNVRFAVAFALSVINDE-----------AAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred -----cchHHHHHHHHHhh-------CCCHHHHHHHHHHHhccCCH-----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 13345666777777 78999999999999976421 24457999999999999999999
Q ss_pred HHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHH
Q 000681 659 SLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1354)
Q Consensus 659 aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~ 719 (1354)
+||.+- .. .......|+..+.|..+.||.+++.+|+++
T Consensus 182 aLg~~~-~~----------------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNK-YD----------------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCC-CC----------------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 999882 10 012234567777999999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.4e-05 Score=104.06 Aligned_cols=240 Identities=22% Similarity=0.199 Sum_probs=181.9
Q ss_pred CcchhhHHHHhhchh--hhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcC-----
Q 000681 460 PEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALD----- 532 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~--~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~----- 532 (1354)
.|-+|.+.++|.++. .+..|.-.|++.-...+-.+....+.|++|.++.+|.+...+.|..++..+..++...
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I 566 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI 566 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH
Confidence 478999999998854 4446666766666544444444456799999999999887788877777777775321
Q ss_pred -----------hhhhhh---------------------hhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000681 533 -----------KSCQVD---------------------LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1354)
Q Consensus 533 -----------~~~Q~~---------------------l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq 580 (1354)
+..+.. ....++....+..|...+ ++.|..+|-+|+.++.+.+.-.
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHH
Confidence 111110 112467777788887654 6899999999999998877766
Q ss_pred HHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHh-hcccCchhhHhhhhcCCChHHHHHHHHH
Q 000681 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~-~~~~~~~~~l~~ll~D~sP~VRaa~v~a 659 (1354)
..-+..+++.-++.+|. ....++|..++.+|+.+..+..+.+.. .++.++...|+.+|++.+..|+..++.+
T Consensus 645 ~avv~agaIpPLV~LLs-------s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLT-------NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHh-------cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 66678899999999999 778899999999999999766666544 4888898899999999999999999999
Q ss_pred HhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHhh
Q 000681 660 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1354)
Q Consensus 660 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~~ 723 (1354)
|+.++... +....+. +...+..|..++.++++.+|+.++.++..+...+
T Consensus 718 LanLl~~~--------------e~~~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 718 LANLLSDP--------------EVAAEAL-AEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHcCc--------------hHHHHHH-hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 99999432 1111122 2344677888999999999999999998776553
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=91.54 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE---EeCCCeEEEE
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLV---ASCNGNIRIW 1115 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~----~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~t---gs~DG~IrIW 1115 (1354)
.+..+..++.+++||++..+....++++.... .+..+.... .-+++.|+ .+...... +++...+.+|
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~--~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFI--REDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----Ccceeeee--eccceEEEEeecCCceeeeee
Confidence 44556788899999999988887787776443 333333322 33455553 22333333 3455666777
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEc
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s 1195 (1354)
.... +..+. +-||...+.. ++|+|++..|+++..|..|||-...... .+..+--+|..-|..++..
T Consensus 138 s~~~--~~~~~------~lGhvSml~d----VavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~- 203 (390)
T KOG3914|consen 138 SADS--GRCEP------ILGHVSMLLD----VAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLT- 203 (390)
T ss_pred cccc--cCcch------hhhhhhhhhe----eeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeec-
Confidence 6643 33333 4688888888 9999999999999999999998877666 6666665445559888443
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCee
Q 000681 1196 VHGGQLAAGFVDGSVRLYDVRTPDML 1221 (1354)
Q Consensus 1196 ~~g~~L~sgs~DGsVrIwDlr~~~~~ 1221 (1354)
++..|++|++|++|++||+++++.+
T Consensus 204 -~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 204 -DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -cCceeeecCCCCcEEEEecccCCcc
Confidence 4667999999999999999999844
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.001 Score=75.35 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=140.4
Q ss_pred EEEEEeeC-CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1091 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1091 sL~f~~s~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
++.| .+ ++.++++-...+.|..|+..+ +..... ...+ ..+ +.+...++.++++...+ +.++|
T Consensus 4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~----~~~~----~~G----~~~~~~~g~l~v~~~~~-~~~~d 66 (246)
T PF08450_consen 4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDT--GEVEVI----DLPG----PNG----MAFDRPDGRLYVADSGG-IAVVD 66 (246)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTT--TEEEEE----ESSS----EEE----EEEECTTSEEEEEETTC-EEEEE
T ss_pred ceEE--ECCCCEEEEEEcCCCEEEEEECCC--CeEEEE----ecCC----Cce----EEEEccCCEEEEEEcCc-eEEEe
Confidence 4566 44 666666666789999999865 332221 1111 233 56664557777777655 45559
Q ss_pred CCCCceee--eeec-CC-CCCCeEEEEEEcCCCCEEEEEECC--------CeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000681 1170 LEKEQQMV--NPIP-SS-SDCSISALTASQVHGGQLAAGFVD--------GSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1170 l~t~~~~v--~~i~-~~-~~~~Vtsl~~~s~~g~~L~sgs~D--------GsVrIwDlr~~~~~~~~~~~~~~h~~~I~s 1237 (1354)
..+++ .. .... .. .....+.+ ...++|++.++.... |.|..++.. ++ ........ ...+.
T Consensus 67 ~~~g~-~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~----~~pNG 138 (246)
T PF08450_consen 67 PDTGK-VTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGL----GFPNG 138 (246)
T ss_dssp TTTTE-EEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEE----SSEEE
T ss_pred cCCCc-EEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCc----ccccc
Confidence 88875 32 2221 11 33447788 677889977776644 567777777 33 33223222 56789
Q ss_pred EEEecCCCCCEEE-EEECCCcEEEEeCCCCCccE---EEE---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q 000681 1238 ISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAY---LTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1310 (1354)
Q Consensus 1238 v~fsp~~~g~~La-sgs~DG~I~IWDl~~~~~~v---~~l---~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~ 1310 (1354)
++|+|+ ++.|+ +-+..+.|..+++......+ ..+ ....+..-.+++..+|++.++....+.|.+++.+|+.
T Consensus 139 i~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 999999 77665 66677889999987442211 122 2222347889999999988888888999999999999
Q ss_pred EEEEeccCCccccccCCCeEEEEEe-cCCCEEEEEE
Q 000681 1311 LGTIRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAGS 1345 (1354)
Q Consensus 1311 l~~i~~~h~~fl~~~~~~V~sLafs-pdg~~Lasgs 1345 (1354)
+..+.. . ...+++++|. ++...|...+
T Consensus 217 ~~~i~~-p-------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 LREIEL-P-------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE--S-------SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcC-C-------CCCEEEEEEECCCCCEEEEEe
Confidence 998876 2 2579999994 6666555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00075 Score=75.05 Aligned_cols=229 Identities=15% Similarity=0.170 Sum_probs=127.0
Q ss_pred eCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000681 1097 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1176 (1354)
Q Consensus 1097 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~ 1176 (1354)
+.+|++|++. .|..|.|-...+. -..++...+..++..+.=+. ++|+|++..|+.+...|+|++||+....
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Dd--f~si~~kcqVpkD~~PQWRk----l~WSpD~tlLa~a~S~G~i~vfdl~g~~-- 76 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDD--FSSIIGKCQVPKDPNPQWRK----LAWSPDCTLLAYAESTGTIRVFDLMGSE-- 76 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCC--chheeEEEecCCCCCchheE----EEECCCCcEEEEEcCCCeEEEEecccce--
Confidence 4566666665 4556666554331 11121111222333333333 9999999999999999999999998754
Q ss_pred eeeecCC------CCCCeEEEEEEcCC-----CCEEEEEECCCeEEEEECCCC--C--eeeEeecCCCCCCCCeEEEEEe
Q 000681 1177 VNPIPSS------SDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTP--D--MLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1177 v~~i~~~------~~~~Vtsl~~~s~~-----g~~L~sgs~DGsVrIwDlr~~--~--~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
+..++.. -...|.++.+.... ...|++-..+|.++-|-+..+ + .....+.-...+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 3344432 22346666554443 346777788888888876422 1 1222232222346789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEE--EEEeCCCc------EEEEeCCCceEEE
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII--ASGSAKQL------IKVFSLEGEQLGT 1313 (1354)
Q Consensus 1242 p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~L--asgs~Dg~------I~Iwd~~g~~l~~ 1313 (1354)
|. .+.|++|+.... +.+ . -.+....+++-.+-.+.++. ++...|+. -.+|.+-.-.+..
T Consensus 157 p~--h~LLlVgG~~~~------~~~--~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PK--HRLLLVGGCEQN------QDG--M---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CC--CCEEEEeccCCC------CCc--c---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 98 777777764322 000 0 00112223332222222211 12222221 1233322111111
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1314 i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.+ ++....|..|..+|||..||+...+|.|.+|+
T Consensus 224 ~~-------~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 224 RQ-------GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred cc-------ccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11 12347899999999999999999999999995
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.8e-06 Score=91.92 Aligned_cols=166 Identities=17% Similarity=0.259 Sum_probs=119.4
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCC----eeeEeecCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQ 1230 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~----~~~~~~~~~~~ 1230 (1354)
+-++.|.+..|-+-|++++. ...+. +.+.|.++ .+...++++..|+.+|.|..+|+|.+. .....+ -
T Consensus 226 yhfs~G~sqqv~L~nvetg~--~qsf~--sksDVfAl-Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----y 296 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH--QQSFQ--SKSDVFAL-QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----Y 296 (425)
T ss_pred eeecccccceeEEEEeeccc--ccccc--cchhHHHH-HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----E
Confidence 33667778889999999886 34444 23447887 445568899999999999999999762 122222 3
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc---EEEEecCCCCeEEE--EEcCCCCEEEEEeCCCcEEEEe
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~---v~~l~~h~~~VtsL--afspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
|.+.|+++..-.. .+.+|++.+.+|+|++||.|.. ++ +.++.+|...-.-+ .+++....+++++.|...+||.
T Consensus 297 h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhcc-ccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 5688998887662 3889999999999999999976 35 88888886543333 3456667888999999999999
Q ss_pred C-CCceEEEEeccCCccccccCCCeEEEEEe
Q 000681 1306 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1335 (1354)
Q Consensus 1306 ~-~g~~l~~i~~~h~~fl~~~~~~V~sLafs 1335 (1354)
+ .|..+.++..... .....+.+++|.
T Consensus 375 l~~ghLl~tipf~~s----~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYS----ASEVDIPSVAFD 401 (425)
T ss_pred cccCceeeccCCCCc----cccccccceehh
Confidence 5 4788887765111 112346667764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0016 Score=72.69 Aligned_cols=224 Identities=16% Similarity=0.153 Sum_probs=134.5
Q ss_pred CCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCc
Q 000681 1061 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1140 (1354)
Q Consensus 1061 ~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1140 (1354)
++|+|..||..+|+.+........ ......... .+++.+++++.++.|..||..+ ++..-. ..+ ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~t--G~~~W~---~~~---~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPG-IGGPVATAV---PDGGRVYVASGDGNLYALDAKT--GKVLWR---FDL---PGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSS-CSSEEETEE---EETTEEEEEETTSEEEEEETTT--SEEEEE---EEC---SSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCCC-CCCccceEE---EeCCEEEEEcCCCEEEEEECCC--CCEEEE---eec---cccc
Confidence 378999999999999988865220 122322222 3677888889999999999876 433222 111 1222
Q ss_pred ccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCC-CCC-eEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000681 1141 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSS-DCS-ISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217 (1354)
Q Consensus 1141 ~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i-~~~~-~~~-Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~ 1217 (1354)
.... ...++.+++++.++.|+.+|..+++ .+... .... ... .... .....++.++++..+|.|..+|.++
T Consensus 69 ~~~~-----~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 69 SGAP-----VVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GSGE-----EEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCSEEEEEETTT
T ss_pred ccee-----eecccccccccceeeeEecccCCcc-eeeeecccccccccccccc-CceEecCEEEEEeccCcEEEEecCC
Confidence 2211 1257788888888999999999999 77663 3221 110 1111 1122378899999999999999999
Q ss_pred CCeeeEeecCCCCC-CCC------eEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1218 PDMLVCSTRPHTQQ-VER------VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1218 ~~~~~~~~~~~~~h-~~~------I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
++...... ..... ... +..-....+ + .++.++.+|.+..+|+.++ +.+.... ...+..+ ...++.
T Consensus 142 G~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~g~~~~~d~~tg-~~~w~~~--~~~~~~~-~~~~~~ 213 (238)
T PF13360_consen 142 GKLLWKYP-VGEPRGSSPISSFSDINGSPVISD--G-RVYVSSGDGRVVAVDLATG-EKLWSKP--ISGIYSL-PSVDGG 213 (238)
T ss_dssp TEEEEEEE-SSTT-SS--EEEETTEEEEEECCT--T-EEEEECCTSSEEEEETTTT-EEEEEEC--SS-ECEC-EECCCT
T ss_pred CcEEEEee-cCCCCCCcceeeecccccceEEEC--C-EEEEEcCCCeEEEEECCCC-CEEEEec--CCCccCC-ceeeCC
Confidence 98543332 21111 111 122222223 4 7777777886444499998 3443322 2233331 346677
Q ss_pred EEEEEeCCCcEEEEeC-CCceE
Q 000681 1291 IIASGSAKQLIKVFSL-EGEQL 1311 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~-~g~~l 1311 (1354)
.|+.++.++.|..||. +|+.+
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTEEEEEETTTTEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEE
Confidence 8887779999999994 55544
|
... |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=78.42 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=106.7
Q ss_pred hhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q 000681 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1354)
Q Consensus 539 l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~L 618 (1354)
.++.++++.++.+|.+.+ +..|.-++.+|+.++.+.+.......+.++++.++.+|+ ++++.+|..++.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-------SEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 567789999999998776 589999999999999998888888888899999999999 78999999999999
Q ss_pred HHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 619 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+.|..+.+......++.++...|..++++.+..||..++.+|+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888888888889999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0021 Score=78.08 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=149.1
Q ss_pred eEEEeeCCCcEEEEeCCCCCCeEEEEE------cC--CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCC--CCeEEE
Q 000681 1023 DLAVSKLNNPIACWDTRFEKGTKTALL------QP--FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD--KGISKL 1092 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~~~I~sL~f------sp--dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~--~~ItsL 1092 (1354)
.+++...++.+..+|.++++.+..... +| .+..++++..+|.+..+|.++|+.+..+....+.. ....+-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP 201 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP 201 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence 455666667777788777633222211 12 24567777889999999999999988876542100 000111
Q ss_pred EEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccC-C----CCCcccceeEEEEecCCCeEEEEECCCeEEE
Q 000681 1093 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG-H----KPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167 (1354)
Q Consensus 1093 ~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~-h----~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~V 1167 (1354)
.. .+..++.++.+|.+..+|..+ ++..-........+ + ...+... ... .++.+++++.+|.+..
T Consensus 202 ~v----~~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~s---P~v--~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 202 AT----AFGGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTT---PVV--VGGVVYALAYNGNLVA 270 (394)
T ss_pred EE----ECCEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCC---cEE--ECCEEEEEEcCCeEEE
Confidence 11 234577778889888888766 32211100000000 0 0001111 111 3678888888999999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000681 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1247 (1354)
Q Consensus 1168 WDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~ 1247 (1354)
+|..+++ .+...... . ...+ . ..+..++.++.+|.+..+|..+++...+.- ... + ....+..+. +.
T Consensus 271 ld~~tG~-~~W~~~~~--~-~~~~-~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~~-~-~~~~sp~v~----~g 336 (394)
T PRK11138 271 LDLRSGQ-IVWKREYG--S-VNDF-A--VDGGRIYLVDQNDRVYALDTRGGVELWSQS-DLL-H-RLLTAPVLY----NG 336 (394)
T ss_pred EECCCCC-EEEeecCC--C-ccCc-E--EECCEEEEEcCCCeEEEEECCCCcEEEccc-ccC-C-CcccCCEEE----CC
Confidence 9999998 55544322 1 1122 1 146678888899999999999887433221 111 0 112222222 56
Q ss_pred EEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1248 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1248 ~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt-sLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.++.++.||.|.+.|..++ +.+...+.....+. ...+ .+..|+.++.||.|..++
T Consensus 337 ~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 337 YLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 7888999999999999998 56666654333232 2222 234677788899888765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.003 Score=70.35 Aligned_cols=236 Identities=12% Similarity=0.113 Sum_probs=128.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC--ceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc
Q 000681 1047 ALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1047 L~fspdg~~Latgs~Dg~I~IWd~~tg--~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
++.+.+|+.||+-- |..|.|-...+. ..+.+.+..+.+...=..++| ++|+.+|+.+...|+|+++|+.. ...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g--~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMG--SEL 77 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEeccc--cee
Confidence 56778999888776 778888765543 444555544433345678899 89999999999999999999853 111
Q ss_pred eEEeeeeccc-CCCCCcccceeEEEEecC------CCeEEEEECCCeEEEEECCCC--c--eee--eeecCCCCCCeEEE
Q 000681 1125 KLVTAFSSIQ-GHKPGVRCSNVVVDWQQQ------SGYLYASGEVSSIMLWDLEKE--Q--QMV--NPIPSSSDCSISAL 1191 (1354)
Q Consensus 1125 ~lvs~~~~l~-~h~~~V~si~~~v~~sp~------~~~Lla~g~Dg~I~VWDl~t~--~--~~v--~~i~~~~~~~Vtsl 1191 (1354)
-.+..-.... .....|.+ +.|-+. ...|++-..+|.++-|-+..+ + +.. ..+..+....|+++
T Consensus 78 f~I~p~~~~~~d~~~Aiag----l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAG----LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred EEcCcccccCCccccceee----eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 1111111111 11122222 333221 235777778888887775322 1 122 23334444558998
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE-EEEEECCCc------EEEEeCC
Q 000681 1192 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK-IVSASQAGD------IQFLDIR 1264 (1354)
Q Consensus 1192 ~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~-Lasgs~DG~------I~IWDl~ 1264 (1354)
.+.+..+.|++|+.... ..+. .+ .....+++-.+-.+ ...+ .++...|+. -.+|.+-
T Consensus 154 -vy~p~h~LLlVgG~~~~------~~~~--s~------a~~~GLtaWRiL~~-~Pyyk~v~~~~~~~~~~~~~~~~~~~~ 217 (282)
T PF15492_consen 154 -VYHPKHRLLLVGGCEQN------QDGM--SK------ASSCGLTAWRILSD-SPYYKQVTSSEDDITASSKRRGLLRIP 217 (282)
T ss_pred -EEcCCCCEEEEeccCCC------CCcc--cc------ccccCceEEEEcCC-CCcEEEccccCccccccccccceeecc
Confidence 56666677666554322 0000 00 00122222222111 0111 112222211 1233322
Q ss_pred CCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 000681 1265 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1308 (1354)
Q Consensus 1265 ~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g 1308 (1354)
+. ............|..|..||||..||+...+|.|.+|++-.
T Consensus 218 ~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 218 SF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 21 01111112356899999999999999999999999999643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0019 Score=78.87 Aligned_cols=199 Identities=9% Similarity=-0.017 Sum_probs=120.8
Q ss_pred CeEEEEEEeeCCCCE-EEEEeCC---CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---
Q 000681 1088 GISKLCLVNELDVSL-LLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--- 1160 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~-L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g--- 1160 (1354)
.+....| ++||+. ++..+.+ ..|.++|+.+ ++.+.+ ......... ..|+|++..++...
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~~l------t~~~g~~~~----~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYT--GKKEKI------ASSQGMLVV----SDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCC--CcEEEE------ecCCCcEEe----eEECCCCCEEEEEEccC
Confidence 4556677 788874 5544333 4578888755 444443 112222223 67999998887653
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1161 ~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DG--sVrIwDlr~~~~~~~~~~~~~~h~~~I~s 1237 (1354)
.+..|.++|+.++. . ..+..+... ...- .++++|+.++..+. .| .|.+.|+.+++. .+.. ..+. ..
T Consensus 255 g~~~Iy~~dl~~g~-~-~~LT~~~~~-d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~rlt--~~g~----~~ 323 (419)
T PRK04043 255 GQPDIYLYDTNTKT-L-TQITNYPGI-DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-EQVV--FHGK----NN 323 (419)
T ss_pred CCcEEEEEECCCCc-E-EEcccCCCc-cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCe-EeCc--cCCC----cC
Confidence 34578888988776 3 334332221 2233 57899988777664 33 588888887762 2221 1111 12
Q ss_pred EEEecCCCCCEEEEEECC---------CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEe
Q 000681 1238 ISFQPGLDPAKIVSASQA---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFS 1305 (1354)
Q Consensus 1238 v~fsp~~~g~~Lasgs~D---------G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~D---g~I~Iwd 1305 (1354)
..|+|+ |+.|+..+.. ..|.+.|+.++ ....+... +......|+|||+.|+..+.+ ..+.+.+
T Consensus 324 ~~~SPD--G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 324 SSVSTY--KNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred ceECCC--CCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 489999 8877766643 36888888776 33444432 233458899999977665432 2466777
Q ss_pred CCCceEEEEec
Q 000681 1306 LEGEQLGTIRY 1316 (1354)
Q Consensus 1306 ~~g~~l~~i~~ 1316 (1354)
++|.....+..
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 88876666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00016 Score=88.58 Aligned_cols=271 Identities=12% Similarity=0.152 Sum_probs=156.7
Q ss_pred CeEEEEEcCCCCEEEEEE----CCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1043 GTKTALLQPFSPIVVAAD----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs----~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
..+-..|||..+++++++ ..|.|.||- ++|+..+...-. -.+++++| .+..-.|+.|-.-|.+.+|...
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCW--Hpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCW--HPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc----eehhhhcc--ChHHHHHhhccccceeEEEecC
Confidence 344567999999999987 568888884 445543333221 24567888 5677888999899999999985
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCC-Cc-------------e---eeeeec
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-EQ-------------Q---MVNPIP 1181 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t-~~-------------~---~v~~i~ 1181 (1354)
+ .+...+ ...|...+.. +.|+++|+.++++..-|.|.+|.... ++ . +...+.
T Consensus 90 ~--~e~htv-----~~th~a~i~~----l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 90 T--TETHTV-----VETHPAPIQG----LDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred C--ceeeee-----ccCCCCCcee----EEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 5 222222 3557777777 99999999999999999999997651 11 0 000110
Q ss_pred CC--------------CCCCeE------------EE-EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1182 SS--------------SDCSIS------------AL-TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1182 ~~--------------~~~~Vt------------sl-~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
.. .+..+- ++ ..-.++|..|..++.+|+|+-.|-......+.....
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS------- 231 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDS------- 231 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccc-------
Confidence 00 000010 00 112346778999999999988886544322222110
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEeCCC----------------CC----------------ccEEEEecCCCCeEE
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRN----------------HK----------------DAYLTIDAHRGSLSA 1282 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~----------------~~----------------~~v~~l~~h~~~Vts 1282 (1354)
...+-|.+. ..-+++--.+-++.++-... ++ .+...+ .....++|
T Consensus 232 ~vQmLf~~~--~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c 308 (1416)
T KOG3617|consen 232 EVQMLFMGY--CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILC 308 (1416)
T ss_pred hHHHHHhcc--cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEE
Confidence 011112221 11111111111111111000 00 000111 12347999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCC-----C---ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000681 1283 LAVHRHAPIIASGSAKQLIKVFSLE-----G---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1283 Lafspdg~~Lasgs~Dg~I~Iwd~~-----g---~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
++++..+..++.|...|.+.+|--. | ....++.+ .. ...+.|+.+.|.|-...+++.+.
T Consensus 309 ~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~-~~----e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 309 MCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG-KR----ESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC-ch----hhccceEEEEeccccchhhhhhh
Confidence 9999999999999999999999722 2 22333333 11 23478999999997766665544
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.4e-05 Score=74.29 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=106.6
Q ss_pred HHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCC
Q 000681 497 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1354)
Q Consensus 497 al~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~ 576 (1354)
.++.|++++++++|++...+.|.-++..++.++...+.+....++.+++..++.+|.+.+ +..+..++.+|+.|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCc
Confidence 357899999999999888889999999999999998888888899999999999999865 689999999999999999
Q ss_pred cchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000681 577 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1354)
Q Consensus 577 ~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1354)
+.......+.+++..+..+|+ +.+..+|..++.+|+.|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~-------~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLD-------SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHh-------cCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999 778999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0013 Score=81.97 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=133.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCC-eEEEEEEeeCCCCEEEEEeCCC-----eEEEEEccCCC
Q 000681 1048 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG-ISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQK 1121 (1354)
Q Consensus 1048 ~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~-ItsL~f~~s~d~~~L~tgs~DG-----~IrIWdl~~~~ 1121 (1354)
+|++.+..++.|+.+|.|.+.+-. -+.++.|+.+. .. |+.+... ....+|++.+.|+ .|+||++...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccC
Confidence 467788899999999998888743 34557788777 45 4444442 2336777777664 49999997643
Q ss_pred Cc--ceEEeeeecccCCCCC-cccceeEEEEecCCCeEEEEECCCeEEEEE--CCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1122 DK--QKLVTAFSSIQGHKPG-VRCSNVVVDWQQQSGYLYASGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1122 ~~--~~lvs~~~~l~~h~~~-V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD--l~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
+. ++++...+. ..+..+ -.....+++.+.+-..+++|-.+|.|..+. +.+.+.....+......+||++ .+..
T Consensus 104 ~n~sP~c~~~~ri-~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL-~~~~ 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRI-FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL-ALRS 181 (933)
T ss_pred CCCCcceeeeeee-eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee-EEec
Confidence 22 233211111 122211 111222377788888888888999999884 3333212233344445679999 5555
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe-c
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-A 1275 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~-~ 1275 (1354)
++..++-......|.+|.+....+..+ .+..|...+.|..+++. ...+++++. ..+.+||.... .+-.++. +
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~---~ld~~G~~lnCss~~~~--t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK---VLDNNGISLNCSSFSDG--TYQFICAGS-EFLYFYDSDGR-GPCFAFEVG 254 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee---eeccCCccceeeecCCC--CccEEEecC-ceEEEEcCCCc-ceeeeecCC
Confidence 666533334456799999985442232 34456688999999987 444554443 46999998865 3555555 5
Q ss_pred CCCC
Q 000681 1276 HRGS 1279 (1354)
Q Consensus 1276 h~~~ 1279 (1354)
|+..
T Consensus 255 ~kk~ 258 (933)
T KOG2114|consen 255 EKKE 258 (933)
T ss_pred CeEE
Confidence 5543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0053 Score=68.58 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=118.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEee
Q 000681 1050 QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTA 1129 (1354)
Q Consensus 1050 spdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~ 1129 (1354)
.+++.++++++.++.+..||..+|+.+..+......... . . .++..+++++.++.|+.+|..+ ++..-.
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~---~~~~~v~v~~~~~~l~~~d~~t--G~~~W~-- 101 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-V---VDGGRVYVGTSDGSLYALDAKT--GKVLWS-- 101 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-E---EETTEEEEEETTSEEEEEETTT--SCEEEE--
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-e---ecccccccccceeeeEecccCC--cceeee--
Confidence 336677888889999999999999999888864411111 1 2 2566777777888999999766 433211
Q ss_pred eecccC-CCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC---------eEEEEEEcCCCC
Q 000681 1130 FSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS---------ISALTASQVHGG 1199 (1354)
Q Consensus 1130 ~~~l~~-h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~---------Vtsl~~~s~~g~ 1199 (1354)
. .... ....... ...... .++.++++..++.|..+|+++++ .+.......... +.+- ..-.++
T Consensus 102 ~-~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 174 (238)
T PF13360_consen 102 I-YLTSSPPAGVRS-SSSPAV--DGDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGS-PVISDG- 174 (238)
T ss_dssp E-EE-SSCTCSTB---SEEEE--ETTEEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEE-EECCTT-
T ss_pred e-cccccccccccc-ccCceE--ecCEEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCcceeeecccccc-eEEECC-
Confidence 0 0111 1111111 111222 37888888889999999999999 777766533211 1111 122234
Q ss_pred EEEEEECCCe-EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000681 1200 QLAAGFVDGS-VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1200 ~L~sgs~DGs-VrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~ 1267 (1354)
.+..+..+|. +.+ |..+++... .. .. ..+..+ .... +..+++++.++.|..||+++++
T Consensus 175 ~v~~~~~~g~~~~~-d~~tg~~~w-~~-~~----~~~~~~-~~~~--~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLATGEKLW-SK-PI----SGIYSL-PSVD--GGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEECCTSSEEEE-ETTTTEEEE-EE-CS----S-ECEC-EECC--CTEEEEEETTTEEEEEETTTTE
T ss_pred EEEEEcCCCeEEEE-ECCCCCEEE-Ee-cC----CCccCC-ceee--CCEEEEEeCCCEEEEEECCCCC
Confidence 7777777885 555 999998443 22 12 222221 2344 7788888899999999999983
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=80.43 Aligned_cols=269 Identities=13% Similarity=0.143 Sum_probs=160.7
Q ss_pred hhheeecCCCCceEEEeeCCCcEEEEeCCCC---------------------------CCeEEEEEcCCCC--EEEEEEC
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE---------------------------KGTKTALLQPFSP--IVVAADE 1061 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------------------------~~I~sL~fspdg~--~Latgs~ 1061 (1354)
.|....+..-|..+++++..|.+-++..... ..|..+.|-.++. .++..+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 3555566666667777777777777665432 5688888866543 5666677
Q ss_pred CCcEEEEECCCCceEEEee------CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecc-c
Q 000681 1062 NERIKIWNYEEDTLLNSFD------NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSI-Q 1134 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~~~------~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l-~ 1134 (1354)
|.+|++|.+......-.-+ .|.+.++++++.. .+++=.+.. ........+-+.. .
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~-----------------~l~lprls~-hd~iiaa~p~rvyaN 169 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK-----------------ELLLPRLSE-HDEIIAAKPCRVYAN 169 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHH-----------------Hhhcccccc-cceEEEeccceeccc
Confidence 9999999886442111100 1111122222211 011101100 0000000000111 4
Q ss_pred CCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCC----CCeEEEEEEcCCCCEEEEEECCC
Q 000681 1135 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSD----CSISALTASQVHGGQLAAGFVDG 1208 (1354)
Q Consensus 1135 ~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~--~v~~i~~~~~----~~Vtsl~~~s~~g~~L~sgs~DG 1208 (1354)
.|...+.+ +.++.+...+++ .+|=.|.+|+++-... .+..++.|.- ..|++..+.+...+.+.-.+..|
T Consensus 170 aH~yhiNS----iS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 170 AHPYHINS----ISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred cceeEeee----eeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 46656666 777766666665 4667799999875431 2334444321 12566645555677888899999
Q ss_pred eEEEEECCCCCeee---Eee----c-----CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC
Q 000681 1209 SVRLYDVRTPDMLV---CST----R-----PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1276 (1354)
Q Consensus 1209 sVrIwDlr~~~~~~---~~~----~-----~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h 1276 (1354)
.|++-|+|...-+. +.+ . .+.+-...|..+.|+++ |+++++-+. -+|+|||.+..+.++.++.-|
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999999432110 000 0 11122357889999999 999988765 489999999988899999766
Q ss_pred C------------CCe---EEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1277 R------------GSL---SALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1277 ~------------~~V---tsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
. ..| ..+.|+.+...+.+|+..+..-||-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 3 223 3578888888899998877777775
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.013 Score=66.24 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=135.1
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc
Q 000681 1046 TALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1046 sL~fsp-dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+.+ ...+..|+.+...+ +.++|..+ ++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----~~~G~~~--~~~~g~l~v~~~~~-~~~~d~~~--g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----GPNGMAF--DRPDGRLYVADSGG-IAVVDPDT--GKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----SEEEEEE--ECTTSEEEEEETTC-EEEEETTT--TEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----CCceEEE--EccCCEEEEEEcCc-eEEEecCC--CcE
Confidence 577888 55566665578899999998765433 2222 2567777 32335666665554 45558755 333
Q ss_pred eEEeeeecccC-CCCCcccceeEEEEecCCCeEEEEECC--------CeEEEEECCCCceeeeeecCCCCCCeEEEEEEc
Q 000681 1125 KLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEV--------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1125 ~lvs~~~~l~~-h~~~V~si~~~v~~sp~~~~Lla~g~D--------g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s 1195 (1354)
+.+..... .. .....+. +++.++++..++.... |.|..++.. ++ ....... -. ..+.| .++
T Consensus 73 ~~~~~~~~-~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~-~~-~pNGi-~~s 142 (246)
T PF08450_consen 73 TVLADLPD-GGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG-LG-FPNGI-AFS 142 (246)
T ss_dssp EEEEEEET-TCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE-ES-SEEEE-EEE
T ss_pred EEEeeccC-CCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC-cc-cccce-EEC
Confidence 33211100 11 2233344 7788887755554332 568888877 44 2222222 12 26788 677
Q ss_pred CCCCEEE-EEECCCeEEEEECCCCCe-e--eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEE
Q 000681 1196 VHGGQLA-AGFVDGSVRLYDVRTPDM-L--VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1196 ~~g~~L~-sgs~DGsVrIwDlr~~~~-~--~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~ 1271 (1354)
++++.|+ +-+..+.|..||+..... . .+.+....+..+....+++..+ |++.++....+.|.++|.+ + +.+.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G-~~~~ 218 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-G-KLLR 218 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-S-CEEE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-c-cEEE
Confidence 8888665 667788999999974432 1 1222122222235788999998 8988888889999999988 5 5777
Q ss_pred EEecCCCCeEEEEEc-CCCCEEEE
Q 000681 1272 TIDAHRGSLSALAVH-RHAPIIAS 1294 (1354)
Q Consensus 1272 ~l~~h~~~VtsLafs-pdg~~Las 1294 (1354)
.+......+++++|. ++...|..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEE
Confidence 777665689999994 56554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=95.80 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCcchhhHHHHhhchh--hhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhh
Q 000681 459 PPEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1354)
Q Consensus 459 ~p~~lP~vLq~LlS~~--~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q 536 (1354)
+++.+|.+.++|..+. -|..|+..|+++.+.-+ --+.++.+|+++.++.|..++-.+..+=.
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 5677888888886654 55566666666642111 12456667777777777776655544311
Q ss_pred hhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000681 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1354)
Q Consensus 537 ~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l 616 (1354)
+....++..|.+++ +..|..++-.|+.+ .. ...++..|. |++|+||..++-
T Consensus 714 ------~~~~~l~~~L~D~d--~~VR~~Av~aL~~~-~~-------------~~~l~~~l~-------D~~~~VR~~aa~ 764 (897)
T PRK13800 714 ------GDAALFAAALGDPD--HRVRIEAVRALVSV-DD-------------VESVAGAAT-------DENREVRIAVAK 764 (897)
T ss_pred ------CCHHHHHHHhcCCC--HHHHHHHHHHHhcc-cC-------------cHHHHHHhc-------CCCHHHHHHHHH
Confidence 11224556666655 47777777777654 11 122344565 667777777777
Q ss_pred HHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+||.+......+ ...|..+++|+.|+||++++-+|+.+-
T Consensus 765 aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 765 GLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 777776542211 234666667777777777777776663
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=98.63 Aligned_cols=213 Identities=15% Similarity=0.220 Sum_probs=145.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--eEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG--~IrIWdl~~ 1119 (1354)
..-+|++|+-+.++|++|+-.|.|+++++.+|.......+|. ..|+.+.= +.+|..+++.+.-. -..+|++..
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---cccccccc--cCCcceeeeeccccCchHHHhcccc
Confidence 678999999999999999999999999999999999999999 88988875 67888888776543 467899854
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC--CCCeEEEEEEcCC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQVH 1197 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~--~~~Vtsl~~~s~~ 1197 (1354)
. +.. . +++.+ -. ++.|+.....-+.|+.-....+||+.+.. .+.++-... ...-..++.|+|+
T Consensus 1177 ~-~~~--~---Hsf~e----d~----~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1177 T-GGP--R---HSFDE----DK----AVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred c-cCc--c---ccccc----cc----eeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCCC
Confidence 1 111 1 11211 12 26776555555556655679999999988 665533211 1112344477888
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1277 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~ 1277 (1354)
...++ .|| .+||.|..+ .++.+..+. .-..-.|||+ |..++.-+ .|||+|+. ..+++...-
T Consensus 1242 D~LIl---ndG--vLWDvR~~~-aIh~FD~ft----~~~~G~FHP~--g~eVIINS-----EIwD~RTF-~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPE-AIHRFDQFT----DYGGGGFHPS--GNEVIINS-----EIWDMRTF-KLLHSVPSL- 1302 (1516)
T ss_pred cceEe---eCc--eeeeeccHH-HHhhhhhhe----ecccccccCC--CceEEeec-----hhhhhHHH-HHHhcCccc-
Confidence 77665 455 479999885 455554442 1223468999 88888776 48999998 455554432
Q ss_pred CCeEEEEEcCCCCEEEE
Q 000681 1278 GSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1278 ~~VtsLafspdg~~Las 1294 (1354)
.-..+.|+..|.++..
T Consensus 1303 -dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred -cceEEEeccCccchhh
Confidence 2356778877776654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=84.60 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=102.9
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCce---eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQ---MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1223 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~---~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~ 1223 (1354)
+..++.+..++++..++...+++...... ++........ -+++.+.. +...+..+..-|.++-+|+-+... .
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~--~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR--PTAISFIR-EDTSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC--cceeeeee-ccceEEEEeecCCceeeeeecccc--c
Confidence 34455566666666667766776654430 2222222111 23332332 334444444455555555443221 1
Q ss_pred eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 000681 1224 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIK 1302 (1354)
Q Consensus 1224 ~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~-~h~~~VtsLafspdg~~Lasgs~Dg~I~ 1302 (1354)
.....-||-+.++.|+|+|+ +.+|+++..|..|++-..... ..+..+- +|+.-|..++.-++ ..|++||.|++|+
T Consensus 143 ~~~~~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLR 218 (390)
T ss_pred CcchhhhhhhhhheeeecCC--CCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCCcEE
Confidence 11134488899999999999 899999999999999887655 3444443 69999999999865 4589999999999
Q ss_pred EEe-CCCceEEEEe
Q 000681 1303 VFS-LEGEQLGTIR 1315 (1354)
Q Consensus 1303 Iwd-~~g~~l~~i~ 1315 (1354)
+|| .+|+.+.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 999 5688776653
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0003 Score=78.87 Aligned_cols=255 Identities=17% Similarity=0.257 Sum_probs=178.9
Q ss_pred CcchHHHHhhHHHHhcCCCCCCCCC-------cchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHH-----------
Q 000681 436 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLA----------- 497 (1354)
Q Consensus 436 ~~ff~~qLtafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~la----------- 497 (1354)
|+=.++||.|--.|=++=+....|| |-.|-+.+.+-+-.+.+-.+. + .||...-
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfE------A--aWalTNiaSGtt~QTkvV 153 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFE------A--AWALTNIASGTTQQTKVV 153 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHH------H--HHHHhhhccCcccceEEE
Confidence 4556788877555544444555565 455555565533333322221 1 1553322
Q ss_pred HhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCc-hHHHHHHHHHHHHHhcC-
Q 000681 498 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAY-PEQRAMAAFVLAVIVDG- 575 (1354)
Q Consensus 498 l~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~-~~~r~~~af~La~l~~~- 575 (1354)
+..|-.|.|++||.++..+.|.-.|.-+.-|--+.+.|.--.+..|...-.+.+|.++... ..+| -+...|+-+|++
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGk 232 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGK 232 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCC
Confidence 3568899999999999888888877666666666666776677788888888888765431 3333 345578999988
Q ss_pred CcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHH
Q 000681 576 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRAS 655 (1354)
Q Consensus 576 ~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa 655 (1354)
+|.--|.-+ ..++.++.+++. ..+||+--=+|-+++.|-++..+.-...++.+++.+|..+|.++|..|..-
T Consensus 233 nP~P~w~~i-sqalpiL~KLiy-------s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 233 NPPPDWSNI-SQALPILAKLIY-------SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred CCCCchHHH-HHHHHHHHHHHh-------hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 555556544 456788999998 778999999999999999998888888899999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHH
Q 000681 656 AVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1354)
Q Consensus 656 ~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~ 721 (1354)
++=+.|.+|... +. +.++-+.-....++..+++.+.-.+|||+-+-+|-+-.
T Consensus 305 alR~vGNIVTG~-----------D~---QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 305 ALRSVGNIVTGS-----------DD---QTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred HHHhhcCeeecC-----------cc---ceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 999999998221 11 11222333445566666777777999999988876643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=86.93 Aligned_cols=185 Identities=11% Similarity=0.174 Sum_probs=134.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeee
Q 000681 1052 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1131 (1354)
Q Consensus 1052 dg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1131 (1354)
++..++.|+-...+..+|..+.+..+...... +.|+-|.. +++++.+|...|+|.+-|..+ .+.+ +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s----~~~i---h 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMRY----NNRNLFCGDTRGTVFLRDPNS----FETI---H 211 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---CceEEEEe----cCcEEEeecccceEEeecCCc----Ccee---e
Confidence 45567777777788889998877766665554 45777766 789999999999999999855 2333 5
Q ss_pred cccCCCCCcccceeEEEEecCCCeEEEEEC---------CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEE
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASGE---------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1202 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~v~~sp~~~~Lla~g~---------Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~ 1202 (1354)
++..|.+.+.. |+-.|+.|+++|. |..|+|||++..+ .+.-++.+.+..+.. +.+.-...++
T Consensus 212 t~~aHs~siSD------fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P~flr--f~Psl~t~~~ 282 (1118)
T KOG1275|consen 212 TFDAHSGSISD------FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGPQFLR--FHPSLTTRLA 282 (1118)
T ss_pred eeeccccceee------eeccCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCchhhh--hcccccceEE
Confidence 57888887755 4446889999874 4568999999887 666666554442222 3444567888
Q ss_pred EEECCCeEEEEE---CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000681 1203 AGFVDGSVRLYD---VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264 (1354)
Q Consensus 1203 sgs~DGsVrIwD---lr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~ 1264 (1354)
+.+..|...+-| +.+...-....... ...+..++++++ ++.++.|..+|.|.+|--+
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~---~s~i~~fDiSsn--~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNPN---GSGISAFDISSN--GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEccC---CCcceeEEecCC--CceEEEecccCcEeeecCC
Confidence 999999999999 44442222222222 255999999999 9999999999999999843
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=85.57 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=104.8
Q ss_pred EEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCc----eeeee
Q 000681 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----QMVNP 1179 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~----~~v~~ 1179 (1354)
++.+.+-.|-+-++.+ +..+- +. ....|.+ ..|...++.++.|+.+|.|.++|++... .+...
T Consensus 228 fs~G~sqqv~L~nvet--g~~qs------f~-sksDVfA----lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVET--GHQQS------FQ-SKSDVFA----LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ecccccceeEEEEeec--ccccc------cc-cchhHHH----HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 4445556677777765 32221 12 3444555 7777788999999999999999998752 13333
Q ss_pred ecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE--EEEecCCCCCEEEEEECCCc
Q 000681 1180 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG--ISFQPGLDPAKIVSASQAGD 1257 (1354)
Q Consensus 1180 i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~s--v~fsp~~~g~~Lasgs~DG~ 1257 (1354)
+. +++.|+++...+-++.+|++.+.+|+|++||+|.-+.-. ......||...-.- +.+++. ...+++++.|..
T Consensus 295 ly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~e--eg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEE--EGSIFSVGDDCY 369 (425)
T ss_pred EE--cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccc--cceEEEccCeeE
Confidence 32 345599997777788999999999999999999766311 12233455443333 344555 678888999999
Q ss_pred EEEEeCCCCCccEEEEec
Q 000681 1258 IQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1258 I~IWDl~~~~~~v~~l~~ 1275 (1354)
.+||.++.+ ..+.++.-
T Consensus 370 tRiWsl~~g-hLl~tipf 386 (425)
T KOG2695|consen 370 TRIWSLDSG-HLLCTIPF 386 (425)
T ss_pred EEEEecccC-ceeeccCC
Confidence 999999988 57766653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0091 Score=73.05 Aligned_cols=211 Identities=7% Similarity=-0.042 Sum_probs=123.7
Q ss_pred ceEEEeeCCCc-EEEEeCCCCCCeEEEEEcCCCCE-EEEEEC---CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEe
Q 000681 1022 FDLAVSKLNNP-IACWDTRFEKGTKTALLQPFSPI-VVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN 1096 (1354)
Q Consensus 1022 ~~L~~s~~d~~-I~iWd~~~~~~I~sL~fspdg~~-Latgs~---Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~ 1096 (1354)
+++.+.+.|+. .+.+... ..+..-.|+|||+. ++..+. +..|.++|..+++...... .. +......|
T Consensus 169 ~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~---g~~~~~~~-- 240 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ---GMLVVSDV-- 240 (419)
T ss_pred ceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC---CcEEeeEE--
Confidence 45555555552 3333322 35678899999984 665443 3468888998876544332 22 34556677
Q ss_pred eCCCCEEEE-EeCCC--eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC-C--eEEEEEC
Q 000681 1097 ELDVSLLLV-ASCNG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-S--SIMLWDL 1170 (1354)
Q Consensus 1097 s~d~~~L~t-gs~DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D-g--~I~VWDl 1170 (1354)
++||+.|+. .+.+| .|.++++.. +..+. +..+...... ..|+|+++.|+..++. | .|.+.|+
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~~------LT~~~~~d~~----p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNT--KTLTQ------ITNYPGIDVN----GNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCC--CcEEE------cccCCCccCc----cEECCCCCEEEEEECCCCCceEEEEEC
Confidence 789976654 44344 566666644 33222 2323221222 6799999988877632 2 6888899
Q ss_pred CCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1171 ~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D---------GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
.+++ ..+.... ... .. .++++|+.++..... ..|.+.|+.++. ..... . . .......|+
T Consensus 309 ~~g~-~~rlt~~-g~~---~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT-~-~---~~~~~p~~S 376 (419)
T PRK04043 309 NSGS-VEQVVFH-GKN---NS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLT-A-N---GVNQFPRFS 376 (419)
T ss_pred CCCC-eEeCccC-CCc---Cc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECC-C-C---CCcCCeEEC
Confidence 8877 3232221 111 22 578999988776654 368888988776 22221 1 1 123358899
Q ss_pred cCCCCCEEEEEECC-C--cEEEEeCCCC
Q 000681 1242 PGLDPAKIVSASQA-G--DIQFLDIRNH 1266 (1354)
Q Consensus 1242 p~~~g~~Lasgs~D-G--~I~IWDl~~~ 1266 (1354)
|+ |+.|+..+.+ + .+.+.++...
T Consensus 377 PD--G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 377 SD--GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CC--CCEEEEEEccCCcEEEEEEecCCC
Confidence 99 8777665543 2 3556666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=82.07 Aligned_cols=193 Identities=10% Similarity=0.090 Sum_probs=126.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCe-----EEEEECCCC---
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRTP--- 1218 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGs-----VrIwDlr~~--- 1218 (1354)
-+|++.++.++.|+.+|.|.+.+-.- + .++.++.+..+-|+.+ +.-...+.+++.+.|+. |+|||+...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~-~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-Q-LIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-e-eeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 46788899999999999888877432 2 3577777665545555 44444467887777654 999998743
Q ss_pred --Ceee---Eeec-CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC---CCccEEEEecCCCCeEEEEEcCCC
Q 000681 1219 --DMLV---CSTR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN---HKDAYLTIDAHRGSLSALAVHRHA 1289 (1354)
Q Consensus 1219 --~~~~---~~~~-~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~---~~~~v~~l~~h~~~VtsLafspdg 1289 (1354)
.... +.+. .......++.+++++.+ -..+|+|-.||.|..+.-+- ......-.....++|+.+++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1122 2221 11123567889999988 89999999999999885321 111111122235799999999988
Q ss_pred CE-EEEEeCCCcEEEEeCCCce--EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1290 PI-IASGSAKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1290 ~~-Lasgs~Dg~I~Iwd~~g~~--l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.. +.+++ -..|.+|.++|+. +..+.. ++..++|-+|++....+++++ +..|.+|+
T Consensus 184 ~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 184 KSVLFVAT-TEQVMLYSLSGRTPSLKVLDN--------NGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeEEEEe-cceeEEEEecCCCcceeeecc--------CCccceeeecCCCCccEEEec-CceEEEEc
Confidence 85 22222 2579999988877 222332 347889999987776565554 34566664
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.3e-05 Score=59.07 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=36.3
Q ss_pred ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1268 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1268 ~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00035 Score=93.34 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=108.2
Q ss_pred chhhHHHHhhch--hhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhh
Q 000681 462 QLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1354)
Q Consensus 462 ~lP~vLq~LlS~--~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l 539 (1354)
-++.+++.|..+ .-|..|+..|+++-+ ...++-+.++|.++..+.|..++--+.+|....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 566778888775 456677888887642 345678889999998899998888887774332221
Q ss_pred hcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000681 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1354)
Q Consensus 540 ~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1354)
...+..|++.+ ++.|..++-.|+.+-.. -...++..|. |++|.||..++.+|+
T Consensus 687 ------~~L~~~L~~~d--~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-------D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 687 ------PALRDHLGSPD--PVVRAAALDVLRALRAG------------DAALFAAALG-------DPDHRVRIEAVRALV 739 (897)
T ss_pred ------HHHHHHhcCCC--HHHHHHHHHHHHhhccC------------CHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 23455666544 69999998888876311 1235667888 899999999999999
Q ss_pred HhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
.+ +. .+.|+.++.|++|+||.+++-+|+.+-
T Consensus 740 ~~-~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 740 SV-DD-------------VESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred cc-cC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 85 11 124778999999999999999999885
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=80.14 Aligned_cols=234 Identities=15% Similarity=0.235 Sum_probs=178.9
Q ss_pred cchhhHHHHhhchhhhh--HHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhH--HHHHHHHHhhcC---h
Q 000681 461 EQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQI--LVFIWTKILALD---K 533 (1354)
Q Consensus 461 ~~lP~vLq~LlS~~~rl--ral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~--~~FIwa~i~~~~---~ 533 (1354)
+-.|.+.|+|.|..... .|+-.|++.-.-++-++...|..|..--+|-||++.+..++-+ +...++-+|+.- |
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 78899999999976555 4555667777777888999999999999999999888765543 567777888773 2
Q ss_pred hhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHH
Q 000681 534 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 613 (1354)
Q Consensus 534 ~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w 613 (1354)
+.|. + ........+.+...+ +|.-.=+|..++.|.++-.+.-.+-+..+....+.++|. .++..+..=
T Consensus 237 ~w~~--i-sqalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs-------~~sa~iqtP 304 (526)
T COG5064 237 DWSN--I-SQALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS-------HESAKIQTP 304 (526)
T ss_pred chHH--H-HHHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc-------CccccccCH
Confidence 2221 1 122345556665555 477777888899999888887777789999999999998 666666666
Q ss_pred HHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 000681 614 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 693 (1354)
Q Consensus 614 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 693 (1354)
++=.+|....+.+.-..+-|+.++...+..+|+.+---+|+|++.-++.+-.. . .+.-++-+|..+
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG-------------n-teqiqavid~nl 370 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG-------------N-TEQIQAVIDANL 370 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC-------------C-HHHHHHHHhccc
Confidence 67789999999888888889999999999999999999999999999987611 1 122234467777
Q ss_pred HHHHhhhccCCChhhhHHHHHHHHHHH
Q 000681 694 IRSLLTVVSDGSPLVRAEVAVALARFA 720 (1354)
Q Consensus 694 ~~~ll~~~~D~sp~VR~e~~~~l~~~v 720 (1354)
+-.|+.++.-+.-..|||+-++++-..
T Consensus 371 iPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 371 IPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777777788999998887544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00039 Score=80.59 Aligned_cols=240 Identities=14% Similarity=0.180 Sum_probs=162.0
Q ss_pred CCCEEEEEECCCcEEEEECCC---CceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEE
Q 000681 1052 FSPIVVAADENERIKIWNYEE---DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLV 1127 (1354)
Q Consensus 1052 dg~~Latgs~Dg~I~IWd~~t---g~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lv 1127 (1354)
-.+++.+++-||.++.|.-.. -+.+..+..|. ..|.+++. +.++.++.|++. |..++++|+.+- .++
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL---~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~----Dmi 89 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL---GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENF----DMI 89 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHH---HHHHhhhc--cccceeEeeccCcccceeEEEeecc----chh
Confidence 346889999999999996543 25566677787 77888887 679999999888 999999999651 111
Q ss_pred eee--ecccCCCCCcccceeEEEEecCCC----eEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCE
Q 000681 1128 TAF--SSIQGHKPGVRCSNVVVDWQQQSG----YLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1128 s~~--~~l~~h~~~V~si~~~v~~sp~~~----~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~ 1200 (1354)
... ..+++. ++|.-..+ .++++. ++|.|.|+|-........-+..-+..+|..+ ...+.+..
T Consensus 90 nmiKL~~lPg~----------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i-~y~qa~Ds 158 (558)
T KOG0882|consen 90 NMIKLVDLPGF----------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI-RYNQAGDS 158 (558)
T ss_pred hhcccccCCCc----------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE-Eeeccccc
Confidence 000 011111 34433333 455543 7899999998765513334445556679999 67778999
Q ss_pred EEEEECCCeEEEEECCC-C---C-eeeEeec------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000681 1201 LAAGFVDGSVRLYDVRT-P---D-MLVCSTR------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1269 (1354)
Q Consensus 1201 L~sgs~DGsVrIwDlr~-~---~-~~~~~~~------~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~ 1269 (1354)
+++....|.|.-|.... - + .+...++ .....+....++.|+|+ +..+.+-+.|..|++++.++++ .
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g~qistl~~DrkVR~F~~KtGk-l 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--GAQISTLNPDRKVRGFVFKTGK-L 235 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc--cCcccccCcccEEEEEEeccch-h
Confidence 99999999999998773 1 1 0110010 11223467889999999 9999999999999999999884 3
Q ss_pred EEEEec--------------------------------CC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEe
Q 000681 1270 YLTIDA--------------------------------HR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1270 v~~l~~--------------------------------h~-~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~ 1315 (1354)
++.+.. |. ..-+.+.|...|++|.-|+-=| |+|.++....+..+-
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 333321 11 1235677888899998887655 788886554444443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=82.10 Aligned_cols=206 Identities=13% Similarity=0.155 Sum_probs=137.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-CCeE
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSI 1165 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-Dg~I 1165 (1354)
..|+.+.- ...+++.+++-||.++.|.-.... ..+.+ ..+..|...+.+ ++-+.++-.+.+.++ |..+
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~is-GvEfV---KhFraHL~~I~s----l~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRIS-GVEFV---KHFRAHLGVILS----LAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCcc-ceeeh---hhhHHHHHHHHh----hhccccceeEeeccCcccce
Confidence 45665544 467899999999999999753311 12233 344556666665 555556666666676 9999
Q ss_pred EEEECCCCceeeeeecCCCC-CCeEEEEEEcCCC----CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000681 1166 MLWDLEKEQQMVNPIPSSSD-CSISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1240 (1354)
Q Consensus 1166 ~VWDl~t~~~~v~~i~~~~~-~~Vtsl~~~s~~g----~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~f 1240 (1354)
+++|+++-. .+..++...- ..+..+ ...| ..-++...+|.|.++|-+...+....++ .-|..+|..+.+
T Consensus 79 KvfDvEn~D-minmiKL~~lPg~a~wv---~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFD-MINMIKLVDLPGFAEWV---TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRY 152 (558)
T ss_pred eEEEeeccc-hhhhcccccCCCceEEe---cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEe
Confidence 999998766 4444332211 112222 2223 2334455789999999886653333332 246799999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCC-C---C-ccE---------EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1241 QPGLDPAKIVSASQAGDIQFLDIRN-H---K-DAY---------LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1241 sp~~~g~~Lasgs~DG~I~IWDl~~-~---~-~~v---------~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
.+. ++.+++....|.|.-|.... . + ... ..+.......+++.|+|++..+++-+.|..|++++.
T Consensus 153 ~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 999 99999999999999998773 0 0 011 111123456789999999999999999999999995
Q ss_pred C-CceE
Q 000681 1307 E-GEQL 1311 (1354)
Q Consensus 1307 ~-g~~l 1311 (1354)
. |+.+
T Consensus 231 KtGklv 236 (558)
T KOG0882|consen 231 KTGKLV 236 (558)
T ss_pred ccchhh
Confidence 4 4433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0039 Score=80.38 Aligned_cols=200 Identities=18% Similarity=0.143 Sum_probs=131.4
Q ss_pred CCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEEC--
Q 000681 1138 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV-- 1215 (1354)
Q Consensus 1138 ~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDl-- 1215 (1354)
..|.+ +.|..+...++++...|.|.+-|.++.. ..+-+..+..|.++ .|++++..++..+.++++.+-+-
T Consensus 69 ~~i~s----~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg~vd~GI~aa-swS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVS----VQFLADTNSICVITALGDIILVDPETLE---LEIVGNVDNGISAA-SWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEE----EEEecccceEEEEecCCcEEEEcccccc---eeeeeeccCceEEE-eecCCCcEEEEEeCCcEEEEEeccc
Confidence 45555 8888899999999999999999887765 33344445558888 88999999999998888766332
Q ss_pred --CCCCee----------e--------EeecCCCC------------------CCCCeEEEEEecCCCCCEEEEEE----
Q 000681 1216 --RTPDML----------V--------CSTRPHTQ------------------QVERVVGISFQPGLDPAKIVSAS---- 1253 (1354)
Q Consensus 1216 --r~~~~~----------~--------~~~~~~~~------------------h~~~I~sv~fsp~~~g~~Lasgs---- 1253 (1354)
-..+.+ + ..+++..| ....=++|+|--+ |.++++..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESE 218 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEecc
Confidence 111111 0 00100000 0112345888877 99998843
Q ss_pred -CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE---eCCCcEEEEeCCCceEEEEeccCCccccccCCCe
Q 000681 1254 -QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1254 -~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg---s~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
....|+|||.. + ..-.+-....+.-.+++|-|.|..+|+- ++|+.|.+|..+|..-..+.. . + ......|
T Consensus 219 ~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~--~-p~de~~v 292 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-P--F-PLDEKEV 292 (1265)
T ss_pred CCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-C--C-cccccch
Confidence 23789999977 3 1222222223445689999999999886 456789999988866444332 0 0 0122349
Q ss_pred EEEEEecCCCEEEE---EECCCeEEEc
Q 000681 1330 NCLTFHPYQVLLAA---GSADACVSIH 1353 (1354)
Q Consensus 1330 ~sLafspdg~~Las---gs~Dg~V~IW 1353 (1354)
..++|+.++..||+ ......|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999998 4445559988
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0051 Score=79.41 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=141.5
Q ss_pred hheeecCCCCceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECCCcEEEEECC----C------
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYE----E------ 1072 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~----t------ 1072 (1354)
|...++..+...+++....|.|.+-|.++. .+|.+++|+||++.++..+.++++.+-... .
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~ 150 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDA 150 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccc
Confidence 677788888888888888888888787765 889999999999999998877887765431 0
Q ss_pred -------------CceEEEeeCCCC------------------CCCCeEEEEEEeeCCCCEEEEE-----eCCCeEEEEE
Q 000681 1073 -------------DTLLNSFDNHDF------------------PDKGISKLCLVNELDVSLLLVA-----SCNGNIRIWK 1116 (1354)
Q Consensus 1073 -------------g~~l~~~~~h~~------------------~~~~ItsL~f~~s~d~~~L~tg-----s~DG~IrIWd 1116 (1354)
|+....|.+... ..+.=+.+.| -.||.++++. .....|+|||
T Consensus 151 d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 151 DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEec
Confidence 122223332210 0011234777 6799999883 3337899999
Q ss_pred ccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEE---ECCCeEEEEECCCCceeeeeecCCCCCC-eEEEE
Q 000681 1117 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKEQQMVNPIPSSSDCS-ISALT 1192 (1354)
Q Consensus 1117 l~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~---g~Dg~I~VWDl~t~~~~v~~i~~~~~~~-Vtsl~ 1192 (1354)
-+ +.. .....++....-+++|-|.|..+++. ++|+.|.+|.-+........++...+.. |..+
T Consensus 229 rE---g~L---------ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L- 295 (1265)
T KOG1920|consen 229 RE---GAL---------NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL- 295 (1265)
T ss_pred cc---chh---------hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee-
Confidence 63 111 11111222222249999988888876 3567799998654331112222222222 8899
Q ss_pred EEcCCCCEEEE---EECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000681 1193 ASQVHGGQLAA---GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1193 ~~s~~g~~L~s---gs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
.|+.++..|++ ......|++|-+.+..-..+..-.+. ...-+.|+|. ....+..-..+|.+.++|+
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~----~~~~~~W~p~-~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS----QKALLMWDPV-TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc----ccccccccCC-CceeEEEEecCCcEEEEEE
Confidence 67778888877 34444599999887653222221221 1112777776 4444554446666655554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.051 Score=68.05 Aligned_cols=235 Identities=14% Similarity=0.194 Sum_probs=135.1
Q ss_pred CEEEEEECCCcEEEEECCCCceEEEeeCCCCC--CCCeE-EEEEEeeCCCCEEEEEe---------CCCeEEEEEccCCC
Q 000681 1054 PIVVAADENERIKIWNYEEDTLLNSFDNHDFP--DKGIS-KLCLVNELDVSLLLVAS---------CNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1054 ~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~--~~~It-sL~f~~s~d~~~L~tgs---------~DG~IrIWdl~~~~ 1121 (1354)
..+++++.+|.|.-+|.++|+.+..+...... ...+. +..+ .+..++.++ .+|.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVET-- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCC--
Confidence 67888888999999999999999887754410 00011 1222 234555554 357788888766
Q ss_pred CcceEEeeeecccC----------------C-CCCcccceeEEEEecCCCeEEEEECCC------------------eEE
Q 000681 1122 DKQKLVTAFSSIQG----------------H-KPGVRCSNVVVDWQQQSGYLYASGEVS------------------SIM 1166 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~----------------h-~~~V~si~~~v~~sp~~~~Lla~g~Dg------------------~I~ 1166 (1354)
++..-. +..... + ...+.+ ....++.++.+++++.++ .|.
T Consensus 185 G~~~W~--~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~---~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 185 GKLLWR--FYTTEPDPNAFPTWGPDRQMWGPGGGTSWA---SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred CceeeE--eeccCCCcCCCCCCCCCcceecCCCCCccC---CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 332221 111000 0 011222 134455678888886554 799
Q ss_pred EEECCCCceeeeeecCCCCC----------CeEEEEEEcCCCC---EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000681 1167 LWDLEKEQQMVNPIPSSSDC----------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1233 (1354)
Q Consensus 1167 VWDl~t~~~~v~~i~~~~~~----------~Vtsl~~~s~~g~---~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~ 1233 (1354)
-+|..+++ .+..++..... .+..+ ...++. .+++++.+|.+..+|.++++.....-..
T Consensus 260 Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~--~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------ 330 (488)
T cd00216 260 ALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADI--KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------ 330 (488)
T ss_pred EEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEec--cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------
Confidence 99999999 77665532110 01111 012333 6788899999999999999854432111
Q ss_pred CeEEEEEecCCCCCEEEEE------------------ECCCcEEEEeCCCCCccEEEEecCC--------CCe--EEEEE
Q 000681 1234 RVVGISFQPGLDPAKIVSA------------------SQAGDIQFLDIRNHKDAYLTIDAHR--------GSL--SALAV 1285 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasg------------------s~DG~I~IWDl~~~~~~v~~l~~h~--------~~V--tsLaf 1285 (1354)
...+...|+ .++.+ ..+|.|.-.|..++ +.+.+..... .+. ..+..
T Consensus 331 -~~~~~~~~~----~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 331 -EQPMAYDPG----LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred -ccccccCCc----eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe
Confidence 011122221 22221 23577888888887 4554444220 111 12222
Q ss_pred cCCCCEEEEEeCCCcEEEEe-CCCceEEEEec
Q 000681 1286 HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1286 spdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
.+.+|+.++.||.|+.+| .+|+.+.+.+.
T Consensus 405 --~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 --AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred --cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456788888999999999 67888887765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.8e-05 Score=93.25 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=131.8
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
..++|..++ ...++++| +.+.+.|++|+..|.|+++++.+ |..+ .....|...++. +.-+.+|.
T Consensus 1093 ~w~~frd~~---~~fTc~af--s~~~~hL~vG~~~Geik~~nv~s--G~~e-----~s~ncH~SavT~----vePs~dgs 1156 (1516)
T KOG1832|consen 1093 SWRSFRDET---ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSS--GSME-----ESVNCHQSAVTL----VEPSVDGS 1156 (1516)
T ss_pred cchhhhccc---cceeeEEe--ecCCceEEeeeccceEEEEEccC--cccc-----cccccccccccc----ccccCCcc
Confidence 344566777 78999999 68999999999999999999977 3322 225778888877 66667888
Q ss_pred eEEEEECC--CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1155 YLYASGEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1155 ~Lla~g~D--g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
.+++.+.. --..+|++..--...+++.+ -.++ -|+..-..-+.|+......+||+.+...+...+....+..
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e-----d~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDE-----DKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeeeccccCchHHHhccccccCccccccc-----ccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 88777533 25789998753325566654 2344 3333333344555556789999999875444332222223
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
..-+.+.|+|. ...++ .|| .+||+|.. +.++.|......+ .=.|||+|.-++.-+ .|||+.
T Consensus 1231 y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPC--DTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred hhccccccCCC--cceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhH
Confidence 34478889998 56555 345 47999987 6776666443222 236999999888766 488843
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00015 Score=56.92 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=34.0
Q ss_pred ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1309 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1309 ~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
+.+.++.+ |. +.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~-h~-------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HS-------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SS-------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CC-------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56677777 65 8999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=74.26 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=149.3
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhc
Q 000681 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1354)
Q Consensus 473 ~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L 552 (1354)
+..+..||.-|--|+.-=--| +..++.|+..-++..|+++..++|..++++++.+..+.|.+|+..+..++....+.+|
T Consensus 97 le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 456778888766666322223 3446889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhh
Q 000681 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1354)
Q Consensus 553 ~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~ 632 (1354)
...+. -.-|.=+-|-++.+.++++.||..-+..+-+..+...|+.. +.++.++.=++.+++.|......-+...
T Consensus 176 s~~~~-~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-----~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 176 SSDDP-NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-----NTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred ccCCC-chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-----CcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 84443 34567788889999999999999999998899999999821 2678888899999999997766655555
Q ss_pred cccCchhhHhhhhcCCChHHHHHHHHHHhhccc
Q 000681 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
.....+..+..+..-..-+++-+++-++=+++.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 556666566667766677889888888888873
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0041 Score=79.80 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=105.7
Q ss_pred EecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEc----CCCCEEEEEECCCeEEEEECCCCC-eee
Q 000681 1149 WQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ----VHGGQLAAGFVDGSVRLYDVRTPD-MLV 1222 (1354)
Q Consensus 1149 ~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s----~~g~~L~sgs~DGsVrIwDlr~~~-~~~ 1222 (1354)
..++...|+... ....|+-.|+++++ .+..+..+...+|..++-.. -.+..-..|-.+..+..||.|-.. .++
T Consensus 489 ~~~d~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 489 HDQDRNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred hccccceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 344555555553 56789999999999 99999998877677773221 123456678888999999999643 233
Q ss_pred Ee-ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 000681 1223 CS-TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1301 (1354)
Q Consensus 1223 ~~-~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I 1301 (1354)
.. .+.. .......|++-..+ .+||+|+.+|.||+||- .++.....+.+-..+|.+|.++.||++|++.+. ..+
T Consensus 568 ~~~~k~Y-~~~~~Fs~~aTt~~---G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyL 641 (794)
T PF08553_consen 568 DSQSKQY-SSKNNFSCFATTED---GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYL 641 (794)
T ss_pred ecccccc-ccCCCceEEEecCC---ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceE
Confidence 21 1111 23456777776654 68999999999999994 333455556677889999999999998776654 567
Q ss_pred EEEe
Q 000681 1302 KVFS 1305 (1354)
Q Consensus 1302 ~Iwd 1305 (1354)
.+++
T Consensus 642 lLi~ 645 (794)
T PF08553_consen 642 LLID 645 (794)
T ss_pred EEEE
Confidence 7777
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.7e-05 Score=89.99 Aligned_cols=202 Identities=23% Similarity=0.284 Sum_probs=130.9
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-----CC
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EV 1162 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-----~D 1162 (1354)
.+.++++....+..++++|..+|.|-+-.+...... .+...+++....++ ++|++-+..++++| .|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~----lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTS----LAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccc----cccccccHHHHHhhhhhhccc
Confidence 455666533344568889999999999887653222 22335677777777 88887655555554 35
Q ss_pred CeEEEEECCCCce-eee--eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000681 1163 SSIMLWDLEKEQQ-MVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1239 (1354)
Q Consensus 1163 g~I~VWDl~t~~~-~v~--~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~ 1239 (1354)
..+.|||+.+.-. +.. .+.+.......++ ++..+.+.+.+|.....+.++|+|........+. +..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~-cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSV-CWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccccccccccCcccc-ccccCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccce
Confidence 6799999987620 111 2222223335677 4447888999999999999999994432222221 13567788
Q ss_pred EecCCCCCEEEEEECCCcEEEEe-CCCCCccEEEEecCCC----CeEEEEEcCCCC-EEEEEeC-CCcEEEEeC
Q 000681 1240 FQPGLDPAKIVSASQAGDIQFLD-IRNHKDAYLTIDAHRG----SLSALAVHRHAP-IIASGSA-KQLIKVFSL 1306 (1354)
Q Consensus 1240 fsp~~~g~~Lasgs~DG~I~IWD-l~~~~~~v~~l~~h~~----~VtsLafspdg~-~Lasgs~-Dg~I~Iwd~ 1306 (1354)
+.|- .++++++-. ||.|.+|| .++-+.++..+..... .+..++|+|... .+++.+. .++|+.|++
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 8885 477877666 99999999 5544445444432222 489999999755 4555544 478999984
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.1 Score=63.75 Aligned_cols=237 Identities=12% Similarity=0.171 Sum_probs=126.6
Q ss_pred EEEEcCCCCEEEEEECC----------C-cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEE
Q 000681 1046 TALLQPFSPIVVAADEN----------E-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1114 (1354)
Q Consensus 1046 sL~fspdg~~Latgs~D----------g-~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrI 1114 (1354)
.++..|.|..+|...++ . .|.||+.. |+.+.++.-.. +.|.++.| .+...|++...||.+++
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~w---t~~e~LvvV~~dG~v~v 105 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGW---TDDEELVVVQSDGTVRV 105 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEE---CCCCeEEEEEcCCEEEE
Confidence 45566766666665433 2 48899876 77777766555 68999999 34567777789999999
Q ss_pred EEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEE-ECCCCceeee---eecCCC-----C
Q 000681 1115 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW-DLEKEQQMVN---PIPSSS-----D 1185 (1354)
Q Consensus 1115 Wdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VW-Dl~t~~~~v~---~i~~~~-----~ 1185 (1354)
||+.. ..+.. . . .......|........+.-.+|.++..+ ++.+.+. +..... ..+ .++... .
T Consensus 106 y~~~G---~~~fs-l-~-~~i~~~~v~e~~i~~~~~~~~GivvLt~-~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~ 177 (410)
T PF04841_consen 106 YDLFG---EFQFS-L-G-EEIEEEKVLECRIFAIWFYKNGIVVLTG-NNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWW 177 (410)
T ss_pred EeCCC---ceeec-h-h-hhccccCcccccccccccCCCCEEEECC-CCeEEEEeCccccc-hhhccccCCCcccccccc
Confidence 99853 11110 0 0 0001111211100011222344444433 3444333 333221 111 111110 0
Q ss_pred CCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000681 1186 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1186 ~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~ 1265 (1354)
..+..+.....+....+....++.+.+.+-..-+. . ...+++..+++||+ |+++|.-..+|.+.+.+..-
T Consensus 178 ~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i----~~~~~i~~iavSpn--g~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 178 PSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----I----DSDGPIIKIAVSPN--GKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred cccccceEeecCcceEEEEecCCEEEEEEcccccc----c----cCCCCeEEEEECCC--CCEEEEEECCCCEEEEECcc
Confidence 01111112334455555555566666544332211 1 11268999999999 99999999999999998765
Q ss_pred CCccEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCce
Q 000681 1266 HKDAYLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1310 (1354)
Q Consensus 1266 ~~~~v~~l~~h-~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~ 1310 (1354)
. +.+..+... ......+.|.-+..+++.- +..|.+....+..
T Consensus 248 ~-~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~~ 290 (410)
T PF04841_consen 248 S-EKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGDS 290 (410)
T ss_pred c-ceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCCc
Confidence 5 455555544 3456777787655444333 3455555544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.047 Score=68.39 Aligned_cols=280 Identities=12% Similarity=0.015 Sum_probs=147.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCC--CC-CCe--EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEE
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDF--PD-KGI--SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1127 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~--~~-~~I--tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv 1127 (1354)
+..+.+++.++.|.-.|..+|+.+..+..... .. ..+ ..+.. .++..++.++.+|.|.-+|..+ ++..-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~T--G~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAET--GKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCC--CCEeee
Confidence 44666777789999999999988887765431 00 001 11122 1337888888999999999877 433221
Q ss_pred eeeecccCC---CCCcccceeEEEEecCCCeEEEEE---------CCCeEEEEECCCCceeeeeecCCCC----------
Q 000681 1128 TAFSSIQGH---KPGVRCSNVVVDWQQQSGYLYASG---------EVSSIMLWDLEKEQQMVNPIPSSSD---------- 1185 (1354)
Q Consensus 1128 s~~~~l~~h---~~~V~si~~~v~~sp~~~~Lla~g---------~Dg~I~VWDl~t~~~~v~~i~~~~~---------- 1185 (1354)
+ ....+ ...+.+.. .. .++.+++++ .+|.|..+|..+++ .+..+.....
T Consensus 136 --~-~~~~~~~~~~~i~ssP---~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 136 --F-GNNDQVPPGYTMTGAP---TI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred --e-cCCCCcCcceEecCCC---EE--ECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCCC
Confidence 0 11111 00122211 11 135666653 36789999999998 6666544211
Q ss_pred ---------CCeEEEEEEcCCCCEEEEEECCC------------------eEEEEECCCCCeeeEeecCCCCCCCC---e
Q 000681 1186 ---------CSISALTASQVHGGQLAAGFVDG------------------SVRLYDVRTPDMLVCSTRPHTQQVER---V 1235 (1354)
Q Consensus 1186 ---------~~Vtsl~~~s~~g~~L~sgs~DG------------------sVrIwDlr~~~~~~~~~~~~~~h~~~---I 1235 (1354)
..|.+--...+.+..++.++.++ .|.-+|..+++..-+.. . ..|... .
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~-~-~~~~~~~~~~ 284 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ-T-TPHDLWDYDG 284 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee-C-CCCCCccccc
Confidence 11111112334567788887765 79999999998544321 1 111111 0
Q ss_pred -EEEEEecC--CCCC---EEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE--------------
Q 000681 1236 -VGISFQPG--LDPA---KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG-------------- 1295 (1354)
Q Consensus 1236 -~sv~fsp~--~~g~---~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg-------------- 1295 (1354)
....+.+. .++. .++.++.+|.+...|.+++ +.+...... ...++.+| +.+++.+
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC-ceEEEccccccccCcccccCC
Confidence 00111110 0132 6788889999999999998 566554321 11233344 2222211
Q ss_pred ---eCCCcEEEEe-CCCceEEEEeccCCcc-ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1296 ---SAKQLIKVFS-LEGEQLGTIRYHHPSF-MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1296 ---s~Dg~I~Iwd-~~g~~l~~i~~~h~~f-l~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..+|.|.-.| .+|+.+-+... .... ......+...-...-.+..|.+++.||.|..+|
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1356677777 45766665543 1000 000001111001112456777777888887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.042 Score=62.05 Aligned_cols=211 Identities=13% Similarity=0.198 Sum_probs=118.4
Q ss_pred cccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeE
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1210 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsV 1210 (1354)
.+.+....+.+ ++|+|+++.|++.. ..+.|..++.. ++ .++.++.......-.|+. -.++.++++.-.++.+
T Consensus 16 ~l~g~~~e~SG----LTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSG----LTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEE----EEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEE
T ss_pred ECCCccCCccc----cEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCcE
Confidence 35566666777 99999988887775 67888888874 56 677776544444778844 3455555544458999
Q ss_pred EEEECCCCCe-----eeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCC--CCccEEEEe-------
Q 000681 1211 RLYDVRTPDM-----LVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN--HKDAYLTID------- 1274 (1354)
Q Consensus 1211 rIwDlr~~~~-----~~~~~~--~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~--~~~~v~~l~------- 1274 (1354)
.++++..... ....+. ....++..+-.++|.+. ++.|+.+-...-..+|.++. ....+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 9999843221 111121 12235567999999998 77777777776677777764 111221111
Q ss_pred -cCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCceEEEEeccCCcccc--ccCCCeEEEEEecCCCEEEEEECCCeE
Q 000681 1275 -AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1275 -~h~~~VtsLafspdg-~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~--~~~~~V~sLafspdg~~Lasgs~Dg~V 1350 (1354)
.....+++++++|.. .+++.+..+..|.++|.+|+.+..+.- ..++.+ ......-.|+|.++|.+.+++ .-+..
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L-~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSL-DRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEe-CCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 123468899999975 466777778899999999998887765 433322 233457899999999766654 55555
Q ss_pred EEc
Q 000681 1351 SIH 1353 (1354)
Q Consensus 1351 ~IW 1353 (1354)
.+|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.054 Score=62.30 Aligned_cols=181 Identities=15% Similarity=0.182 Sum_probs=115.8
Q ss_pred EEEecCCCeEEEEE-----CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC---------------
Q 000681 1147 VDWQQQSGYLYASG-----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV--------------- 1206 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g-----~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~--------------- 1206 (1354)
-.|++++..|+++- ..|.|-|||....-..+.++..+.-. -..+ .+.++|..|+++-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG-PHel-~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG-PHEL-LLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC-hhhE-EEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 67899999999984 34889999999433277788765443 3444 45678877766532
Q ss_pred ---CCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEEECCCc-------EEEEeCCCCCccEEEEe-
Q 000681 1207 ---DGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSASQAGD-------IQFLDIRNHKDAYLTID- 1274 (1354)
Q Consensus 1207 ---DGsVrIwDlr~~~~~~~~~~-~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~-------I~IWDl~~~~~~v~~l~- 1274 (1354)
+-++...|.++++ ++.... ....|...|..+++.++ |..++..-..|. |-+++... .+..+.
T Consensus 134 ~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~ 207 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPA 207 (305)
T ss_pred hhcCCceEEEecCCCc-eeeeeecCccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcCCC---cceeccC
Confidence 2345666777777 333321 12346778999999988 766665544432 33333222 222222
Q ss_pred ------cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000681 1275 ------AHRGSLSALAVHRHAPIIASGS-AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1275 ------~h~~~VtsLafspdg~~Lasgs-~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
.-.+.+-++++++++.++++.| ..+.+.+|| .+|..+..... ..+..++-.+++ ++++.+.
T Consensus 208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence 2246789999999998775554 567899998 56666665544 346777777766 5555443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.13 Score=56.71 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeec
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
..+++.|+-.+.+.--|..+|+....-... .+|.+-+.. -|++++.|+..|.+.+.+..+ +.+- ..+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t--Gs~~--w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV---VGDFVVLGCYSGGLYFLCVKT--GSQI--WNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE---ECCEEEEEEccCcEEEEEecc--hhhe--eeeee
Confidence 457888888899999999999877653322 355544442 467899999999999999877 3211 11111
Q ss_pred ccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEE
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1212 (1354)
Q Consensus 1133 l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrI 1212 (1354)
. ..|.+ .....++++.+..++.|+..+..|.++.. ++...+...+..+.- ...+....+.++...|.|.-
T Consensus 92 ~----~~vk~---~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP--~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 92 L----ETVKV---RAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP--VIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred h----hhhcc---ceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc--eecCCCceEEEEeccceEEE
Confidence 2 12222 13345689999999999999999999998 888877543321111 23343344555555666555
Q ss_pred EECCCC
Q 000681 1213 YDVRTP 1218 (1354)
Q Consensus 1213 wDlr~~ 1218 (1354)
-.....
T Consensus 162 vt~~~~ 167 (354)
T KOG4649|consen 162 VTKNPY 167 (354)
T ss_pred EccCCC
Confidence 454443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.046 Score=65.53 Aligned_cols=283 Identities=12% Similarity=0.097 Sum_probs=147.1
Q ss_pred CcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCC---------------C
Q 000681 1031 NPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP---------------D 1086 (1354)
Q Consensus 1031 ~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~---------------~ 1086 (1354)
+.+.++|++++ ..+....|+|+|+.++... ++.|.+++..+++..+ +...... -
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceecccccc
Confidence 46778888875 5688999999999999987 7899999988774332 2211100 0
Q ss_pred CCeEEEEEEeeCCCCEEEEEeC-CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeE
Q 000681 1087 KGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I 1165 (1354)
+.-..+-| ++|+++|+.... +..|+.+.+........ ....+.. +.+-..|.... .-.+
T Consensus 101 ~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~----------~yp~~~~----~~YPk~G~~np----~v~l 160 (353)
T PF00930_consen 101 DRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------QYPEVES----IRYPKAGDPNP----RVSL 160 (353)
T ss_dssp SSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------SS-EEEE----EE--BTTS-------EEEE
T ss_pred ccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccc----------cCCcccc----cccCCCCCcCC----ceEE
Confidence 12234556 899998887653 45555555422101000 0001111 22211222111 1137
Q ss_pred EEEECCCCceee-eeec---CCCCCCeEEEEEEcCCCCEEEEEE--CCC---eEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000681 1166 MLWDLEKEQQMV-NPIP---SSSDCSISALTASQVHGGQLAAGF--VDG---SVRLYDVRTPDMLVCSTRPHTQQVERVV 1236 (1354)
Q Consensus 1166 ~VWDl~t~~~~v-~~i~---~~~~~~Vtsl~~~s~~g~~L~sgs--~DG---sVrIwDlr~~~~~~~~~~~~~~h~~~I~ 1236 (1354)
.|+|+.+++ .. .... ......+..+ .+.++++.|+..- .+. .+.++|..++...........+.-..-.
T Consensus 161 ~v~~~~~~~-~~~~~~~~~~~~~~~yl~~v-~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 161 FVVDLASGK-TTELDPPNSLNPQDYYLTRV-GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEESSSTC-CCEE---HHHHTSSEEEEEE-EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEECCCCc-EEEeeeccccCCCccCcccc-eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 778988877 32 1222 1234447777 4555666344433 222 4777788776533222212221112223
Q ss_pred EEEEe-cCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEE-EEEcCCCCEE-EEEeCC--C--cEEEEeCC-C
Q 000681 1237 GISFQ-PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRHAPII-ASGSAK--Q--LIKVFSLE-G 1308 (1354)
Q Consensus 1237 sv~fs-p~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vts-Lafspdg~~L-asgs~D--g--~I~Iwd~~-g 1308 (1354)
...+. ++ +..++.....||.-+||-+.........+....-.|.. +.+++++..| .++..+ + .|..-+++ +
T Consensus 239 ~~~~~~~~-~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPD-GNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTT-SSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCC-CCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 55554 55 35566666677765555444332244555555556755 6788887744 455442 2 44444577 7
Q ss_pred ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000681 1309 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1309 ~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
..+..+.. .. +.-..+.|+|++++++....
T Consensus 318 ~~~~~LT~-~~-------~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 318 GEPKCLTC-ED-------GDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TEEEESST-TS-------STTEEEEE-TTSSEEEEEEE
T ss_pred CCeEeccC-CC-------CCceEEEECCCCCEEEEEEc
Confidence 77777776 33 11278999999988776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.006 Score=70.36 Aligned_cols=256 Identities=13% Similarity=0.112 Sum_probs=135.2
Q ss_pred EEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccc
Q 000681 1065 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCS 1143 (1354)
Q Consensus 1065 I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~-~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si 1143 (1354)
|++.+..+-+....+..+. ..|.+++| ++.. .++..++.+..|+|.|+++. ..+ ..+..+ ..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g---~~Irdlaf--Sp~~~GLl~~asl~nkiki~dlet~----~~v---ssy~a~-~~~wS- 240 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEG---SFIRDLAF--SPFNEGLLGLASLGNKIKIMDLETS----CVV---SSYIAY-NQIWS- 240 (463)
T ss_pred eEEeccCCcchhhcccccc---hhhhhhcc--CccccceeeeeccCceEEEEecccc----eee---eheecc-CCcee-
Confidence 4444444444444344444 68999999 4544 48899999999999999772 112 223344 56676
Q ss_pred eeEEEEecCCCeEEE-EECCCeEEEEECCCCceeeeeecC-CCCCCeEEEEEEcCC-----CCEEEEEECCCeEEEEECC
Q 000681 1144 NVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVR 1216 (1354)
Q Consensus 1144 ~~~v~~sp~~~~Lla-~g~Dg~I~VWDl~t~~~~v~~i~~-~~~~~Vtsl~~~s~~-----g~~L~sgs~DGsVrIwDlr 1216 (1354)
++|.-++...+- |-..|.|.|||++..+..+..+.+ -...+|..++..+++ |..++....+ ...|.+.
T Consensus 241 ---C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 241 ---CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV 315 (463)
T ss_pred ---eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence 888877665554 458899999999976634444444 233446666444443 3344444332 4567665
Q ss_pred CCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc---EE---E-EeCCCCCccEEEE-ecCCC-C------e
Q 000681 1217 TPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD---IQ---F-LDIRNHKDAYLTI-DAHRG-S------L 1280 (1354)
Q Consensus 1217 ~~~~-~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~---I~---I-WDl~~~~~~v~~l-~~h~~-~------V 1280 (1354)
.... ...+. . .+..+...++..++. ....|++.-.+.. ++ . -|-+.+ .++... .++.+ . -
T Consensus 316 ~s~~~~p~vl-e-le~pG~cismqy~~~-snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~ 391 (463)
T KOG1645|consen 316 FSAECLPCVL-E-LEPPGICISMQYHGV-SNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTT 391 (463)
T ss_pred ccccCCCccc-c-cCCCcceeeeeecCc-cceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccc
Confidence 3221 11111 1 122355666666665 2334444333210 11 0 111122 122111 11111 0 0
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEec-CC-CEEEEEECCCeEEEc
Q 000681 1281 SALAVHRHAPI-IASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP-YQ-VLLAAGSADACVSIH 1353 (1354)
Q Consensus 1281 tsLafspdg~~-Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafsp-dg-~~Lasgs~Dg~V~IW 1353 (1354)
..+.-.++.++ +..|...+.+.+|| .+++.+.++.. ..+|.++.... ++ .+|++-. |..++||
T Consensus 392 ~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~---------~epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 392 QAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL---------SEPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeccccccEEEEecCCcceeEEeccchhheeeeccc---------CcceeecceeecCCcchhhhee-cceEEEE
Confidence 11111334454 44556678899999 45666676654 25677776543 33 4666654 5577776
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.21 Score=61.08 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=59.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.....|.+++++|+...++.|+.||.|.+||.........+. . -.++.++|||+|.++++|+..|.+.+||
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka--~-------~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA--E-------FIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee--c-------ccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 457789999999999999999999999999965443333332 1 3578999999999999999999999997
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0063 Score=70.15 Aligned_cols=251 Identities=11% Similarity=0.087 Sum_probs=133.1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc
Q 000681 1040 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~ 1118 (1354)
.+..|..++|+|+.. ++..++-+..|+|.|+++...+..+..++ .+.+++|. -.+.++|+.|-.+|.|.|||+.
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~wSC~wD-lde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QIWSCCWD-LDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cceeeeec-cCCcceeEEeccCceEEEEEcc
Confidence 346789999999887 78889999999999999999999998887 89999995 3456789999999999999997
Q ss_pred CCCCcceEEeeeecccCCCCCcccceeE--EEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCCCCCCeEEEEEEc
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~--v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~-~v~~i~~~~~~~Vtsl~~~s 1195 (1354)
...+......+ .-...+|..+... -...+.++.++.+..+ ...|++.-... .....+....+...++....
T Consensus 267 ~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 267 QPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred CCCchHhhhhh----hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 64432211100 0011112110000 0011234444444333 45565432210 22223322233344553332
Q ss_pred CCCCEEEEEECC-C------eEEE-EECCCCCeeeEeecCCCCC-CCC--eEEEEE-ecCCCCCEEEEEECCCcEEEEeC
Q 000681 1196 VHGGQLAAGFVD-G------SVRL-YDVRTPDMLVCSTRPHTQQ-VER--VVGISF-QPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1196 ~~g~~L~sgs~D-G------sVrI-wDlr~~~~~~~~~~~~~~h-~~~--I~sv~f-sp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
.. +.++..... - .|-. -|-+.+..+......+.|. ... -+..-+ .++ +.-++.+|.....+.+||.
T Consensus 341 ~s-nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~-nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 341 VS-NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVED-NNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cc-ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccc-ccEEEEecCCcceeEEecc
Confidence 22 333333322 1 0111 1222222111111111010 000 011112 233 2334455666688999999
Q ss_pred CCCCccEEEEecCCCCeEEEEEcC-CC-CEEEEEeCCCcEEEEeC
Q 000681 1264 RNHKDAYLTIDAHRGSLSALAVHR-HA-PIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1264 ~~~~~~v~~l~~h~~~VtsLafsp-dg-~~Lasgs~Dg~I~Iwd~ 1306 (1354)
.+. +.+.++.- +.+|.++.... +| .+|++-+ |..++||..
T Consensus 419 ~s~-evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 419 HSF-EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred chh-heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEec
Confidence 988 67777764 36677666543 23 3666554 456888763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.047 Score=62.76 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=125.3
Q ss_pred EEEecCCCeEEE-EECCC-eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCC
Q 000681 1147 VDWQQQSGYLYA-SGEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPD 1219 (1354)
Q Consensus 1147 v~~sp~~~~Lla-~g~Dg-~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs-----~DGsVrIwDlr~~~ 1219 (1354)
++.+|.....++ +-.-| ...+||..+++ ....+....+.-.+.=..++++|++|++.- ..|.|-|||.+..-
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~-~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQ-LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 566775554444 44444 58899999998 777776544433333346889999999864 45789999999433
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------------------CCcEEEEeCCCCCccEEEEe----cCC
Q 000681 1220 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------------------AGDIQFLDIRNHKDAYLTID----AHR 1277 (1354)
Q Consensus 1220 ~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~------------------DG~I~IWDl~~~~~~v~~l~----~h~ 1277 (1354)
..+.. +..|.-.-..+.+.|+ |+.|+++.. +-.+...|..++ +.+.... .|.
T Consensus 89 ~ri~E---~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 89 RRIGE---FPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQ 162 (305)
T ss_pred EEEeE---ecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccc
Confidence 23333 3344456667888998 877776632 234555666666 4555432 367
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCe
Q 000681 1278 GSLSALAVHRHAPIIASGSAKQ-------LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1349 (1354)
Q Consensus 1278 ~~VtsLafspdg~~Lasgs~Dg-------~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~-Dg~ 1349 (1354)
-.|..+++.++|.+++..-..| .|-+++..+ .+..+.. -......-.+.+-+|++++++..+++.+- -|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 7899999999988776654333 233443322 2333332 11111123467999999999988876665 678
Q ss_pred EEEcC
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 V~IWd 1354 (1354)
+.+||
T Consensus 241 ~~~~d 245 (305)
T PF07433_consen 241 VAVWD 245 (305)
T ss_pred EEEEE
Confidence 88885
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0099 Score=73.93 Aligned_cols=174 Identities=13% Similarity=0.190 Sum_probs=113.6
Q ss_pred eEEEeeCCCcEEEEeCCCCC-CeEEEE-EcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEee---
Q 000681 1023 DLAVSKLNNPIACWDTRFEK-GTKTAL-LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE--- 1097 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~~-~I~sL~-fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s--- 1097 (1354)
.++.+.-+|.+.+.+....- ...+.. -..+|.++++++.||+|.|-...+.+...++.-+. ++.++++.+.
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r----piksial~Pd~~~ 126 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR----PIKSIALHPDFSR 126 (846)
T ss_pred eeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC----cceeEEeccchhh
Confidence 35556666777777766431 111100 03478999999999999999999888887777666 7889998432
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000681 1098 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1177 (1354)
Q Consensus 1098 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v 1177 (1354)
...+.+++||.-| +.++.-.--..+...+ +....+.|.+ +.|. |+.++-+.++| |+|||+.+++ .+
T Consensus 127 ~~sk~fv~GG~ag-lvL~er~wlgnk~~v~-----l~~~eG~I~~----i~W~--g~lIAWand~G-v~vyd~~~~~-~l 192 (846)
T KOG2066|consen 127 QQSKQFVSGGMAG-LVLSERNWLGNKDSVV-----LSEGEGPIHS----IKWR--GNLIAWANDDG-VKVYDTPTRQ-RL 192 (846)
T ss_pred hhhhheeecCcce-EEEehhhhhcCcccee-----eecCccceEE----EEec--CcEEEEecCCC-cEEEeccccc-ee
Confidence 1367899999888 6665432111111111 4555677777 8884 66777777776 9999999988 77
Q ss_pred eeecCCCCC-----CeEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000681 1178 NPIPSSSDC-----SISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217 (1354)
Q Consensus 1178 ~~i~~~~~~-----~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~ 1217 (1354)
..++..+.. .-..+ .|. +...++.|=.| +|+|..++.
T Consensus 193 ~~i~~p~~~~R~e~fpphl-~W~-~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 193 TNIPPPSQSVRPELFPPHL-HWQ-DEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred eccCCCCCCCCcccCCCce-Eec-CCCeEEEecCC-eEEEEEEec
Confidence 666654432 12334 343 34566666554 789998883
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.12 Score=56.83 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=57.5
Q ss_pred EeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1036 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1036 Wd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
|....+.+|.+-+.- -|++++.|...|.+++.+..+|.+...|.... .|.+-+-. ..++.++..|+.|++....
T Consensus 47 We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~~-d~~~glIycgshd~~~yal 120 (354)
T KOG4649|consen 47 WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVKVRAQC-DFDGGLIYCGSHDGNFYAL 120 (354)
T ss_pred eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh----hhccceEE-cCCCceEEEecCCCcEEEe
Confidence 444444555544433 57789999999999999999998888877654 23222222 4699999999999999999
Q ss_pred EccC
Q 000681 1116 KDYD 1119 (1354)
Q Consensus 1116 dl~~ 1119 (1354)
|.++
T Consensus 121 D~~~ 124 (354)
T KOG4649|consen 121 DPKT 124 (354)
T ss_pred cccc
Confidence 9866
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=68.20 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=127.5
Q ss_pred hhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHH
Q 000681 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1354)
Q Consensus 503 fpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~ 582 (1354)
+|-+.--.++...|-|.-+.+-+.-.+....+++ ++++-+|..-.+.+|+..+ +++|.-+|.+|+...+|+|..|..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~~l~~~~--~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLGYLENSD--AELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHHHhcCCc--HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444333344455666777788877777766665 6888899998899998777 599999999999999999999999
Q ss_pred HHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcC--CChHHHHHHHHHH
Q 000681 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSL 660 (1354)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sP~VRaa~v~aL 660 (1354)
.++.++...++..|.. +..-.+|.-+++|++.|+.++..+.....+.+-...|...+++ .++..+.=+++.+
T Consensus 162 v~E~~~L~~Ll~~ls~------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILSS------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHcc------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999983 5556799999999999999999998888777777789999987 6677777788899
Q ss_pred hhcccc
Q 000681 661 GTLLDI 666 (1354)
Q Consensus 661 ~~~i~~ 666 (1354)
+.++..
T Consensus 236 ~~Ll~~ 241 (342)
T KOG2160|consen 236 SLLLQE 241 (342)
T ss_pred HHHHHh
Confidence 998843
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=76.40 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=96.2
Q ss_pred CChhHHHHhhccCchhhhhHHHHHHHHHhhc-ChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcch
Q 000681 501 GIFPYVLKLLQTTTPELRQILVFIWTKILAL-DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG 579 (1354)
Q Consensus 501 gifpyvlklL~s~~~elr~~~~FIwa~i~~~-~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~g 579 (1354)
..||.|+|+++++..|+|.|+ |+.....+. .|. .. ++ ..+.|.+=|++++ |..|+++.=.|+.|-
T Consensus 68 ~LF~dVvk~~~S~d~elKKLv-YLYL~~ya~~~pe-la-lL---aINtl~KDl~d~N--p~IRaLALRtLs~Ir------ 133 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLV-YLYVLSTARLQPE-KA-LL---AVNTFLQDTTNSS--PVVRALAVRTMMCIR------ 133 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHH-HHHHHHHcccChH-HH-HH---HHHHHHHHcCCCC--HHHHHHHHHHHHcCC------
Confidence 359999999999999999984 444443333 221 11 11 1344555555554 688888877776663
Q ss_pred hHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHH
Q 000681 580 QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1354)
Q Consensus 580 q~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~a 659 (1354)
...+-..+...+...|. |++|.||..+++|+.+++...++ ...+.+..+.|..+|+|.+|+|.+.++.+
T Consensus 134 -~~~i~e~l~~~lkk~L~-------D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~a 202 (746)
T PTZ00429 134 -VSSVLEYTLEPLRRAVA-------DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAI 202 (746)
T ss_pred -cHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHH
Confidence 11122233444445566 88999999999999999986654 22344556678889999999999999999
Q ss_pred Hhhccc
Q 000681 660 LGTLLD 665 (1354)
Q Consensus 660 L~~~i~ 665 (1354)
|..+..
T Consensus 203 L~eI~~ 208 (746)
T PTZ00429 203 VCEVND 208 (746)
T ss_pred HHHHHH
Confidence 998863
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0068 Score=75.29 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=113.9
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1153 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1153 ~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
+..++-|+-+|.|++++..... .+...|+.+ ..+|.++++|+.||+|.|..+-+.+. .+.. .+ .
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~-~~~~-df---~ 112 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE-ITQY-DF---K 112 (846)
T ss_pred cceeeeccccceEEEEecCCcc---ccccccccc--------ccCCceEEEecCCCcEEEeeccCCcc-ceeE-ec---C
Confidence 6778888899999999876542 222222221 45799999999999999999888773 3333 22 2
Q ss_pred CCeEEEEEecC---CCCCEEEEEECCCcEEEEeCCCCC--ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q 000681 1233 ERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL- 1306 (1354)
Q Consensus 1233 ~~I~sv~fsp~---~~g~~Lasgs~DG~I~IWDl~~~~--~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~- 1306 (1354)
.++.+|+++|+ ...+.+++|+..| +.++.-+-.+ ..+ .+....|+|.++.|. |.+||-++.+| |+|||+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEecc
Confidence 78999999998 3567899999998 7777654221 122 355567899999995 67898888777 899995
Q ss_pred CCceEEEEeccCCccccccCCCeEEEEEecCCCEEE
Q 000681 1307 EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1342 (1354)
Q Consensus 1307 ~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~La 1342 (1354)
.++.+..+...+.. .........+.|.++.++++
T Consensus 188 ~~~~l~~i~~p~~~--~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQS--VRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred ccceeeccCCCCCC--CCcccCCCceEecCCCeEEE
Confidence 45666666552321 11122345677776654443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00017 Score=86.61 Aligned_cols=209 Identities=14% Similarity=0.179 Sum_probs=127.5
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----CCCeEE
Q 000681 1042 KGTKTALLQP--FSPIVVAADENERIKIWNYEEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVAS----CNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fsp--dg~~Latgs~Dg~I~IWd~~tg~~l--~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs----~DG~Ir 1113 (1354)
..+.|+++.. +..++++|..+|.|.+-......-- ....++. ...++++|. +.|.+.|++|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---r~Ct~lAwn-eLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---RPCTSLAWN-ELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---ccccccccc-cccHHHHHhhhhhhcccCCcc
Confidence 4566777544 4458999999999999876533211 1122333 678899994 56778888874 356799
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEE
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
|||+.+.-..+. ..+.-..+......+ ++|..+...+++|...+.++++|++........+.. . .+..++.
T Consensus 133 Iwdi~s~ltvPk--e~~~fs~~~l~gqns----~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLTVPK--ESPLFSSSTLDGQNS----VCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITV 203 (783)
T ss_pred ceecccccCCCc--cccccccccccCccc----cccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hccccee
Confidence 999976311111 111111112222333 888877777888888889999999843312333322 1 2555533
Q ss_pred EcCCCCEEEEEECCCeEEEEE-CCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCC
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYD-VRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRN 1265 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwD-lr~~~~~~~~~~~~~-~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~ 1265 (1354)
.+-.++++++-. ||.|.+|| .++-+..+....... .....+..++|.|.. ...+++.+ ..++|+++|+..
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-cchhhhhccCcceEEEecccc
Confidence 333677777655 99999999 555443433331111 112358999999984 44555555 458899999874
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.16 Score=59.29 Aligned_cols=262 Identities=15% Similarity=0.176 Sum_probs=155.5
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEe----------CCCeEEEEEccCCCCcceEEeeeec
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs----------~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
+.+.|+|.++++.+..+...- .-.+.. +++++.+++++ ..-.|.+||..+..-..++.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----- 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----- 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----
Confidence 479999999999888877644 223455 68999988754 23469999997743333333
Q ss_pred ccCC-CCCc-ccceeEEEEecCCCeEEEEE--CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC
Q 000681 1133 IQGH-KPGV-RCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1208 (1354)
Q Consensus 1133 l~~h-~~~V-~si~~~v~~sp~~~~Lla~g--~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG 1208 (1354)
++.. ...+ .... .+..+.+++++++.. -...|.|.|+...+ .+.++... . +..+ ++..++-|.+-|.||
T Consensus 85 iP~k~R~~~~~~~~-~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~P--G-C~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 85 IPPKPRAQVVPYKN-MFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTP--G-CWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp ETTS-B--BS--GG-GEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGT--S-EEEE--EEEETTEEEEEETTS
T ss_pred cCCcchheeccccc-ceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCC--C-EEEE--EecCCCceEEEecCC
Confidence 2221 1111 1111 267778888888874 45679999999998 78777652 2 3333 333456799999999
Q ss_pred eEEEEECC-CCCeeeEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEeCCCCC-ccEEEEecC---------
Q 000681 1209 SVRLYDVR-TPDMLVCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH--------- 1276 (1354)
Q Consensus 1209 sVrIwDlr-~~~~~~~~~~~~~~h~~~I~-sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~-~~v~~l~~h--------- 1276 (1354)
++.-..+. .++...+..+.+.....++. .-.+... +..++--+.+|.|+--|+.... .....+..-
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 99999888 44432221112211122222 3334444 5566668889999999987653 112222211
Q ss_pred -CCCeEEEEEcCCCCEEEEE---eC-----CC--cEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCC-EEEE
Q 000681 1277 -RGSLSALAVHRHAPIIASG---SA-----KQ--LIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAA 1343 (1354)
Q Consensus 1277 -~~~VtsLafspdg~~Lasg---s~-----Dg--~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~-~Las 1343 (1354)
.+.-.-+++|+....|..- +. |+ .|.+|| .+++.+.++.. ...+.+|+.+.+.+ +|.+
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEE
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEE
Confidence 1234457888766544432 11 22 366667 45777887764 13577999998885 5544
Q ss_pred EE-CCCeEEEcC
Q 000681 1344 GS-ADACVSIHS 1354 (1354)
Q Consensus 1344 gs-~Dg~V~IWd 1354 (1354)
.+ .++.+.|||
T Consensus 307 ~~~~~~~l~v~D 318 (342)
T PF06433_consen 307 LSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEe
Confidence 44 478999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=61.18 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCC
Q 000681 590 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 669 (1354)
Q Consensus 590 ~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 669 (1354)
+.+++.|.+ +++|.+|..++.+||++... .+...|..+++|+.|.||.+++.+||.+=
T Consensus 2 ~~L~~~l~~------~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 2 PALLQLLQN------DPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHT------SSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 467777732 89999999999999976432 23457888999999999999999999872
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhhhc-cCCChhhhHHHHHHHH
Q 000681 670 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVV-SDGSPLVRAEVAVALA 717 (1354)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~-~D~sp~VR~e~~~~l~ 717 (1354)
....+..|..++ .|....||.+++.+|+
T Consensus 60 --------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 112334555544 4567888999988875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.096 Score=64.24 Aligned_cols=216 Identities=16% Similarity=0.140 Sum_probs=114.8
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEE
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~V 1167 (1354)
....+.+ +|+|++++++ .||...|+.... ... .....+....|.. .+.+++-...+.|.|
T Consensus 34 ~p~~ls~--npngr~v~V~-g~geY~iyt~~~--~r~--------------k~~G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 34 YPQSLSH--NPNGRFVLVC-GDGEYEIYTALA--WRN--------------KAFGSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp --SEEEE---TTSSEEEEE-ETTEEEEEETTT--TEE--------------EEEEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CCeeEEE--CCCCCEEEEE-cCCEEEEEEccC--Ccc--------------cccCceeEEEEec-CccEEEEECCCeEEE
Confidence 4567788 7899999985 577777776322 110 0112223478887 666777777888999
Q ss_pred EECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000681 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1247 (1354)
Q Consensus 1168 WDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~ 1247 (1354)
+.--++. ....++... .+..| +. |..|...+. +.|.+||+.+++ .++.+. . ..|..+.|+++ |.
T Consensus 94 ~kn~~~~-~~k~i~~~~--~~~~I-f~---G~LL~~~~~-~~i~~yDw~~~~-~i~~i~-v----~~vk~V~Ws~~--g~ 157 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLPF--SVEKI-FG---GNLLGVKSS-DFICFYDWETGK-LIRRID-V----SAVKYVIWSDD--GE 157 (443)
T ss_dssp EETTEE--TT-----SS---EEEE-E----SSSEEEEET-TEEEEE-TTT---EEEEES-S-----E-EEEEE-TT--SS
T ss_pred EEcCccc-cceEEcCCc--ccceE-Ec---CcEEEEECC-CCEEEEEhhHcc-eeeEEe-c----CCCcEEEEECC--CC
Confidence 7433333 334444422 26777 33 776666654 489999999998 555552 2 34899999999 99
Q ss_pred EEEEEECCCcEEEEeCCCC----------CccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEecc
Q 000681 1248 KIVSASQAGDIQFLDIRNH----------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYH 1317 (1354)
Q Consensus 1248 ~Lasgs~DG~I~IWDl~~~----------~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~ 1317 (1354)
+++..+.+ .+.|++.+.. ...+..+..-...|.+..|..+ .++-.+.. .|+- +-+.....+..
T Consensus 158 ~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~- 230 (443)
T PF04053_consen 158 LVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH- 230 (443)
T ss_dssp EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-
T ss_pred EEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE-
Confidence 99888755 6777775422 0134444443567888888876 33333333 5665 23333344433
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1318 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1318 h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
-+ .++.=+.+.+....+.....|+.|..+
T Consensus 231 ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 231 LD-------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -S-------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred cC-------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 22 466777788877788888888877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0095 Score=72.38 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=60.9
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1231 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1231 h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
..+.+.+++++|+ ...++.|+.||.|.+||...+ +.......-..+.++|||+|.++++|+..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPS--EDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcc--cceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 3478999999999 999999999999999998765 22233344567899999999999999999999999953
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.089 Score=64.55 Aligned_cols=220 Identities=12% Similarity=0.106 Sum_probs=114.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..+..+.++|+|+++++++ +|.-.|+.....+... +. .-...+| .. .+.+++-...++|.|+......
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-~G-------~g~~~vw--~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-FG-------SGLSFVW--SS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-EE-------E-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-cC-------ceeEEEE--ec-CccEEEEECCCeEEEEEcCccc
Confidence 4588999999999999966 8888898844333322 21 2235566 44 5557777778899997653311
Q ss_pred CcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEE
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L 1201 (1354)
....+. +. ..+.. + | .|..|.+.+ ++.|.+||+.+++ .++.+... +|..+ .|+++|+++
T Consensus 101 ~~k~i~-----~~---~~~~~----I-f--~G~LL~~~~-~~~i~~yDw~~~~-~i~~i~v~---~vk~V-~Ws~~g~~v 159 (443)
T PF04053_consen 101 VVKSIK-----LP---FSVEK----I-F--GGNLLGVKS-SDFICFYDWETGK-LIRRIDVS---AVKYV-IWSDDGELV 159 (443)
T ss_dssp TT----------S---S-EEE----E-E---SSSEEEEE-TTEEEEE-TTT---EEEEESS----E-EEE-EE-TTSSEE
T ss_pred cceEEc-----CC---cccce----E-E--cCcEEEEEC-CCCEEEEEhhHcc-eeeEEecC---CCcEE-EEECCCCEE
Confidence 111111 11 01222 1 1 145555544 4589999999999 89988853 27888 888999999
Q ss_pred EEEECCCeEEEEECCCC----------CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEE
Q 000681 1202 AAGFVDGSVRLYDVRTP----------DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1202 ~sgs~DGsVrIwDlr~~----------~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~ 1271 (1354)
+..+.+ ++.+++.... +......... ...|.+..|..+ .++-.+.. .|+. +-++ ...
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d----~fiYtT~~-~lkY--l~~G--e~~ 226 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED----CFIYTTSN-HLKY--LVNG--ETG 226 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT----EEEEE-TT-EEEE--EETT--EEE
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC----EEEEEcCC-eEEE--EEcC--Ccc
Confidence 988765 6777775543 0012222111 257888888633 55555444 6665 3333 333
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 000681 1272 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1272 ~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
++..-..++.=+.+.+..+.+.....|+.|..+.++
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 343334566667777766677777777777777644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.16 Score=61.57 Aligned_cols=246 Identities=11% Similarity=0.129 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceE-------------------------------------------EEe
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------------------------------------NSF 1079 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l-------------------------------------------~~~ 1079 (1354)
.|+.+.|.++..-|++|...|.|.||.+...+.- .-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4677777777777777777777777765422111 111
Q ss_pred eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccC------CCCCcccceeEEE-EecC
Q 000681 1080 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG------HKPGVRCSNVVVD-WQQQ 1152 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~------h~~~V~si~~~v~-~sp~ 1152 (1354)
.... +.|++++. .|-.+++.|..+|.+.|.|++. ...+.. ..+.. ....++++.+.+. +..+
T Consensus 83 ~~~~---g~vtal~~---S~iGFvaigy~~G~l~viD~RG---PavI~~--~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 83 DAKQ---GPVTALKN---SDIGFVAIGYESGSLVVIDLRG---PAVIYN--ENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp ---S----SEEEEEE----BTSEEEEEETTSEEEEEETTT---TEEEEE--EEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred eccC---CcEeEEec---CCCcEEEEEecCCcEEEEECCC---CeEEee--ccccccccccccccCeeEEEEEEEecCCC
Confidence 1222 78999988 4788999999999999999943 222221 11222 2223444322221 2222
Q ss_pred C---CeEEEEECCCeEEEEECCC---Cceee--eeecCCCCCCeEEEEEEcCC-C-------------------CEEEEE
Q 000681 1153 S---GYLYASGEVSSIMLWDLEK---EQQMV--NPIPSSSDCSISALTASQVH-G-------------------GQLAAG 1204 (1354)
Q Consensus 1153 ~---~~Lla~g~Dg~I~VWDl~t---~~~~v--~~i~~~~~~~Vtsl~~~s~~-g-------------------~~L~sg 1204 (1354)
+ -.+++|.+.|.+.+|.+.- +.-.+ .........+|..|..+..+ | .-++..
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 2 3578888999999998751 11011 11111233457777555322 1 134555
Q ss_pred ECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec---CCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC----
Q 000681 1205 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP---GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR---- 1277 (1354)
Q Consensus 1205 s~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp---~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~---- 1277 (1354)
+.+..+|++..-+.+...+.++. ......+.+-+ ...+..|++-..+|.|++|.+-.- +.+..+....
T Consensus 232 vSe~~irv~~~~~~k~~~K~~~~----~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~ 306 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSFDD----PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDS 306 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE-SS-----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---H
T ss_pred EcccceEEEeCCCCcccceeecc----ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCcccc
Confidence 56788999999887755555421 12233334421 012778999999999999999887 4666665432
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1278 GSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1278 ~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
..+....++++|.+++-.+. ..+.++.
T Consensus 307 ~~~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred ccccccEECCCCCEEEEeCc-ccEEEEE
Confidence 23456677888887766543 3344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.023 Score=71.22 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=176.3
Q ss_pred HHHHhcCCCCCCCCCcchhhHHHHhhchhhhhHHHH--HHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHH
Q 000681 446 FEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF 523 (1354)
Q Consensus 446 fe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rlral~--ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~F 523 (1354)
++.+|+......--|...|++.+.|.++...+|.+. .++|.+.-..-++.++.+.++++.++..|.++..+....++=
T Consensus 62 L~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~ 141 (503)
T PF10508_consen 62 LKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIK 141 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHH
Confidence 555555433222235677888888988888888775 567888777777888889999999999999998888888999
Q ss_pred HHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCC
Q 000681 524 IWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 603 (1354)
Q Consensus 524 Iwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~ 603 (1354)
++.++....+.. ..++..++...+.+.+...+.....|... ++..+...-+..-..|.+.|+++.++..|.
T Consensus 142 ~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e--l~v~i~~~S~~~~~~~~~sgll~~ll~eL~------ 212 (503)
T PF10508_consen 142 ALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYE--LLVEIASHSPEAAEAVVNSGLLDLLLKELD------ 212 (503)
T ss_pred HHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHH--HHHHHHhcCHHHHHHHHhccHHHHHHHHhc------
Confidence 999998865444 45878888777777776533223444333 466677888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhh--ccccCCCCCCCCCCCCCCC
Q 000681 604 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT--LLDIGFDSCRDGVEGDEEC 681 (1354)
Q Consensus 604 ~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~--~i~~~~~~~~~~~~~~~~~ 681 (1354)
+.+.+||.-++=+|+.|-. .+.+-.+-.+.++..+|..++.+..-.-|-..++..|. |.+.-. ..
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la-----------~~ 279 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA-----------RV 279 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH-----------hc
Confidence 7899999999999999999 55666666888999999999864432214444444444 222100 00
Q ss_pred ChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHhhhh
Q 000681 682 DDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQ 725 (1354)
Q Consensus 682 ~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~~~~ 725 (1354)
...+....=..+...+..+.....+..+.-++-.++.+...-++
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 01111111123344555666666676666666566655444333
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0011 Score=56.61 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhc
Q 000681 608 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1354)
Q Consensus 608 P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1354)
|.||..++.+||.+.+..++.-.. .-..+...|..+|+|+++.||.+++.+||.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987665544322 4455556888999999999999999999964
|
... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.24 Score=58.51 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=127.3
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEeC----------CCeEEEEEccCC-C--Ccc
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASC----------NGNIRIWKDYDQ-K--DKQ 1124 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d-----~~~L~tgs~----------DG~IrIWdl~~~-~--~~~ 1124 (1354)
..|++.|..+.+.+.++.-.. ...+++++...-.+ ..+|++|+. .|.|.++++... . .+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 358888888887777665433 24666666543222 567887753 288999999763 1 122
Q ss_pred eEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEE
Q 000681 1125 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1204 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sg 1204 (1354)
+++. -....++|.++ ..+ ++.++++. .+.|.+|++...+.....-..+....++++... ++++++|
T Consensus 80 ~~i~----~~~~~g~V~ai---~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 80 KLIH----STEVKGPVTAI---CSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEE----EEEESS-EEEE---EEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEE
T ss_pred EEEE----EEeecCcceEh---hhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEE
Confidence 2221 12234556662 222 55655544 478999998876512222222223358888554 6799999
Q ss_pred ECCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC------Cc-cE-EEEec
Q 000681 1205 FVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH------KD-AY-LTIDA 1275 (1354)
Q Consensus 1205 s~DGsVrIwDlr~~~~-~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~------~~-~v-~~l~~ 1275 (1354)
.....|.++..+.... +....+. ....+++++.+-++ ++.++.+..+|.|.++..... +. .+ ....-
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f 221 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVD--EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF 221 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-S--SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE
T ss_pred EcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecC--CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE
Confidence 9999999886554322 3222222 22467999999877 569999999999999987631 11 12 12222
Q ss_pred C-CCCeEEE---EEcC--CC------CEEEEEeCCCcEEEE
Q 000681 1276 H-RGSLSAL---AVHR--HA------PIIASGSAKQLIKVF 1304 (1354)
Q Consensus 1276 h-~~~VtsL---afsp--dg------~~Lasgs~Dg~I~Iw 1304 (1354)
| ...|+++ .+.| .+ ..++.++.+|.|.+.
T Consensus 222 ~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 222 HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 2 3457777 4444 12 247778888888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=61.74 Aligned_cols=246 Identities=14% Similarity=0.167 Sum_probs=126.8
Q ss_pred CeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------eEE--------------eeee
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ----------------------KLV--------------TAFS 1131 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~----------------------~lv--------------s~~~ 1131 (1354)
.|+.+.| ..+..-|++|...|.|.||.....+... ++. .+..
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 5888898 6788899999999999999874421110 010 0001
Q ss_pred cccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-------cCCCCCCeEEEEEE----cCCC--
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-------PSSSDCSISALTAS----QVHG-- 1198 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i-------~~~~~~~Vtsl~~~----s~~g-- 1198 (1354)
.+....+.|++ ++.+ +=+.+++|..+|.+.|.|++... .+..- .......|+++.|. ..++
T Consensus 81 l~~~~~g~vta----l~~S-~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 81 LLDAKQGPVTA----LKNS-DIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EE---S-SEEE----EEE--BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred heeccCCcEeE----EecC-CCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 11122344444 4444 67899999999999999998776 55431 22234457777332 2233
Q ss_pred -CEEEEEECCCeEEEEECCC--CC-eeeEeecCCCCCCCCeEEEE-EecC------------------CCCCEEEEEECC
Q 000681 1199 -GQLAAGFVDGSVRLYDVRT--PD-MLVCSTRPHTQQVERVVGIS-FQPG------------------LDPAKIVSASQA 1255 (1354)
Q Consensus 1199 -~~L~sgs~DGsVrIwDlr~--~~-~~~~~~~~~~~h~~~I~sv~-fsp~------------------~~g~~Lasgs~D 1255 (1354)
-.+++|+..|.+.+|.+-- +. -.+........+.+.|..+. ++.+ ..-+-++....+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3788999999999998862 11 11111111123456666665 3221 001224444557
Q ss_pred CcEEEEeCCCCCccEEEEecCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEeCCC-ceEEEEeccCCccccccCCCe
Q 000681 1256 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV-----HRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1256 G~I~IWDl~~~~~~v~~l~~h~~~VtsLaf-----spdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
..|+++...+.+...+.+ ...-....+.+ ...+..|++-..+|.|++|.+-+ +.+..++. .... ....+
T Consensus 235 ~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l-~~~~---d~~~~ 309 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL-PPPL---DSRRL 309 (395)
T ss_dssp SEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--SS------HHHH
T ss_pred cceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC-CCcc---ccccc
Confidence 789999988774333344 22122233444 23566888889999999999653 55555554 2211 11234
Q ss_pred EEEEEecCCCEEEEEEC
Q 000681 1330 NCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1330 ~sLafspdg~~Lasgs~ 1346 (1354)
....|+++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 45667888887766543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00057 Score=77.19 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhccC-CCceEEEEEcCCCCCCCCC-CceEEEecCCCC
Q 000681 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA-KGERVLFHYNGHGVPKPTA-NGEIWLFNKSYT 219 (1354)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~-~~~r~lfhy~ghg~p~pt~-~g~i~~~~~~~~ 219 (1354)
+.+=.+.+.+.| +.+ .+... .. ...|||.+++++.+..+-+.+ +.+.++|||-|||...+.. .+++-.++..
T Consensus 20 ~~~D~~~~~~~L-~~~-gf~~~-~~-l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~-- 93 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKL-GFDVE-NI-LIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGY-- 93 (248)
T ss_dssp HHHHHHHHHHHH-HHT-TEEEE-EE-EEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSE--
T ss_pred HHHHHHHHHHHH-HHc-CCcee-ec-cccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccccCCccCcccccccce--
Confidence 344455666666 222 11111 11 356999999999988886655 6889999999999775432 3444444322
Q ss_pred eeeecc----hHhhhhhcC------CCeEEEEeCCchhhHHHHHHhhcccC-----------------CCCCCCCCcceE
Q 000681 220 QYIPLP----ISDLDSWLK------TPSIYVFDCSAAGMIVNAFIELHDWG-----------------ASNYSGSTRDCI 272 (1354)
Q Consensus 220 ~y~p~~----~~~l~~~~~------~p~~~v~dc~~ag~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 272 (1354)
.+|+. +.+.+..+- .|-++|+||..+|.+........... .........+.+
T Consensus 94 -~~~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (248)
T PF00656_consen 94 -LLPLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFI 172 (248)
T ss_dssp -EEEHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEE
T ss_pred -eeecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcE
Confidence 24654 344333332 34599999999999877653321110 001123566889
Q ss_pred EEEecCCCCCCCCCCCCCchhhhhcccchH
Q 000681 273 LLAACEAHETLPQSEEFPADVFTSCLTTPI 302 (1354)
Q Consensus 273 ~~~ac~~~e~lp~~~~lp~D~ftscl~tP~ 302 (1354)
+++||..+|.---.+....=+||-.|..=+
T Consensus 173 ~~~as~~~~~s~e~~~~~~g~ft~~L~~~L 202 (248)
T PF00656_consen 173 VLSASRPGQTSYEDSPGSGGLFTYALLEAL 202 (248)
T ss_dssp EEESSSTTBCEEEECTTTEEHHHHHHHHHH
T ss_pred EEEeccccceeecccCccCHHHHHHHHHHH
Confidence 999999999888887788889998886433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.19 Score=62.95 Aligned_cols=239 Identities=11% Similarity=0.067 Sum_probs=138.4
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC----CeEEEEEccCCCCc
Q 000681 1049 LQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GNIRIWKDYDQKDK 1123 (1354)
Q Consensus 1049 fspdg~~Lat-gs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D----G~IrIWdl~~~~~~ 1123 (1354)
++|||+.+.. .-..+.+.+.|.++.+...++.... ....+.+ ++++.++++.+.+ +++..-+..+ ..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~--spdGk~afvTsyNsE~G~tl~em~a~e--~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDT--DYDGKYAFSTCYNSEEGVTLAEMMAAE--RD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceE--CCCCCEEEEeccCcccCcceeeecccc--Cc
Confidence 4556654432 2244567777877766666655433 2344566 5788888877632 1222222211 11
Q ss_pred ceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCC-----CceeeeeecCCCCCCeEEEEEEcCCC
Q 000681 1124 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-----EQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1124 ~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t-----~~~~v~~i~~~~~~~Vtsl~~~s~~g 1198 (1354)
...+-.+. .+ -.+.+++.+..+ .++.|.+.|.++ .. .+..++.... ...+ ..+|+|
T Consensus 272 ~~vvfni~-------~i------ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGKs--PHGV-~vSPDG 332 (635)
T PRK02888 272 WVVVFNIA-------RI------EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPKN--PHGV-NTSPDG 332 (635)
T ss_pred eEEEEchH-------HH------HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCCC--ccce-EECCCC
Confidence 11110000 00 122235666655 367899999998 44 6677776443 5777 678999
Q ss_pred CEEEEEE-CCCeEEEEECCCCCe-----------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000681 1199 GQLAAGF-VDGSVRLYDVRTPDM-----------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1266 (1354)
Q Consensus 1199 ~~L~sgs-~DGsVrIwDlr~~~~-----------~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~ 1266 (1354)
+++++++ .+.+|.|+|+.+.+. ++...+. ...-...+|.++ |....|-..|..|..||+...
T Consensus 333 kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~--G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 333 KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGR--GNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCC--CCEEEeEeecceeEEEehHHH
Confidence 9876655 589999999987552 1111111 133446778777 888888899999999998751
Q ss_pred ---------CccEEEEecCCCCeE-----EEEEcCCCCEEEEEe---CCC----------cEEEEeCCCceEEEEeccCC
Q 000681 1267 ---------KDAYLTIDAHRGSLS-----ALAVHRHAPIIASGS---AKQ----------LIKVFSLEGEQLGTIRYHHP 1319 (1354)
Q Consensus 1267 ---------~~~v~~l~~h~~~Vt-----sLafspdg~~Lasgs---~Dg----------~I~Iwd~~g~~l~~i~~~h~ 1319 (1354)
...+..+..|-.+.. .=.-.++|++|++.. .|+ .-.+.|++|+.+.-+.. +.
T Consensus 407 ~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d-~p 485 (635)
T PRK02888 407 IRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD-GP 485 (635)
T ss_pred HHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec-CC
Confidence 123444444433221 112367889888864 343 23567778887777655 44
Q ss_pred cc
Q 000681 1320 SF 1321 (1354)
Q Consensus 1320 ~f 1321 (1354)
.|
T Consensus 486 ~~ 487 (635)
T PRK02888 486 TF 487 (635)
T ss_pred CC
Confidence 33
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.24 Score=61.51 Aligned_cols=120 Identities=14% Similarity=0.241 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCC
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD 1122 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~ 1122 (1354)
.|.--++.-.+++++.|+..|.+++|+-..++....-.... ..++++.-+ +.+..+++.|+..|.|.|+.+.....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc---cceEEEEEe-cchhHhhhhhcCCceEEeehhhccCC
Confidence 34555667788999999999999999988765543322222 345554444 67888889999999999998866221
Q ss_pred -cceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCC
Q 000681 1123 -KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1172 (1354)
Q Consensus 1123 -~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t 1172 (1354)
....++. .-..|...|++ ++|++++..+++|...|+|..-.+.+
T Consensus 111 ~~~~~~t~--~d~~~~~rVTa----l~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTP--CDKSHKCRVTA----LEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Ccceeecc--ccccCCceEEE----EEecccccEEeecCCCceEEEEEech
Confidence 2222211 12236777777 99999999999999999998888776
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.03 Score=69.51 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=139.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC-
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ- 1120 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~- 1120 (1354)
-.+++++|||..-.|+.|-.-|.+.+|...+.+.-.....|. ..|..+.| +++|+.|+|+..-|.|.+|.....
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~---a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP---APIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC---CCceeEEe--cCCCCeEEEcCCCceeEEEEeeecc
Confidence 457789999999999999999999999998877777777788 89999999 799999999999999999987421
Q ss_pred -----------CCcceEEeeeecccC-------CCCCcc----cceeEEEE-------------ecCCCeEEEEECCCeE
Q 000681 1121 -----------KDKQKLVTAFSSIQG-------HKPGVR----CSNVVVDW-------------QQQSGYLYASGEVSSI 1165 (1354)
Q Consensus 1121 -----------~~~~~lvs~~~~l~~-------h~~~V~----si~~~v~~-------------sp~~~~Lla~g~Dg~I 1165 (1354)
-++.....+++--.. ....|. .+.....| .++|..+++++.+|+|
T Consensus 135 ~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtV 214 (1416)
T KOG3617|consen 135 EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTV 214 (1416)
T ss_pred ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceE
Confidence 011111112211100 000000 00000112 2456778888999999
Q ss_pred EEEECCCCceeeeeecCC---------CCCCeEEEEEEcCCCCEEE-----------------EEECCCeEEEEECCCCC
Q 000681 1166 MLWDLEKEQQMVNPIPSS---------SDCSISALTASQVHGGQLA-----------------AGFVDGSVRLYDVRTPD 1219 (1354)
Q Consensus 1166 ~VWDl~t~~~~v~~i~~~---------~~~~Vtsl~~~s~~g~~L~-----------------sgs~DGsVrIwDlr~~~ 1219 (1354)
+-.|-.... ....+.. ....|.++..+-.+.-+++ .|+..|.|-+=.-. +
T Consensus 215 yyvdq~g~~--~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-G- 290 (1416)
T KOG3617|consen 215 YYVDQNGRQ--RTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-G- 290 (1416)
T ss_pred EEEcCCCcE--EEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-c-
Confidence 888854332 2222211 1111333311111100000 11112221111100 0
Q ss_pred eeeEeecC-CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC------ccEEEEec---CCCCeEEEEEcCCC
Q 000681 1220 MLVCSTRP-HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDA---HRGSLSALAVHRHA 1289 (1354)
Q Consensus 1220 ~~~~~~~~-~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~------~~v~~l~~---h~~~VtsLafspdg 1289 (1354)
+.+.-.. .......++++++... +..++.|...|.+.+|---..+ ....++.+ -.+.|+.+.|.|-.
T Consensus 291 -vLr~~eKyg~e~ge~~~c~cY~~~--~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k 367 (1416)
T KOG3617|consen 291 -VLRKSEKYGLELGEGILCMCYGEK--EIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIK 367 (1416)
T ss_pred -cccCCcchhhhcCCceEEEEEecc--ceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecccc
Confidence 0000000 0012367999999988 8899999999999999633211 12233332 35689999999876
Q ss_pred CEEEEEeC
Q 000681 1290 PIIASGSA 1297 (1354)
Q Consensus 1290 ~~Lasgs~ 1297 (1354)
+.++.-+.
T Consensus 368 ~~~avn~~ 375 (1416)
T KOG3617|consen 368 STAAVNTE 375 (1416)
T ss_pred chhhhhhh
Confidence 66555444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.088 Score=62.14 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=110.5
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCC------CCEEEEEEC----------CCeEEEEECCCC----Ceee
Q 000681 1163 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH------GGQLAAGFV----------DGSVRLYDVRTP----DMLV 1222 (1354)
Q Consensus 1163 g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~------g~~L~sgs~----------DGsVrIwDlr~~----~~~~ 1222 (1354)
..|++.|..+.+ .+..+.-.....++++..+.-. ..++++|+. .|.|.+|++... ..+.
T Consensus 2 s~i~l~d~~~~~-~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFE-VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSS-EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCe-EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 358899988887 7777665555557777555422 467777764 289999999984 1222
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC--CCeEEEEEcCCCCEEEEEeCCCc
Q 000681 1223 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR--GSLSALAVHRHAPIIASGSAKQL 1300 (1354)
Q Consensus 1223 ~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~--~~VtsLafspdg~~Lasgs~Dg~ 1300 (1354)
... . ....++|++++--. +. |+++. ++.|.+|++...+ .+.....+. ..++++... +++|+.|..-+.
T Consensus 81 ~i~-~-~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s 150 (321)
T PF03178_consen 81 LIH-S-TEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS 150 (321)
T ss_dssp EEE-E-EEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred EEE-E-EeecCcceEhhhhC---CE-EEEee-cCEEEEEEccCcc-cchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence 221 1 12358899988763 34 44443 4799999998873 233222222 355555554 569999998888
Q ss_pred EEEEe--CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1301 IKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1301 I~Iwd--~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
|.++. .++..+..+.. .. ....++++.|-+++..++++..+|.|.++
T Consensus 151 v~~~~~~~~~~~l~~va~-d~-----~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVAR-DY-----QPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEEEEETTTE-EEEEEE-ES-----S-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEEEEEEccCCEEEEEEe-cC-----CCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 88875 44555555543 11 13468899998777799999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0057 Score=75.09 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=83.4
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEE
Q 000681 1234 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1313 (1354)
Q Consensus 1234 ~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~ 1313 (1354)
.|.--++... +++++.|+.-|.+++|+-..+........+..+.+..+.+|++..++|.|+..|.|.++-+.......
T Consensus 35 ~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred eEEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3433444455 88999999999999999776633333333455677788899999999999999999999854322222
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000681 1314 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352 (1354)
Q Consensus 1314 i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~I 1352 (1354)
..+ -..+-..|...|++++|+++++.+.+|...|+|..
T Consensus 113 ~~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 113 LDY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred cee-eccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 111 11111235789999999999999999999998864
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.64 Score=54.32 Aligned_cols=224 Identities=12% Similarity=0.141 Sum_probs=127.5
Q ss_pred CCcEEEEeCCCCCC-----------------eEEEEEcCCCCEEEEEE--CCCcEEEEECCCCceEEEeeCCCCCCCCeE
Q 000681 1030 NNPIACWDTRFEKG-----------------TKTALLQPFSPIVVAAD--ENERIKIWNYEEDTLLNSFDNHDFPDKGIS 1090 (1354)
Q Consensus 1030 d~~I~iWd~~~~~~-----------------I~sL~fspdg~~Latgs--~Dg~I~IWd~~tg~~l~~~~~h~~~~~~It 1090 (1354)
.+.|.+||.++-.. ...+.++.||+++.+.. --..|.|-|++.++.+..+....
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------- 138 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------- 138 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------
Confidence 34788899887511 22356777777666643 34568888888888888777654
Q ss_pred EEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEEC
Q 000681 1091 KLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170 (1354)
Q Consensus 1091 sL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl 1170 (1354)
|....+..+ .-+.+-|.||.+.-..+.. .|+.... .-..+.....++.. .-.+...++.++-.+.+|.|+--|+
T Consensus 139 C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~-~Gk~~~~-~t~~F~~~~dp~f~---~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 139 CWLIYPSGN-RGFSMLCGDGSLLTVTLDA-DGKEAQK-STKVFDPDDDPLFE---HPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EEEEEEEET-TEEEEEETTSCEEEEEETS-TSSEEEE-EEEESSTTTS-B-S-----EEETTTTEEEEEBTTSEEEEEEE
T ss_pred EEEEEecCC-CceEEEecCCceEEEEECC-CCCEeEe-eccccCCCCccccc---ccceECCCCeEEEEecCCEEEEEec
Confidence 222234333 4577888999999888865 3443322 21223222222222 1344556666766788888888888
Q ss_pred CCCce-eeeeecC-----------CCCCCeEEEEEEcCCCCEEEEEE--CCC-------eEEEEECCCCCeeeEeecCCC
Q 000681 1171 EKEQQ-MVNPIPS-----------SSDCSISALTASQVHGGQLAAGF--VDG-------SVRLYDVRTPDMLVCSTRPHT 1229 (1354)
Q Consensus 1171 ~t~~~-~v~~i~~-----------~~~~~Vtsl~~~s~~g~~L~sgs--~DG-------sVrIwDlr~~~~~~~~~~~~~ 1229 (1354)
..... ....+.. ..+..+.++ ....+++++.-. .+| .|-+||+.+++.+.+.- ..
T Consensus 213 sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~ 288 (342)
T PF06433_consen 213 SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LE 288 (342)
T ss_dssp TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EE
T ss_pred cCCcccccCcccccCccccccCcCCcceeeeee--ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CC
Confidence 76551 1122211 012223332 333444433321 122 48888999988554432 21
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCccEEEEec
Q 000681 1230 QQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1230 ~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~~~~~v~~l~~ 1275 (1354)
..+.+|.++.+ ....|++.+ .++.+.+||..++ +.+.++..
T Consensus 289 ---~~~~Si~Vsqd-~~P~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 289 ---HPIDSIAVSQD-DKPLLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp ---EEESEEEEESS-SS-EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred ---CccceEEEccC-CCcEEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 45779999988 556776655 5799999999998 57777764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.096 Score=65.40 Aligned_cols=89 Identities=6% Similarity=-0.046 Sum_probs=60.2
Q ss_pred CcEEEEeCCC----CCccEEEEecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCce-------------EEEEecc
Q 000681 1256 GDIQFLDIRN----HKDAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-------------LGTIRYH 1317 (1354)
Q Consensus 1256 G~I~IWDl~~----~~~~v~~l~~h~~~VtsLafspdg~~Lasg-s~Dg~I~Iwd~~g~~-------------l~~i~~~ 1317 (1354)
+.|.+.|.++ +...+..+. -......++++|||++++++ ..+.+|.|+|++... ..++.-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4577777776 223444443 23456889999999976655 458899999965322 122211
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1318 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1318 h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
.-.....+|.++|....+-..|..|-.|+
T Consensus 374 --------GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 374 --------GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred --------CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 12345678999998888888899999996
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.39 Score=54.42 Aligned_cols=210 Identities=12% Similarity=0.081 Sum_probs=112.8
Q ss_pred EeCCCC-CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEE
Q 000681 1036 WDTRFE-KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1036 Wd~~~~-~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~Ir 1113 (1354)
|....- ..++.|+|+|+.. ++++.+..+.|..++.+ |+.++++.-.. .+..-+|++. .++.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g--~~D~EgI~y~--g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG--FGDYEGITYL--GNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS---SSEEEEEE---STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC--CCCceeEEEE--CCCEEEEEEcCCCcEE
Confidence 444432 4599999999766 66677777888888864 88888876443 1467889984 5666666665689999
Q ss_pred EEEccCCCCcceE--Eeeee--cccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCC---Cceeee--e---ec
Q 000681 1114 IWKDYDQKDKQKL--VTAFS--SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---EQQMVN--P---IP 1181 (1354)
Q Consensus 1114 IWdl~~~~~~~~l--vs~~~--~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t---~~~~v~--~---i~ 1181 (1354)
++++......... +..+. ....+....-+ ++|++.++.|+++-...-..+|.+.. .. .+. . +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EG----la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~-~~~~~~~~~~~ 164 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEG----LAYDPKTNRLFVAKERKPKRLYEVNGFPGGF-DLFVSDDQDLD 164 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EE----EEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEE----EEEcCCCCEEEEEeCCCChhhEEEccccCcc-ceeeccccccc
Confidence 9988442221111 11111 11123444566 99999999999887665566665543 11 111 1 11
Q ss_pred --CCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCC------CCCCeEEEEEecCCCCCEEEEEE
Q 000681 1182 --SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ------QVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1182 --~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~------h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
...-..+.++++.+..+++++....+..|..+| +.++ +...+.-..+ .-..--.|+|.++ |++.+++
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvs- 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD--GNLYIVS- 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEE-
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC--CCEEEEc-
Confidence 111223788877777788888888899999999 4555 3333322111 1135778999988 7555444
Q ss_pred CCCcEEE
Q 000681 1254 QAGDIQF 1260 (1354)
Q Consensus 1254 ~DG~I~I 1260 (1354)
.-+..++
T Consensus 240 EpNlfy~ 246 (248)
T PF06977_consen 240 EPNLFYR 246 (248)
T ss_dssp TTTEEEE
T ss_pred CCceEEE
Confidence 4444433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=66.94 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=89.6
Q ss_pred ECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEeCCCeEEEEEccCCCCcceEEe-eeecccC
Q 000681 1060 DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT-AFSSIQG 1135 (1354)
Q Consensus 1060 s~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~---s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs-~~~~l~~ 1135 (1354)
.....|+-.|++.|+.+..+..+.. ..|..++=.. ......-+.|-++..+..||.+... .+++. ..+.+ .
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~k~Y-~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQSKQY-S 575 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeecccccc-c
Confidence 3457888889999999999998871 2255543210 0124456667778889999997632 22331 11111 1
Q ss_pred CCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000681 1136 HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215 (1354)
Q Consensus 1136 h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDl 1215 (1354)
......| .-....|+|++|+.+|.||+||--... ....+++ -+.+|++| ..+.+|+++++.|. ..+.++|.
T Consensus 576 ~~~~Fs~-----~aTt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~-lG~pI~~i-Dvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSC-----FATTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPG-LGDPIIGI-DVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceE-----EEecCCceEEEEeCCCcEEeecccchh-hhhcCCC-CCCCeeEE-EecCCCcEEEEeec-ceEEEEEE
Confidence 1122222 223478999999999999999943322 2333443 45679999 67889999887774 45666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.4 Score=52.54 Aligned_cols=280 Identities=12% Similarity=0.055 Sum_probs=120.3
Q ss_pred EEcCCCCEEEEEE-CCC--cEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc
Q 000681 1048 LLQPFSPIVVAAD-ENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1048 ~fspdg~~Latgs-~Dg--~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
+|.++|+.|+.++ .+| ++.+.|+++++..+--.+.. .......+ +++++.++-......|+--|+.+ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~T--~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFL--SPDDRALYYVKNGRSLRRVDLDT--LEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE---TTSSEEEEEETTTEEEEEETTT----E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---CCccceEE--ecCCCeEEEEECCCeEEEEECCc--CcE
Confidence 5677887665554 455 45566888876655433221 11112233 46677776555566777778876 333
Q ss_pred eEEeeeecccCCCCCcccceeEEEEe-cCCCeEEEEE----CC-------------------CeEEEEECCCCceeeeee
Q 000681 1125 KLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASG----EV-------------------SSIMLWDLEKEQQMVNPI 1180 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~~~V~si~~~v~~s-p~~~~Lla~g----~D-------------------g~I~VWDl~t~~~~v~~i 1180 (1354)
+.+ +......+-. ..|. ..++..+++. .| ..|..-|+.+++ . ..+
T Consensus 115 ~~v-----y~~p~~~~g~----gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~-~~v 183 (386)
T PF14583_consen 115 RVV-----YEVPDDWKGY----GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-R-KVV 183 (386)
T ss_dssp EEE-----EE--TTEEEE----EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---E-EEE
T ss_pred EEE-----EECCcccccc----cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-e-eEE
Confidence 333 1212222211 2332 1233333331 11 135555677666 3 233
Q ss_pred cCCCCCCeEEEEEEcCCCCEEEEEEC---CC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE---
Q 000681 1181 PSSSDCSISALTASQVHGGQLAAGFV---DG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--- 1253 (1354)
Q Consensus 1181 ~~~~~~~Vtsl~~~s~~g~~L~sgs~---DG-sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs--- 1253 (1354)
-..... +..+.+.+.+...++-+-. +. .-|||-+++...-.+...... ....+..=-|.|+ |..|.--+
T Consensus 184 ~~~~~w-lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~D--G~~i~y~~~~~ 259 (386)
T PF14583_consen 184 FEDTDW-LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPD--GSTIWYDSYTP 259 (386)
T ss_dssp EEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TT--SS-EEEEEEET
T ss_pred EecCcc-ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCC--CCEEEEEeecC
Confidence 222233 6677455555555555432 22 236777665433333332221 1234555567888 65554322
Q ss_pred --CCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------------cEEEEeCCCceEEEEe
Q 000681 1254 --QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ----------------LIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1254 --~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg----------------~I~Iwd~~g~~l~~i~ 1315 (1354)
.+..|.-+|..+++ ...... ...-..+..+++|.+++-=+.|. .|++++........+.
T Consensus 260 ~~~~~~i~~~d~~t~~-~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGE-RRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TT--EEEEEE-TTT---EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCceEEEeeCCCCCC-ceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 23356677787763 222221 22445666788998887544432 4566776655555554
Q ss_pred ccCCc-c--cc-ccCCCeEEEEEecCCCEEEEEEC-CCeEEEc
Q 000681 1316 YHHPS-F--MA-QKIGSVNCLTFHPYQVLLAAGSA-DACVSIH 1353 (1354)
Q Consensus 1316 ~~h~~-f--l~-~~~~~V~sLafspdg~~Lasgs~-Dg~V~IW 1353 (1354)
. |.. + +. .+...=-...|+|||+.++-.+. .|...||
T Consensus 337 ~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 337 R-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred e-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 4 431 1 11 11111256799999987766554 7777766
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0077 Score=56.33 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=63.9
Q ss_pred hhhhhhc-CCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000681 546 AYFIRFL-DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1354)
Q Consensus 546 ~~f~~~L-~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1354)
..+++.| ++++ +..|..++.+|+.+. ..++...+..+++ |++|.||.+++.+||++=.
T Consensus 2 ~~L~~~l~~~~~--~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~i~~- 60 (88)
T PF13646_consen 2 PALLQLLQNDPD--PQVRAEAARALGELG-----------DPEAIPALIELLK-------DEDPMVRRAAARALGRIGD- 60 (88)
T ss_dssp HHHHHHHHTSSS--HHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-------SSSHHHHHHHHHHHHCCHH-
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC-
Confidence 3456777 4444 699999999998442 3467889999998 8999999999999998821
Q ss_pred chHHhHhhcccCchhhHhhhhc-CCChHHHHHHHHHHh
Q 000681 625 FTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLG 661 (1354)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~ 661 (1354)
..+...|..++. |....||.+++.+||
T Consensus 61 ----------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123346777664 567888999999987
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.53 E-value=1 Score=55.21 Aligned_cols=249 Identities=14% Similarity=0.144 Sum_probs=128.8
Q ss_pred EEEEEcCCCCEEEEE-ECCC----cEEEEECCCCceEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC--------
Q 000681 1045 KTALLQPFSPIVVAA-DENE----RIKIWNYEEDTLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNG-------- 1110 (1354)
Q Consensus 1045 ~sL~fspdg~~Latg-s~Dg----~I~IWd~~tg~~l~~~-~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG-------- 1110 (1354)
....++|+|+++|.+ +..| .++|+|+++|+.+... ... ....+.| .+++..|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-----~~~~~~W--~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-----KFSSVSW--SDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-----ESEEEEE--CTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-----ccceEEE--eCCCCEEEEEEeCcccccccCC
Confidence 357899999988865 3334 4999999999776532 221 1223788 57766665554322
Q ss_pred ---eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---CC-CeEEEEECCCC---ceeeeee
Q 000681 1111 ---NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EV-SSIMLWDLEKE---QQMVNPI 1180 (1354)
Q Consensus 1111 ---~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~D-g~I~VWDl~t~---~~~v~~i 1180 (1354)
.|+.|++.+....-.++ +.+...... .+.+..+++++++++.. .+ ..|.+.|+..+ ......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lv-----fe~~~~~~~--~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELV-----FEEPDEPFW--FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEE-----EC-TTCTTS--EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred CCcEEEEEECCCChHhCeeE-----EeecCCCcE--EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 37777876633332344 444443331 22377888999988763 33 46888898875 1123333
Q ss_pred cCCCCCCeEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000681 1181 PSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1255 (1354)
Q Consensus 1181 ~~~~~~~Vtsl~~~s~~g~~L~sgs---~DGsVrIwDlr~~~~--~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D 1255 (1354)
..........+... ++.+++... .++.|...++..... ....+-... ....+..+.... +.+++....+
T Consensus 273 ~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~~~---~~Lvl~~~~~ 346 (414)
T PF02897_consen 273 SPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSLFK---DYLVLSYREN 346 (414)
T ss_dssp EESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEEET---TEEEEEEEET
T ss_pred eCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEEEC---CEEEEEEEEC
Confidence 33333323334222 333333332 346777788877652 111221221 112455555532 3455555555
Q ss_pred C--cEEEEeCCCCCccEEEEec-CCCCeEEEEEcCCCCEE-E-EEeC--CCcEEEEeCCCceEEEE
Q 000681 1256 G--DIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPII-A-SGSA--KQLIKVFSLEGEQLGTI 1314 (1354)
Q Consensus 1256 G--~I~IWDl~~~~~~v~~l~~-h~~~VtsLafspdg~~L-a-sgs~--Dg~I~Iwd~~g~~l~~i 1314 (1354)
+ .|+++|+..+ .....+.. -.+.|..+...+++..+ + ..|. -++|.-||+....+..+
T Consensus 347 ~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 347 GSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp TEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred CccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 4 4889998823 23333332 34456666655665532 2 2232 24677777665555444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.45 E-value=4.3 Score=51.39 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEeC------CCeEEEEEccCCCCcce
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASC------NGNIRIWKDYDQKDKQK 1125 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~-~~~ItsL~f~~s~d~~~L~tgs~------DG~IrIWdl~~~~~~~~ 1125 (1354)
+..+++++.|+.+.-.|.++|+.+..+...... +..+++--.+ .+..++++.. +|.|..+|..+ ++..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~T--G~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKT--GKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCC--Ccee
Confidence 346777888999999999999998876543211 0112221111 1234555432 67888888766 3221
Q ss_pred EEeeeecccC----------------------------CCCCcccceeEEEEecCCCeEEEEE-C----CC---------
Q 000681 1126 LVTAFSSIQG----------------------------HKPGVRCSNVVVDWQQQSGYLYASG-E----VS--------- 1163 (1354)
Q Consensus 1126 lvs~~~~l~~----------------------------h~~~V~si~~~v~~sp~~~~Lla~g-~----Dg--------- 1163 (1354)
- .+..... -...++. .+.+.+..+.++.+. . ++
T Consensus 195 W--~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~---~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 195 W--RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWG---TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred E--eccCcCCCcccccccccccccccccCCCCCCccccCCCCccC---ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 1 1111111 0122333 257777788888774 2 22
Q ss_pred --eEEEEECCCCceeeeeecCCCCC-------CeEEEEEEcCCCC---EEEEEECCCeEEEEECCCCCe
Q 000681 1164 --SIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDM 1220 (1354)
Q Consensus 1164 --~I~VWDl~t~~~~v~~i~~~~~~-------~Vtsl~~~s~~g~---~L~sgs~DGsVrIwDlr~~~~ 1220 (1354)
.|.-.|+++++ ....++..+.. .-..+.-...+|+ .++.+..+|.+.+.|.++++.
T Consensus 270 ~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 270 TSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 67788999998 77666642211 0011111224565 788999999999999999884
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.039 Score=71.76 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=109.6
Q ss_pred ChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000681 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1354)
Q Consensus 544 ~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1354)
.+.++-.+|++++. -.|--+...||.+.++-.. +....-.+++.+.+..|+ ||.|.||.++|.|+||+=.
T Consensus 349 ~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEW--KERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhh
Confidence 35677788888775 5666566678888776555 344456778888999999 9999999999999999998
Q ss_pred cchHHhHhhcccCchhhHhhhhcCC-ChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHH-HHhhhc
Q 000681 624 DFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR-SLLTVV 701 (1354)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ll~~~ 701 (1354)
++...-.....+.+...|+..+.|. .|.|-+.++.||=.|... +........--.+.. .+..+.
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--------------~~~~~l~pYLd~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--------------CDKSILEPYLDGLMEKKLLLLL 484 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHHHHHHHHHh
Confidence 8655433334444554566666555 689999988888877622 111111111122233 455567
Q ss_pred cCCChhhhHHHHHHHHHHHHhhhhhHH
Q 000681 702 SDGSPLVRAEVAVALARFAFGHKQHLK 728 (1354)
Q Consensus 702 ~D~sp~VR~e~~~~l~~~v~~~~~~f~ 728 (1354)
..++|.|++.+|.+++-+...-+..|+
T Consensus 485 ~~~~~~v~e~vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 485 QSSKPYVQEQAVTAIASVADAAQEKFI 511 (1075)
T ss_pred cCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence 889999999999999877665444443
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0097 Score=64.03 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHH
Q 000681 607 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 686 (1354)
Q Consensus 607 ~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~ 686 (1354)
+|.+|.-++++||-|+-.++. +-+.....+...|+|++|.||+.++..|++++...-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------------------ 57 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------------------ 57 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------------------
Confidence 489999999999999987765 223334478899999999999999999999994321
Q ss_pred HHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHh
Q 000681 687 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 687 ~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
+.....+...++..+.|..+.||..+..++..+...
T Consensus 58 ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 58 IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 112233334556677999999999999999998877
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.28 E-value=4 Score=51.73 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=111.6
Q ss_pred CCEEEEEECCCcEEEEECCCCceEEEeeCCCCCC-CCe-------EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc
Q 000681 1053 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD-KGI-------SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1053 g~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~-~~I-------tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1124 (1354)
+..+++++.++.|.-.|..+|+.+.++....+.. ..+ ..+.+ .+..++.++.||.+.-.|..+ ++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~T--Gk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKT--GKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCC--CCE
Confidence 4567777778899999999999888776432100 000 11223 345677888899998888866 433
Q ss_pred eEEeeeecccCCC--CCcccceeEEEEecCCCeEEEEEC------CCeEEEEECCCCceeeeeecCCC------------
Q 000681 1125 KLVTAFSSIQGHK--PGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSSS------------ 1184 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~--~~V~si~~~v~~sp~~~~Lla~g~------Dg~I~VWDl~t~~~~v~~i~~~~------------ 1184 (1354)
.-.. ...++. ..+.+..++ .++.++++.. +|.|..+|.++++ .+..+..-.
T Consensus 143 ~W~~---~~~~~~~~~~~tssP~v-----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 143 VWSK---KNGDYKAGYTITAAPLV-----VKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred Eeec---ccccccccccccCCcEE-----ECCEEEEeecccccCCCcEEEEEECCCCc-eeEeccCcCCCcccccccccc
Confidence 2210 111111 112221111 2456666642 6899999999988 655433211
Q ss_pred ------------------CCCeEEEEEEcCCCCEEEEEECC-----C-----------eEEEEECCCCCeeeEeecCCCC
Q 000681 1185 ------------------DCSISALTASQVHGGQLAAGFVD-----G-----------SVRLYDVRTPDMLVCSTRPHTQ 1230 (1354)
Q Consensus 1185 ------------------~~~Vtsl~~~s~~g~~L~sgs~D-----G-----------sVrIwDlr~~~~~~~~~~~~~~ 1230 (1354)
...+...-...+..+++..+..+ + +|.-.|+++++. .-.++.. .
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~-~ 291 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTT-P 291 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCC-C
Confidence 11122222344555666666532 2 577778888883 3333221 2
Q ss_pred CCC-------CeEEEEEecCCCCC---EEEEEECCCcEEEEeCCCCCccE
Q 000681 1231 QVE-------RVVGISFQPGLDPA---KIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1231 h~~-------~I~sv~fsp~~~g~---~Lasgs~DG~I~IWDl~~~~~~v 1270 (1354)
|.. ...-+.+..+ |+ .++.++.+|.+.+.|-+++ +++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~--G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKD--GKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred CCCccccCCCCcEEEEeccC--CcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 211 1122223233 54 7889999999999999988 454
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.06 Score=67.95 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=101.2
Q ss_pred CChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000681 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1354)
Q Consensus 501 gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq 580 (1354)
-+|+.+++++++...+.|.+.-..|..+...++.-- .+ ..+.+.+-|.+++ +..|.++.=+|+.++ .
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n--~~~~~lAL~~l~~i~--~---- 108 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPN--PYIRGLALRTLSNIR--T---- 108 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSS--HHHHHHHHHHHHHH---S----
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCC--HHHHHHHHhhhhhhc--c----
Confidence 679999999999999999986555666666665511 11 2233444455544 678888888888886 1
Q ss_pred HHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHH
Q 000681 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1354)
.-+-..+...+...|. +++|.||.-+++|+.++....++. ++......+..++.|..|.|+.+++.+|
T Consensus 109 -~~~~~~l~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 109 -PEMAEPLIPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp -HHHHHHHHHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 1133456777778888 899999999999999999875552 1121567889999999999999999999
Q ss_pred hhc
Q 000681 661 GTL 663 (1354)
Q Consensus 661 ~~~ 663 (1354)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.11 Score=59.47 Aligned_cols=237 Identities=17% Similarity=0.197 Sum_probs=157.7
Q ss_pred CcchhhHHHHhhch--hhhhHHHHHHHHHhcCCHHHHHHHHhcC--ChhHHHHhhccCchhhhhHHHHHHHHHhhcChhh
Q 000681 460 PEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVG--IFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1354)
Q Consensus 460 p~~lP~vLq~LlS~--~~rlral~ll~~fld~g~wAv~lal~~g--ifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~ 535 (1354)
.|-+|++.-+|-|. +-+.++..-++. |..+.-|+.-....+ ..|-.+.|..++.+..|-.+.--+ ++++-|-.-
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisn-IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL-rnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISN-IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL-RNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhh-hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH-hhhcccchh
Confidence 37888888877763 344455444332 334555555555556 688888999888766665443333 788889999
Q ss_pred hhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000681 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1354)
Q Consensus 536 Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1354)
|.+.+..|+....++.|+++.. |+.-+ ..||+--| .-++..-..-...|+..-+..+|.. ..+-|....+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~-plila-sVaCIrni-sihplNe~lI~dagfl~pLVrlL~~------~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMG-PLILA-SVACIRNI-SIHPLNEVLIADAGFLRPLVRLLRA------GDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcch-hHHHH-HHHHHhhc-ccccCcccceecccchhHHHHHHhc------CCchhhhhhHH
Confidence 9999999999999999987665 33322 22233111 1122222223466777777777762 33444554444
Q ss_pred HHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 000681 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1354)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1354)
=.|-.|-..++..+..-.+.++..++..++.|+.-+||.++--+++.+.-.. .+.....+..++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d---------------~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND---------------NDKEALLDSGIIP 420 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc---------------ccHHHHhhcCCcc
Confidence 3333333456666666688899999999999999999999988888876221 1222334667788
Q ss_pred HHhhhccCCChhhhHHHHHHHHHHHHh
Q 000681 696 SLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 696 ~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
.|+.+..|.|-+||-.++.+|.-|-..
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999998888777554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.22 E-value=3.2 Score=47.54 Aligned_cols=238 Identities=15% Similarity=0.191 Sum_probs=126.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceE---E
Q 000681 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL---V 1127 (1354)
Q Consensus 1051 pdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~l---v 1127 (1354)
..++.|+.|.++| +.+++.............. .|..+... ++-+.|++-+ ||.+.++++..-...... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 4577899999888 9999984333333333222 48888885 4555666654 499999998652211100 0
Q ss_pred eeee-cccCCCCCcccceeEEE--EecCCCeEEEEECCCeEEEEECCCC-----ceeeeeecCCCCCCeEEEEEEcCCCC
Q 000681 1128 TAFS-SIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIMLWDLEKE-----QQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1128 s~~~-~l~~h~~~V~si~~~v~--~sp~~~~Lla~g~Dg~I~VWDl~t~-----~~~v~~i~~~~~~~Vtsl~~~s~~g~ 1199 (1354)
..-. ...........+.+ ++ -...+...++....+.|.+|..... + ..+++... ..+.++.+. ++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~-~~ke~~lp--~~~~~i~~~---~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK-LLKEISLP--DPPSSIAFL---GN 149 (275)
T ss_pred ccccccccccccccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccc-eeEEEEcC--CCcEEEEEe---CC
Confidence 0000 00000111111111 11 1123445555555668888877653 3 45555543 347888555 67
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCC---------CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccE
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1200 ~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~---------~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v 1270 (1354)
.++.|..++ ..+.|+.++. ......... ....++..+.. ++ +.+|++- |..-.+.|.... +.
T Consensus 150 ~i~v~~~~~-f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~e~Ll~~--~~~g~fv~~~G~--~~ 220 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SD--NEFLLCY--DNIGVFVNKNGE--PS 220 (275)
T ss_pred EEEEEeCCc-eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe-CC--ceEEEEe--cceEEEEcCCCC--cC
Confidence 888888665 7788998665 222221111 01122333333 23 4555543 334444554432 22
Q ss_pred E--EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe-CCCceEEEEec
Q 000681 1271 L--TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1271 ~--~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
+ .+.= .....+++++ .++|++.+. +.|.||+ .+|+.++++..
T Consensus 221 r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 221 RKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2 2221 2345566663 467777665 4599999 56777777765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.41 Score=58.56 Aligned_cols=194 Identities=14% Similarity=0.139 Sum_probs=96.5
Q ss_pred EEEecCCCeEEEEECC----------C-eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000681 1147 VDWQQQSGYLYASGEV----------S-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~D----------g-~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDl 1215 (1354)
++..+.|+-+++..++ . .|+||+..... +..+.-.. ..|.++ .|.. ...|++-..||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l--l~~i~w~~-~~iv~~-~wt~-~e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL--LSSIPWDS-GRIVGM-GWTD-DEELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE--eEEEEECC-CCEEEE-EECC-CCeEEEEEcCCEEEEEeC
Confidence 3445556666655433 1 58999876554 56665544 459999 4544 567778889999999998
Q ss_pred CCCCeeeEeecCCCCCCCCeE-----EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCC
Q 000681 1216 RTPDMLVCSTRPHTQQVERVV-----GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1216 r~~~~~~~~~~~~~~h~~~I~-----sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
.... ... + ...-....|. ...+..+ |-.++ ..++.+.+..--........+..-........+.+...
T Consensus 109 ~G~~-~fs-l-~~~i~~~~v~e~~i~~~~~~~~--GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~ 181 (410)
T PF04841_consen 109 FGEF-QFS-L-GEEIEEEKVLECRIFAIWFYKN--GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT 181 (410)
T ss_pred CCce-eec-h-hhhccccCcccccccccccCCC--CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence 7333 111 1 0000112222 2222222 43333 33455444432211001111111011111111111111
Q ss_pred EEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1291 IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
.+...+.++.+.|.-..|..+..+.. +....-...+++..++.||+|+++|.-..+|.+.|.
T Consensus 182 ~i~~l~~~~~~~i~~~~g~~i~~i~~-~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 182 VIPLLSSDRVVEILLANGETIYIIDE-NSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred cceEeecCcceEEEEecCCEEEEEEc-cccccccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 12223334444444444555554433 220000113689999999999999999999998775
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.15 Score=49.80 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=67.4
Q ss_pred eEEEEEEeeC--CCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEE
Q 000681 1089 ISKLCLVNEL--DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166 (1354)
Q Consensus 1089 ItsL~f~~s~--d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~ 1166 (1354)
|++|++..-. ..+.|++|++|..||||+-.. ++ ..+. ....|.+ +.-. ..+.++.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~---~Ei~-e~~~v~~----L~~~-~~~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IV---AEIT-ETDKVTS----LCSL-GGGRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EE---EEEe-cccceEE----EEEc-CCCEEEEEecCCEEE
Confidence 6677775211 236899999999999998633 22 1122 2233444 3333 347788889999999
Q ss_pred EEECCCCceeeeeecCCCCCCeEEEEEEcCCC---CEEEEEECCCeEEE
Q 000681 1167 LWDLEKEQQMVNPIPSSSDCSISALTASQVHG---GQLAAGFVDGSVRL 1212 (1354)
Q Consensus 1167 VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g---~~L~sgs~DGsVrI 1212 (1354)
+|+-.. .+..++. ...++++..+..++ ..|++|-.+|.|-+
T Consensus 67 vY~~~~---RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 67 VYDRSQ---RLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEeCcc---eeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 998643 2344443 33488887776654 47999999998753
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=61.98 Aligned_cols=92 Identities=22% Similarity=0.230 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCch
Q 000681 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1354)
Q Consensus 559 ~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1354)
|..|.-+..+|+-+|..|+. +-+.....+...|+ |++|.||.-++++|.+|+.. ..+-++..+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~-------D~~~~VR~~al~~Ls~Li~~----d~ik~k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLR-------DEDPLVRKTALLVLSHLILE----DMIKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHc----Cceeehhhhh
Confidence 67899999999999988876 44556778888899 89999999999999999854 1222445554
Q ss_pred hhHhhhhcCCChHHHHHHHHHHhhcccc
Q 000681 639 AIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1354)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 666 (1354)
..++.++.|+.|+||+.+.++|..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999854
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.28 Score=58.97 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=98.8
Q ss_pred EEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCC-------CEEEEEECCCeEEEEECCCC
Q 000681 1147 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-------GQLAAGFVDGSVRLYDVRTP 1218 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g-------~~L~sgs~DGsVrIwDlr~~ 1218 (1354)
+-...+.+.|+..+ .-..++-.|+++++ .+..+..+.+-.+..+ .++. ..-+.|-.|..|.-||.|-.
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~di~mv~~---t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDDINMVDI---TPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccce-eeeEeeccCCcceeec---cCCcchhcccccccEEeecCCceEEeccccc
Confidence 34445666666654 55678999999999 9999988766223333 2322 22345777889999999954
Q ss_pred Ce-eeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 000681 1219 DM-LVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1296 (1354)
Q Consensus 1219 ~~-~~~~~~~~~-~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs 1296 (1354)
.. .+...+.+. .......|.+-.. ..+||+||.+|.||+||- .+......+.+-..+|..+..+.+|++|++.+
T Consensus 415 ~~~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 415 GKNKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CcceeeeeeccccccccccceeeecC---CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 32 111111111 1123344555443 468999999999999997 44345566777788999999999999877655
Q ss_pred CCCcEEEEe
Q 000681 1297 AKQLIKVFS 1305 (1354)
Q Consensus 1297 ~Dg~I~Iwd 1305 (1354)
+.++.+-+
T Consensus 491 -~tyLlLi~ 498 (644)
T KOG2395|consen 491 -KTYLLLID 498 (644)
T ss_pred -ccEEEEEE
Confidence 45676666
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=65.17 Aligned_cols=198 Identities=17% Similarity=0.132 Sum_probs=137.1
Q ss_pred HHHhhHHHHhcCCCCCCCCCcchhhHHHHhhchhhhhHHHH--HHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhh
Q 000681 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1354)
Q Consensus 441 ~qLtafe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rlral~--ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr 518 (1354)
+...++..-+-.-....+...-+|-|.+++.|+.+++|-+. .|..|.+..|-...++ ..-+.|=|+++.+..|
T Consensus 22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~~~~ 96 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNPYIR 96 (526)
T ss_dssp HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCHHHH
Confidence 34445554333322222444788999999999999999887 5678998888866664 3456778888887888
Q ss_pred hHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcC
Q 000681 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1354)
Q Consensus 519 ~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1354)
.+++=.++.|.. +.-- +.+.....+.|.+++ |..|.=++.++..+.+.++.- ++..+.+.+..+|.
T Consensus 97 ~lAL~~l~~i~~--~~~~-----~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~- 162 (526)
T PF01602_consen 97 GLALRTLSNIRT--PEMA-----EPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLS- 162 (526)
T ss_dssp HHHHHHHHHH-S--HHHH-----HHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTT-
T ss_pred HHHHhhhhhhcc--cchh-----hHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhcc-
Confidence 887777777662 2211 223445566666555 689999999999999887662 12226888889998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccc
Q 000681 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 599 ~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
|++|.|+.+++.+|..+ ...+.... .+-......|..++.+++|-++..++-.|..+..
T Consensus 163 ------d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 163 ------DKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp ------HSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred ------CCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 88999999999999999 32223211 2233334567777799999999999999998873
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.31 Score=61.19 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=152.4
Q ss_pred HHHhhHHHHhcCCCCCCCCCcchhhHHHHhhchhhhh--HHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhh
Q 000681 441 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 518 (1354)
Q Consensus 441 ~qLtafe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rl--ral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr 518 (1354)
+.|+.++..+..-+....-|. |+++..|.+...+. -++.+|.+.++...+... ..++.+++.+.|+.+.+..|
T Consensus 20 ~~L~~l~~~~~~~~~l~~~~~--~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 20 EALPELKTELSSSPFLERLPE--PVLFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred HHHHHHHHHHhhhhHHHhchH--HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHH
Confidence 567777766654442222222 33555566552221 233367777766555433 45788999999999999999
Q ss_pred hHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcC
Q 000681 519 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 598 (1354)
Q Consensus 519 ~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~ 598 (1354)
..++-.+.++.........-+...+.+...+..|.+++. +....++=+|..+.. ++.+-..-+..++...+..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~- 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMS- 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHh-
Confidence 998888888886654444455667788888899988875 778888889999986 4555555567777888888777
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccc
Q 000681 599 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 599 ~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
.++..+|-=+.=++.++....++.-....+.++...++..|.+...+||..++=.|+.+..
T Consensus 171 ------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 171 ------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred ------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 4455666555566788888888888888889999999999999999999999999999884
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.83 E-value=8.1 Score=50.34 Aligned_cols=279 Identities=16% Similarity=0.168 Sum_probs=147.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCce-------EEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEe---CCCeE
Q 000681 1045 KTALLQPFSPIVVAADENERIKIWNYEEDTL-------LNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS---CNGNI 1112 (1354)
Q Consensus 1045 ~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~-------l~~~~~h~~~~~~ItsL~f~~s~--d~~~L~tgs---~DG~I 1112 (1354)
.|+..-++| .|.+|+.-|.=.+-.+.+... +.++.+- ++|.+++..... .+..++|++ .||++
T Consensus 310 ssi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NL----gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSL 384 (1096)
T KOG1897|consen 310 SSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNL----GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSL 384 (1096)
T ss_pred hhhhcccCc-eEEEeccCCceeeEEccccCCCCchhhhhhhcccc----cceeeEEEEeccccCCceEEEEeCCCCCCcE
Confidence 344444444 677787666656665543222 2334333 489999987544 456777765 48999
Q ss_pred EEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEE
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~ 1192 (1354)
||.+..- +-.++. .-.+.| -..++.+...+.-+.+ .+++.+- -+.-++..+..+- ......+-... ...+.
T Consensus 385 RiiRngi--~I~e~A--~i~l~G-ikg~w~lk~~v~~~~d-~ylvlsf-~~eTrvl~i~~e~-ee~~~~gf~~~-~~Tif 455 (1096)
T KOG1897|consen 385 RIIRNGI--GIDELA--SIDLPG-IKGMWSLKSMVDENYD-NYLVLSF-ISETRVLNISEEV-EETEDPGFSTD-EQTIF 455 (1096)
T ss_pred EEEeccc--ccceee--EeecCC-ccceeEeeccccccCC-cEEEEEe-ccceEEEEEccce-EEecccccccc-CceEE
Confidence 9998643 222221 112333 2223331111112222 3555543 2334455544332 22222222222 34443
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEE
Q 000681 1193 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1272 (1354)
Q Consensus 1193 ~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~ 1272 (1354)
+..-.|+.++-... ..||++|-. + ....|... +.++....+-+ ...++.++.++.+...++.... +..
T Consensus 456 ~S~i~g~~lvQvTs-~~iRl~ss~-~--~~~~W~~p----~~~ti~~~~~n--~sqVvvA~~~~~l~y~~i~~~~--l~e 523 (1096)
T KOG1897|consen 456 CSTINGNQLVQVTS-NSIRLVSSA-G--LRSEWRPP----GKITIGVVSAN--ASQVVVAGGGLALFYLEIEDGG--LRE 523 (1096)
T ss_pred EEccCCceEEEEec-ccEEEEcch-h--hhhcccCC----CceEEEEEeec--ceEEEEecCccEEEEEEeeccc--eee
Confidence 33345555555443 468888865 1 23334332 44555555555 5677888878888888877662 222
Q ss_pred Ee--cCCCCeEEEEEcCCC------CEEEEEeCCCcEEEEe--CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEE
Q 000681 1273 ID--AHRGSLSALAVHRHA------PIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1342 (1354)
Q Consensus 1273 l~--~h~~~VtsLafspdg------~~Lasgs~Dg~I~Iwd--~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~La 1342 (1354)
.. .....|.|+.++|-| +++|.|.++..+.+.- -+...+..... .+ .--...|.-..|--|..+|.
T Consensus 524 ~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l--~~--~~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 524 VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL--SG--EIIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc--CC--CccchheeeEEeeccceEEE
Confidence 22 235689999999742 2788898877666554 23332222211 00 00113455566767788999
Q ss_pred EEECCCeEEEc
Q 000681 1343 AGSADACVSIH 1353 (1354)
Q Consensus 1343 sgs~Dg~V~IW 1353 (1354)
++..||.+.-|
T Consensus 600 valgdG~l~~f 610 (1096)
T KOG1897|consen 600 VALGDGALLYF 610 (1096)
T ss_pred EEcCCceEEEE
Confidence 99999987644
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.19 Score=64.85 Aligned_cols=91 Identities=15% Similarity=0.330 Sum_probs=71.2
Q ss_pred eEEEeeCCCcEE--EEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCC
Q 000681 1023 DLAVSKLNNPIA--CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV 1100 (1354)
Q Consensus 1023 ~L~~s~~d~~I~--iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~ 1100 (1354)
+++..+..+.++ .|+-+.+.+|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+...|-.+.+ ..++
T Consensus 110 hvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~--t~~n 187 (1206)
T KOG2079|consen 110 HVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGR--TSQN 187 (1206)
T ss_pred hhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEE--eCCC
Confidence 334444455556 677777899999999999999999999999999999999999999888855566666666 3455
Q ss_pred CEEEEEeCCCeEEEEEc
Q 000681 1101 SLLLVASCNGNIRIWKD 1117 (1354)
Q Consensus 1101 ~~L~tgs~DG~IrIWdl 1117 (1354)
..++++..-|. +|..
T Consensus 188 S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 188 SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cEEEEccCCCc--eEEE
Confidence 67888877776 6765
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.077 Score=66.18 Aligned_cols=166 Identities=20% Similarity=0.254 Sum_probs=111.3
Q ss_pred HHHHhhch--hhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhh-hhhhcc
Q 000681 466 VLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ-VDLVKD 542 (1354)
Q Consensus 466 vLq~LlS~--~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q-~~l~k~ 542 (1354)
+.++|-|. ...+.|+.-+--.|.-|.-+. -.||-|+|...+...|.|.. ||+. ++++-..-| .+|+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkL-VyvY--LlrYAEeqpdLALLS- 109 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKL-VYVY--LLRYAEEQPDLALLS- 109 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHH-HHHH--HHHHhhcCCCceeee-
Confidence 45667774 344567664333444444332 35999999999999999885 5554 222222222 22333
Q ss_pred cChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000681 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1354)
Q Consensus 543 ~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1354)
+++|-+-|.|++ ++.|+|+.=+|+-|= .-.+..-++-..-+... |+.|-||+-+++|+-+|.
T Consensus 110 --IntfQk~L~DpN--~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~-------D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 110 --INTFQKALKDPN--QLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVT-------DPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred --HHHHHhhhcCCc--HHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhc-------CCcHHHHHHHHHhhHHHh
Confidence 678999998887 599999999998872 11122222222223334 899999999999999999
Q ss_pred ccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
.-.++-+. .+.+.+-.||+|.+|.|--++|+|+-..-
T Consensus 172 sLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 172 SLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred cCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 76555443 44556778999999999999999987665
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.085 Score=67.32 Aligned_cols=141 Identities=20% Similarity=0.211 Sum_probs=105.1
Q ss_pred CChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000681 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1354)
Q Consensus 501 gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq 580 (1354)
..||-|+|..++...|+|.++=+-|-++-...|.-+..+ .+.|.+=|++++ |+.|.++.=-|+.+ +
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kDl~d~N--~~iR~~AlR~ls~l-------~ 120 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VNTIQKDLQDPN--EEIRGFALRTLSLL-------R 120 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhhccCCC--HHHHHHHHHHHHhc-------C
Confidence 358999999998889999998888877777777333222 234555566555 69998888777766 2
Q ss_pred HHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHH
Q 000681 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1354)
.-.+-..++.-+.++++ |+.|.||+-+++|++++..-.. ...-+.+....+-.++.|.+|.|=++|+.+|
T Consensus 121 ~~el~~~~~~~ik~~l~-------d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 121 VKELLGNIIDPIKKLLT-------DPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred hHHHHHHHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 23345666777777888 9999999999999999985422 2334444566677888999999999999999
Q ss_pred hhccc
Q 000681 661 GTLLD 665 (1354)
Q Consensus 661 ~~~i~ 665 (1354)
-.+-.
T Consensus 191 ~~i~~ 195 (757)
T COG5096 191 AEIDP 195 (757)
T ss_pred HHhch
Confidence 88763
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.45 Score=54.78 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=125.6
Q ss_pred CcchhhHHHHhhchhhhhHHHHHHH-HHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhh
Q 000681 460 PEQLPIVLQVLLSQCHRFRALVLLG-RFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 538 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~~rlral~ll~-~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~ 538 (1354)
|.-.|-+.++.-+...+.+-.--++ |-|..+..=+.--+.-|..|..++|||++.--+-.--||.. |=+++.|--- -
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI-rnisihplNe-~ 327 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI-RNISIHPLNE-V 327 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH-hhcccccCcc-c
Confidence 3455666666666665555443222 34444443345556779999999999987432222223332 2245554332 3
Q ss_pred hhcccCh-hhhhhhcCCCCCchHHHHHHHHHHHHHh---cCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHH
Q 000681 539 LVKDGGH-AYFIRFLDSMEAYPEQRAMAAFVLAVIV---DGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 614 (1354)
Q Consensus 539 l~k~~~~-~~f~~~L~~~~~~~~~r~~~af~La~l~---~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~ 614 (1354)
++-+.|| .-.+++|...++ |.-|..| .+.+| ..+.....+-+..+++.+|.+++. |..-+||.=.
T Consensus 328 lI~dagfl~pLVrlL~~~dn--EeiqchA--vstLrnLAasse~n~~~i~esgAi~kl~eL~l-------D~pvsvqsei 396 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDN--EEIQCHA--VSTLRNLAASSEHNVSVIRESGAIPKLIELLL-------DGPVSVQSEI 396 (550)
T ss_pred ceecccchhHHHHHHhcCCc--hhhhhhH--HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-------cCChhHHHHH
Confidence 4444444 457778877665 3333222 33344 336777788889999999999999 6667788888
Q ss_pred HHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 615 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 615 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
--|+++|--. +..|..-.+.++...|++++.|.+-|||--+.-||+.|-
T Consensus 397 sac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 397 SACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 8888887643 344555688888889999999999999999999999886
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.051 Score=70.44 Aligned_cols=140 Identities=12% Similarity=0.155 Sum_probs=94.2
Q ss_pred ChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000681 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1354)
Q Consensus 544 ~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1354)
+|...++.+...+ .++|.|+-+-|...-+..++- ---+++.+.+=++ |++|.+|..++=.|+.+-.
T Consensus 69 LF~dVvk~~~S~d--~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~-------d~Np~IRaLALRtLs~Ir~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTD--LELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTT-------NSSPVVRALAVRTMMCIRV 134 (746)
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcC-------CCCHHHHHHHHHHHHcCCc
Confidence 4455556666665 499999998887775444331 1122344444455 8899999999999987664
Q ss_pred cchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccC
Q 000681 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1354)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1354)
. .+-+.+...+-.++.|.+|-||+.+++++.++.....+.. .+..+...|..++.|
T Consensus 135 ~-------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-----------------~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 135 S-------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-----------------YQQDFKKDLVELLND 190 (746)
T ss_pred H-------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----------------cccchHHHHHHHhcC
Confidence 3 1222334456778899999999999999999874322110 122233445566789
Q ss_pred CChhhhHHHHHHHHHHHH
Q 000681 704 GSPLVRAEVAVALARFAF 721 (1354)
Q Consensus 704 ~sp~VR~e~~~~l~~~v~ 721 (1354)
..|+|..-++.++..+..
T Consensus 191 ~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999999988877753
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.025 Score=41.80 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.1
Q ss_pred ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1268 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1268 ~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.+...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.023 Score=61.72 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=89.0
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~ 1234 (1354)
.+.+.+.||.|+-++++..+...+.-.. +.+.......+..+++|+.+|.|++|...........+... ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc---ccc
Confidence 4555678899998888765411111111 11111223346789999999999999987332122111111 122
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEeCC
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASG--SAKQLIKVFSLE 1307 (1354)
Q Consensus 1235 I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~-~~VtsLafspdg~~Lasg--s~Dg~I~Iwd~~ 1307 (1354)
|.++--.-. .+.+.++++.||.|+.|++.-. ..+.....|. .++..+..+..+.+++.. |.|..++.|++.
T Consensus 104 i~~~Ip~~~-~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 104 IDLGIPNGR-DSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceecccccc-ccceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333222222 3668999999999999999877 4555555666 566666677677777777 888888888854
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.65 E-value=3.5 Score=49.41 Aligned_cols=263 Identities=11% Similarity=0.086 Sum_probs=132.7
Q ss_pred cCCCCEEEEEE---------CCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCC
Q 000681 1050 QPFSPIVVAAD---------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1050 spdg~~Latgs---------~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~ 1120 (1354)
|||+++++... ..+.+.|||+++++....... . ..+....| +++|+.++... ++.|.+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE---SSSTEEEEEE-TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---ccccccee--ecCCCeeEEEe-cCceEEEECCCC
Confidence 57888777642 356788999998755443333 2 46778888 78999998886 568999987552
Q ss_pred CCcceEEeeee---cccCCCC-----CcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC-CCCCeEE
Q 000681 1121 KDKQKLVTAFS---SIQGHKP-----GVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS-SDCSISA 1190 (1354)
Q Consensus 1121 ~~~~~lvs~~~---~l~~h~~-----~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~-~~~~Vts 1190 (1354)
...-++.-. .+.|-.. .|......+-|+|++.+|+... ++..|+.+.+.... ..+ .-..+..
T Consensus 74 --~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~------~~~~~yp~~~~ 145 (353)
T PF00930_consen 74 --QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS------PPDSQYPEVES 145 (353)
T ss_dssp --EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES------SSTESS-EEEE
T ss_pred --CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC------CccccCCcccc
Confidence 111111000 0000000 0111122388999999998874 55555555432111 000 0112444
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEEE--CCC---cEEEEeCC
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSAS--QAG---DIQFLDIR 1264 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~-~~~~h~~~I~sv~fsp~~~g~~Lasgs--~DG---~I~IWDl~ 1264 (1354)
+ ..+.-|..-.. -.+.++|+.+++....... .......-+..+.|.++ +..|+..- .+. .+.++|..
T Consensus 146 ~-~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 I-RYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp E-E--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEEEEEEC
T ss_pred c-ccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEEEEECC
Confidence 4 22322322211 1467788887763211111 11122467899999998 66344333 332 37778887
Q ss_pred CCCccEEEEecCCCCe---EEEEEc-CCCC-EEEEEeCCCc--EEEEeCCCceEEEEeccCCccccccCCCeE-EEEEec
Q 000681 1265 NHKDAYLTIDAHRGSL---SALAVH-RHAP-IIASGSAKQL--IKVFSLEGEQLGTIRYHHPSFMAQKIGSVN-CLTFHP 1336 (1354)
Q Consensus 1265 ~~~~~v~~l~~h~~~V---tsLafs-pdg~-~Lasgs~Dg~--I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~-sLafsp 1336 (1354)
++...+.......+.| ....|. +++. ++.....||. |.+++.++.....+.. . .-.|. -+.|++
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G-------~~~V~~i~~~d~ 290 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-G-------DWEVTSILGWDE 290 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S-------SS-EEEEEEEEC
T ss_pred CCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-C-------ceeecccceEcC
Confidence 7632222222233333 245554 5555 5555556765 4455577776665543 1 13453 467788
Q ss_pred CCCEEE
Q 000681 1337 YQVLLA 1342 (1354)
Q Consensus 1337 dg~~La 1342 (1354)
++..|.
T Consensus 291 ~~~~iy 296 (353)
T PF00930_consen 291 DNNRIY 296 (353)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 776554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.45 Score=46.64 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=68.4
Q ss_pred eEEEEEEcCCC---CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000681 1188 ISALTASQVHG---GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264 (1354)
Q Consensus 1188 Vtsl~~~s~~g---~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~ 1264 (1354)
|++|+.+.-++ +.|++|+.|..||+|+-.. ++..+... ..|++++-.. +..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~----~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET----DKVTSLCSLG---GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc----cceEEEEEcC---CCEEEEEecCCEEEEEeCc
Confidence 66775555444 6899999999999998542 33333222 6788887665 4679999999999999864
Q ss_pred CCCccEEEEecCCCCeEEEEEcC-CC---CEEEEEeCCCcEEE
Q 000681 1265 NHKDAYLTIDAHRGSLSALAVHR-HA---PIIASGSAKQLIKV 1303 (1354)
Q Consensus 1265 ~~~~~v~~l~~h~~~VtsLafsp-dg---~~Lasgs~Dg~I~I 1303 (1354)
. .+..++... .++++++.. ++ +-|++|-.+|.|-+
T Consensus 72 ~---RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q---RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c---eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 344444333 366665543 32 27888888887753
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.2 Score=48.52 Aligned_cols=203 Identities=10% Similarity=0.157 Sum_probs=130.6
Q ss_pred ccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEE
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1212 (1354)
Q Consensus 1133 l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrI 1212 (1354)
+.+....+.+ +.|+|+.+.|++..+...-.||=..+++ .+++++-..-...-.|.+ -.+|.+.++--.++.+.+
T Consensus 81 i~g~~~nvS~----LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Iey-ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSS----LTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEY-IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccc----eeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEE-ecCCEEEEEehhcceEEE
Confidence 3444455666 9999999999999988888888777777 888887543333445533 345556666667888888
Q ss_pred EECCCCCeeeE------eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccE--EEEecC-------C
Q 000681 1213 YDVRTPDMLVC------STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAH-------R 1277 (1354)
Q Consensus 1213 wDlr~~~~~~~------~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v--~~l~~h-------~ 1277 (1354)
+.+........ ........+...-.++|.|. ...|..+-+-.-+.||.+......+ .....+ -
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 87765432211 11112122567889999999 7777777777777777765432111 111111 1
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCceEEEEeccCCcccc--ccCCCeEEEEEecCCCEEEEE
Q 000681 1278 GSLSALAVHRH-APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAAG 1344 (1354)
Q Consensus 1278 ~~VtsLafspd-g~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~--~~~~~V~sLafspdg~~Lasg 1344 (1354)
..|+++.|++. +.+++-+..++.+.-.|.+|+.+..+.. +.+..+ ......-.++...+|...+++
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 25788889875 4577777788888889999998777765 554422 233345677888777665554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.44 E-value=6.5 Score=45.01 Aligned_cols=227 Identities=11% Similarity=0.121 Sum_probs=122.0
Q ss_pred CceEEEeeCCCcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEee-----------
Q 000681 1021 SFDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD----------- 1080 (1354)
Q Consensus 1021 ~~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~----------- 1080 (1354)
+..++++..+| +.+++.... ..|..+...++-+.|++-+ |+.+.++++..-.....-.
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 34577776666 777777322 4588999999888777766 5999999987543333110
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcc-eEEeeeecccCCCCCcccceeEEEEecCCCeEEEE
Q 000681 1081 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1159 (1354)
Q Consensus 1081 ~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~-~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~ 1159 (1354)
..-.....+...+-.....+...++......|.||......... ... +.+. ....+.+ ++|. ++.+++|
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~---ke~~-lp~~~~~----i~~~--~~~i~v~ 154 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL---KEIS-LPDPPSS----IAFL--GNKICVG 154 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee---EEEE-cCCCcEE----EEEe--CCEEEEE
Confidence 00001123444441112344444445556699999886532222 222 1121 1233344 7776 6677776
Q ss_pred ECCCeEEEEECCCCceeeeeecCCC-----------CCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeee-EeecC
Q 000681 1160 GEVSSIMLWDLEKEQQMVNPIPSSS-----------DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV-CSTRP 1227 (1354)
Q Consensus 1160 g~Dg~I~VWDl~t~~~~v~~i~~~~-----------~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~-~~~~~ 1227 (1354)
..++ ..+.|+.++. ....+.... ..++..+ .. +++.+++ +. |..-.+.|.. ++... ..+ .
T Consensus 155 ~~~~-f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~e~Ll-~~-~~~g~fv~~~-G~~~r~~~i-~ 226 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIF-QL-SDNEFLL-CY-DNIGVFVNKN-GEPSRKSTI-Q 226 (275)
T ss_pred eCCc-eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEE-Ee-CCceEEE-Ee-cceEEEEcCC-CCcCcccEE-E
Confidence 6544 8888998766 322221111 1112222 22 2344444 43 3333344543 32121 111 2
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecC
Q 000681 1228 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1276 (1354)
Q Consensus 1228 ~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h 1276 (1354)
+. ....++.+. ..+|+..+. +.|.||++.++ +.++++...
T Consensus 227 W~---~~p~~~~~~----~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~ 266 (275)
T PF00780_consen 227 WS---SAPQSVAYS----SPYLIAFSS-NSIEVRSLETG-ELVQTIPLP 266 (275)
T ss_pred cC---CchhEEEEE----CCEEEEECC-CEEEEEECcCC-cEEEEEECC
Confidence 32 456677775 446766655 45999999998 688877743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.34 Score=58.86 Aligned_cols=118 Identities=19% Similarity=0.020 Sum_probs=86.3
Q ss_pred hhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000681 545 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1354)
Q Consensus 545 ~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1354)
...++..|.+.+ +..|+=++--|+.+= ...+...++..|. +++|.||..++-++|..-.+
T Consensus 88 ~~~L~~~L~d~~--~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGP--EGLCAGIQAALGWLG-----------GRQAEPWLEPLLA-------ASEPPGRAIGLAALGAHRHD 147 (410)
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHhcCC-----------chHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccC
Confidence 455677776654 457777777777652 4566788888898 88999999888888873222
Q ss_pred chHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCC
Q 000681 625 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 704 (1354)
Q Consensus 625 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 704 (1354)
....+..+|+|.+|.||++++-+||.+-... ....|.....|.
T Consensus 148 ------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-------------------------a~~~L~~al~d~ 190 (410)
T TIGR02270 148 ------------PGPALEAALTHEDALVRAAALRALGELPRRL-------------------------SESTLRLYLRDS 190 (410)
T ss_pred ------------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-------------------------chHHHHHHHcCC
Confidence 2336888999999999999999999875210 112244557899
Q ss_pred ChhhhHHHHHHHHHH
Q 000681 705 SPLVRAEVAVALARF 719 (1354)
Q Consensus 705 sp~VR~e~~~~l~~~ 719 (1354)
.+.||..++..++.+
T Consensus 191 ~~~VR~aA~~al~~l 205 (410)
T TIGR02270 191 DPEVRFAALEAGLLA 205 (410)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.025 Score=56.01 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=64.5
Q ss_pred hhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 585 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 585 ~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+-.++.+++.+|.. +.+|...+-+|.=||.|+.-++.++.+.-+.++-+.+..|++++.|+||.+|+.+++.++
T Consensus 41 ~~~llk~L~~lL~~------s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDK------SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcc------CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45678888899853 458999999999999999999999999988999999999999999999999999999987
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.066 Score=65.40 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEeC-CCce
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVFSL-EGEQ 1310 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~Vt-sLafspdg~~Lasgs~Dg~I~Iwd~-~g~~ 1310 (1354)
..|.-+.|+|. -..||.+..+|.|-++.++ . +.+.++..|...++ +++|.|||+.||.|-.||+|++.|. .|..
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 56889999999 9999999999999999988 4 57888887777777 9999999999999999999999995 4555
Q ss_pred EEEEeccCCccccccCCCeEEEEEe
Q 000681 1311 LGTIRYHHPSFMAQKIGSVNCLTFH 1335 (1354)
Q Consensus 1311 l~~i~~~h~~fl~~~~~~V~sLafs 1335 (1354)
+..... .....|.++-|.
T Consensus 97 l~~~~~-------s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLF-------SVETDISKGIWD 114 (665)
T ss_pred eecccc-------ccccchheeecc
Confidence 554211 012567777775
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.054 Score=39.93 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000681 1327 GSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1327 ~~V~sLafspdg~~Lasgs~Dg~V~IWd 1354 (1354)
..|.++.|++++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 7899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.065 Score=65.46 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=72.1
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeE-EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS-ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vt-sl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~ 1225 (1354)
+.|+|.-..++.+..+|.|.+.-+. .+ .+.+++.+... ++ ++ +|.++|+.+++|..||+|++.|..++..+....
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~-v~~sL-~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGEN-VTASL-CWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cc-eeEeccCCCCc-cceee-eecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 8999999999999999999999888 55 68888866555 55 88 788999999999999999999999987444321
Q ss_pred cCCCCCCCCeEEEEEecC
Q 000681 1226 RPHTQQVERVVGISFQPG 1243 (1354)
Q Consensus 1226 ~~~~~h~~~I~sv~fsp~ 1243 (1354)
.. -...|.++.|.+.
T Consensus 102 ~s---~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 102 FS---VETDISKGIWDRI 116 (665)
T ss_pred cc---cccchheeecccc
Confidence 11 1267888888643
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.54 Score=56.71 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCCE-EEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCC-----EEEEEeCCCeEEEEEccCCCCcce
Q 000681 1052 FSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-----LLLVASCNGNIRIWKDYDQKDKQK 1125 (1354)
Q Consensus 1052 dg~~-Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~-----~L~tgs~DG~IrIWdl~~~~~~~~ 1125 (1354)
+.++ |.++.....++--|++.|+.+..++.+. .|+-+.+.|...+. .=+.|-+|..|.-||.+- ++...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv-~~~~k 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV-QGKNK 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEecccc-cCcce
Confidence 3443 4455566778888999999999999888 36666663322222 223455677788899875 23222
Q ss_pred EEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE
Q 000681 1126 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1205 (1354)
Q Consensus 1126 lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs 1205 (1354)
+. | .++|.-. +.-.+.+.-...+++|++|+.+|.||+||- .+. .-++.-..-+.+|+.| -.+.+|+++++.|
T Consensus 419 l~--~--~q~kqy~-~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hV-dvtadGKwil~Tc 490 (644)
T KOG2395|consen 419 LA--V--VQSKQYS-TKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHV-DVTADGKWILATC 490 (644)
T ss_pred ee--e--eeccccc-cccccceeeecCCceEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeE-EeeccCcEEEEec
Confidence 22 1 1222111 110111122236899999999999999997 444 3333333345569999 5567888887666
Q ss_pred CCCeEEEEECC
Q 000681 1206 VDGSVRLYDVR 1216 (1354)
Q Consensus 1206 ~DGsVrIwDlr 1216 (1354)
+..+.+-|+.
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 4566666654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.9 Score=57.91 Aligned_cols=223 Identities=13% Similarity=0.172 Sum_probs=111.5
Q ss_pred CCEEEEEECC------CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC-C-----eEEEEEccCC
Q 000681 1053 SPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-G-----NIRIWKDYDQ 1120 (1354)
Q Consensus 1053 g~~Latgs~D------g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D-G-----~IrIWdl~~~ 1120 (1354)
+.++++|+.+ ..+..||..+++......-.. ...-.+++.. ++.+.++||.| | ++..||...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~--~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~- 358 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS--PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT- 358 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc--ccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC-
Confidence 3344555544 357777777663332221111 1223455553 66788888888 3 355666644
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeEEEEEE
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg-----~I~VWDl~t~~~-~v~~i~~~~~~~Vtsl~~~ 1194 (1354)
+. |.........-...+++ -. ++...++||.|| +|-.||..+.+- .+..+.. ...+....
T Consensus 359 -~~------W~~~a~M~~~R~~~~v~--~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~ 424 (571)
T KOG4441|consen 359 -NQ------WTPVAPMNTKRSDFGVA--VL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVA 424 (571)
T ss_pred -Cc------eeccCCccCccccceeE--EE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCc----ceeeeEEE
Confidence 22 22222222221221111 11 455666677775 478888887650 1111111 12222223
Q ss_pred cCCCCEEEEEECCC------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-----EEEEeC
Q 000681 1195 QVHGGQLAAGFVDG------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-----IQFLDI 1263 (1354)
Q Consensus 1195 s~~g~~L~sgs~DG------sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~-----I~IWDl 1263 (1354)
.-+|.+.++|+.+| +|..||..+++ . ........-..... ++.- ++.+.+.|+.||. |..||.
T Consensus 425 ~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W-~~~~~M~~~R~~~g-~a~~---~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSSNCLNSVECYDPETNT-W-TLIAPMNTRRSGFG-VAVL---NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EECCEEEEEcCcCCCccccceEEEEcCCCCc-e-eecCCcccccccce-EEEE---CCEEEEECCccCCCccceEEEEcC
Confidence 33788888888665 57889988775 1 11111111111122 3322 3778888988873 778888
Q ss_pred CCCCccEEEEec---CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEe
Q 000681 1264 RNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQ-----LIKVFS 1305 (1354)
Q Consensus 1264 ~~~~~~v~~l~~---h~~~VtsLafspdg~~Lasgs~Dg-----~I~Iwd 1305 (1354)
.+. ....+.. ....+....+ ++...+.|+.|| +|..||
T Consensus 499 ~~~--~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 499 ETN--QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred CCC--ceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcC
Confidence 765 2222221 2222222222 556778887765 355555
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.05 Score=46.29 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 000681 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL 621 (1354)
Q Consensus 559 ~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l 621 (1354)
|..|.-++.+|+.+....+.... -...+++..+..+|+ |+++.||..+|.+||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~-~~~~~~~~~L~~~L~-------d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ-PYLPELLPALIPLLQ-------DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH-HHHHHHHHHHHHHTT-------SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH-HHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhcC
Confidence 56899999999997766655433 378889999999998 78889999999999975
|
... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.039 Score=59.99 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCC
Q 000681 1152 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1231 (1354)
Q Consensus 1152 ~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h 1231 (1354)
-+..+++|+.+|.|.+|...... ............|.++...-.++.+..+++.||.||.|++...+..-. . ..|
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~-~---g~h 143 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEG-AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY-V---GQH 143 (238)
T ss_pred cCceEEeecccceEEEecCCccc-hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee-e---ccc
Confidence 35788999999999999987443 222222222223554423334556899999999999999987763322 2 123
Q ss_pred C-CCeEEEEEecCCCCCEEEEE--ECCCcEEEEeCCC
Q 000681 1232 V-ERVVGISFQPGLDPAKIVSA--SQAGDIQFLDIRN 1265 (1354)
Q Consensus 1232 ~-~~I~sv~fsp~~~g~~Lasg--s~DG~I~IWDl~~ 1265 (1354)
. ..+........ +..++.+ |.|..++.|++..
T Consensus 144 ~~~~~e~~ivv~s--d~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 144 NFESGEELIVVGS--DEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCCCcceeEEecC--CceEEeeccccchhhhhcchhh
Confidence 3 33444444443 5566666 6666666666653
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.13 Score=57.11 Aligned_cols=90 Identities=24% Similarity=0.362 Sum_probs=67.7
Q ss_pred cHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcC--CChHHHHHHHHHHhhcc
Q 000681 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sP~VRaa~v~aL~~~i 664 (1354)
..++.+.+-|. ++++++|-=++++||||-..- .++ .|.+.|.| ..||||-++..|||.+-
T Consensus 187 eaI~al~~~l~-------~~SalfrhEvAfVfGQl~s~~----------ai~-~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 187 EAINALIDGLA-------DDSALFRHEVAFVFGQLQSPA----------AIP-SLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHHhcc-------cchHHHHHHHHHHHhhccchh----------hhH-HHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 45666777777 679999999999999997642 222 45555544 47999999999999876
Q ss_pred ccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHH
Q 000681 665 DIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1354)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~ 719 (1354)
+. .....|-+.+.|.+++||++..++|+-.
T Consensus 249 ~e-------------------------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 249 DE-------------------------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred CH-------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 21 1234556688999999999999999854
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.63 E-value=7.9 Score=46.96 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=126.0
Q ss_pred CCcEEEEeCCCC---------CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEee
Q 000681 1030 NNPIACWDTRFE---------KGTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1097 (1354)
Q Consensus 1030 d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~---Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s 1097 (1354)
++.|.+.|..+. ..+..+.++++++.+.++.. ++++.+.|..+++.+....... .+ ..+++ +
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~---~P-~~~a~--~ 168 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN---TP-TGVAV--D 168 (381)
T ss_pred CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC---Cc-ceEEE--C
Confidence 456666664443 46788999999988877765 6888899999888888766554 33 67788 7
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC---CeEEEEECCCC
Q 000681 1098 LDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKE 1173 (1354)
Q Consensus 1098 ~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D---g~I~VWDl~t~ 1173 (1354)
+++..++++. .++.|.+.|... ..+.. .. .+....+......+.+++++..+++.... +.+.+.|..++
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~----~~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSG----NSVVR-GS--VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCC----cceec-cc--cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 8999776665 788999999644 11110 00 00001111111237888999988887433 68999999988
Q ss_pred ceeeee-ecCCCCCCeEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000681 1174 QQMVNP-IPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1243 (1354)
Q Consensus 1174 ~~~v~~-i~~~~~~~Vtsl~~~s~~g~~L~sgs-~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~ 1243 (1354)
. .... ...... ....+ ...|+|+.+.+.. ..+.|.+.|..+.. ..........-...+..+++.+.
T Consensus 242 ~-v~~~~~~~~~~-~~~~v-~~~p~g~~~yv~~~~~~~V~vid~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 242 N-VTATDLPVGSG-APRGV-AVDPAGKAAYVANSQGGTVSVIDGATDR-VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred e-EEEeccccccC-CCCce-eECCCCCEEEEEecCCCeEEEEeCCCCc-eeeeecccccccccceeccceee
Confidence 7 4443 333332 24445 5678888887774 45889999998876 44433333222234666666554
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.3 Score=54.45 Aligned_cols=185 Identities=22% Similarity=0.227 Sum_probs=113.8
Q ss_pred hhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhc
Q 000681 473 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 552 (1354)
Q Consensus 473 ~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L 552 (1354)
++.|.|||.-|-..++.+. .-++.|-.-+-...+|.=++|.+ ||. -...-....+..|
T Consensus 19 l~~r~rALf~Lr~l~~~~~-----------i~~i~ka~~d~s~llkhe~ay~L---------gQ~--~~~~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA-----------IKAITKAFIDDSALLKHELAYVL---------GQM--QDEDAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCChHH-----------HHHHHHhcccchhhhccchhhhh---------hhh--ccchhhHHHHHHh
Confidence 4688999987666554433 34555655555567777778888 331 0123345667778
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHh---
Q 000681 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQ--- 629 (1354)
Q Consensus 553 ~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~--- 629 (1354)
.+.+..|..|-=++++|+.+- .....+++-++.+ ||..+||--+-+++.++=....-++
T Consensus 77 ~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~-------dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIK-------DPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred cccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhc-------CCccccchHHHHHHHHHHHhhccccccc
Confidence 777666888888999999885 3445666666665 7888888888888887731100000
Q ss_pred --------------------------------------Hhhcc----cCchhhHhhhhcCCChHHHHHHHHHHhhccccC
Q 000681 630 --------------------------------------TIGRR----ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1354)
Q Consensus 630 --------------------------------------~~~~~----~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1354)
.+.++ +.+...|..-+.|.|++.|-++.|.||.+.+.-
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ 218 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA 218 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh
Confidence 00011 112235666677788888888888888776321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHH
Q 000681 668 FDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 720 (1354)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v 720 (1354)
.+ ..+...|.. .--.||||.|.+-+|+.+.
T Consensus 219 ------------------ai---~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 219 ------------------AI---PSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred ------------------hh---HHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 00 111222222 2346999999999998764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.9 Score=48.47 Aligned_cols=242 Identities=11% Similarity=0.112 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CCCeEEEEEccCCCCcceEEeeeecccCCC-CCcccceeEEEEecCCCeEEEE-E-CC----CeEEEEEC
Q 000681 1099 DVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYAS-G-EV----SSIMLWDL 1170 (1354)
Q Consensus 1099 d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~v~~sp~~~~Lla~-g-~D----g~I~VWDl 1170 (1354)
+.++|+..+ ..+.|.|.|+.+...+.++.+.+..-.-+. ....... .+..-|+++.++++ | .+ |-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 456777776 678999999987667777764433200010 0111101 12334567777776 2 22 56888898
Q ss_pred CCCceeeeeecCCCC--CCeEEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCCeeeEeecCC
Q 000681 1171 EKEQQMVNPIPSSSD--CSISALTASQVHGGQLAAGFV--------------------DGSVRLYDVRTPDMLVCSTRPH 1228 (1354)
Q Consensus 1171 ~t~~~~v~~i~~~~~--~~Vtsl~~~s~~g~~L~sgs~--------------------DGsVrIwDlr~~~~~~~~~~~~ 1228 (1354)
++.. ....+..... ..-..+ ++++..+.+++... ..++.+||+.+.+ ..+.+.--
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDf-w~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg 241 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDF-WYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLG 241 (461)
T ss_dssp TT---EEEE--SB-TT------E-EEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-
T ss_pred cccc-ccceeccCCCCCCCCCCe-EEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecC
Confidence 8877 6666654322 224566 77888888887642 3479999999988 55555322
Q ss_pred CCCCCCeEEEEEecCCCCCE-EEEEECCCcEEEEeC-CCCC---ccEEEEecC-----------------CCCeEEEEEc
Q 000681 1229 TQQVERVVGISFQPGLDPAK-IVSASQAGDIQFLDI-RNHK---DAYLTIDAH-----------------RGSLSALAVH 1286 (1354)
Q Consensus 1229 ~~h~~~I~sv~fsp~~~g~~-Lasgs~DG~I~IWDl-~~~~---~~v~~l~~h-----------------~~~VtsLafs 1286 (1354)
....-...|.|..+....+ ++.+.-.++|..|-- ..+. +.+..+... ..-|+.+.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1122355677654411333 333334445554433 3221 122222211 2347999999
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCC----ceEEEEecc-------CCcccc-ccCCCeEEEEEecCCCEEEEEE
Q 000681 1287 RHAPIIASGS-AKQLIKVFSLEG----EQLGTIRYH-------HPSFMA-QKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1287 pdg~~Lasgs-~Dg~I~Iwd~~g----~~l~~i~~~-------h~~fl~-~~~~~V~sLafspdg~~Lasgs 1345 (1354)
.|.++|..++ .+|.|+-||++. +...++.-. |....+ .-.+...-+..|-||+.|...+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999887665 489999999653 333333220 000000 0113346788889998777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=55.92 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=74.3
Q ss_pred CCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC-----------------
Q 000681 1152 QSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG----------------- 1208 (1354)
Q Consensus 1152 ~~~~Lla~g~Dg-----~I~VWDl~t~~~-~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG----------------- 1208 (1354)
++...+.||.++ .+..||..+.+- .+..++..... . ++.. -+|.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~-~-~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS-Y-GMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc-c-cEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 455556666543 488999887650 11222221111 1 1212 2677888887653
Q ss_pred ------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEEeCCC-CC-ccEEEEe
Q 000681 1209 ------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFLDIRN-HK-DAYLTID 1274 (1354)
Q Consensus 1209 ------sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG------~I~IWDl~~-~~-~~v~~l~ 1274 (1354)
+|..||..+.+ -. ............ +++. -+ +.+.+.|+.++ .+..||..+ .. ..+..+.
T Consensus 427 ~~~~~~~ve~YDP~td~-W~-~v~~m~~~r~~~-~~~~-~~--~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNI-WE-TLPNFWTGTIRP-GVVS-HK--DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccceEEEECCCCCe-Ee-ecCCCCcccccC-cEEE-EC--CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 47788888764 11 111111001111 2222 22 67777777542 467899886 31 2222332
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCC
Q 000681 1275 AHRGSLSALAVHRHAPIIASGSAKQ--LIKVFSLEG 1308 (1354)
Q Consensus 1275 ~h~~~VtsLafspdg~~Lasgs~Dg--~I~Iwd~~g 1308 (1354)
........+.+ ++.+.++|+.|+ .+..||...
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 22222222222 678889999888 677777543
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.56 Score=58.33 Aligned_cols=119 Identities=21% Similarity=0.205 Sum_probs=76.4
Q ss_pred HHHHhhcChhhhhhhhcccChhhhhhhc----CCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCC
Q 000681 525 WTKILALDKSCQVDLVKDGGHAYFIRFL----DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSM 600 (1354)
Q Consensus 525 wa~i~~~~~~~Q~~l~k~~~~~~f~~~L----~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~ 600 (1354)
+|+|+...+ |.+.=.| ...+++.|| ..++. -.|--+|-+|+.+.++..+- -.-+..++.++++..|.
T Consensus 66 la~fv~sl~--q~d~e~D-lV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~--- 136 (892)
T KOG2025|consen 66 LARFVESLP--QLDKEED-LVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK--- 136 (892)
T ss_pred HHHHHHhhh--ccCchhh-HHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh---
Confidence 456666554 3222222 344444443 44554 56778999999998744431 11234555566667777
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhh-cCCChHHHHHHHHHHh
Q 000681 601 PNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1354)
Q Consensus 601 ~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1354)
|..|-||-=+++||.+|-++..+. +..+...+..++ +|||||||.+++.-++
T Consensus 137 ----Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 ----DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999999653331 233444555555 8999999998876654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.38 E-value=12 Score=43.01 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=131.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC------CC-ceEEEeeCCC--CCCCCeEEEEEEeeCCC------------C
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYE------ED-TLLNSFDNHD--FPDKGISKLCLVNELDV------------S 1101 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~------tg-~~l~~~~~h~--~~~~~ItsL~f~~s~d~------------~ 1101 (1354)
...-|+|+|.+.+-++....+...+||.. .. .++-++.... ......+.+.| +... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVf--N~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVF--NGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEE--eCCCceEEcCCCcccce
Confidence 35679999999888887788999999986 11 2233333211 01145677777 2222 2
Q ss_pred EEEEEeCCCeEEEEEccCCCCcceEEeeeecccC-CCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-
Q 000681 1102 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN- 1178 (1354)
Q Consensus 1102 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~-h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~- 1178 (1354)
.++.+++||+|.-|.-.. +...+...+..+.. ....|+. ++.+.-...+..|+++. ..++|.|||-.-.+ ...
T Consensus 102 ~Fif~tEdGTisaW~p~v--~~t~~~~~~~~~d~s~~gavYk-GLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPAL--GTTRMTRAEIVVDASQQGNVYK-GLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcC--CcccccccEEEEccCCCcceee-eeEEeecCCCceEEEeccCCCceEEecCcccc-ccCC
Confidence 367788999999998643 11111111111211 1233433 23333334467787774 67899999865433 110
Q ss_pred -e-----ecCCC-CCCeEEE--------EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000681 1179 -P-----IPSSS-DCSISAL--------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1243 (1354)
Q Consensus 1179 -~-----i~~~~-~~~Vtsl--------~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~ 1243 (1354)
. ++... ...|..| +...++++.=+.|..-|.|-+||..-. .++.+ ...+.-..-..|+..|.
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe-ccCCcccCCceeeeChh
Confidence 1 11100 0012222 011222333344555678999998643 44444 33334455566776553
Q ss_pred ----CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC------CCeEEEEEcC
Q 000681 1244 ----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------GSLSALAVHR 1287 (1354)
Q Consensus 1244 ----~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~------~~VtsLafsp 1287 (1354)
..+.+|+---.||+|..||..++ ..+..+.... ..++.|+|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 24677777778999999999887 4555555432 3567888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.073 Score=52.76 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=59.7
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000681 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1354)
Q Consensus 546 ~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1354)
+..+++|..++ .+..-+.+|.=|+.+++.||.|+.++-+.++-..+..+++ +++|+||--|++|+.+++..
T Consensus 46 k~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 46 KKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHh
Confidence 45566775544 3788999999999999999999999999999999999999 89999999999999998753
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.4 Score=48.99 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=102.1
Q ss_pred CeEEEEEEeeCCCCEEEEEe---CC-CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CC
Q 000681 1088 GISKLCLVNELDVSLLLVAS---CN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EV 1162 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~L~tgs---~D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~D 1162 (1354)
.+..-.| ++++..++..+ .. ..+.++++.+... ..+. ...++. . ...|+|++..++.+. .|
T Consensus 194 ~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~---~~~g~~---~----~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 194 LILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVIL---NFNGNN---G----APAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceecccc--CcCCCceEEEEEecCCCceEEEEeccCCcc--ceee---ccCCcc---C----CccCCCCCCEEEEEECCC
Confidence 3444455 45555443331 12 4588888877333 2221 122222 1 268999999988774 55
Q ss_pred Ce--EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000681 1163 SS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1163 g~--I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~-DGs--VrIwDlr~~~~~~~~~~~~~~h~~~I~s 1237 (1354)
|. |.+.|+.+.. ..+ +... . .+..--.++|+|+.++-.+. .|. |.++|.........+. .. ..-..
T Consensus 260 g~~~iy~~dl~~~~-~~~-Lt~~-~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~----~~~~~ 330 (425)
T COG0823 260 GSPDIYLMDLDGKN-LPR-LTNG-F-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SG----GGNSN 330 (425)
T ss_pred CCccEEEEcCCCCc-cee-cccC-C-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cC----CCCcC
Confidence 54 7777887766 333 3322 1 13334467899998887654 443 6666766665322221 11 11227
Q ss_pred EEEecCCCCCEEEEEECC-Cc--EEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 000681 1238 ISFQPGLDPAKIVSASQA-GD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1296 (1354)
Q Consensus 1238 v~fsp~~~g~~Lasgs~D-G~--I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs 1296 (1354)
-.|+|+ |++|+..+.. |. |.+.|+.++. .++.+. +......-.|.+++..+...+
T Consensus 331 p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~-~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 331 PVWSPD--GDKIVFESSSGGQWDIDKNDLASGG-KIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCCC--CCEEEEEeccCCceeeEEeccCCCC-cEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 788999 8888777643 44 7777777663 233332 333344567788888665443
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.44 Score=59.85 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=95.1
Q ss_pred HHHHhhccCchhhh-hHHHHHHHHHhhcChhhhhhhhcccChhhhhhh---cCCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000681 505 YVLKLLQTTTPELR-QILVFIWTKILALDKSCQVDLVKDGGHAYFIRF---LDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1354)
Q Consensus 505 yvlklL~s~~~elr-~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~---L~~~~~~~~~r~~~af~La~l~~~~~~gq 580 (1354)
-...+|.|....+| --+=+|+|.|...+- . -.||-.+ ....+ .|.|.+.-+-|=+.-+.-+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v---------S~~Fp~VVKNVaskn--~EVKkLVyvYLlrYAEeqpd-- 104 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V---------SLLFPAVVKNVASKN--IEVKKLVYVYLLRYAEEQPD-- 104 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-H---------HHHHHHHHHHhhccC--HHHHHHHHHHHHHHhhcCCC--
Confidence 45678887744333 344799998888753 2 2244433 33444 57877665555333322221
Q ss_pred HHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHH
Q 000681 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1354)
.++ =-++.+-.-|. ||+|++|+|++=.|+-+ |.-.|-.-+...+-++..|++|.||+.+..|+
T Consensus 105 -LAL--LSIntfQk~L~-------DpN~LiRasALRvlSsI-------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AI 167 (968)
T KOG1060|consen 105 -LAL--LSINTFQKALK-------DPNQLIRASALRVLSSI-------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAI 167 (968)
T ss_pred -cee--eeHHHHHhhhc-------CCcHHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 110 01344555677 99999999999888732 22222222223444677899999999999999
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHH
Q 000681 661 GTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 716 (1354)
Q Consensus 661 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l 716 (1354)
-.+-+-.. + +. ..+...+=.++.|-+|.|---+|.++
T Consensus 168 pKLYsLd~----------e---~k------~qL~e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 168 PKLYSLDP----------E---QK------DQLEEVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHHhcCCh----------h---hH------HHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 99874321 0 11 11222233355899999887777654
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.04 Score=41.17 Aligned_cols=25 Identities=44% Similarity=0.756 Sum_probs=22.3
Q ss_pred hHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 640 IYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
.++.+++|++|+||.+++.+|+.+.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999987
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.7 Score=55.42 Aligned_cols=189 Identities=10% Similarity=0.085 Sum_probs=93.8
Q ss_pred CCCEEEEEECC------CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCC-----eEEEEEccCC
Q 000681 1052 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQ 1120 (1354)
Q Consensus 1052 dg~~Latgs~D------g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG-----~IrIWdl~~~ 1120 (1354)
++.+.++|+.+ ..+..||..++.-.. +..-..+.... +++. -++.+.+.||.+| .+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~-~~~~---~~g~IYviGG~~~~~~~~sve~Ydp~~- 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRF-SLAV---IDDTIYAIGGQNGTNVERTIECYTMGD- 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhce-eEEE---ECCEEEEECCcCCCCCCceEEEEECCC-
Confidence 56667777643 246778877654321 11111000122 2222 3677778887764 377888755
Q ss_pred CCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC-----------------------CeEEEEECCCCce-e
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-----------------------SSIMLWDLEKEQQ-M 1176 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D-----------------------g~I~VWDl~t~~~-~ 1176 (1354)
+... .+.....+....+. +.. ++...+.||.+ ..|..||.++.+- .
T Consensus 377 -~~W~------~~~~mp~~r~~~~~-~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 377 -DKWK------MLPDMPIALSSYGM-CVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred -CeEE------ECCCCCcccccccE-EEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 2222 22222222222111 121 44555556543 3477888887650 1
Q ss_pred eeeecCCCCCCeEEEEEEcCCCCEEEEEECCC------eEEEEECCC-CCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1177 VNPIPSSSDCSISALTASQVHGGQLAAGFVDG------SVRLYDVRT-PDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1177 v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG------sVrIwDlr~-~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
+..+...... .+++.. ++++.+.|+.++ .|..||..+ .+ -. ..............+.+ + +.+.
T Consensus 447 v~~m~~~r~~--~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-W~-~~~~m~~~r~~~~~~~~--~--~~iy 516 (557)
T PHA02713 447 LPNFWTGTIR--PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-WE-LITTTESRLSALHTILH--D--NTIM 516 (557)
T ss_pred cCCCCccccc--CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC-ee-EccccCcccccceeEEE--C--CEEE
Confidence 2222211111 122122 577778887642 467899887 44 21 11122211122222222 3 7899
Q ss_pred EEEECCC--cEEEEeCCCC
Q 000681 1250 VSASQAG--DIQFLDIRNH 1266 (1354)
Q Consensus 1250 asgs~DG--~I~IWDl~~~ 1266 (1354)
++|+.|| .+..||..+.
T Consensus 517 v~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEeeecceeehhhcCcccc
Confidence 9999888 6778888765
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.068 Score=39.92 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000681 588 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1354)
Q Consensus 588 ~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1354)
++..++++++ |++|+||.+++.|||.+.+
T Consensus 1 llp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 3567888898 9999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.44 Score=62.48 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=110.4
Q ss_pred ChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhc---ccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcc
Q 000681 502 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVK---DGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 578 (1354)
Q Consensus 502 ifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k---~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~ 578 (1354)
+|+++-++|||+.--.|.-..--++.|--. |+ +.++ +..+..-++.|+|++ |..|..||++++++-.|+..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~-~~m~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEG---CS-DVMIGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cH-HHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcH
Confidence 488999999988554444333334444332 33 2222 456677788888877 69999999999999999877
Q ss_pred hhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchh-hHhhhhcCCChHHHHHHH
Q 000681 579 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA-IYVPLLSEPQPEVRASAV 657 (1354)
Q Consensus 579 gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~-~l~~ll~D~sP~VRaa~v 657 (1354)
.=.--....+...++..+.+ ..+|.|.+-++-||=.|.++.+...-..+=+.+.+ +|..|++.+.|.||..+|
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDS------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcc------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 64333455556666666653 55799999999999999888766554444444555 777788999999999999
Q ss_pred HHHhhccccCC
Q 000681 658 FSLGTLLDIGF 668 (1354)
Q Consensus 658 ~aL~~~i~~~~ 668 (1354)
.|||.......
T Consensus 497 taIasvA~AA~ 507 (1075)
T KOG2171|consen 497 TAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHh
Confidence 99999875443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=5.1 Score=49.22 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=98.9
Q ss_pred ceEEEeeCCCcEEEEeCCCCCCeEEEEEcCCCCEEEEEE---CC-CcEEEEECCCCceEEEe--eCCCCCCCCeEEEEEE
Q 000681 1022 FDLAVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAAD---EN-ERIKIWNYEEDTLLNSF--DNHDFPDKGISKLCLV 1095 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~~~I~sL~fspdg~~Latgs---~D-g~I~IWd~~tg~~l~~~--~~h~~~~~~ItsL~f~ 1095 (1354)
+.+...+.|+....-=......+..-+|+|+++.++..+ .. ..+.++++++++..... .++. ..-.|
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~------~~P~f- 245 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN------GAPAF- 245 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc------CCccC-
Confidence 345555544422111122235667778999998665542 22 35889999987554443 3333 34466
Q ss_pred eeCCCCEEEE-EeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-CC--eEEEEECC
Q 000681 1096 NELDVSLLLV-ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VS--SIMLWDLE 1171 (1354)
Q Consensus 1096 ~s~d~~~L~t-gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~-Dg--~I~VWDl~ 1171 (1354)
++||+.|+- ...||...||-.....+. +. .+.... .+.. .-.|+|+|..++-+++ .| .|.++|.+
T Consensus 246 -spDG~~l~f~~~rdg~~~iy~~dl~~~~--~~----~Lt~~~-gi~~---~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~ 314 (425)
T COG0823 246 -SPDGSKLAFSSSRDGSPDIYLMDLDGKN--LP----RLTNGF-GINT---SPSWSPDGSKIVFTSDRGGRPQIYLYDLE 314 (425)
T ss_pred -CCCCCEEEEEECCCCCccEEEEcCCCCc--ce----ecccCC-cccc---CccCCCCCCEEEEEeCCCCCcceEEECCC
Confidence 678876654 456777666644331122 11 122222 2222 2679999999888753 34 47777777
Q ss_pred CCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC-Ce--EEEEECCCCC
Q 000681 1172 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GS--VRLYDVRTPD 1219 (1354)
Q Consensus 1172 t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D-Gs--VrIwDlr~~~ 1219 (1354)
... . ..+........ .-.++++|++++..+.. |. |.+.|+.++.
T Consensus 315 g~~-~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 315 GSQ-V-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCc-e-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 776 2 33332222212 22578899988877643 44 6677776655
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.24 Score=60.19 Aligned_cols=122 Identities=24% Similarity=0.210 Sum_probs=83.9
Q ss_pred ChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000681 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1354)
Q Consensus 544 ~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1354)
+...|+..|...+. ++.+..+++.|... . ...+++.++..|. |+++.||..++-+||.+-.
T Consensus 55 a~~~L~~aL~~d~~-~ev~~~aa~al~~~---~--------~~~~~~~L~~~L~-------d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 55 ATELLVSALAEADE-PGRVACAALALLAQ---E--------DALDLRSVLAVLQ-------AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHHHhhCCC-hhHHHHHHHHHhcc---C--------ChHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCc
Confidence 34566777743332 57777666555322 0 1123788888888 7888899999999996443
Q ss_pred cchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccC
Q 000681 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1354)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1354)
. .....|..+|+|..|.||++++-+++..-.. ....+...+.|
T Consensus 116 ~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~--------------------------~~~~L~~~L~d 158 (410)
T TIGR02270 116 R-----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD--------------------------PGPALEAALTH 158 (410)
T ss_pred h-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------------------------hHHHHHHHhcC
Confidence 2 2234688999999999999999888763310 01245556679
Q ss_pred CChhhhHHHHHHHHHHHH
Q 000681 704 GSPLVRAEVAVALARFAF 721 (1354)
Q Consensus 704 ~sp~VR~e~~~~l~~~v~ 721 (1354)
.+|.||.+++..++++-.
T Consensus 159 ~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 159 EDALVRAAALRALGELPR 176 (410)
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 999999999999987643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.59 Score=52.18 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch-HHhHhhcccCchh
Q 000681 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRADAPA 639 (1354)
Q Consensus 561 ~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~-~~~~~~~~~~~~~ 639 (1354)
.-.-+|.+|+.+....... ..-+-..++..++..+. ++..-+|+.+.-||-.++.... ..+ -...
T Consensus 69 v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~ 134 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPK------ILLE 134 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--H------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHH------HHHH
Confidence 3445667777777665554 22234556777788888 7889999999999999998755 221 1144
Q ss_pred hHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHH
Q 000681 640 IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1354)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~ 719 (1354)
.+...+++.+|.||.+++-.|..++....... ... ... ..=..+...+...+.|+.|.||+.+-..+..+
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~-------~~l-~~~--~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWGSDS-------SVL-QKS--AFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG---H--HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHccchH-------hhh-ccc--chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 67778899999999999999999996653100 000 000 00134556677789999999999999888877
Q ss_pred HHhhh
Q 000681 720 AFGHK 724 (1354)
Q Consensus 720 v~~~~ 724 (1354)
...+.
T Consensus 205 ~~~~~ 209 (228)
T PF12348_consen 205 YSHFP 209 (228)
T ss_dssp HHHH-
T ss_pred HHHCC
Confidence 65554
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=93.92 E-value=4.7 Score=52.24 Aligned_cols=240 Identities=18% Similarity=0.141 Sum_probs=152.6
Q ss_pred CcchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccC-chhhhhHHHHHHHHHhhcChhhhhh
Q 000681 460 PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVD 538 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FIwa~i~~~~~~~Q~~ 538 (1354)
-|.+|-+..+|..+.++.-++.+|-.. ....-++.+....+++|-++++|-+. ..+.. .-+-.++.-|+.++.+++.
T Consensus 371 ~GlIPkLv~LL~d~~~~~val~iLy~L-S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDPNFREVALKILYNL-SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQL 448 (708)
T ss_pred CCCcHHHHHHhCCCchHHHHHHHHHHh-ccCHhhHHHHhhcchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHH
Confidence 478999999998888887777765543 34556777777778999999977643 32222 2222333446667666666
Q ss_pred hhcccChhhhhhhcCC---------------CCC------------------chHHHHHHHHHHHHHhcCC-cchhH--H
Q 000681 539 LVKDGGHAYFIRFLDS---------------MEA------------------YPEQRAMAAFVLAVIVDGH-RRGQE--A 582 (1354)
Q Consensus 539 l~k~~~~~~f~~~L~~---------------~~~------------------~~~~r~~~af~La~l~~~~-~~gq~--~ 582 (1354)
+++.+|.+.++..... .+. ..+---+.+=|||.+-+=- +.-.| .
T Consensus 449 m~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 449 MCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHH
Confidence 6676666544432211 010 0011123444555553221 11122 3
Q ss_pred HHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCC--hHHHHHHHHHH
Q 000681 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ--PEVRASAVFSL 660 (1354)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s--P~VRaa~v~aL 660 (1354)
+-+.+++..+..+|... ...+.+..=+++.+|++..+..-|.. -.+.++...|..+|+... -|.=--++|++
T Consensus 529 l~~~~llp~L~~~L~~g-----~~~dDl~LE~Vi~~gtla~d~~~A~l-L~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPG-----ASEDDLLLEVVILLGTLASDPECAPL-LAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred HHhCCHHHHHHHHhCCC-----CCChHHHHHHHHHHHHHHCCHHHHHH-HHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 34568889999988732 23456777788999999976544444 456777778999997655 66677789999
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHH
Q 000681 661 GTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAF 721 (1354)
Q Consensus 661 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~ 721 (1354)
..|+-- .++.+.+-.+..+...++.+..|..+.||+-.=..|..+..
T Consensus 603 ~~ll~h--------------~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 603 YQLLFH--------------EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHcC--------------hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999922 12333344456677889999999999999998888876653
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.61 Score=60.66 Aligned_cols=191 Identities=9% Similarity=0.015 Sum_probs=116.9
Q ss_pred EEecCCCeEEEEECCCeEEEEECCC--------Cc-------eeeeeecCCCCCCeEEEEEEcCCCCEEEEE--ECCCeE
Q 000681 1148 DWQQQSGYLYASGEVSSIMLWDLEK--------EQ-------QMVNPIPSSSDCSISALTASQVHGGQLAAG--FVDGSV 1210 (1354)
Q Consensus 1148 ~~sp~~~~Lla~g~Dg~I~VWDl~t--------~~-------~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sg--s~DGsV 1210 (1354)
+.++.-+.+++++..+.+.|+-... .. ....++..+...+|..+ .+.+|+...++. +.+-.|
T Consensus 48 a~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~-v~~~D~t~s~v~~tsng~~v 126 (1405)
T KOG3630|consen 48 AISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIF-VCFHDATDSVVVSTSNGEAV 126 (1405)
T ss_pred hcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEE-EeccCCceEEEEEecCCceE
Confidence 3344555666666666555553221 11 01234444555556666 334455544433 334479
Q ss_pred EEEECCCCCee-------eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEE
Q 000681 1211 RLYDVRTPDML-------VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1211 rIwDlr~~~~~-------~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsL 1283 (1354)
..||++.-... .+.-...........++.|.|. -....+....|+.|++..+......+..+. -....+++
T Consensus 127 ~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav 204 (1405)
T KOG3630|consen 127 YSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV 204 (1405)
T ss_pred EEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence 99999853211 1111111122345668888887 345567777899999988765432333322 34568999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1284 AVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1284 afspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
+|+|.|+.++.|-..|++.-|...++....+.. .... ....|.++.|-....+|++-+
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp~~---e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PPVE---ENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecccceeecccC-CCcC---CCcceeEEEEecceeEEEEec
Confidence 999999999999999999999988777666654 3321 147899999988777776543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.22 Score=64.36 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000681 1153 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1153 ~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~ 1232 (1354)
+..+++|++.|.|-..|+...- +-.....+...+|+++ +++.+|..++.|..+|.|.+||+..++ +.+.+..+....
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsv-afn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSV-AFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPV 175 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceee-EecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCcc
Confidence 5667888888999999987654 3223334556679999 788999999999999999999999887 455443333222
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000681 1233 ERVVGISFQPGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1233 ~~I~sv~fsp~~~g~~Lasgs~DG~I~IWD 1262 (1354)
..|.-+.+..+ +..++++...|. +|.
T Consensus 176 t~vi~v~~t~~--nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTSQ--NSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeCC--CcEEEEccCCCc--eEE
Confidence 33334444444 557888887776 454
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.9 Score=55.12 Aligned_cols=177 Identities=20% Similarity=0.238 Sum_probs=91.5
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeee--eecCC-CCCCeEEEEEEcCCCCEEEEEECCCe-----EEEEECCC
Q 000681 1152 QSGYLYASGEV------SSIMLWDLEKEQQMVN--PIPSS-SDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRT 1217 (1354)
Q Consensus 1152 ~~~~Lla~g~D------g~I~VWDl~t~~~~v~--~i~~~-~~~~Vtsl~~~s~~g~~L~sgs~DGs-----VrIwDlr~ 1217 (1354)
++...++||.| ..+..||.++.+ -.. .+... ....+..+ +|.+.++|+.||. |..||.++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCC
Confidence 45556666766 357888888766 222 12111 11123333 7889999999974 88889887
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEEeCCCCC-ccEEEEecCCCCeEEEEEcCCCC
Q 000681 1218 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP 1290 (1354)
Q Consensus 1218 ~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG------~I~IWDl~~~~-~~v~~l~~h~~~VtsLafspdg~ 1290 (1354)
.+- ....... ..........- +|.+.++|+.++ ++..||..++. ..+..+..-..... ++. -++.
T Consensus 406 ~~W--~~va~m~---~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~ 477 (571)
T KOG4441|consen 406 NKW--TPVAPML---TRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGK 477 (571)
T ss_pred Ccc--cccCCCC---cceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCE
Confidence 651 1111111 12222222222 378888888654 47788887652 11111111111111 222 2567
Q ss_pred EEEEEeCCC-----cEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000681 1291 IIASGSAKQ-----LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1291 ~Lasgs~Dg-----~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
+.+.||.|+ +|..||.....-..+.. - ....+.+.... -++...++|+.||.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m----~~~rs~~g~~~--~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAP-M----TSPRSAVGVVV--LGGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEccc-C----ccccccccEEE--ECCEEEEEecccCc
Confidence 888888776 36778855444433322 1 11112222222 25677788877764
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.87 E-value=2 Score=51.59 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=108.0
Q ss_pred CCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCC
Q 000681 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1109 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~ 1187 (1354)
+..|-|+.... ++..+...+++.+....+......-.+-..++.+.|+..| .-..++--|++.++ .+..+..+.+.
T Consensus 436 ~n~IGVFk~~d-e~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv- 512 (776)
T COG5167 436 GNSIGVFKNTD-EGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV- 512 (776)
T ss_pred CCeeeeEeccC-CcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccce-eeeEeecCCcc-
Confidence 45677777644 2334444333333322222111122255666777776654 55678888999999 88888877654
Q ss_pred eEEEEEEcCC-------CCEEEEEECCCeEEEEECCCCCeeeEe--ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE
Q 000681 1188 ISALTASQVH-------GGQLAAGFVDGSVRLYDVRTPDMLVCS--TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1258 (1354)
Q Consensus 1188 Vtsl~~~s~~-------g~~L~sgs~DGsVrIwDlr~~~~~~~~--~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I 1258 (1354)
| + .+.|. ...-++|-.+..|.-.|.|-...-+.. .+... ......+..-. ...+++.||..|.|
T Consensus 513 v--V-qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~-tKn~Fss~~tT---esGyIa~as~kGDi 585 (776)
T COG5167 513 V--V-QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK-TKNKFSSGMTT---ESGYIAAASRKGDI 585 (776)
T ss_pred e--e-ecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc-ccccccccccc---cCceEEEecCCCce
Confidence 2 1 22332 123345556666666687744322221 11111 11122222222 25689999999999
Q ss_pred EEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1259 QFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1259 ~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
++||--.. .....+.+-...|..+..+.+|.++.+.+. .++.+-|+
T Consensus 586 rLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 586 RLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 99996543 344456666778999999999997766654 56777774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=14 Score=43.47 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=116.5
Q ss_pred CCCC-EEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000681 1098 LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1176 (1354)
Q Consensus 1098 ~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~ 1176 (1354)
++.. ++.+--..+.|.-|+..+ +..+.. .+...+.+ ...-..++.|+++. .| +.+++.+++. .
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~-------~~p~~~~~----~~~~d~~g~Lv~~~-~g-~~~~~~~~~~-~ 97 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPET--GKKRVF-------PSPGGFSS----GALIDAGGRLIACE-HG-VRLLDPDTGG-K 97 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCc--CceEEE-------ECCCCccc----ceeecCCCeEEEEc-cc-cEEEeccCCc-e
Confidence 3444 444444566777777654 322222 11122233 22222445555543 33 5666665554 3
Q ss_pred eeeec----CCCCCCeEEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000681 1177 VNPIP----SSSDCSISALTASQVHGGQLAAGFV-----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1177 v~~i~----~~~~~~Vtsl~~~s~~g~~L~sgs~-----------DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fs 1241 (1354)
+..+. .......+.+ ...++|.+.++.-. -|.|+.+|. .+. ..+.... +-..-+.++|+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~-~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~---~~~~~NGla~S 171 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDG-VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDD---DLTIPNGLAFS 171 (307)
T ss_pred eEEeccccCCCCcCCCCce-eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecC---cEEecCceEEC
Confidence 22221 1111223444 34566665554333 134555554 233 2332222 22456789999
Q ss_pred cCCCCCEEEEEEC-CCcEEEEeCCC--C---C-ccEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCceEEE
Q 000681 1242 PGLDPAKIVSASQ-AGDIQFLDIRN--H---K-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ-LIKVFSLEGEQLGT 1313 (1354)
Q Consensus 1242 p~~~g~~Lasgs~-DG~I~IWDl~~--~---~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg-~I~Iwd~~g~~l~~ 1313 (1354)
|+ ++.+..+.. .+.|.-|++.. + . .....+....+..-.++...+|.+.+++-.+| .|.+|+.+|+.+..
T Consensus 172 pD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 172 PD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred CC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEE
Confidence 99 766666654 47888887752 1 0 11222223456667788888998876555544 99999999999999
Q ss_pred EeccCCccccccCCCeEEEEEe-cCCCEEEEEEC
Q 000681 1314 IRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAGSA 1346 (1354)
Q Consensus 1314 i~~~h~~fl~~~~~~V~sLafs-pdg~~Lasgs~ 1346 (1354)
++. .. ..+++++|- |+.+.|.+.+.
T Consensus 250 i~l-P~-------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 250 IKL-PV-------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEC-CC-------CCCccceEeCCCcCEEEEEec
Confidence 987 32 467888885 44555544443
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.3 Score=60.99 Aligned_cols=208 Identities=19% Similarity=0.230 Sum_probs=136.8
Q ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcC
Q 000681 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 553 (1354)
Q Consensus 474 ~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~ 553 (1354)
++-|-++.-+++++|-.+ ...++.|.++||+.++. |+|-+..|..|.++=..-+..-+++..|..|..=+.
T Consensus 309 ~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~D---r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~ 379 (690)
T KOG1243|consen 309 SDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPD---RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFL 379 (690)
T ss_pred hhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcc---hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcc
Confidence 466777788888888887 55788999999999874 355556666666654444445678888888888776
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhc
Q 000681 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGR 633 (1354)
Q Consensus 554 ~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~ 633 (1354)
+.+ +-+|.-..-+++.+.--. ++. -++.+++..+...-. |..+.+|+|..+|||+.-......+ .
T Consensus 380 DTn--~~Lre~Tlksm~~La~kL--~~~-~Ln~Ellr~~ar~q~-------d~~~~irtntticlgki~~~l~~~~---R 444 (690)
T KOG1243|consen 380 DTN--ATLREQTLKSMAVLAPKL--SKR-NLNGELLRYLARLQP-------DEHGGIRTNTTICLGKIAPHLAASV---R 444 (690)
T ss_pred cCC--HHHHHHHHHHHHHHHhhh--chh-hhcHHHHHHHHhhCc-------cccCcccccceeeecccccccchhh---h
Confidence 665 355553333333332111 122 246666655555433 7889999999999999876543333 2
Q ss_pred ccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHH
Q 000681 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 713 (1354)
Q Consensus 634 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~ 713 (1354)
.......+...+.|+-+--|.|.|++|......+ +..+ +-..+...+..+.-|....||...-
T Consensus 445 ~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--------------~~~~---va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 445 KRVLASAFTRALKDPFVPARKAGVLALAATQEYF--------------DQSE---VANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccccchhhhhhhcCCCCCchhhhhHHHhhccccc--------------chhh---hhhhccccccccccCcccchhhHHH
Confidence 2223345667899999999999999998766322 1111 1223344455567799999999888
Q ss_pred HHHHHHHHh
Q 000681 714 VALARFAFG 722 (1354)
Q Consensus 714 ~~l~~~v~~ 722 (1354)
.++..+...
T Consensus 508 ~~i~~fl~k 516 (690)
T KOG1243|consen 508 KAIRQFLEK 516 (690)
T ss_pred HHHHHHHhh
Confidence 777766543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.52 Score=52.61 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhcH-HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH-HhHhh---c
Q 000681 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGL-IHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE-AQTIG---R 633 (1354)
Q Consensus 559 ~~~r~~~af~La~l~~~~~~gq~~~~~~~~-~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~-~~~~~---~ 633 (1354)
.-.|+-+.-+|-.+|+.... ...+ ...+...++ +.+|.+|.-++-+|..++...+. ..... .
T Consensus 108 ~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~-------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCSY------SPKILLEILSQGLK-------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 46777777788888866551 2233 666667777 88999999999999999988761 12111 1
Q ss_pred ccCchhhHhhhhcCCChHHHHHHHHHHhhccc
Q 000681 634 RADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 634 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
-..+...+..++.|+.|+||+++--++..|..
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 13456688899999999999999888888863
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.56 E-value=13 Score=49.18 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEEeCCCcEEEEe-CCCceEEEEe
Q 000681 1291 IIASGSAKQLIKVFS-LEGEQLGTIR 1315 (1354)
Q Consensus 1291 ~Lasgs~Dg~I~Iwd-~~g~~l~~i~ 1315 (1354)
.++.++.+|.+.++| .+|+.+..++
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 788999999999999 6788776654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.56 Score=60.20 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=104.4
Q ss_pred chhhhhHHHHHHHHHhhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHH
Q 000681 514 TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 593 (1354)
Q Consensus 514 ~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~ 593 (1354)
..+-+.-+=+|+|.+...+. -+ .++.-.++.....+ .|+|.++=+=|=..-+..|+-+.. +.+...
T Consensus 33 ~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd--~ElKrL~ylYl~~yak~~P~~~lL-----avNti~ 98 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRD--VELKRLLYLYLERYAKLKPELALL-----AVNTIQ 98 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhccCHHHHHH-----HHHHHH
Confidence 33344445677777666543 11 12233344444334 699999988776655555532222 223333
Q ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCC
Q 000681 594 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673 (1354)
Q Consensus 594 ~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~ 673 (1354)
.=|+ |++|++|..++=.|+.+=.. .+-..+...+-.+++|++|.||+.|++|+..+-....+
T Consensus 99 kDl~-------d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---- 160 (757)
T COG5096 99 KDLQ-------DPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---- 160 (757)
T ss_pred hhcc-------CCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh----
Confidence 4455 89999999998888866433 23344555788899999999999999999999743211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHh
Q 000681 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 674 ~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
.--|.+....+-.++.|.+|.|-..++.++.-+...
T Consensus 161 -------------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 -------------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred -------------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 111333344455577899999999999888665444
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.2 Score=46.93 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=86.1
Q ss_pred EEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000681 1147 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g-~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~ 1225 (1354)
..|.++.+.|+-+. ..+.|.-||..+++ ...+..... +.++......+. |+++ .. .+.++|..++.......
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~--~~~~~~p~~--~~~~~~~d~~g~-Lv~~-~~-g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK--KRVFPSPGG--FSSGALIDAGGR-LIAC-EH-GVRLLDPDTGGKITLLA 102 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc--eEEEECCCC--cccceeecCCCe-EEEE-cc-ccEEEeccCCceeEEec
Confidence 45667777666664 67889999998775 333333222 455544544443 3333 23 35666765554211211
Q ss_pred cCCCC-CCCCeEEEEEecCCCCCEEEEEEC-----------CCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEE
Q 000681 1226 RPHTQ-QVERVVGISFQPGLDPAKIVSASQ-----------AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293 (1354)
Q Consensus 1226 ~~~~~-h~~~I~sv~fsp~~~g~~Lasgs~-----------DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~La 1293 (1354)
....+ .....+.+.+.|+ |.+.++... -|.|+-+|. .+ ..++.+..+-..-+.|+||||++.|.
T Consensus 103 ~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred cccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEE
Confidence 12111 2245667888888 776665444 133444443 23 35555555555567899999998766
Q ss_pred EE-eCCCcEEEEeCC
Q 000681 1294 SG-SAKQLIKVFSLE 1307 (1354)
Q Consensus 1294 sg-s~Dg~I~Iwd~~ 1307 (1354)
.. +..+.|.-|+++
T Consensus 179 ~aDT~~~~i~r~~~d 193 (307)
T COG3386 179 VADTPANRIHRYDLD 193 (307)
T ss_pred EEeCCCCeEEEEecC
Confidence 66 445778887754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.17 E-value=24 Score=42.32 Aligned_cols=263 Identities=10% Similarity=0.035 Sum_probs=116.4
Q ss_pred CCCCceEEEe-eCCC--cEEEEeCCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCC
Q 000681 1018 SCNSFDLAVS-KLNN--PIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF 1084 (1354)
Q Consensus 1018 ~~~~~~L~~s-~~d~--~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~ 1084 (1354)
..++..++.. ..++ ++..-|+.++ .......++++++.++....+..|+--|+++.+....+....
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~- 122 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD- 122 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T-
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc-
Confidence 3445444443 3344 5555566554 112235567877877666556788888988887666666555
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEeCCC----------------------eEEEEEccCCCCcceEEeeeecccCCCCCccc
Q 000681 1085 PDKGISKLCLVNELDVSLLLVASCNG----------------------NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1142 (1354)
Q Consensus 1085 ~~~~ItsL~f~~s~d~~~L~tgs~DG----------------------~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1142 (1354)
.-+-...|+-+.++..++..-... .|.--|+.+ ++.+.+ ......+..
T Consensus 123 --~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v------~~~~~wlgH 192 (386)
T PF14583_consen 123 --DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVV------FEDTDWLGH 192 (386)
T ss_dssp --TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEE------EEESS-EEE
T ss_pred --ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEE------EecCccccC
Confidence 445456664345666654432110 111122222 322222 111112222
Q ss_pred ceeEEEEecCCCeEEEEEC----CCe-EEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEE--C---CCeEEE
Q 000681 1143 SNVVVDWQQQSGYLYASGE----VSS-IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF--V---DGSVRL 1212 (1354)
Q Consensus 1143 i~~~v~~sp~~~~Lla~g~----Dg~-I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs--~---DGsVrI 1212 (1354)
+.|+|....+++=+- +.. -|||-+++.....+.+..+....+..=.+|.++|..+.--+ . +..|.-
T Consensus 193 ----~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 193 ----VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp ----EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred ----cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 677887777666542 222 36776654332344444444433444457888988765432 2 335777
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC----------------cEEEEeCCCCCccEEEEecC
Q 000681 1213 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG----------------DIQFLDIRNHKDAYLTIDAH 1276 (1354)
Q Consensus 1213 wDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG----------------~I~IWDl~~~~~~v~~l~~h 1276 (1354)
+|..+++.. ... .. .+...+..+++ |.+++-=+.|. .|+++++..+. ...+..|
T Consensus 269 ~d~~t~~~~-~~~-~~----p~~~H~~ss~D--g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~--~~~l~~h 338 (386)
T PF14583_consen 269 YDPDTGERR-RLM-EM----PWCSHFMSSPD--GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR--FRKLARH 338 (386)
T ss_dssp E-TTT--EE-EEE-EE-----SEEEEEE-TT--SSEEEEEE-------------------EEEEEETTTTE--EEEEEE-
T ss_pred eCCCCCCce-EEE-eC----CceeeeEEcCC--CCEEEecCCCCCccccccccceecCCcEEEEeccccCc--eeeeeec
Confidence 888877632 111 11 23333334455 77776544432 46677777652 2222223
Q ss_pred CC-----------CeEEEEEcCCCCE-EEEEeCCCcEEEEe
Q 000681 1277 RG-----------SLSALAVHRHAPI-IASGSAKQLIKVFS 1305 (1354)
Q Consensus 1277 ~~-----------~VtsLafspdg~~-Lasgs~Dg~I~Iwd 1305 (1354)
.. .=....|+|||+. |.++...|...||-
T Consensus 339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 11 1245789999995 45566677777774
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=27 Score=42.40 Aligned_cols=242 Identities=13% Similarity=0.174 Sum_probs=142.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEeCCCeEEEEEccC
Q 000681 1042 KGTKTALLQPFSPIVVAADE-NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~-Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~-~L~tgs~DG~IrIWdl~~ 1119 (1354)
..+..+...+++..+.+... ...+.+-+.............. ..-..+.. ++.+. ..++...++.|.+.|...
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---~~p~~i~v--~~~~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---VYPAGVAV--NPAGNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---ccccceee--CCCCCeEEEecCCCCeEEEEcCcc
Confidence 45677888888865544432 2244444444222111111110 22334555 45666 445555568999999644
Q ss_pred CCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeEEEEEEcC
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~---Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~ 1196 (1354)
... .... ..+. ....++++++++.++++.. ++.+.+.|..+.+ ....++.... + ..+ ...+
T Consensus 106 ~~~-~~~~-----~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~-P-~~~-a~~p 169 (381)
T COG3391 106 NTV-LGSI-----PVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNT-P-TGV-AVDP 169 (381)
T ss_pred cce-eeEe-----eecc------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCC-c-ceE-EECC
Confidence 111 1100 1111 1223889999999998854 7899999999888 7777655432 2 666 6778
Q ss_pred CCCEEEE-EECCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccEE
Q 000681 1197 HGGQLAA-GFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1197 ~g~~L~s-gs~DGsVrIwDlr~~~~~~~-~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---G~I~IWDl~~~~~~v~ 1271 (1354)
+|+.++. -..++.|.+.|..... ..+ .......-...-..+.+.|+ |..+...... +.+...|..++ ....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~--g~~~yV~~~~~~~~~v~~id~~~~-~v~~ 245 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPD--GNRVYVANDGSGSNNVLKIDTATG-NVTA 245 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCC--CCEEEEEeccCCCceEEEEeCCCc-eEEE
Confidence 8885554 4588999999977665 221 00000111234567888998 7755554433 58999998877 2333
Q ss_pred E-EecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCC
Q 000681 1272 T-IDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEG 1308 (1354)
Q Consensus 1272 ~-l~~h~~~VtsLafspdg~~Lasg-s~Dg~I~Iwd~~g 1308 (1354)
. ..........+.++|+|..+... +..+.+.+-|...
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 2 12111145678999999988777 4447888888543
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=11 Score=41.70 Aligned_cols=101 Identities=13% Similarity=0.227 Sum_probs=63.2
Q ss_pred EEEecCCCeEEEE-ECCCeEEEEE--CCCCc----eeeeeecCC---CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000681 1147 VDWQQQSGYLYAS-GEVSSIMLWD--LEKEQ----QMVNPIPSS---SDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1216 (1354)
Q Consensus 1147 v~~sp~~~~Lla~-g~Dg~I~VWD--l~t~~----~~v~~i~~~---~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr 1216 (1354)
++|+.+...+... +.+-.|.-|| ..++. ..+..++.. ....--.+ ....+|++.++....|+|..+|..
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm-~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGM-TIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcc-eEccCCcEEEEEecCcEEEEECCC
Confidence 8898777777766 5677787788 44443 022233221 00011223 335589999999999999999999
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000681 1217 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1253 (1354)
Q Consensus 1217 ~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs 1253 (1354)
+++.+. .++-. ...|++++|--. +-..+++.+
T Consensus 242 tGK~L~-eiklP---t~qitsccFgGk-n~d~~yvT~ 273 (310)
T KOG4499|consen 242 TGKILL-EIKLP---TPQITSCCFGGK-NLDILYVTT 273 (310)
T ss_pred CCcEEE-EEEcC---CCceEEEEecCC-CccEEEEEe
Confidence 999444 33233 378999999532 234555443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.86 E-value=1 Score=57.03 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=108.6
Q ss_pred hhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhc-ChhhhhhhhcccChhhhhhhc
Q 000681 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILAL-DKSCQVDLVKDGGHAYFIRFL 552 (1354)
Q Consensus 474 ~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~-~~~~Q~~l~k~~~~~~f~~~L 552 (1354)
..|.-|+.-.-..+-+| ..++ +-||=|+|..|.-.-|+|.| ++...+.-+- .|..+..+++ .|++=
T Consensus 28 ~kr~~a~kkvIa~Mt~G---~DvS---slF~dvvk~~~T~dlelKKl-vyLYl~nYa~~~P~~a~~avn-----t~~kD- 94 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVG---KDVS---SLFPDVVKCMQTRDLELKKL-VYLYLMNYAKGKPDLAILAVN-----TFLKD- 94 (734)
T ss_pred hhHHHHHHHHHhcCccC---cchH---hhhHHHHhhcccCCchHHHH-HHHHHHHhhccCchHHHhhhh-----hhhcc-
Confidence 34445555444455555 2222 56999999999888899998 4665554443 2333322221 12221
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhh
Q 000681 553 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 632 (1354)
Q Consensus 553 ~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~ 632 (1354)
..+..|+.|.++.=-++.+. .-.+-..+.+=|...++ |..|.+|..+++|..+|.....+ ++
T Consensus 95 -~~d~np~iR~lAlrtm~~l~-------v~~i~ey~~~Pl~~~l~-------d~~~yvRktaa~~vakl~~~~~~---~~ 156 (734)
T KOG1061|consen 95 -CEDPNPLIRALALRTMGCLR-------VDKITEYLCDPLLKCLK-------DDDPYVRKTAAVCVAKLFDIDPD---LV 156 (734)
T ss_pred -CCCCCHHHHHHHhhceeeEe-------ehHHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHhhcCChh---hc
Confidence 22333788877654333332 12234455666777788 88999999999999999976543 66
Q ss_pred cccCchhhHhhhhcCCChHHHHHHHHHHhhccccC
Q 000681 633 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1354)
Q Consensus 633 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1354)
...+..+.|-.++.|.+|+|=|.++-||.-+....
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 77888889999999999999999999999998554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.77 E-value=18 Score=41.71 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=109.6
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC------CCceeeeeecCCC----CCCeEEEEEEcCCC------------CEEEEE
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLE------KEQQMVNPIPSSS----DCSISALTASQVHG------------GQLAAG 1204 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg~I~VWDl~------t~~~~v~~i~~~~----~~~Vtsl~~~s~~g------------~~L~sg 1204 (1354)
++++|.+..-++....+...+||.. ..+..+.+++... ....+.+ .+.... ..++.+
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGi-VfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQ-VFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEE-EEeCCCceEEcCCCcccceeEEEE
Confidence 7888877666666678899999987 2222455666321 2236666 333221 247888
Q ss_pred ECCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCccEEE---EecC
Q 000681 1205 FVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLT---IDAH 1276 (1354)
Q Consensus 1205 s~DGsVrIwDlr~~~~----~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs-~DG~I~IWDl~~~~~~v~~---l~~h 1276 (1354)
++||+|.-|...-... ....+... ....--..+++.....+.+|..+. .+++|.+||-.-. ++.. +...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F~DP 183 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSFIDP 183 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCccCC
Confidence 9999999998643321 11112111 011223355555432255665554 6789999986543 1111 1100
Q ss_pred -----CCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEec----
Q 000681 1277 -----RGS-----------LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP---- 1336 (1354)
Q Consensus 1277 -----~~~-----------VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafsp---- 1336 (1354)
-.+ |+-..-.+++.-=+.|..-|.|-+||.+|+.++++.. .+ .....+.|+..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as--~g----~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS--SG----RLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc--CC----cccCCceeeeChhhhC
Confidence 000 1111112222222233445799999999999998853 22 335567777755
Q ss_pred --CCCEEEEEECCCeEEEcC
Q 000681 1337 --YQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1337 --dg~~Lasgs~Dg~V~IWd 1354 (1354)
.+.+|+---.||+|.+||
T Consensus 258 ~~sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCCCCeEEeecCCceeEEec
Confidence 345665555699999986
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.6 Score=51.87 Aligned_cols=186 Identities=22% Similarity=0.260 Sum_probs=123.2
Q ss_pred CcchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhh
Q 000681 460 PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 539 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l 539 (1354)
+...+.++++|.+....+|--.... +|... ..-.+|...++|.+.....|...++.+..+-
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~----l~~~~-----~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------- 102 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVA----LGELG-----SEEAVPLLRELLSDEDPRVRDAAADALGELG---------- 102 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHH----Hhhhc-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------
Confidence 4678889999988754444333211 11111 1223677888898888888888888442221
Q ss_pred hcccChhhhhhhcCC-CCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCC----------H
Q 000681 540 VKDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTE----------P 608 (1354)
Q Consensus 540 ~k~~~~~~f~~~L~~-~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~----------P 608 (1354)
.+..+..++..|.. .+ .-.|.-++..|+.+- ....+.-++..++ ++. +
T Consensus 103 -~~~a~~~li~~l~~d~~--~~vR~~aa~aL~~~~-----------~~~a~~~l~~~l~-------~~~~~~a~~~~~~~ 161 (335)
T COG1413 103 -DPEAVPPLVELLENDEN--EGVRAAAARALGKLG-----------DERALDPLLEALQ-------DEDSGSAAAALDAA 161 (335)
T ss_pred -ChhHHHHHHHHHHcCCc--HhHHHHHHHHHHhcC-----------chhhhHHHHHHhc-------cchhhhhhhhccch
Confidence 12334556666764 33 588999999998884 3333566666676 322 2
Q ss_pred --HHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHH
Q 000681 609 --LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 686 (1354)
Q Consensus 609 --~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~ 686 (1354)
.+|..++-+|+.+-.. .....+..++.|....||.+++.+|+.+.+..
T Consensus 162 ~~~~r~~a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------------- 211 (335)
T COG1413 162 LLDVRAAAAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN------------------- 211 (335)
T ss_pred HHHHHHHHHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------------------
Confidence 4777777777766533 23346888999999999999999999887210
Q ss_pred HHHHHHHHHHHhhhccCCChhhhHHHHHHHHHH
Q 000681 687 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 719 (1354)
Q Consensus 687 ~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~ 719 (1354)
..+...+.....|.+..||...+..++..
T Consensus 212 ----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 212 ----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred ----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 23345567778899999999999888765
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.45 E-value=20 Score=43.57 Aligned_cols=189 Identities=17% Similarity=0.181 Sum_probs=83.6
Q ss_pred eEEEeeCC-CcEEEEeCCCC---------------------CCeEEEEEcCCCCEEEEEE------CCCcEEEEECCCCc
Q 000681 1023 DLAVSKLN-NPIACWDTRFE---------------------KGTKTALLQPFSPIVVAAD------ENERIKIWNYEEDT 1074 (1354)
Q Consensus 1023 ~L~~s~~d-~~I~iWd~~~~---------------------~~I~sL~fspdg~~Latgs------~Dg~I~IWd~~tg~ 1074 (1354)
.|++.++. +.|.+.|..+. .....+..-|+|++++++- ..|.+.+.|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 45555544 48888998854 3455666678998888752 34568889988888
Q ss_pred eEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeC--------------------CCeEEEEEccCCCCcceEEeeeeccc
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--------------------NGNIRIWKDYDQKDKQKLVTAFSSIQ 1134 (1354)
Q Consensus 1075 ~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~--------------------DG~IrIWdl~~~~~~~~lvs~~~~l~ 1134 (1354)
....+........--.+.-| .+..+.++|..- -.++.+||+.+. +++ +++.
T Consensus 169 v~g~We~~~~~~~~gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----~~~---Q~id 239 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR----KLL---QTID 239 (461)
T ss_dssp EEEE--SB-TT------EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT----EEE---EEEE
T ss_pred ccceeccCCCCCCCCCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC----cEe---eEEe
Confidence 88887764421122334444 677788887632 257999999662 222 1111
Q ss_pred CCCCCcccceeEEEEecCCCeEEEEE-CCCeEEEE-ECCCCc---eeeeeecCCC----------------CCCeEEEEE
Q 000681 1135 GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLW-DLEKEQ---QMVNPIPSSS----------------DCSISALTA 1193 (1354)
Q Consensus 1135 ~h~~~V~si~~~v~~sp~~~~Lla~g-~Dg~I~VW-Dl~t~~---~~v~~i~~~~----------------~~~Vtsl~~ 1193 (1354)
--.....-+.+-..++|+..+=++++ -.++|..| ..+.++ +.+.+++... ..-|+.| .
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI-~ 318 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI-L 318 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E-E
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE-E
Confidence 11111111111233455566655553 33444444 323332 1233333210 1237888 6
Q ss_pred EcCCCCEEEEEE-CCCeEEEEECCCCCee
Q 000681 1194 SQVHGGQLAAGF-VDGSVRLYDVRTPDML 1221 (1354)
Q Consensus 1194 ~s~~g~~L~sgs-~DGsVrIwDlr~~~~~ 1221 (1354)
.+.+.++|...+ .+|.||.||+......
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 778888876655 6999999999876543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.43 Score=46.22 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHh
Q 000681 561 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 631 (1354)
Q Consensus 561 ~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~ 631 (1354)
.|.-+.=+||.+|-+.+..|....+.+.+..++..-.- | +.+|.+|.|+++|+=.|++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i----D-~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI----D-DHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC----C-cccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566778999999999999998888878877776432 1 779999999999999999999998853
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.15 E-value=51 Score=43.49 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=143.2
Q ss_pred CcEEEEeCCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCC----CEEEEE
Q 000681 1031 NPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV----SLLLVA 1106 (1354)
Q Consensus 1031 ~~I~iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~----~~L~tg 1106 (1354)
+.+..|... ..++..+.+.+...++.++.++.+...+++.+. +.....+. ....|.|+.+.|-+++ .++++|
T Consensus 479 ~~~~~W~~p--~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~-~e~evaCLDisp~~d~~~~s~~~aVG 554 (1096)
T KOG1897|consen 479 GLRSEWRPP--GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKE-FEYEVACLDISPLGDAPNKSRLLAVG 554 (1096)
T ss_pred hhhhcccCC--CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeehe-ecceeEEEecccCCCCCCcceEEEEE
Confidence 344445543 456666666666677777766777767777665 22222222 2257889988543333 378888
Q ss_pred eCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEEC--CCCceeeeeec-CC
Q 000681 1107 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL--EKEQQMVNPIP-SS 1183 (1354)
Q Consensus 1107 s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl--~t~~~~v~~i~-~~ 1183 (1354)
..+..+.+--... ....+. . ..+.+ ..--+++ +..++..+..+|+++..||.+.-|-+ .++. ....+ .+
T Consensus 555 ~Ws~~~~~l~~~p--d~~~~~-~-~~l~~-~~iPRSI-l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~--lsd~Kk~~ 626 (1096)
T KOG1897|consen 555 LWSDISMILTFLP--DLILIT-H-EQLSG-EIIPRSI-LLTTFEGDIHYLLVALGDGALLYFVLDINTGQ--LSDRKKVT 626 (1096)
T ss_pred eecceEEEEEECC--Ccceee-e-eccCC-Cccchhe-eeEEeeccceEEEEEcCCceEEEEEEEcccce--Eccccccc
Confidence 7766655543321 111111 0 00111 1111232 22566666889999999999876654 4443 22221 11
Q ss_pred CCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE-EEEecCCCCCEEEEEECCCcEEEEe
Q 000681 1184 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG-ISFQPGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1184 ~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~s-v~fsp~~~g~~Lasgs~DG~I~IWD 1262 (1354)
-+..-..+..++..++.-+.++.|.-.-+|.-+. +-..... .. ..+.. +.|+.+..+..++++. .+.+++.-
T Consensus 627 lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spl-s~----kev~~~c~f~s~a~~d~l~~~~-~~~l~i~t 699 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPL-SL----KEVNHMCPFNSDAYPDSLASAN-GGALTIGT 699 (1096)
T ss_pred cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEecc-ch----HHhhhhcccccccCCceEEEec-CCceEEEE
Confidence 1222334444555555555555666666666442 2122111 11 11111 1222221244455544 45677766
Q ss_pred CCCCC-ccEEEEecCCCCeEEEEEcCCCCEEEEEeC-----------CC---cEEEEeCCCceEEEEeccCCccccccCC
Q 000681 1263 IRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSA-----------KQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIG 1327 (1354)
Q Consensus 1263 l~~~~-~~v~~l~~h~~~VtsLafspdg~~Lasgs~-----------Dg---~I~Iwd~~g~~l~~i~~~h~~fl~~~~~ 1327 (1354)
++.-. -.++++.- ......+++++....+++.+. .. .++++| .+....+.. |+.-......
T Consensus 700 id~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD--~nTf~vl~~-hef~~~E~~~ 775 (1096)
T KOG1897|consen 700 IDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD--QNTFEVLSS-HEFERNETAL 775 (1096)
T ss_pred ecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec--CCceeEEee-ccccccceee
Confidence 65321 23444433 345677777775444444332 11 234444 333444443 4421112334
Q ss_pred CeEEEEEecC-CCEEEEEEC
Q 000681 1328 SVNCLTFHPY-QVLLAAGSA 1346 (1354)
Q Consensus 1328 ~V~sLafspd-g~~Lasgs~ 1346 (1354)
.|.+..|+.| +.++++|+.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred eeeeeeecCCCceEEEEEEE
Confidence 5666779888 677877753
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=28 Score=39.87 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=133.3
Q ss_pred eEEEeeCCCcEEEEeCCCCCCeEEEEEcCC----------CCEEEEEECCCcEEEEECCCC---ceEEEeeCCCCCCCCe
Q 000681 1023 DLAVSKLNNPIACWDTRFEKGTKTALLQPF----------SPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGI 1089 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~~~I~sL~fspd----------g~~Latgs~Dg~I~IWd~~tg---~~l~~~~~h~~~~~~I 1089 (1354)
....++.+..+++.|..+...++-+.|-+. |++..+++.|..+.+.|+.+. ....++.... ..-
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~---~d~ 174 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG---GDT 174 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC---CCc
Confidence 345566677889999988766555555443 566666776666777777643 2223333222 334
Q ss_pred EEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEE
Q 000681 1090 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1090 tsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWD 1169 (1354)
..++. .|++-+.+..|+-+.|-|+... ....++.... ....+.+ +..+ +++.+..-.+--+.+-|
T Consensus 175 ~~v~I----SGn~AYvA~~d~GL~ivDVSnp-~sPvli~~~n----~g~g~~s----v~vs--dnr~y~vvy~egvlivd 239 (370)
T COG5276 175 HDVAI----SGNYAYVAWRDGGLTIVDVSNP-HSPVLIGSYN----TGPGTYS----VSVS--DNRAYLVVYDEGVLIVD 239 (370)
T ss_pred eeEEE----ecCeEEEEEeCCCeEEEEccCC-CCCeEEEEEe----cCCceEE----EEec--CCeeEEEEcccceEEEe
Confidence 55665 5788888889999999999662 3333332111 1123333 3333 33333333333366777
Q ss_pred CCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1170 l~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~L 1249 (1354)
..+.+ ....+-......+.+++.+.-.+++......+.-+.+-|+.++......- ...-....-..+... +.++
T Consensus 240 ~s~~s-sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~s-s~~t~g~~a~gi~ay----~~y~ 313 (370)
T COG5276 240 VSGPS-SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSS-SLDTAGYQAAGIRAY----GNYN 313 (370)
T ss_pred cCCCC-CceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhc-cccCCCccccceEEe----cCee
Confidence 77665 33333222222234443344457777777777778888887665322111 000000122233332 3444
Q ss_pred EEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1250 asgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
..+..+ ...+-|....+ -.....+....+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 314 yiadkn-~g~vV~~s~~s-~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 314 YIADKN-TGAVVDASPPS-MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred EeccCC-ceEEEeCCChh-hcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 444433 33444443321 11111111222334444445557777778888888874
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.7 Score=54.93 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=126.0
Q ss_pred HHHHhhch--hhhhHHHHHHHHHhcCCHH-HHHH-HH--hcCChhHHHHhhcc-------CchhhhhHHHHHHHHHhhcC
Q 000681 466 VLQVLLSQ--CHRFRALVLLGRFLDMGPW-AVDL-AL--SVGIFPYVLKLLQT-------TTPELRQILVFIWTKILALD 532 (1354)
Q Consensus 466 vLq~LlS~--~~rlral~ll~~fld~g~w-Av~l-al--~~gifpyvlklL~s-------~~~elr~~~~FIwa~i~~~~ 532 (1354)
-+++|.+. .+|+-+|.++.|+++-++- +... .+ ++| |.+.-+||.+ ++.+.+.+.+=|++.+|+..
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 45666664 6899999999999998872 2211 12 244 7888899987 56788889999999999943
Q ss_pred hhhh-hhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHH
Q 000681 533 KSCQ-VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 611 (1354)
Q Consensus 533 ~~~Q-~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR 611 (1354)
.-.. .+.+ +-+..++.++...+. .+.-.-|.-||..+. .++.|+.+.++.+.+..+++.+. . .+...
T Consensus 89 ~~a~~~~~~--~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~-------~-~~~~~ 156 (543)
T PF05536_consen 89 ELASSPQMV--SRIPLLLEILSSSSD-LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP-------N-QSFQM 156 (543)
T ss_pred hhhcCHHHH--HHHHHHHHHHHcCCc-hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH-------h-CcchH
Confidence 2211 1121 345677787765443 467778888999998 99999999999999999999987 3 44444
Q ss_pred HHHHHHHHHhhccchHHhHhhcc---cCchhhHhhhhcCCChHHHHHHHHHHhhccccC
Q 000681 612 QWLCLCLGKLWEDFTEAQTIGRR---ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1354)
Q Consensus 612 ~w~~l~Lg~l~~~~~~~~~~~~~---~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1354)
--++-.|..++......-|.... ..+-..+........-+-+-+++-.|+.|+...
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 45555555555443321111111 122234555555556667778888888888554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.72 E-value=20 Score=41.22 Aligned_cols=169 Identities=9% Similarity=0.142 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCC
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~ 1121 (1354)
..+.++.|+|+.+.|.+..+...-.||=..+|+.+.++.-... ..--.+.|+ .++.+.++--.++.+.++.+....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYI--GGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--CChhHeEEe--cCCEEEEEehhcceEEEEEEcCCc
Confidence 3489999999999888888888888887778999988753221 234467774 567777777778888888875521
Q ss_pred CcceEEe---eeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCce-e-eeeecCCC------CCCeEE
Q 000681 1122 DKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-M-VNPIPSSS------DCSISA 1190 (1354)
Q Consensus 1122 ~~~~lvs---~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~-~-v~~i~~~~------~~~Vts 1190 (1354)
....... +.........+..+ ++|++.++.++++-.-+-+.||.+..... . +.....+. -..|.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEG----lA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEG----LAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCCCcCcee----eecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 1111111 11111111233344 89999999999997776677776553320 0 11111111 012666
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTP 1218 (1354)
Q Consensus 1191 l~~~s~~g~~L~sgs~DGsVrIwDlr~~ 1218 (1354)
+.+....+..++-+..++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 7566667888888889998888887654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=18 Score=41.11 Aligned_cols=252 Identities=14% Similarity=0.121 Sum_probs=129.6
Q ss_pred ceEEEeeCCCcEEEEeCCCCCCeEEEEEcCCCC-EEEEEECCCc-EEEEECCCCceEEEe--------eCCCCCCCCeEE
Q 000681 1022 FDLAVSKLNNPIACWDTRFEKGTKTALLQPFSP-IVVAADENER-IKIWNYEEDTLLNSF--------DNHDFPDKGISK 1091 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~~~I~sL~fspdg~-~Latgs~Dg~-I~IWd~~tg~~l~~~--------~~h~~~~~~Its 1091 (1354)
+..++..+++.+ +.-......-..|.|||.-+ -++.+-.-|+ ..++|..+.+...++ .+|.
T Consensus 49 ~g~a~~~eaGk~-v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG-------- 119 (366)
T COG3490 49 FGAATLSEAGKI-VFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG-------- 119 (366)
T ss_pred eeEEEEccCCce-eeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc--------
Confidence 445555555543 23333345667889999766 4556655555 567888877655443 3444
Q ss_pred EEEEeeCCCCEEEEEeCC-----CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC-----
Q 000681 1092 LCLVNELDVSLLLVASCN-----GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE----- 1161 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~D-----G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~----- 1161 (1354)
.| ++||.+|+..-.| |.|-|||... + .+-+ ..+..|.-.-.. +.|.+++..++++..
T Consensus 120 -vf--s~dG~~LYATEndfd~~rGViGvYd~r~--~-fqrv---gE~~t~GiGpHe----v~lm~DGrtlvvanGGIeth 186 (366)
T COG3490 120 -VF--SPDGRLLYATENDFDPNRGVIGVYDARE--G-FQRV---GEFSTHGIGPHE----VTLMADGRTLVVANGGIETH 186 (366)
T ss_pred -cc--CCCCcEEEeecCCCCCCCceEEEEeccc--c-ccee---cccccCCcCcce----eEEecCCcEEEEeCCceecc
Confidence 56 7899999987554 8899999864 1 1112 234555544455 788889998887632
Q ss_pred --CC-----------eEEEEECCCCceeeee--ec--CCCCCCeEEEEEEcCCCCEEEEEECCCe-----EEEEECCCCC
Q 000681 1162 --VS-----------SIMLWDLEKEQQMVNP--IP--SSSDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRTPD 1219 (1354)
Q Consensus 1162 --Dg-----------~I~VWDl~t~~~~v~~--i~--~~~~~~Vtsl~~~s~~g~~L~sgs~DGs-----VrIwDlr~~~ 1219 (1354)
-| ++.+.|..++. .+.. ++ .+.-+ |..+ ....+|..++.+-.-|. -.+=-.+.++
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~-liekh~Lp~~l~~lS-iRHl-d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGN-LIEKHTLPASLRQLS-IRHL-DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred cccCccccchhhcCccEEEEeccccc-hhhhccCchhhhhcc-eeee-eeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 11 23344444443 2222 22 12222 5555 33444443332222111 0000001111
Q ss_pred eeeEeecCC----CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000681 1220 MLVCSTRPH----TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1220 ~~~~~~~~~----~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasg 1295 (1354)
....+... ..-...|-+|+.+.. .+-..+|.-..+...+||..++ ..+..-.- .....++- .+.-++..
T Consensus 264 -~l~~~~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG-~vv~~a~l--~daaGva~--~~~gf~vs 336 (366)
T COG3490 264 -PLEFLDLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATG-AVVSEAAL--PDAAGVAA--AKGGFAVS 336 (366)
T ss_pred -cCcccCCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCC-cEEecccc--ccccccee--ccCceEEe
Confidence 11111000 011245778888876 3444444445556789999998 34332211 11222332 33335556
Q ss_pred eCCCcEEEEe
Q 000681 1296 SAKQLIKVFS 1305 (1354)
Q Consensus 1296 s~Dg~I~Iwd 1305 (1354)
+.+|.+.++.
T Consensus 337 sg~G~~~~~s 346 (366)
T COG3490 337 SGQGRIIFYS 346 (366)
T ss_pred cCCceEEecc
Confidence 6678888774
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.64 E-value=29 Score=41.80 Aligned_cols=212 Identities=17% Similarity=0.206 Sum_probs=111.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEE--eeCCCCE--EEEEeC-C---CeEEEEEccCCCC
Q 000681 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV--NELDVSL--LLVASC-N---GNIRIWKDYDQKD 1122 (1354)
Q Consensus 1051 pdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~--~s~d~~~--L~tgs~-D---G~IrIWdl~~~~~ 1122 (1354)
|...+++....++-+.+||++ |+.+..+... +++.+... ..-++.. |++++. + ..|++|.+....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 455688888889999999998 7777777533 34433331 1123432 444442 2 4699999864223
Q ss_pred cceEEeee-ecccCCCCCcccceeEEEEecCCC--eEEEEECCCeEEEEECC---CCc---eeeeeecCCCCCCeEEEEE
Q 000681 1123 KQKLVTAF-SSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLE---KEQ---QMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1123 ~~~lvs~~-~~l~~h~~~V~si~~~v~~sp~~~--~Lla~g~Dg~I~VWDl~---t~~---~~v~~i~~~~~~~Vtsl~~ 1193 (1354)
....+... ..+......++. +|+--++..+ +.++.+.+|.+..|-+. .+. ..++.+...+ .+..+ .
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yG--lcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGC-V 214 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYG--LCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGC-V 214 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEE--EEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEE-E
T ss_pred cceEcCCCCccccccccccee--eEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEE-E
Confidence 22222100 000011112333 3333344433 45556789988888764 221 2567776643 47777 4
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCC----eeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcEEEEeCCCCC
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDIQFLDIRNHK 1267 (1354)
Q Consensus 1194 ~s~~g~~L~sgs~DGsVrIwDlr~~~----~~~~~~~~~~~h~~~I~sv~fsp~--~~g~~Lasgs~DG~I~IWDl~~~~ 1267 (1354)
.......|..|-.+.-|.-|+..... ..+... ...+....|-.+++-.. ..|.+|+|.-.+++..+||.+...
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 45566788889999989999887332 112111 11223467888887543 123344444467889999987643
Q ss_pred ccEEEEe
Q 000681 1268 DAYLTID 1274 (1354)
Q Consensus 1268 ~~v~~l~ 1274 (1354)
..+..|.
T Consensus 294 ~~~g~f~ 300 (381)
T PF02333_consen 294 AYVGSFR 300 (381)
T ss_dssp -EEEEEE
T ss_pred cccceEE
Confidence 3444443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.57 E-value=29 Score=39.57 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=106.0
Q ss_pred EEEecCCCeEEEEECCC--eEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000681 1147 VDWQQQSGYLYASGEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1224 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~Dg--~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~ 1224 (1354)
+.|..++..+-++|.-| .|+.+|+.+++ ......-...----.++.. +++.....-.+|...+||..+-+ ....
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-KIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE-EEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce-EEEE
Confidence 56654555556666544 79999999998 6655544333223344333 45566666678999999999876 3444
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 000681 1225 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGSAKQ 1299 (1354)
Q Consensus 1225 ~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~-----~~VtsLafspdg~~Lasgs~Dg 1299 (1354)
+ ... +.=..++ .+ +..|+.......++++|..+. +....+.... ..++.+.+. +|.+.|=.=...
T Consensus 126 ~-~y~---~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 F-PYP---GEGWGLT--SD--GKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp E-E-S---SS--EEE--EC--SSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred E-ecC---CcceEEE--cC--CCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 4 222 2333444 33 566776666778999998877 4555555332 246667776 566666555556
Q ss_pred cEEEEe-CCCceEEEEeccCCcccc---------ccCCCeEEEEEecCCCEEEEEEC
Q 000681 1300 LIKVFS-LEGEQLGTIRYHHPSFMA---------QKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1300 ~I~Iwd-~~g~~l~~i~~~h~~fl~---------~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
.|...| .+|+....+.. . +... ......+.+||+|....|...|.
T Consensus 196 ~I~~Idp~tG~V~~~iDl-s-~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDL-S-GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE--H-HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEh-h-HhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 677777 56776666532 1 1100 11357899999998866655553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=91.54 E-value=3.6 Score=53.24 Aligned_cols=179 Identities=21% Similarity=0.192 Sum_probs=117.8
Q ss_pred hhchhhhhHHHH-HHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhhhhhcccChhhh
Q 000681 470 LLSQCHRFRALV-LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1354)
Q Consensus 470 LlS~~~rlral~-ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~~~~~f 548 (1354)
+..|.+=+|+.. +|.++- -.+....-.+..||+++.+++|++...|+.-.++=.+ +=+++++.++....+.+.....
T Consensus 259 ~~kQeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 259 IRKQEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHH
Confidence 445666666554 544444 3345555557899999999999988877755333333 3466777888889999999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH
Q 000681 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1354)
Q Consensus 549 ~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~ 628 (1354)
.++|...+. +.+..+.=+|--+.. .+..+..-++.|++..+..+|. + +..|..++-.|.++-.+ +++
T Consensus 337 ~kLl~s~~~--~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~-------d--~~~~~val~iLy~LS~d-d~~ 403 (708)
T PF05804_consen 337 LKLLPSENE--DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLK-------D--PNFREVALKILYNLSMD-DEA 403 (708)
T ss_pred HHHhcCCCH--HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhC-------C--CchHHHHHHHHHHhccC-Hhh
Confidence 999987653 566665555555533 3444666789999999999998 3 34565555556666554 455
Q ss_pred hHhh-cccCchhhHhhh-hcCCChHHHHHHHHHHhhcc
Q 000681 629 QTIG-RRADAPAIYVPL-LSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 629 ~~~~-~~~~~~~~l~~l-l~D~sP~VRaa~v~aL~~~i 664 (1354)
|.+. ..+.++ .+..+ +.-+.++|..+++-++-.+.
T Consensus 404 r~~f~~TdcIp-~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 404 RSMFAYTDCIP-QLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHhhcchHH-HHHHHHHhCCCccccHHHHHHHHHHh
Confidence 5544 444444 55554 45567778777655555554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=8.4 Score=48.91 Aligned_cols=147 Identities=12% Similarity=0.054 Sum_probs=69.4
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC--C----CeEEE
Q 000681 1099 DVSLLLVASCN-----GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--V----SSIML 1167 (1354)
Q Consensus 1099 d~~~L~tgs~D-----G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~--D----g~I~V 1167 (1354)
++.+.+.||.+ ..+..||..+ +.... ......+....+ ++. -++...+.||. + +.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~--~~W~~------~~~lp~~r~~~~--~~~-~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGE--SKWRE------EPPLIFPRYNPC--VVN-VNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCC--Cceee------CCCcCcCCccce--EEE-ECCEEEEECCcCCCCcccceEEE
Confidence 67777777765 3466677654 22222 221111111111 111 13445555552 1 45889
Q ss_pred EECCCCce-eeeeecCCCCCCeEEEEEEcCCCCEEEEEECCC--------eEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000681 1168 WDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG--------SVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1238 (1354)
Q Consensus 1168 WDl~t~~~-~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DG--------sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv 1238 (1354)
||..+.+- .+..++..... .++.. .++.+++.|+.++ .+.+||..+++ -.. .............+
T Consensus 411 yd~~t~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~-~~~~~~~r~~~~~~ 484 (534)
T PHA03098 411 FSLNTNKWSKGSPLPISHYG--GCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTE-LSSLNFPRINASLC 484 (534)
T ss_pred EeCCCCeeeecCCCCccccC--ceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCc-eee-CCCCCcccccceEE
Confidence 99887650 11112211111 12212 2566777776432 38899988765 211 11111011111122
Q ss_pred EEecCCCCCEEEEEECC-----CcEEEEeCCCC
Q 000681 1239 SFQPGLDPAKIVSASQA-----GDIQFLDIRNH 1266 (1354)
Q Consensus 1239 ~fsp~~~g~~Lasgs~D-----G~I~IWDl~~~ 1266 (1354)
.+ + +..++.|+.+ ..|.+||..+.
T Consensus 485 ~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 485 IF--N--NKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EE--C--CEEEEEcCCcCCcccceeEEEeCCCC
Confidence 22 4 6777777754 46788887765
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=91.34 E-value=2.5 Score=51.50 Aligned_cols=171 Identities=15% Similarity=0.292 Sum_probs=106.6
Q ss_pred hcCCHHHHHHHHhcCChhHHHHhhccCchh-hhhHHHHHHHHHhhcC------hhhhhhhhcccChhhhhhhcCCCC-Cc
Q 000681 487 LDMGPWAVDLALSVGIFPYVLKLLQTTTPE-LRQILVFIWTKILALD------KSCQVDLVKDGGHAYFIRFLDSME-AY 558 (1354)
Q Consensus 487 ld~g~wAv~lal~~gifpyvlklL~s~~~e-lr~~~~FIwa~i~~~~------~~~Q~~l~k~~~~~~f~~~L~~~~-~~ 558 (1354)
|...+-++......+++|-++.+++....| .=.+++.|+--++... ..+...++..++.+ .+..|.... ..
T Consensus 214 LSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~D 292 (429)
T cd00256 214 LTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDD 292 (429)
T ss_pred HhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCc
Confidence 334444555556678899999999866543 3346677776666532 12223334333333 333333110 01
Q ss_pred hHHHHHHHHHHHHHhcCC---------------------cchh-HHHH----------hhcHHHHHHHhhcCCCCCCCCC
Q 000681 559 PEQRAMAAFVLAVIVDGH---------------------RRGQ-EACI----------EAGLIHVCLKHLQGSMPNDAQT 606 (1354)
Q Consensus 559 ~~~r~~~af~La~l~~~~---------------------~~gq-~~~~----------~~~~~~~~~~~L~~~~~~~~~~ 606 (1354)
+++.....++-..+=+.+ |..+ ..-+ +-.++.++..+|.. +.
T Consensus 293 edL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~ 366 (429)
T cd00256 293 EDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SV 366 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CC
Confidence 233333332222221111 1110 1111 23456777888853 45
Q ss_pred CHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 607 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 607 ~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+|.+-+-+|.=+|.|...++++|.+.-+.++-+.+..+++++.|+||.+|+.|++.++
T Consensus 367 d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999888889999999999999999999999999886
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.62 Score=59.39 Aligned_cols=141 Identities=18% Similarity=0.275 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCch
Q 000681 559 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 638 (1354)
Q Consensus 559 ~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 638 (1354)
+..|+-+.+-||.+|--+.. +-..++..+...|+- ....-+|-=.++++|-++..|.. .++..++
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~------~~~~aiRnNiV~am~D~C~~YTa----m~d~YiP 1009 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEY------NTAHAIRNNIVLAMGDICSSYTA----MTDRYIP 1009 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHh------hhHHHHhcceeeeehhhHHHHHH----HHHHhhH
Confidence 78899888999998843332 334456677777764 44677999999999999987754 2344455
Q ss_pred hhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHH
Q 000681 639 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 718 (1354)
Q Consensus 639 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~ 718 (1354)
++...|.|++|.||+-+++.|+++++... +.---.+....+-.+-|.++.+|.-+-..++.
T Consensus 1010 -~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~------------------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1010 -MIAASLCDPSVIVRRQTIILLARLLQFGI------------------VKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred -HHHHHhcCchHHHHHHHHHHHHHHHhhhh------------------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 88899999999999999999999995431 11112223333444559999999999999988
Q ss_pred HHHh-----hhhhHHHHHHh
Q 000681 719 FAFG-----HKQHLKSIAAA 733 (1354)
Q Consensus 719 ~v~~-----~~~~f~~~a~~ 733 (1354)
++.. +-.+|+..-+.
T Consensus 1071 vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1071 VLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred HHhhcCccchHHHHHHHHHH
Confidence 8766 34456654443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.5 Score=39.11 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceE
Q 000681 1277 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1311 (1354)
Q Consensus 1277 ~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l 1311 (1354)
...|.+++|+|...+||.|+.||.|.+|.++++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 35699999999999999999999999999887654
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.09 E-value=3.5 Score=51.69 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHhcCCH-HHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhhh-hhhcccChhhhhhhcC
Q 000681 476 RFRALVLLGRFLDMGP-WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV-DLVKDGGHAYFIRFLD 553 (1354)
Q Consensus 476 rlral~ll~~fld~g~-wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q~-~l~k~~~~~~f~~~L~ 553 (1354)
--|-+.++++|+.-=| .-.-.=+=.|+|.|++|-+.++..-.|-=+.-|+|+++.. .+|. |-+-+++..-....|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~--~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE--NAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc--ccccCHHHHHHHHHHHHHHHh
Confidence 3467778888874322 0000002348899999999988777777778899999872 2331 1111233333344444
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH-------hhccch
Q 000681 554 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGK-------LWEDFT 626 (1354)
Q Consensus 554 ~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~-------l~~~~~ 626 (1354)
+.+ |-.|--+.++|+.+= +.+..- +..+.+.+..++++ ||+||||.++++++.- ..+.-.
T Consensus 137 Dre--p~VRiqAv~aLsrlQ-~d~~de----e~~v~n~l~~liqn------DpS~EVRRaaLsnI~vdnsTlp~IveRar 203 (892)
T KOG2025|consen 137 DRE--PNVRIQAVLALSRLQ-GDPKDE----ECPVVNLLKDLIQN------DPSDEVRRAALSNISVDNSTLPCIVERAR 203 (892)
T ss_pred ccC--chHHHHHHHHHHHHh-cCCCCC----cccHHHHHHHHHhc------CCcHHHHHHHHHhhccCcccchhHHHHhh
Confidence 544 578889999999994 222111 44677888888886 9999999999998753 222111
Q ss_pred HH----hHhhcccCc-------------hhhHhhhhcCCChHHHHHHHHHHhh
Q 000681 627 EA----QTIGRRADA-------------PAIYVPLLSEPQPEVRASAVFSLGT 662 (1354)
Q Consensus 627 ~~----~~~~~~~~~-------------~~~l~~ll~D~sP~VRaa~v~aL~~ 662 (1354)
+. +.+.+...+ ...|-.-|+|..--||.|++=+|..
T Consensus 204 DV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 204 DVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 11 111111111 1134456789999999999877765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.02 E-value=16 Score=46.63 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=118.1
Q ss_pred CcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCccc
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1142 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1142 (1354)
-.|+||++. |+.+.+..-.. +.+..+.| .+...|++...+|+++||++... ..+.. . .........|..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~---~~lI~mgW---s~~eeLI~v~k~g~v~Vy~~~ge--~ie~~-s-vg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH---GELIGMGW---SDDEELICVQKDGTVHVYGLLGE--FIESN-S-VGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC---CCeeeecc---cCCceEEEEeccceEEEeecchh--hhccc-c-cccccccCceeE
Confidence 458888875 77666655444 47888999 46677777889999999998541 11100 0 000111122222
Q ss_pred ceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC---CCCCCeEEEEEEcCCCC--EEEEEE-CCCeEEEEECC
Q 000681 1143 SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---SSDCSISALTASQVHGG--QLAAGF-VDGSVRLYDVR 1216 (1354)
Q Consensus 1143 i~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~---~~~~~Vtsl~~~s~~g~--~L~sgs-~DGsVrIwDlr 1216 (1354)
+-.|+ +|..+...++..+.+-+.+... .+.++. .... -+|-+.+.++.. .++-.. ..| ..++-..
T Consensus 133 ---c~~f~--~GVavlt~~g~v~~i~~~~~~~--~~~~~diP~~~~~-~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~ 203 (829)
T KOG2280|consen 133 ---CRFFH--NGVAVLTVSGQVILINGVEEPK--LRKMPDIPYNELP-KSCWTVFQPHRQSTILLDVDVAVG-LHICQVE 203 (829)
T ss_pred ---EEEec--CceEEEecCCcEEEEcCCCcch--hhhCCCCCCccCC-CcceeEecCCCcceeEEeechhhh-hccccee
Confidence 23343 4444444444444554544433 333332 1111 133333333222 111111 111 0111111
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEecCC-CCeEEEEEcCCCCEEEEE
Q 000681 1217 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASG 1295 (1354)
Q Consensus 1217 ~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~-~~VtsLafspdg~~Lasg 1295 (1354)
........ ...-.+.+..+.++|+ ..+|+-=..+|.|.+-+.... +.+..+.... .+-..++|.-+...+ .
T Consensus 204 ~~~~q~~~---~~~~~~~~~ki~VS~n--~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p~qm~WcgndaVv--l 275 (829)
T KOG2280|consen 204 ESRVQLHA---LSWPNSSVVKISVSPN--RRFLALYTETGKIWVVSIDLS-QILCEFNCTDHDPPKQMAWCGNDAVV--L 275 (829)
T ss_pred cccccccc---cCCCCceEEEEEEcCC--cceEEEEecCCcEEEEecchh-hhhhccCCCCCCchHhceeecCCceE--E
Confidence 11111111 1111256888999998 999999999999999988765 4555555211 122245555433211 1
Q ss_pred eCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000681 1296 SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1296 s~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
+.+..+.+..-.|..+.-+-. +. +. +.--+||-.+++.+
T Consensus 276 ~~e~~l~lvgp~gd~V~f~yd-~t---------~~-l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 276 SWEVNLMLVGPPGDSVQFYYD-ET---------AI-LSAEVDGVRIITST 314 (829)
T ss_pred EEeeeEEEEcCCCCccccccC-CC---------ce-eeeccCeeEEeccc
Confidence 223334444444544443332 22 22 55556776666543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=70 Score=42.08 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCEEEEEEC-----CCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCC------CeE
Q 000681 1044 TKTALLQPFSPIVVAADE-----NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNI 1112 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs~-----Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~D------G~I 1112 (1354)
+..+.++|++++|+.+.+ ...|++.|+.+|+.+...-... . ..++| .+|++.|+....+ ..|
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~-~~~~w--~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----E-PSFVW--ANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----c-eEEEE--eeCCCEEEEEEecCCCCCCCEE
Confidence 667889999998887642 2358888988775432211111 2 45788 5577655554332 256
Q ss_pred EEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE---CCCeEEEEECCC--CceeeeeecCCCCCC
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEK--EQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g---~Dg~I~VWDl~t--~~~~v~~i~~~~~~~ 1187 (1354)
..+++.+......++ +.+...... +....+.++..++..+ .++.+.+++... +. ....+....+.
T Consensus 202 ~~h~lgt~~~~d~lv-----~~e~~~~~~---~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~- 271 (686)
T PRK10115 202 WRHTIGTPASQDELV-----YEEKDDTFY---VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRKDH- 271 (686)
T ss_pred EEEECCCChhHCeEE-----EeeCCCCEE---EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCCCC-
Confidence 677776632233333 222222221 1122233677666553 456799999532 32 22222222222
Q ss_pred eEEEEEEcCCCCEEEEEECC----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000681 1188 ISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs~D----GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl 1263 (1354)
...+ ... +..+..-+.. ..|...++.........+ ... ....|..+.+. . ..++++...+|.-+++-+
T Consensus 272 ~~~~--~~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~-~~~~i~~~~~~-~--~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 272 EYSL--DHY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPR-ENIMLEGFTLF-T--DWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEE--EeC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEE-CCC-CCCEEEEEEEE-C--CEEEEEEEeCCEEEEEEE
Confidence 3343 122 2333333322 234444544222122222 221 12467788886 3 466777777777555544
Q ss_pred CCCCccEEEEe-cCCCCeEEEEEc--CCCC-EEEEEeC---CCcEEEEeCCCceEEEEe
Q 000681 1264 RNHKDAYLTID-AHRGSLSALAVH--RHAP-IIASGSA---KQLIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1264 ~~~~~~v~~l~-~h~~~VtsLafs--pdg~-~Lasgs~---Dg~I~Iwd~~g~~l~~i~ 1315 (1354)
......+..+. .....+..+.++ +++. ++++.++ -+.+..+|..+.....++
T Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 344 NRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred cCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 32112344433 222233334444 3333 4444432 467788886544444443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.42 E-value=12 Score=42.42 Aligned_cols=162 Identities=15% Similarity=0.160 Sum_probs=87.0
Q ss_pred EEEecCCCeEEEEECC-----CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECC-------C------
Q 000681 1147 VDWQQQSGYLYASGEV-----SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-------G------ 1208 (1354)
Q Consensus 1147 v~~sp~~~~Lla~g~D-----g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D-------G------ 1208 (1354)
-.|++++.+|+++-+| |.|-|||.+.+-+.+-++..+.-. -..+ .+..||+.++.+... |
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG-pHev-~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG-PHEV-TLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC-ccee-EEecCCcEEEEeCCceecccccCccccch
Confidence 3578999999998433 789999998665467777776544 4555 455789888776421 1
Q ss_pred -----eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE-----EEEeCCCCCccEEEEec---
Q 000681 1209 -----SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI-----QFLDIRNHKDAYLTIDA--- 1275 (1354)
Q Consensus 1209 -----sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I-----~IWDl~~~~~~v~~l~~--- 1275 (1354)
++.+.|..+++.+.+..-....+.-.|..++..++ |..++.+-..|.- -+=-.+.+ +++.-+..
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g-~~l~~~~~pee 273 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKG-EPLEFLDLPEE 273 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCC-CcCcccCCCHH
Confidence 22233333333111111011123456777777776 6555444332210 00001111 23332221
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeC-CCceEEE
Q 000681 1276 ----HRGSLSALAVHRHAPIIASGSA-KQLIKVFSL-EGEQLGT 1313 (1354)
Q Consensus 1276 ----h~~~VtsLafspdg~~Lasgs~-Dg~I~Iwd~-~g~~l~~ 1313 (1354)
....|-+++.+.+..+++..+- .+..-+||. +|..+..
T Consensus 274 ~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 274 QTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 1235778888876666655554 455678994 5555443
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.7 Score=53.10 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=78.8
Q ss_pred hhcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCH
Q 000681 529 LALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEP 608 (1354)
Q Consensus 529 ~~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P 608 (1354)
+-.||.| .+++. +-+.|.++.+..++. -.|--|+=+||.+.+..++--.. +-.++.+++.+.+- |-.|
T Consensus 79 ~~~dpeg-~~~V~-~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~-------DRE~ 146 (885)
T COG5218 79 MPDDPEG-EELVA-GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLF-------DREK 146 (885)
T ss_pred CCCChhh-hHHHH-HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHh-------cchH
Confidence 3456666 45553 445566666667665 67888889999999888774433 44556677777777 7789
Q ss_pred HHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhh-cCCChHHHHHHHHHHh
Q 000681 609 LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 661 (1354)
Q Consensus 609 ~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 661 (1354)
-||.=++.||.++-+.....+ ..+...|..++ +|||.|||.+++.-+.
T Consensus 147 ~VR~eAv~~L~~~Qe~~~nee-----n~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 147 AVRREAVKVLCYYQEMELNEE-----NRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHHhccCChH-----HHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 999999999999975432211 11222344444 8999999998876554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.63 Score=38.51 Aligned_cols=33 Identities=6% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTL 1075 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~ 1075 (1354)
..|++++|+|..++||.|+.+|.|.||.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 67999999999999999999999999998 4544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.1 Score=55.54 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=99.4
Q ss_pred hhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch
Q 000681 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1354)
Q Consensus 547 ~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~ 626 (1354)
-|++-|.+.+ ++.|+-.-.++..|......-- -.++...++++|. .++-..--=+.=||.+.++|..
T Consensus 94 ~~l~~lgd~~--~lIr~tvGivITTI~s~~~~~~----wpelLp~L~~~L~-------s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 94 ECLHGLGDAS--PLIRATVGIVITTIASTGGLQH----WPELLPQLCELLD-------SPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred HHHhhccCch--HHHHhhhhheeeeeeccccccc----chhHHHHHHHHhc-------CCcccccchhHHHHHHHHhhhH
Confidence 3555666655 5899988888888875543322 2677788888887 3332223346678999998865
Q ss_pred HHhHhh-----cccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHH-HHHHHHHHHHHhhh
Q 000681 627 EAQTIG-----RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK-IRAEISIIRSLLTV 700 (1354)
Q Consensus 627 ~~~~~~-----~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ll~~ 700 (1354)
+--... ++..+ -+++...++++|-.|+.++..+.+||-... +.. +++ ......+..+
T Consensus 161 ~~lds~~~~rpl~~mi-pkfl~f~~h~spkiRs~A~~cvNq~i~~~~---------------qal~~~i-D~Fle~lFal 223 (885)
T KOG2023|consen 161 QFLDSDVLTRPLNIMI-PKFLQFFKHPSPKIRSHAVGCVNQFIIIQT---------------QALYVHI-DKFLEILFAL 223 (885)
T ss_pred HHHhhhcccCchHHhH-HHHHHHHhCCChhHHHHHHhhhhheeecCc---------------HHHHHHH-HHHHHHHHHH
Confidence 432221 22222 378888999999999999999999994321 111 122 2345667888
Q ss_pred ccCCChhhhHHHHHHHHHHHHh
Q 000681 701 VSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 701 ~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
.+|..|+||+.+-.++..+...
T Consensus 224 anD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 224 ANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred ccCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999888777643
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.20 E-value=4.5 Score=47.91 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=103.2
Q ss_pred cchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHHHhcCC----hhHHHHhhc-cCchhhhhHHHHHHHHHhhcChhh
Q 000681 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGI----FPYVLKLLQ-TTTPELRQILVFIWTKILALDKSC 535 (1354)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~lal~~gi----fpyvlklL~-s~~~elr~~~~FIwa~i~~~~~~~ 535 (1354)
+.+|-...+|.+..+.+|-.-+ + +|.... .|.++++|+ +...-.|.-+++.+.++-.- .+
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~---~----------aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~a 138 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAA---D----------ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE--RA 138 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH---H----------HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--hh
Confidence 5677777777777776665544 1 333333 467778888 46556677677766555332 22
Q ss_pred hhhhhcccChhhhhhhcCCCC--------Cch--HHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCC
Q 000681 536 QVDLVKDGGHAYFIRFLDSME--------AYP--EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQ 605 (1354)
Q Consensus 536 Q~~l~k~~~~~~f~~~L~~~~--------~~~--~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~ 605 (1354)
.. -.+..|++.. ..+ ..|..++..|+.+- .......+..++. +
T Consensus 139 ~~---------~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~-------~ 191 (335)
T COG1413 139 LD---------PLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLE-------D 191 (335)
T ss_pred hH---------HHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHh-------C
Confidence 21 2233333322 001 45777777776663 4556778888888 7
Q ss_pred CCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 606 TEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 606 ~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+...+|.++..+||++.... ..+...+...+.|++..||.+++.+||..-
T Consensus 192 ~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 192 EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 78899999999999998875 344457899999999999999999999775
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.11 E-value=18 Score=41.36 Aligned_cols=236 Identities=16% Similarity=0.110 Sum_probs=141.0
Q ss_pred CcchhhHHHHhhc---hhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhHHHHhhccCchhhhhHHHHHHHHHhhcChhhh
Q 000681 460 PEQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 536 (1354)
Q Consensus 460 p~~lP~vLq~LlS---~~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~i~~~~~~~Q 536 (1354)
+++|.-++.+|.+ +.-+-+|+..+++. .--|-++...-..|+.+-+.++|.++.++.|.-++-.++- ++.....|
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N-ls~~~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN-LSVNDENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh-cCCChhhH
Confidence 5788888888885 33556788888884 4456888888889999999999999988888665444443 34433333
Q ss_pred hhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000681 537 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 616 (1354)
Q Consensus 537 ~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l 616 (1354)
. -++.-+-..|-..+..+-..+.|.+=.= +|..+.-. ...|.. + .+.+.-++.+|. ..+..+|-=++-
T Consensus 89 ~-~Ik~~i~~Vc~~~~s~~lns~~Q~agLr-lL~nLtv~-~~~~~~-l-~~~i~~ll~LL~-------~G~~~~k~~vLk 156 (254)
T PF04826_consen 89 E-QIKMYIPQVCEETVSSPLNSEVQLAGLR-LLTNLTVT-NDYHHM-L-ANYIPDLLSLLS-------SGSEKTKVQVLK 156 (254)
T ss_pred H-HHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHccCCC-cchhhh-H-HhhHHHHHHHHH-------cCChHHHHHHHH
Confidence 2 2344333444444444333345533111 22222111 222333 2 234556678888 667778877777
Q ss_pred HHHHhhccchHHhHhhcccCchhhHhhhhcCC-ChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChH---HHHHHHHH
Q 000681 617 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD---EKIRAEIS 692 (1354)
Q Consensus 617 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~e~~ 692 (1354)
+|..|=++...++.. +...+...|+.+++.. .-++.-.++..+..+-......... ....++..+ -..+.+..
T Consensus 157 ~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~--~~~~~~~~~~L~~~~~e~~~ 233 (254)
T PF04826_consen 157 VLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV--FVQDDFSEDSLFSLFGESSQ 233 (254)
T ss_pred HHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce--eccccCCchhHHHHHccHHH
Confidence 888777776665544 4445677888888654 6777777777777764221110000 011222221 12223445
Q ss_pred HHHHHhhhccCCChhhhHHH
Q 000681 693 IIRSLLTVVSDGSPLVRAEV 712 (1354)
Q Consensus 693 ~~~~ll~~~~D~sp~VR~e~ 712 (1354)
++..|..+...+.|+||..+
T Consensus 234 ~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHcCCCHHHhhhc
Confidence 78889999999999999865
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.88 E-value=49 Score=39.31 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=45.4
Q ss_pred cEEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCE
Q 000681 1269 AYLTIDAHRGSLSALAVHR-------HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1340 (1354)
Q Consensus 1269 ~v~~l~~h~~~VtsLafsp-------dg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~ 1340 (1354)
++..+..| ..+..+.|.. +|.++++.-..+.|....++ +..+.. +..+.......+..+++.|||.+
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE----EEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE----EEEECTTSSS-EEEEEEETTSEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc----eEEccccCCCCceEEEEcCCCeE
Confidence 45555544 4567777764 34466665555667666654 322221 22233334458999999999999
Q ss_pred EEEEECCCeEE
Q 000681 1341 LAAGSADACVS 1351 (1354)
Q Consensus 1341 Lasgs~Dg~V~ 1351 (1354)
+++...+|.|.
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 99888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=12 Score=48.08 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=82.2
Q ss_pred eEEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC----
Q 000681 1188 ISALTASQVHGGQLAAGF------VDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---- 1255 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs------~DG--sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D---- 1255 (1354)
+.+. ..+++|+.++... .|+ .|.+++.... ..... . + ...+.-.|+|+ |..+++.+..
T Consensus 352 vssp-aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt-~--g--~~~t~PsWspD--G~~lw~v~dg~~~~ 421 (591)
T PRK13616 352 ITSA-ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVL-E--G--HSLTRPSWSLD--ADAVWVVVDGNTVV 421 (591)
T ss_pred cccc-eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeee-c--C--CCCCCceECCC--CCceEEEecCcceE
Confidence 6666 6778998877665 243 4666665222 22211 1 1 23788899998 7776666432
Q ss_pred --------CcEEEEeCCCCCccEEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE---EeC-CCceEEEEeccCCcccc
Q 000681 1256 --------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV---FSL-EGEQLGTIRYHHPSFMA 1323 (1354)
Q Consensus 1256 --------G~I~IWDl~~~~~~v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~I---wd~-~g~~l~~i~~~h~~fl~ 1323 (1354)
+.+.+.+++.+ +... ...+.|..+.|+|||..+|... ++.|.+ -.. .|. ..+..... +.
T Consensus 422 ~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~--l~ 492 (591)
T PRK13616 422 RVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPRE--VG 492 (591)
T ss_pred EEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEE--ee
Confidence 23443444443 2221 2356799999999999887765 467777 332 333 22211000 11
Q ss_pred c-cCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000681 1324 Q-KIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1324 ~-~~~~V~sLafspdg~~Lasgs~Dg~V~IW 1353 (1354)
. -...+.++.|..++.++ ++..++...+|
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~ 522 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVW 522 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceE
Confidence 1 12346889999999855 55554443333
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.82 E-value=56 Score=39.87 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=112.7
Q ss_pred eeCCCCEEEEE-eCCC----eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEEC---------
Q 000681 1096 NELDVSLLLVA-SCNG----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------- 1161 (1354)
Q Consensus 1096 ~s~d~~~L~tg-s~DG----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~--------- 1161 (1354)
.++++++++.+ +..| .|+|+|+.+ ++ .+... +.. +.. ..+.|.+++..++....
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~-~l~d~---i~~----~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLET--GK-FLPDG---IEN----PKF--SSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTT--TE-EEEEE---EEE----EES--EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCC--Cc-CcCCc---ccc----ccc--ceEEEeCCCCEEEEEEeCcccccccC
Confidence 37899988865 3333 499999976 31 11111 111 111 11899999888777642
Q ss_pred --CCeEEEEECCCCcee-eeeecCCCCCC-eEEEEEEcCCCCEEEEEECC----CeEEEEECCCC----CeeeEeecCCC
Q 000681 1162 --VSSIMLWDLEKEQQM-VNPIPSSSDCS-ISALTASQVHGGQLAAGFVD----GSVRLYDVRTP----DMLVCSTRPHT 1229 (1354)
Q Consensus 1162 --Dg~I~VWDl~t~~~~-v~~i~~~~~~~-Vtsl~~~s~~g~~L~sgs~D----GsVrIwDlr~~----~~~~~~~~~~~ 1229 (1354)
...|+.|.+.+.... ...+....... ...+ ..+.++++++..... ..|.+.|...+ ..........
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~- 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-SRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE- 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-EE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-EecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-
Confidence 224888888876511 23444433332 4566 567888887764433 34788888874 1122222222
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEeCCCCCc--cEEEEecCCCCeEEEEEcCCCCEEE-EEeCCC--cE
Q 000681 1230 QQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKD--AYLTIDAHRGSLSALAVHRHAPIIA-SGSAKQ--LI 1301 (1354)
Q Consensus 1230 ~h~~~I~sv~fsp~~~g~~Lasgs~---DG~I~IWDl~~~~~--~v~~l~~h~~~VtsLafspdg~~La-sgs~Dg--~I 1301 (1354)
..+....-+.+ +.+++.... ++.|.-.++..... -...+..|...+.-..+...+.+|+ ....++ .|
T Consensus 277 ---~~~~~~v~~~~--~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 277 ---DGVEYYVDHHG--DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp ---SS-EEEEEEET--TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred ---CceEEEEEccC--CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEE
Confidence 23333222223 444444432 36677788877631 1235555665433333344444444 444443 58
Q ss_pred EEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000681 1302 KVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1302 ~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
++++.. +.....+.. .. .+.|..+...+++.
T Consensus 352 ~v~~~~~~~~~~~~~~-p~------~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL-PE------AGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEETT-TEEEEEEES-SS------SSEEEEEES-TT-S
T ss_pred EEEECCCCcEEeeecC-Cc------ceEEeccCCCCCCC
Confidence 889988 777776665 22 24456665555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.71 E-value=58 Score=39.88 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=48.9
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EECC-----CCceEEEeeC--CCCCCCCeEEEEEEee---------CCCCEEEEE
Q 000681 1046 TALLQPFSPIVVAADENERIKI---WNYE-----EDTLLNSFDN--HDFPDKGISKLCLVNE---------LDVSLLLVA 1106 (1354)
Q Consensus 1046 sL~fspdg~~Latgs~Dg~I~I---Wd~~-----tg~~l~~~~~--h~~~~~~ItsL~f~~s---------~d~~~L~tg 1106 (1354)
.++.+|++++||.|..+..+.+ |+.. .+.....+.+ ...++..|+++.+++= +|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999986665554 5331 1222222322 1222368999988753 467899999
Q ss_pred eCCCeEEEEEc
Q 000681 1107 SCNGNIRIWKD 1117 (1354)
Q Consensus 1107 s~DG~IrIWdl 1117 (1354)
..+|.|++|..
T Consensus 86 ~ssG~vrfyte 96 (415)
T PF14655_consen 86 TSSGYVRFYTE 96 (415)
T ss_pred ecccEEEEEec
Confidence 99999999986
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=26 Score=45.01 Aligned_cols=188 Identities=12% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEe------CCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEE
Q 000681 1087 KGISKLCLVNELDVSLLLVAS------CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs------~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g 1160 (1354)
..+.+.++ +++|+.++... .|+.-.||-....... ..+ ..+. .... -.|+++++.+.+..
T Consensus 350 ~~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~l-----t~g~--~~t~----PsWspDG~~lw~v~ 415 (591)
T PRK13616 350 GNITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQV-----LEGH--SLTR----PSWSLDADAVWVVV 415 (591)
T ss_pred cCcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eee-----ecCC--CCCC----ceECCCCCceEEEe
Confidence 35677788 68888877665 2444445543221122 221 1222 2344 78999988777764
Q ss_pred CC------------CeEEEEECCCCceeeeeecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEE---EECCCCCeeeEee
Q 000681 1161 EV------------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL---YDVRTPDMLVCST 1225 (1354)
Q Consensus 1161 ~D------------g~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrI---wDlr~~~~~~~~~ 1225 (1354)
+. +.+.+.++..+. ... .....|.++ .++++|..++... +|.|.+ -....+...+...
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge-~~~----~~~g~Issl-~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASA-VAS----RVPGPISEL-QLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCch-hhh----ccCCCcCeE-EECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 32 233333443333 111 112349999 7899999888766 577777 3333333111110
Q ss_pred cCC-CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCc
Q 000681 1226 RPH-TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAVHRHAPIIASGSAKQL 1300 (1354)
Q Consensus 1226 ~~~-~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~--h~~~VtsLafspdg~~Lasgs~Dg~ 1300 (1354)
... .+-...+.++.|..+ +. |+++..++...+|.+.-.......+.. ....+..++-++. -++....++.
T Consensus 489 ~~l~~~l~~~~~~l~W~~~--~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTG--DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred EEeecccCCccccceEecC--CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 011 111234688999987 66 456666555555554432212111122 2456666766653 2334445553
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=38 Score=37.64 Aligned_cols=95 Identities=14% Similarity=0.128 Sum_probs=58.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEE--CCCCC-----eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000681 1189 SALTASQVHGG-QLAAGFVDGSVRLYD--VRTPD-----MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260 (1354)
Q Consensus 1189 tsl~~~s~~g~-~L~sgs~DGsVrIwD--lr~~~-----~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~I 1260 (1354)
+.++|. .+.+ +.++-+.+-+|.-|| ..++. .+....+......-.--.+++... |.+.++.-..|+|.-
T Consensus 161 Ngl~Wd-~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAWD-SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQK 237 (310)
T ss_pred cccccc-ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEE
Confidence 445343 4444 445566677887787 43332 111111100000111223344444 888888888999999
Q ss_pred EeCCCCCccEEEEecCCCCeEEEEEcC
Q 000681 1261 LDIRNHKDAYLTIDAHRGSLSALAVHR 1287 (1354)
Q Consensus 1261 WDl~~~~~~v~~l~~h~~~VtsLafsp 1287 (1354)
.|..++ +.+.++.-....|++++|--
T Consensus 238 ~dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCCCC-cEEEEEEcCCCceEEEEecC
Confidence 999999 58888887888999999964
|
|
| >smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues | Back alignment and domain information |
|---|
Probab=89.59 E-value=2.3 Score=48.15 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhccC---CCceEEEEEcCCCCCCCCCCceEEEecCCCCeeeecch
Q 000681 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA---KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPI 226 (1354)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~---~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~ 226 (1354)
.++|.+-++++- -......|.+.+++++.+..+.+.. ..+=++|-|-|||. .|.|+--|.. ++++
T Consensus 32 ~~~l~~~f~~lg--F~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-----~~~l~~~D~~-----~v~l 99 (241)
T smart00115 32 AENLTELFQSLG--YEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-----EGGIYGTDHS-----PLPL 99 (241)
T ss_pred HHHHHHHHHHCC--CEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-----CCeEEEecCC-----EEEH
Confidence 455555555533 3556789999999999998886642 34557888999995 4677766642 6788
Q ss_pred Hhhhhhc---------CCCeEEEEeCCchhhHHHHHHhhcccCCCCCCCCCcceEEEEecCCCCCCCCCCCCCchhhhhc
Q 000681 227 SDLDSWL---------KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSC 297 (1354)
Q Consensus 227 ~~l~~~~---------~~p~~~v~dc~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~D~ftsc 297 (1354)
.+|.+.+ |.|-+||+|..-....-..+....+. ... .+......+. ...-++|+|-+.
T Consensus 100 ~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~----~~~--------~~~~~~~~~~-~~p~~~D~li~y 166 (241)
T smart00115 100 DEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDV----DDP--------PTEFEDDAIY-KIPVEADFLAAY 166 (241)
T ss_pred HHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCeeccccc----ccc--------cccccccccc-cCCCcCcEEEEE
Confidence 8888877 67999999987543211111000000 000 0001111111 122478999999
Q ss_pred ccchHHHHHH
Q 000681 298 LTTPITMALR 307 (1354)
Q Consensus 298 l~tP~~~al~ 307 (1354)
-|.|-..|.+
T Consensus 167 sT~pG~va~r 176 (241)
T smart00115 167 STTPGYVSWR 176 (241)
T ss_pred eCCCCeEeec
Confidence 9999988754
|
Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.49 E-value=49 Score=43.82 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=68.4
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-------CeEEEEEEc---------------CCCCEEEEEECCCeE
Q 000681 1153 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQ---------------VHGGQLAAGFVDGSV 1210 (1354)
Q Consensus 1153 ~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~-------~Vtsl~~~s---------------~~g~~L~sgs~DGsV 1210 (1354)
++.+++++.++.|.-.|.++++ .+..+...... ....+..+. ..+..++.++.||.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 5777778778888888888888 66655432211 012232222 134578889999999
Q ss_pred EEEECCCCCeeeEeecCC---------CCCCCCeEEEEEecCCCCCEEEEEEC----------CCcEEEEeCCCCCccEE
Q 000681 1211 RLYDVRTPDMLVCSTRPH---------TQQVERVVGISFQPGLDPAKIVSASQ----------AGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1211 rIwDlr~~~~~~~~~~~~---------~~h~~~I~sv~fsp~~~g~~Lasgs~----------DG~I~IWDl~~~~~~v~ 1271 (1354)
.-.|.++++.+.. +... ......-..+.-.|-..+..+++|+. +|.|+-+|.+++ +.+.
T Consensus 273 iALDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl~W 350 (764)
T TIGR03074 273 IALDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-ALVW 350 (764)
T ss_pred EEEECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-cEee
Confidence 9999999985432 2110 00000000111111111345666643 688999999998 4555
Q ss_pred EEe
Q 000681 1272 TID 1274 (1354)
Q Consensus 1272 ~l~ 1274 (1354)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.2 Score=56.26 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=97.9
Q ss_pred ChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000681 544 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623 (1354)
Q Consensus 544 ~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~ 623 (1354)
+|.=+++..+..+. |+|.||=+=|...-...|..+..|++.- +.++- |++|++|.-++=-+|.+.-
T Consensus 50 lF~dvvk~~~T~dl--elKKlvyLYl~nYa~~~P~~a~~avnt~--------~kD~~----d~np~iR~lAlrtm~~l~v 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL--ELKKLVYLYLMNYAKGKPDLAILAVNTF--------LKDCE----DPNPLIRALALRTMGCLRV 115 (734)
T ss_pred hhHHHHhhcccCCc--hHHHHHHHHHHHhhccCchHHHhhhhhh--------hccCC----CCCHHHHHHHhhceeeEee
Confidence 34445555555665 9999998888666666666555544332 22321 8899999877666665543
Q ss_pred cchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhhccC
Q 000681 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 703 (1354)
Q Consensus 624 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 703 (1354)
+ .+-+.+.+-|..+++|..|.||+.+++....+-....+.+ .+..+...|-.++.|
T Consensus 116 ~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~-----------------~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 116 D-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV-----------------EDSGLVDALKDLLSD 171 (734)
T ss_pred h-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc-----------------cccchhHHHHHHhcC
Confidence 3 2345566688999999999999999999998874332211 123445566667779
Q ss_pred CChhhhHHHHHHHHHHHHhhh
Q 000681 704 GSPLVRAEVAVALARFAFGHK 724 (1354)
Q Consensus 704 ~sp~VR~e~~~~l~~~v~~~~ 724 (1354)
.+|+|-.-++.++.-++....
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCC
Confidence 999999999988887776653
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.10 E-value=53 Score=38.54 Aligned_cols=278 Identities=14% Similarity=0.075 Sum_probs=121.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceEEEee--CCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEE
Q 000681 1039 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFD--NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1115 (1354)
Q Consensus 1039 ~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg-~~l~~~~--~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIW 1115 (1354)
.....+..|.|.....-+++|. .+. |+...+| +.=.... ...+..-...++.|. +...+++ +..|.| +
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~iv-G~~g~l--l 84 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIV-GEPGLL--L 84 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEE-EETTEE--E
T ss_pred CCCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEec---CCceEEE-cCCceE--E
Confidence 4457899999996666666665 453 4444433 2211111 111111346677772 3334444 455643 3
Q ss_pred EccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeEEEEEEc
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~~~~Vtsl~~~s 1195 (1354)
...+.....+.+..-..+.+ .... +... ..+...+++..|.|+.=. ..++ .-..+.......+..+ ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpg---s~~~----i~~l-~~~~~~l~~~~G~iy~T~-DgG~-tW~~~~~~~~gs~~~~-~r~ 153 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPG---SPFG----ITAL-GDGSAELAGDRGAIYRTT-DGGK-TWQAVVSETSGSINDI-TRS 153 (302)
T ss_dssp EESSTTSS-EE----TT-SS----EEE----EEEE-ETTEEEEEETT--EEEES-STTS-SEEEEE-S----EEEE-EE-
T ss_pred EecCCCCCcEEeecCCCCCC---CeeE----EEEc-CCCcEEEEcCCCcEEEeC-CCCC-CeeEcccCCcceeEeE-EEC
Confidence 33222222222200001111 1111 2222 233444455556543321 2222 2222222233347777 566
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec
Q 000681 1196 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1196 ~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~ 1275 (1354)
++|++++++.......-||--... ...... .....|.++.|.|+ +...+.+ ..|.|++=+... ...++..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r--~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~---~~~~w~~ 223 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTT--WQPHNR--NSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPD---DGETWSE 223 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS---EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TT---EEEEE--
T ss_pred CCCcEEEEECcccEEEEecCCCcc--ceEEcc--CccceehhceecCC--CCEEEEe-CCcEEEEccCCC---Ccccccc
Confidence 788888777655555677754322 111111 12378999999998 6666644 888888877221 1222221
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000681 1276 -------HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1276 -------h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
..-.+..++|.+++.+.|+|+. |.+..=.-.|+.=...+. -. .-.+.+..+.|....+-++.| .||
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~-~~----~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRV-GE----NVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GG-GT----TSSS---EEEEEETTEEEEE--STT
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECcc-cc----CCCCceEEEEEcCCCceEEEC-CCc
Confidence 2234789999999888887764 444332233444333322 11 113568889998776666665 688
Q ss_pred eEEEc
Q 000681 1349 CVSIH 1353 (1354)
Q Consensus 1349 ~V~IW 1353 (1354)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87655
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.70 E-value=14 Score=47.71 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeE-----eecC--------CCC-----CCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVC-----STRP--------HTQ-----QVERVVGISFQPGLDPAKIVSASQAGDIQ 1259 (1354)
Q Consensus 1198 g~~L~sgs~DGsVrIwDlr~~~~~~~-----~~~~--------~~~-----h~~~I~sv~fsp~~~g~~Lasgs~DG~I~ 1259 (1354)
+++++++. .+.|.||+.+....... .+.. ... ....|+.+.+.--++..+|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666655 67899998864332110 0000 000 11335566554434567899999999999
Q ss_pred EEeCCCC-----------C--------ccEEEEecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCC--ceEEEEec
Q 000681 1260 FLDIRNH-----------K--------DAYLTIDAHRGSLSALAVH--RHAPIIASGSAKQLIKVFSLEG--EQLGTIRY 1316 (1354)
Q Consensus 1260 IWDl~~~-----------~--------~~v~~l~~h~~~VtsLafs--pdg~~Lasgs~Dg~I~Iwd~~g--~~l~~i~~ 1316 (1354)
+|.+..- + .|...+. -....+++++| ...++||+++....|.||-... +.......
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 9975310 0 1222222 23478999999 8888999999999999987432 11111111
Q ss_pred cCCccccccCCCeEEEEEecCC------CEEEEEECCCeEEEcC
Q 000681 1317 HHPSFMAQKIGSVNCLTFHPYQ------VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1317 ~h~~fl~~~~~~V~sLafspdg------~~Lasgs~Dg~V~IWd 1354 (1354)
| .+...|-+++|-++. ..|++++-.|.+.+|+
T Consensus 207 -~-----~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 207 -H-----QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred -c-----ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 2 134678999997655 2677788899888763
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=10 Score=48.14 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=71.7
Q ss_pred CCCeEEEEECC-----CeEEEEECCCCce-eeeeecCCCCCCeEEEEEEcCCCCEEEEEECC------CeEEEEECCCCC
Q 000681 1152 QSGYLYASGEV-----SSIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVD------GSVRLYDVRTPD 1219 (1354)
Q Consensus 1152 ~~~~Lla~g~D-----g~I~VWDl~t~~~-~v~~i~~~~~~~Vtsl~~~s~~g~~L~sgs~D------GsVrIwDlr~~~ 1219 (1354)
++..++.||.+ ..+..||..+.+- ....++..... .++ ...++++.+.|+.+ ..+..||..+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~--~~~--~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN--PCV--VNVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc--ceE--EEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 45555666644 3577888877650 11112211111 112 12256777777732 458899988654
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC--------cEEEEeCCCCCccEEEEec---CCCCeEEEEEcCC
Q 000681 1220 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRH 1288 (1354)
Q Consensus 1220 ~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG--------~I~IWDl~~~~~~v~~l~~---h~~~VtsLafspd 1288 (1354)
-.. ........... ++.. -+ +..++.|+.++ .+.+||..+.. ...+.. .......+.+ +
T Consensus 418 -W~~-~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 418 -WSK-GSPLPISHYGG-CAIY-HD--GKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--N 487 (534)
T ss_pred -eee-cCCCCccccCc-eEEE-EC--CEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--C
Confidence 111 11111000111 2222 23 56777776432 38889987652 222211 1111122222 5
Q ss_pred CCEEEEEeCC-----CcEEEEeCCCceEEEE
Q 000681 1289 APIIASGSAK-----QLIKVFSLEGEQLGTI 1314 (1354)
Q Consensus 1289 g~~Lasgs~D-----g~I~Iwd~~g~~l~~i 1314 (1354)
+.+++.|+.+ +.|.+||.+...=..+
T Consensus 488 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 488 NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 6677777654 4678888665543333
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.50 E-value=3.7 Score=53.00 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchh
Q 000681 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA 639 (1354)
Q Consensus 560 ~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~ 639 (1354)
-.|...|=||+.++-..|+ .++..+-..+. .+.|-.|.-++-+.--.+.+.+.--..-+. ....
T Consensus 947 gtR~vvAECLGkL~l~epe--------sLlpkL~~~~~-------S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig 1010 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVLIEPE--------SLLPKLKLLLR-------SEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIG 1010 (1233)
T ss_pred hhHHHHHHHhhhHHhCChH--------HHHHHHHHHhc-------CCCcchhhhhhheeeeeecCCCCccCHHHH-HHHH
Confidence 4688889999988744433 45555656666 778888888887777666654332222222 2334
Q ss_pred hHhhhhcCCChHHHHHHHHHHhhccccC
Q 000681 640 IYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1354)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1354)
.++.++.||.++||.+++.+|.+++...
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 7899999999999999999999999543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.45 Score=60.26 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCeEEEEEecC-CCCCEEEEEECCCcEEEEeCCCCCccEEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCCc
Q 000681 1233 ERVVGISFQPG-LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALA-----------VHRHAPIIASGSAKQL 1300 (1354)
Q Consensus 1233 ~~I~sv~fsp~-~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~h~~~VtsLa-----------fspdg~~Lasgs~Dg~ 1300 (1354)
..+.-|.|.|- -+.-++..+-.+|.|++..+... ....+++|...++.++ .+|||.++|+.+.||.
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechH--HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 44455666553 12567788888899998887654 3345566766555443 6899999999999999
Q ss_pred EEEEe--CCCc----eEEEEeccCCccccccCCCeEEEEEecCC---------CEEEEEEC-CCeEEEcC
Q 000681 1301 IKVFS--LEGE----QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ---------VLLAAGSA-DACVSIHS 1354 (1354)
Q Consensus 1301 I~Iwd--~~g~----~l~~i~~~h~~fl~~~~~~V~sLafspdg---------~~Lasgs~-Dg~V~IWd 1354 (1354)
+++|. +.|+ ++...+. |. .++-.|.-|+.+. .++++++. ...+++|.
T Consensus 259 v~f~Qiyi~g~~~~rclhewkp-hd------~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKP-HD------KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred cceeeeeeeccccHhhhhccCC-CC------CCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 99998 4554 3444555 54 1333333354432 34555554 45677773
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.35 E-value=52 Score=37.60 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=111.1
Q ss_pred EEEeCCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCceEEEeeCCC-CCCCCeEEEEEEeeCCCCEEEEEeCCC
Q 000681 1034 ACWDTRFEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNG 1110 (1354)
Q Consensus 1034 ~iWd~~~~~~I~sL~fspdg~~Latgs~Dg--~I~IWd~~tg~~l~~~~~h~-~~~~~ItsL~f~~s~d~~~L~tgs~DG 1110 (1354)
..+-.....-...+.|..+|.++-+.+.-| .|+.+|.++|+.+....-.. ..+ -.+... ++.+..-.-.+|
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg---EGit~~---~d~l~qLTWk~~ 110 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG---EGITIL---GDKLYQLTWKEG 110 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E---EEEEEE---TTEEEEEESSSS
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc---eeEEEE---CCEEEEEEecCC
Confidence 334444445677888988888777777555 79999999998877655432 111 233442 444555555789
Q ss_pred eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CC---
Q 000681 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DC--- 1186 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~i~~~~-~~--- 1186 (1354)
...+||..+ .+.+..+. +.+ .=+. ++ .++..|+.+.....++.+|..+-+ .++.+.... +.
T Consensus 111 ~~f~yd~~t----l~~~~~~~-y~~---EGWG----Lt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 111 TGFVYDPNT----LKKIGTFP-YPG---EGWG----LT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVS 175 (264)
T ss_dssp EEEEEETTT----TEEEEEEE--SS---S--E----EE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE--
T ss_pred eEEEEcccc----ceEEEEEe-cCC---cceE----EE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECC
Confidence 999999855 23332221 222 2233 33 367888888888899999998877 666655321 11
Q ss_pred CeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec---------CCC---CCCCCeEEEEEecCCCCCEEEEE
Q 000681 1187 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR---------PHT---QQVERVVGISFQPGLDPAKIVSA 1252 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~---------~~~---~h~~~I~sv~fsp~~~g~~Lasg 1252 (1354)
.++-+.+. +|.+.+-.-....|...|..+++ +...+. ... ....-.+.|++.|. .+.+++||
T Consensus 176 ~LNELE~i--~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-~~~l~vTG 249 (264)
T PF05096_consen 176 NLNELEYI--NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-TDRLFVTG 249 (264)
T ss_dssp -EEEEEEE--TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred CcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-CCEEEEEe
Confidence 24555444 55555555556677777888887 332221 000 11356889999998 56666666
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.34 E-value=35 Score=38.91 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=86.0
Q ss_pred CeEEEEEEcCCCCEEEEEE-CC--CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEe-
Q 000681 1187 SISALTASQVHGGQLAAGF-VD--GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD- 1262 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~sgs-~D--GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWD- 1262 (1354)
.+.+. ..+++++.++... .+ ..++++..... ..... .+ ..+..-.|+++ +...+....+...+++.
T Consensus 25 ~~~s~-AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~---~g--~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSP-AVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL---TG--GSLTRPSWDPD--GWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccce-EECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec---cC--CccccccccCC--CCEEEEEcCCCceEEEEe
Confidence 36777 6788888777665 23 34555543332 22221 11 46888899998 88877777777777773
Q ss_pred CCCCCccEEEEecC--CCCeEEEEEcCCCCEEEEEe---CCCcEEEEeC----CCceEEEEeccCCccccccCCCeEEEE
Q 000681 1263 IRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGS---AKQLIKVFSL----EGEQLGTIRYHHPSFMAQKIGSVNCLT 1333 (1354)
Q Consensus 1263 l~~~~~~v~~l~~h--~~~VtsLafspdg~~Lasgs---~Dg~I~Iwd~----~g~~l~~i~~~h~~fl~~~~~~V~sLa 1333 (1354)
...+......+... .+.|+.+.++|||..+|... .++.|.|--+ +|.. ..+..... ........+.+++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~-~~l~~~~~-~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP-RRLTGPRR-VAPPLLSDVTDVA 172 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc-ceeccceE-ecccccCcceeee
Confidence 23332122222221 12799999999999776654 3567776652 2311 11111010 0111246789999
Q ss_pred EecCCCEEEEEEC
Q 000681 1334 FHPYQVLLAAGSA 1346 (1354)
Q Consensus 1334 fspdg~~Lasgs~ 1346 (1354)
|.+++.+++.+..
T Consensus 173 W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 173 WSDDSTLVVLGRS 185 (253)
T ss_pred ecCCCEEEEEeCC
Confidence 9999988777665
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.32 Score=61.59 Aligned_cols=207 Identities=15% Similarity=0.184 Sum_probs=103.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEeCCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEec---CCCeEEEEECCC
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ---QSGYLYASGEVS 1163 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp---~~~~Lla~g~Dg 1163 (1354)
+.|-.+.|- +.+...+. -.-|...|||+..-+|+....--..........+.- +.|.| +..++..+-+++
T Consensus 133 G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~----V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 133 GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL----VSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcce----eeecccccccceeeeccCCC
Confidence 566677773 23333333 344778899986544433211111111112222221 44443 344555555778
Q ss_pred eEEEEECCCCceeeeeecCCCCC---------CeEEEEEEcCCCCEEEEEECCCeEEEEECC-CCCe---eeEeecCCCC
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSSDC---------SISALTASQVHGGQLAAGFVDGSVRLYDVR-TPDM---LVCSTRPHTQ 1230 (1354)
Q Consensus 1164 ~I~VWDl~t~~~~v~~i~~~~~~---------~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr-~~~~---~~~~~~~~~~ 1230 (1354)
.|++....+.. ...+..|... .+.-+...++||..|+..+.||.+++|-+. +++. +...++.+.+
T Consensus 206 ~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 206 EIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred ceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 88888777654 2334444433 122334468999999999999999998875 2221 3334444443
Q ss_pred CCCCeEEEEEecC-------CCCCEEEEEE-CCCcEEEEeCCCCCccE--------EEEecCCCCeEEEEEcCC-CCEEE
Q 000681 1231 QVERVVGISFQPG-------LDPAKIVSAS-QAGDIQFLDIRNHKDAY--------LTIDAHRGSLSALAVHRH-APIIA 1293 (1354)
Q Consensus 1231 h~~~I~sv~fsp~-------~~g~~Lasgs-~DG~I~IWDl~~~~~~v--------~~l~~h~~~VtsLafspd-g~~La 1293 (1354)
| +-.|..++.+ ..-.++++++ .+..+++|..... .++ .....|.+.|+.+..... -..++
T Consensus 284 ~--p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w-~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 284 H--PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW-QCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred C--CceeeeeccccccCCccceeEEEEecccCCcceeEeeccch-hhhhhhcccceEeecCCCccccchhhhHHHHHHHH
Confidence 3 2233333322 0012334443 4566999987665 233 111123333322211110 00133
Q ss_pred EEeCCCcEEEEe
Q 000681 1294 SGSAKQLIKVFS 1305 (1354)
Q Consensus 1294 sgs~Dg~I~Iwd 1305 (1354)
+.+-++.|++|.
T Consensus 361 ~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQ 372 (1283)
T ss_pred HhhhHHHHHHhh
Confidence 456688889986
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.87 E-value=79 Score=42.18 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=105.4
Q ss_pred EEEeCCCCCCeEEEEEc---C--C--CCEEEEEECCCcEEEEECC------C---------CceEEEeeCCCCCCCCeEE
Q 000681 1034 ACWDTRFEKGTKTALLQ---P--F--SPIVVAADENERIKIWNYE------E---------DTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1034 ~iWd~~~~~~I~sL~fs---p--d--g~~Latgs~Dg~I~IWd~~------t---------g~~l~~~~~h~~~~~~Its 1091 (1354)
..|.+..+.+|..|+|. . + .++|++=. ...+.|+... . ...+..+..+...+....+
T Consensus 72 ~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 72 GAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred ceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 55888889999999998 2 1 13565554 5667777621 1 1344455544444567889
Q ss_pred EEEEeeCCCCEEEEEeCCCeEEEEEccCC-CCcceEEeeeecccCCCCCc------ccceeEEEEecCCCeEEEEECCCe
Q 000681 1092 LCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGV------RCSNVVVDWQQQSGYLYASGEVSS 1164 (1354)
Q Consensus 1092 L~f~~s~d~~~L~tgs~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~~~V------~si~~~v~~sp~~~~Lla~g~Dg~ 1164 (1354)
++|. ..+...|++....|.-.||++... +.... .++....+.+.+ .+.-..+.|..+.+.|+++.. ..
T Consensus 151 v~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~---~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 151 VAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKRKSS---NLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred EEec-cCccceEEEEeccCcEEEEEeccccccCCc---ceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 9994 346679999999999999999221 11111 111111222222 111123789888788887654 45
Q ss_pred EEEEECCCCceeee-eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000681 1165 IMLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1217 (1354)
Q Consensus 1165 I~VWDl~t~~~~v~-~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~ 1217 (1354)
+.++|+++.. ... .+.......|..+...+.+..+++.-+ ...|...|+..
T Consensus 226 l~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 8999999877 422 333334455888854443333333332 36788888887
|
These proteins are found in fungi. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=87.60 E-value=2.2 Score=41.14 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhh
Q 000681 566 AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL 645 (1354)
Q Consensus 566 af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll 645 (1354)
..+|+.++-..+.. ..-.-..++.-.+..+. |+++.||..+|=+|..+.....+.- ...-..+-..|.+++
T Consensus 7 li~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~-------D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 7 LIGLAAVAIALGKD-ISKYLDEILPPVLKCFD-------DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHHHchHh-HHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455554443332 22345566666777777 8999999999999999975533211 112344556788999
Q ss_pred cCCChHHHHHHHH
Q 000681 646 SEPQPEVRASAVF 658 (1354)
Q Consensus 646 ~D~sP~VRaa~v~ 658 (1354)
.|+.|.||.++-+
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 9999999999854
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.57 E-value=83 Score=41.41 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEC---------CCCce--E-EEeeC----C-CCCCCCeEEEEEEee-CCCCEE
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNY---------EEDTL--L-NSFDN----H-DFPDKGISKLCLVNE-LDVSLL 1103 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~---------~tg~~--l-~~~~~----h-~~~~~~ItsL~f~~s-~d~~~L 1103 (1354)
..|..|.++++|.+|+..|..|.+.+.=. +.|+. . +++.. + ......|..+.|+|. .++..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 45888999999999999987665444321 11211 1 11110 0 112257889999753 257899
Q ss_pred EEEeCCCeEEEEEccCCC
Q 000681 1104 LVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1104 ~tgs~DG~IrIWdl~~~~ 1121 (1354)
++-.+|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999996533
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.48 E-value=9.6 Score=45.96 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=76.6
Q ss_pred eEEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000681 1188 ISALTASQVHGGQLAAGF-----------VDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1255 (1354)
Q Consensus 1188 Vtsl~~~s~~g~~L~sgs-----------~DG-sVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D 1255 (1354)
...| .+.++|+++++-. ..+ .|.+++-..+.-.......+.........+++.++ + +++ ++..
T Consensus 16 P~~i-a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~--G-lyV-~~~~ 90 (367)
T TIGR02604 16 PIAV-CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG--G-VYV-ATPP 90 (367)
T ss_pred Ccee-eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC--C-EEE-eCCC
Confidence 4566 5566777666642 223 67676654322111111011111245678888887 6 444 4444
Q ss_pred CcEEEEeCCCCC------ccE-EEEec----CCCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEe
Q 000681 1256 GDIQFLDIRNHK------DAY-LTIDA----HRGSLSALAVHRHAPIIASGSAK-------------------QLIKVFS 1305 (1354)
Q Consensus 1256 G~I~IWDl~~~~------~~v-~~l~~----h~~~VtsLafspdg~~Lasgs~D-------------------g~I~Iwd 1305 (1354)
...++.|..... +.+ ..+.. +......++|.|+|.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 333344553211 111 22222 13457889999999866654421 3455555
Q ss_pred CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000681 1306 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1306 ~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
.++..+..+.. .......++|+++|.++++-..
T Consensus 171 pdg~~~e~~a~--------G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLRVVAH--------GFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEEEEec--------CcCCCccceECCCCCEEEEccC
Confidence 55555544433 1234678999999988876543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=16 Score=45.72 Aligned_cols=143 Identities=8% Similarity=-0.002 Sum_probs=67.8
Q ss_pred CCCEEEEEeCC--CeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECC---CeEEEEECCCC
Q 000681 1099 DVSLLLVASCN--GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKE 1173 (1354)
Q Consensus 1099 d~~~L~tgs~D--G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~D---g~I~VWDl~t~ 1173 (1354)
++.+.+.||.+ ..+..||..+ +... .......+....+. +.. ++...+.||.+ ..+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~--n~W~------~~~~l~~~r~~~~~-~~~--~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGD--AAWV------NMPSLLKPRCNPAV-ASI--NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCC--CeEE------ECCCCCCCCcccEE-EEE--CCEEEEecCcCCCCccEEEEeCCCC
Confidence 67777777754 3567777643 2222 22222212222111 111 44455555644 35778998776
Q ss_pred ceeee--eecCCCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000681 1174 QQMVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1251 (1354)
Q Consensus 1174 ~~~v~--~i~~~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Las 1251 (1354)
+ -.. .++..... .++.. -+|.+.+.| |.+.+||.++++ - ............. +++.. + +.+.+.
T Consensus 387 ~-W~~~~~m~~~r~~--~~~~~--~~~~IYv~G---G~~e~ydp~~~~-W-~~~~~m~~~r~~~-~~~v~-~--~~IYvi 452 (480)
T PHA02790 387 Q-WQFGPSTYYPHYK--SCALV--FGRRLFLVG---RNAEFYCESSNT-W-TLIDDPIYPRDNP-ELIIV-D--NKLLLI 452 (480)
T ss_pred E-EEeCCCCCCcccc--ceEEE--ECCEEEEEC---CceEEecCCCCc-E-eEcCCCCCCcccc-EEEEE-C--CEEEEE
Confidence 5 211 11111111 12212 256666766 457889987765 2 1221221111222 22222 3 678888
Q ss_pred EECC-----CcEEEEeCCCC
Q 000681 1252 ASQA-----GDIQFLDIRNH 1266 (1354)
Q Consensus 1252 gs~D-----G~I~IWDl~~~ 1266 (1354)
|+.+ ..|..||..++
T Consensus 453 GG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 453 GGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcCCCcccceEEEEECCCC
Confidence 8754 34667776654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.87 E-value=80 Score=38.09 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=75.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEe-----------CCC-eEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCC
Q 000681 1087 KGISKLCLVNELDVSLLLVAS-----------CNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~L~tgs-----------~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~ 1154 (1354)
.....|+| .++|+++++-. ..+ .|.+++..+..++....+. +......... +++.+++
T Consensus 14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v---fa~~l~~p~G----i~~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV---FAEELSMVTG----LAVAVGG- 83 (367)
T ss_pred CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE---eecCCCCccc----eeEecCC-
Confidence 35567888 56777766642 223 6777765543444322211 2222222344 6666555
Q ss_pred eEEEEECCCeEEEEECCCC-----c--eeeeeecCC---CCCCeEEEEEEcCCCCEEEEEECC-----------------
Q 000681 1155 YLYASGEVSSIMLWDLEKE-----Q--QMVNPIPSS---SDCSISALTASQVHGGQLAAGFVD----------------- 1207 (1354)
Q Consensus 1155 ~Lla~g~Dg~I~VWDl~t~-----~--~~v~~i~~~---~~~~Vtsl~~~s~~g~~L~sgs~D----------------- 1207 (1354)
++++......++.|.... + ..+..+... .......+ .+.++|.+.++-+..
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l-~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL-AWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc-eECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 666655554445565321 1 022223321 11225667 567788776654421
Q ss_pred --CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000681 1208 --GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1255 (1354)
Q Consensus 1208 --GsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~D 1255 (1354)
|.|.-+|....+ . ..+ . .+ -.....++|++. |+++++-..+
T Consensus 162 ~~g~i~r~~pdg~~-~-e~~-a-~G-~rnp~Gl~~d~~--G~l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGK-L-RVV-A-HG-FQNPYGHSVDSW--GDVFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCe-E-EEE-e-cC-cCCCccceECCC--CCEEEEccCC
Confidence 445555555443 1 222 1 11 134568899998 8887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) | Back alignment and domain information |
|---|
Probab=86.84 E-value=4.2 Score=46.10 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhc-cC-CCceEEEEEcCCCCCCCCCCceEEEecCCCCeeeecchH
Q 000681 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRR-YA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPIS 227 (1354)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~-~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~~y~p~~~~ 227 (1354)
.+.|..-++.+.- ......|++.+++++.+..+.+ +. ..+=++|-|-|||.- |.|+--|. .++++.
T Consensus 34 ~~~l~~~f~~lgF--~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~-----~~l~~~D~-----~~v~l~ 101 (243)
T cd00032 34 AENLTKLFESLGY--EVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE-----GGIYGTDG-----DVVPID 101 (243)
T ss_pred HHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC-----CEEEEecC-----cEEEHH
Confidence 4455555555333 4567899999999999888774 33 445578889999963 77887774 467888
Q ss_pred hhhhhc---------CCCeEEEEeCCchhh
Q 000681 228 DLDSWL---------KTPSIYVFDCSAAGM 248 (1354)
Q Consensus 228 ~l~~~~---------~~p~~~v~dc~~ag~ 248 (1354)
||.+.+ |.|-|||+|..-...
T Consensus 102 ~i~~~f~~~~~~sl~~kPKl~~iqACRg~~ 131 (243)
T cd00032 102 EITSLFNGDNCPSLAGKPKLFFIQACRGDE 131 (243)
T ss_pred HHHHhhccCCCccccCCCcEEEEECCCCCc
Confidence 887666 468899999876543
|
Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.65 E-value=0.9 Score=59.69 Aligned_cols=94 Identities=24% Similarity=0.306 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhh-cCCChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCh
Q 000681 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDD 683 (1354)
Q Consensus 605 ~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~ 683 (1354)
-.+|++++++-+|||+|+--..+ -.+..++ .|...+ +.++|.||+=+|++||-|.=...+.
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~----fces~l~-llftimeksp~p~IRsN~VvalgDlav~fpnl------------- 995 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAE----FCESHLP-LLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL------------- 995 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHH----HHHHHHH-HHHHHHhcCCCceeeecchheccchhhhcccc-------------
Confidence 44699999999999999843211 1122222 344444 5999999999999999887322111
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhhhHHHHHHHHHHHHh
Q 000681 684 DEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 684 ~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
+|. ....|+..+.|.++.||+-++..+++++..
T Consensus 996 -----ie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 996 -----IEP-WTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred -----cch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 011 123577788999999999999999998764
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=86.36 E-value=79 Score=37.55 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=27.0
Q ss_pred eEEEEECCCCceeeeeecCCC----CCCeEEEEEEcCCCCEEEEEECC-------------CeEEEEECCCCC
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSS----DCSISALTASQVHGGQLAAGFVD-------------GSVRLYDVRTPD 1219 (1354)
Q Consensus 1164 ~I~VWDl~t~~~~v~~i~~~~----~~~Vtsl~~~s~~g~~L~sgs~D-------------GsVrIwDlr~~~ 1219 (1354)
.|.+||..+.+ -..+.... ...-.+++.. ++++++.|+.+ ..|.+||..+.+
T Consensus 160 ~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 160 TIEAYNIADGK--WVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred eEEEEECCCCe--EeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 57889988765 22222110 0001122122 56666665532 468889988765
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=86.29 E-value=82 Score=39.72 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCCCceEEEeeCCCcEEEEeCCCC-------------CCeEEEEEcCCC-CEEEEEECCCcEE--EEECCCCceEEEeeC
Q 000681 1018 SCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQPFS-PIVVAADENERIK--IWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1018 ~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fspdg-~~Latgs~Dg~I~--IWd~~tg~~l~~~~~ 1081 (1354)
....+.++.+..+|.+..-..... ...+++.+-.+| .+|+.|+.-|.=. -|....-+.+..+.+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 344456666667765544333321 234455555444 4777887555544 444333456666666
Q ss_pred CCCCCCCeEEEEEEeeC--CCC------EEEEEe---CCCeEEEEEccCCCCcceEEeeeecccCCCCCcccceeEEEEe
Q 000681 1082 HDFPDKGISKLCLVNEL--DVS------LLLVAS---CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1150 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~--d~~------~L~tgs---~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~s 1150 (1354)
-. +|.+++..... ... .|++++ .+|.+++....- +..........+.+ ...++. +...
T Consensus 299 ~~----Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi--~~~~~~~~~~~l~~-v~~iW~----l~~~ 367 (504)
T PF10433_consen 299 WG----PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGI--GIEGLELASSELPG-VTGIWT----LKLS 367 (504)
T ss_dssp ------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESB--EEE--EEEEEEEST-EEEEEE----E-SS
T ss_pred cC----CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccC--CceeeeeeccCCCC-ceEEEE----eeec
Confidence 55 89999986321 122 566654 468899987522 11101111112222 122222 2211
Q ss_pred c-CCCeEEEEECCCeEEEEECC---CCceeeeeecC-CCCCCeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000681 1151 Q-QSGYLYASGEVSSIMLWDLE---KEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225 (1354)
Q Consensus 1151 p-~~~~Lla~g~Dg~I~VWDl~---t~~~~v~~i~~-~~~~~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~ 1225 (1354)
. ++.+++.+.. ..-+++.+. ... .+..+.. .-......+.+..-.++.++-.+.. .|++.|....+ ....+
T Consensus 368 ~~~~~~lv~S~~-~~T~vl~~~~~d~~e-~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~-~~~~w 443 (504)
T PF10433_consen 368 SSDHSYLVLSFP-NETRVLQISEGDDGE-EVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGK-LTQEW 443 (504)
T ss_dssp SSSBSEEEEEES-SEEEEEEES----SS-EEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTS-EEEEE
T ss_pred CCCceEEEEEcC-CceEEEEEecccCCc-chhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCe-EEEEE
Confidence 1 1345555544 344555553 222 2222211 1111122232222235666666655 48889887666 44444
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccEEEEec----CCCCeEEEEEcC
Q 000681 1226 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA----HRGSLSALAVHR 1287 (1354)
Q Consensus 1226 ~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~~~~~~v~~l~~----h~~~VtsLafsp 1287 (1354)
... ....|.+.+.. +.+++.+-.+|.+..+.+............ ....|.|+..+|
T Consensus 444 ~~~--~~~~I~~a~~~----~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 444 KPP--AGSIIVAASIN----DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp E-T--TS---SEEEES----SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred eCC--CCCeEEEEEEC----CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 222 22556666664 457777888899999998876322222211 356788888776
|
... |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=85.99 E-value=23 Score=36.13 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCC--------ceEEEeeCCCCCCCCeEEEEEE---eeCCCCEEEEEeCCCeEE
Q 000681 1045 KTALLQPFSPIVVAADENERIKIWNYEED--------TLLNSFDNHDFPDKGISKLCLV---NELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1045 ~sL~fspdg~~Latgs~Dg~I~IWd~~tg--------~~l~~~~~h~~~~~~ItsL~f~---~s~d~~~L~tgs~DG~Ir 1113 (1354)
..-+|....+.|++++..|.|.|++.... ..+..+.-. ..|++|+-- ++.+...|+.|+.. .+.
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin----~~italaaG~l~~~~~~D~LliGt~t-~ll 76 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN----QEITALAAGRLKPDDGRDCLLIGTQT-SLL 76 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC----CceEEEEEEecCCCCCcCEEEEeccc-eEE
Confidence 34467677778999999999999987643 233334333 477777642 23356677777654 788
Q ss_pred EEEccCCCCcceEEeeeecccCCCCCcccceeEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1179 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl~t~~~~v~~ 1179 (1354)
.||++.. ..+. .++....+.++.+ -.+......++..|.+..|.-||.+..+ ...+
T Consensus 77 aYDV~~N---~d~F-----yke~~DGvn~i~~-g~~~~~~~~l~ivGGncsi~Gfd~~G~e-~fWt 132 (136)
T PF14781_consen 77 AYDVENN---SDLF-----YKEVPDGVNAIVI-GKLGDIPSPLVIVGGNCSIQGFDYEGNE-IFWT 132 (136)
T ss_pred EEEcccC---chhh-----hhhCccceeEEEE-EecCCCCCcEEEECceEEEEEeCCCCcE-EEEE
Confidence 9999662 2222 3455566666433 2333334556666667778888877666 4443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.54 E-value=14 Score=48.15 Aligned_cols=143 Identities=17% Similarity=0.075 Sum_probs=87.0
Q ss_pred cchhhHHHHhhchhhhhHHHHHHHHHhcCCHHHHHHHHhcCChhH--HHHhhccCchh------hhhH---HHHHHHHHh
Q 000681 461 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPY--VLKLLQTTTPE------LRQI---LVFIWTKIL 529 (1354)
Q Consensus 461 ~~lP~vLq~LlS~~~rlral~ll~~fld~g~wAv~lal~~gifpy--vlklL~s~~~e------lr~~---~~FIwa~i~ 529 (1354)
.+|+-++.+|+|+--..-|+..+-.|. .-+|+-. -..++| .+.+|+.|..| +|+. ++-+.|.++
T Consensus 734 ~iL~~ii~ll~Spllqg~al~~~l~~f---~alV~t~--~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt 808 (1233)
T KOG1824|consen 734 PILDEIIRLLRSPLLQGGALSALLLFF---QALVITK--EPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT 808 (1233)
T ss_pred hhHHHHHHHhhCccccchHHHHHHHHH---HHHHhcC--CCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHH
Confidence 378888999999877766766444444 0222222 223343 46777766433 2221 344444444
Q ss_pred hcChhhhhhhhcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHH
Q 000681 530 ALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPL 609 (1354)
Q Consensus 530 ~~~~~~Q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~ 609 (1354)
...+ |.. ...-.-++.-++.+....--|-.+.+.|+.+-++.+.. -..++....++.++ .|..+
T Consensus 809 ~~~~--~~s---~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~-------sp~ed 872 (1233)
T KOG1824|consen 809 CACP--QKS---KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFN-------SPSED 872 (1233)
T ss_pred Hhcc--ccc---hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcC-------CChHH
Confidence 4333 110 11223344444444444677889999999997666553 24556678888888 89999
Q ss_pred HHHHHHHHHHHhhcc
Q 000681 610 FLQWLCLCLGKLWED 624 (1354)
Q Consensus 610 vR~w~~l~Lg~l~~~ 624 (1354)
|+.++.+|||.+--+
T Consensus 873 vksAAs~ALGsl~vg 887 (1233)
T KOG1824|consen 873 VKSAASYALGSLAVG 887 (1233)
T ss_pred HHHHHHHHhhhhhcC
Confidence 999999999998753
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=85.29 E-value=4 Score=51.10 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=68.2
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH
Q 000681 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1354)
Q Consensus 549 ~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~ 628 (1354)
..+|......+..|+++|=.++.+++.||. +...+++..+.+.+ |.+..||.+++=.|-.|+.+.++.
T Consensus 26 ~~il~~~kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcE-------Ded~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 26 KEILDGVKGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCE-------DEDVQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHHHGGGS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--------SSHHHHHHHHHHGGGG--T--T-
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHh-------cccHHHHHHHHHhHHHHHHhHHHH
Confidence 344433223478999999999999999999 56678888899998 889999999999999999875431
Q ss_pred hHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 629 ~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
- ..++..|..||.-..|..+.++=-+|-+++
T Consensus 94 v-----~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 94 V-----SKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp H-----HHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred H-----hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 224557888888777777777766776665
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.10 E-value=17 Score=46.54 Aligned_cols=120 Identities=13% Similarity=0.188 Sum_probs=74.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEeCCCeEEEEEcc---
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY--- 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~~~~h~~~~~~ItsL~f~~s~d~~~L~tgs~DG~IrIWdl~--- 1118 (1354)
..++-+.-+.-++..++-+....+.|||...+.....-.- ...+.|.++.|...++++.+++.|-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 4455666666666666666677899999998865443221 11268999999888899999999999999998541
Q ss_pred -CCCC-cceEEeeeecccCCC-CCcccceeEEEEecCCCeEEEEECCCeEEEEEC
Q 000681 1119 -DQKD-KQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170 (1354)
Q Consensus 1119 -~~~~-~~~lvs~~~~l~~h~-~~V~si~~~v~~sp~~~~Lla~g~Dg~I~VWDl 1170 (1354)
+..+ ....+..+. +.+++ .+|.+ ..|.++| .+++|+ .+.+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~-i~~~T~h~Igd----s~Wl~~G-~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKID-ISSHTPHPIGD----SIWLKDG-TLVVGS-GNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEE-eecCCCCCccc----eeEecCC-eEEEEe-CCEEEEECC
Confidence 1111 111111111 23343 45655 7888655 444443 345788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.09 E-value=0.85 Score=54.00 Aligned_cols=201 Identities=17% Similarity=0.238 Sum_probs=120.4
Q ss_pred hhHHHHhcC-CCC-C--CCCCcchhhHHHHhhchhhhh--HHHH-HHHHHhcCCH------HHHHHHHhcCChhHHHHhh
Q 000681 444 TAFEVWLDH-GSE-H--KKPPEQLPIVLQVLLSQCHRF--RALV-LLGRFLDMGP------WAVDLALSVGIFPYVLKLL 510 (1354)
Q Consensus 444 tafe~~L~~-g~~-~--~~~p~~lP~vLq~LlS~~~rl--ral~-ll~~fld~g~------wAv~lal~~gifpyvlklL 510 (1354)
..|-+||-. .+- + .+--..+|.+.+++...+.+. |-++ ++.++|+.|| -+....+-.+ .+--+++|
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L 298 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSL 298 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHH
Confidence 457777643 221 1 111256777778777655442 4333 5667888885 2222222333 34444445
Q ss_pred ccC---chhhhhHHHHHHHHHhhcChhhhhhhhccc-ChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhh
Q 000681 511 QTT---TPELRQILVFIWTKILALDKSCQVDLVKDG-GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 586 (1354)
Q Consensus 511 ~s~---~~elr~~~~FIwa~i~~~~~~~Q~~l~k~~-~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~ 586 (1354)
+.. ..|+..-+-||-.+.-. +.|.-+--|. .-..+..+|..+ |-||- ..||+.+-. +----+-
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~---svq~LsSFDeY~sEl~sG~L~WS---P~Hk~------e~FW~eNa~-rlnenny 365 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKN---SVQDLSSFDEYKSELRSGRLEWS---PVHKS------EKFWRENAD-RLNENNY 365 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHH---HHHhhccHHHHHHHHHhCCcCCC---ccccc------cchHHHhHH-HHhhccH
Confidence 422 45677767777655432 2221110000 001122233322 23332 234433321 0000134
Q ss_pred cHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+++.++..+|+. ..+|.+-+-+|.=+|++..-+++++.+-.+-++-+.+..|++...|+||-.|+.|+.+++
T Consensus 366 ellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 577888889984 456999999999999999999999999999999999999999999999999999999887
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.98 E-value=9.5 Score=43.51 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=106.0
Q ss_pred hcccChhhhhhhcCCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhcHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000681 540 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 619 (1354)
Q Consensus 540 ~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg 619 (1354)
+..+.++.++.+|+..+. |..+..+.+.|+.. ..|+..|..-.+.|.+..+..+|+ +++|.+|.-++-||.
T Consensus 9 l~~~~l~~Ll~lL~~t~d-p~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~-------~p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-PFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLN-------DPNPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcC-------CCChHHHHHHHHHHH
Confidence 445567788889986654 67888888888885 889999999999999999999999 899999999999999
Q ss_pred HhhccchHHhHhhcccCchhhHhhhhcCC-ChHHHHHHHHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHh
Q 000681 620 KLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 698 (1354)
Q Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 698 (1354)
.|=.+.+... .++..+...+...+.++ ..+|.-+.+=+|..+--. .++ .+.+ ...+..++
T Consensus 80 Nls~~~en~~--~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~------------~~~--~~~l---~~~i~~ll 140 (254)
T PF04826_consen 80 NLSVNDENQE--QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT------------NDY--HHML---ANYIPDLL 140 (254)
T ss_pred hcCCChhhHH--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC------------cch--hhhH---HhhHHHHH
Confidence 8865543333 24555554444455543 457777777777777411 111 1111 11233456
Q ss_pred hhccCCChhhhHHHHHHHHHHH
Q 000681 699 TVVSDGSPLVRAEVAVALARFA 720 (1354)
Q Consensus 699 ~~~~D~sp~VR~e~~~~l~~~v 720 (1354)
.++.-|+..+|..++..+..+.
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhc
Confidence 6777778778777777665554
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.42 E-value=4.3 Score=48.25 Aligned_cols=154 Identities=10% Similarity=0.075 Sum_probs=86.9
Q ss_pred CeEEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC-CC-CCCCeE-EEEEecCCCCCEEEEEECCCcEEEE-e
Q 000681 1187 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-TQ-QVERVV-GISFQPGLDPAKIVSASQAGDIQFL-D 1262 (1354)
Q Consensus 1187 ~Vtsl~~~s~~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~-~~-h~~~I~-sv~fsp~~~g~~Lasgs~DG~I~IW-D 1262 (1354)
.|..+ ...|+|+.+..-+. ..+.++++.+..-..+..-.. .+ ....|+ ++..-. +|.-+.+++.||-|.-| |
T Consensus 222 ~v~ql-lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 222 DVSQL-LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred chHhh-EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEcCCCceeeeee
Confidence 36677 77899998887766 678888887654222211111 11 001122 111222 37888899999998776 6
Q ss_pred CCCCCcc----EEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000681 1263 IRNHKDA----YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1338 (1354)
Q Consensus 1263 l~~~~~~----v~~l~~h~~~VtsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg 1338 (1354)
.+.+..+ ++.++-...++..+.-..+.+.+++-+.+|++.++..+.+..--+.. .-..+.-++++|.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--------~~~~~~~~~~Sp~~ 369 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--------AYQAPQLVAMSPNQ 369 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--------hhcCcceeeeCccc
Confidence 6654322 11222122333333333344567777888888887744333322221 11346678999999
Q ss_pred CEEEEEECCCeEEEc
Q 000681 1339 VLLAAGSADACVSIH 1353 (1354)
Q Consensus 1339 ~~Lasgs~Dg~V~IW 1353 (1354)
.+|++-. .|.++++
T Consensus 370 ~~Ll~e~-~gki~~~ 383 (733)
T COG4590 370 AYLLSED-QGKIRLA 383 (733)
T ss_pred chheeec-CCceEEE
Confidence 9988753 5666654
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.3 Score=35.15 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=33.5
Q ss_pred hHHhHhhcccCchhhHhhhhcCCChHHHHHHHHHHhhcc
Q 000681 626 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
++.+..-++.++...|..+|++++++||.+++.||+.+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345556678888899999999999999999999999864
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=84.00 E-value=24 Score=45.23 Aligned_cols=104 Identities=10% Similarity=0.149 Sum_probs=69.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEeCC-----CCC---c
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR-----NHK---D 1268 (1354)
Q Consensus 1197 ~g~~L~sgs~DGsVrIwDlr~~~~~~~~~~~~~~h~~~I~sv~fsp~~~g~~Lasgs~DG~I~IWDl~-----~~~---~ 1268 (1354)
-++.-++.+....+.|||.+.+. .... +.+ ...+.|..+.|....+|..+++.+..+.|.+|--. +.. .
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~-lE~~-~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGV-LEYE-ESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcE-EEEe-eee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 34444444445579999999776 2211 122 33588999999765558889999999999998642 110 2
Q ss_pred cEEEE--ecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 000681 1269 AYLTI--DAHR-GSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1269 ~v~~l--~~h~-~~VtsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+++.+ ..|+ .+|.+..|.++|.+++.++ +.+.|++
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 33333 2333 5899999999998766554 5788888
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1354 | ||||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-08 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-04 |
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1354 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.004 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (175), Expect = 3e-14
Identities = 38/235 (16%), Positives = 63/235 (26%), Gaps = 19/235 (8%)
Query: 475 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 534
R AL LL + A D G+ V + L+ LR + +
Sbjct: 33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92
Query: 535 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 594
Q ++ G +R LD R A F ++ +V G + V
Sbjct: 93 IQEQVLGLGALRKLLRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL-- 149
Query: 595 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 654
M Q L L E + V L+
Sbjct: 150 -----MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204
Query: 655 SAVFSLGTLLDIGFDSCRDGVEGD-----------EECDDDEKIRAEISIIRSLL 698
+ +L +L+ R+ E + + E+ + E+ LL
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 5e-14
Identities = 43/317 (13%), Positives = 97/317 (30%), Gaps = 43/317 (13%)
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110
P ++V+A E+ IK+W+YE + H + ++ +
Sbjct: 27 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS----------------VQDISFDHS 70
Query: 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1170
+ + G + V ++ ++ +I +W++
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1171 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML--------- 1221
+ + + G +A+ D +VR++ V T +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQ---DGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1222 -----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1276
++ E + + G ++S S+ I+ D+ +T+ H
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGH 246
Query: 1277 RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFH 1335
+ + H I S + + ++V+ + + T+ H V L FH
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--------HFVTSLDFH 298
Query: 1336 PYQVLLAAGSADACVSI 1352
+ GS D V +
Sbjct: 299 KTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 1e-07
Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 29/179 (16%)
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--------- 1101
++ + ++ +++W H + IS + +S
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 1102 ------LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155
LL S + I++W L GH VR V + +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-------VGHDNWVRG----VLFHSGGKF 261
Query: 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1214
+ + + ++ +WD + ++ M ++ + +++L + + G VD +V++++
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMK--TLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.1 bits (162), Expect = 5e-12
Identities = 54/321 (16%), Positives = 116/321 (36%), Gaps = 28/321 (8%)
Query: 1052 FSP--IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL---LVA 1106
FS +A N+ +++ + +L+ + +K L + L +
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 1107 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1166
S +G D+ + + + + + + + + SG+ + +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VR 188
Query: 1167 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT---PDMLVC 1223
+WDL Q + ++ S G +AAG +D +VR++D T + L
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTV---AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 1224 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY-----------LT 1272
T + V + F D +VS S ++ +++N + +T
Sbjct: 246 ENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 1273 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNC 1331
H+ + ++A ++ I SGS + + + + G L ++ H S ++ + N
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS--VAVANG 361
Query: 1332 LTFHPYQVLLAAGSADACVSI 1352
+ P + A GS D I
Sbjct: 362 SSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 43/324 (13%), Positives = 92/324 (28%), Gaps = 43/324 (13%)
Query: 1054 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS---LLLVASCNG 1110
P + N+ ++N ++ + + V + S L CN
Sbjct: 29 PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV-----VCCVKFSNDGEYLATGCNK 83
Query: 1111 NIRIWKDYDQKDKQKL-----------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1159
++++ D +L SS +R V + G A+
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS----VCFSP-DGKFLAT 138
Query: 1160 GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1219
G ++ + +++V + S +G VR D
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWD 191
Query: 1220 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTI 1273
+ + V ++ PG I + S ++ D +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESG 250
Query: 1274 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKI-----GS 1328
H+ S+ ++ R + SGS + +K+++L+ + S +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 1329 VNCLTFHPYQVLLAAGSADACVSI 1352
V + + +GS D V
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 8e-07
Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 1149 WQQQSGYLYASGEVSSIMLWDLEKEQQM-----VNPIPSSSDCSISALTASQVHGGQLAA 1203
Y+ A ++ +WD E + N + S+ ++ ++ G + +
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 271
Query: 1204 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVER--------VVGISFQPGLDPAKIVSASQA 1255
G +D SV+L++++ + S P++ E V+ ++ + I+S S+
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKD 329
Query: 1256 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV------HRHAPIIASGSAKQLIKVFSLE 1307
+ F D ++ + HR S+ ++AV + A+GS +++ +
Sbjct: 330 RGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 1e-06
Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 1035 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK--L 1092
+ + T A+ + A + +++W+ E L+ D+ + G
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 1093 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQ 1151
+V D ++ S + ++++W + +K T S V+ V Q
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1152 QSGYLYASGEVSSIMLWDLEKEQQM---------VNPIPSSSDCSISALTASQVHGGQLA 1202
Y+ + + ++ WD + + V + ++ S+ A
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP------EYNVFA 372
Query: 1203 AGFVDGSVRLYDVR 1216
G D R++ +
Sbjct: 373 TGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 18/261 (6%)
Query: 1103 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1162
L N ++ + +++ H V C V + YL A+G
Sbjct: 31 ALKKQTNDYYILY---NPALPREIDVELHKSLDHTSVVCC----VKFSNDGEYL-ATGCN 82
Query: 1163 SSIMLWDLEKEQQ---MVNPIPSSSDCSISALTASQVHGGQLAA------GFVDGSVRLY 1213
+ ++ + + + ++ D ++S + + G +
Sbjct: 83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142
Query: 1214 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273
+ + Q S K+VS S ++ D+ LT+
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTL 201
Query: 1274 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1333
G + IA+GS + ++V+ E L SV +
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261
Query: 1334 FHPYQVLLAAGSADACVSIHS 1354
F + +GS D V + +
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWN 282
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 1051 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK-------LCLVNELDVSLL 1103
VV+ + +K+WN + + + ++ L + + +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 1104 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGE 1161
L S + + W D+K L+ +QGH+ V V +
Sbjct: 324 LSGSKDRGVLFW---DKKSGNPLLM----LQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 1162 VSSIMLWDLEK 1172
+W +K
Sbjct: 377 DCKARIWKYKK 387
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 5e-11
Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256
+G D S +L+DVR + H + I F P + + S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDIN---AICFFP--NGNAFATGSDDA 248
Query: 1257 DIQF-LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1314
+ + + + D +++++ + ++ +G V+ ++ G +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 1315 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352
H V+CL + +A GS D+ + I
Sbjct: 309 AGHD--------NRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 1142 CSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200
+V+ L+ SG +S LWD+ + S I+A+ +G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFP-NGNA 240
Query: 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1260
A G D + RL+D+R T H + + +SF +++ +
Sbjct: 241 FATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNV 296
Query: 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305
D A + H +S L V +A+GS +K+++
Sbjct: 297 WDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.0 bits (97), Expect = 4e-04
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 17/121 (14%)
Query: 1052 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
F P ++ ++++ D +HD GI+ + LLL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
Query: 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168
+ N +W D + + GH V C + + S + +W
Sbjct: 291 DFNCNVW---DALKADRAGV----LAGHDNRVSC----LGVTDDGMAVATGSWDSFLKIW 339
Query: 1169 D 1169
+
Sbjct: 340 N 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 0.001
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1035 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1094
G + +++A ++ +W+ + H D +S L +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVSCLGV 320
Query: 1095 VNELDVSLLLVASCNGNIRIW 1115
+ D + S + ++IW
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-10
Identities = 42/323 (13%), Positives = 97/323 (30%), Gaps = 37/323 (11%)
Query: 1046 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--------------------FP 1085
LQ +V+ ++ +K+W+ L + H
Sbjct: 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 79
Query: 1086 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNV 1145
++ C +D V + Q +
Sbjct: 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139
Query: 1146 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1205
V Q + + + +WD E E + ++ Q G + +G
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-----QFDGIHVVSGS 194
Query: 1206 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265
+D S+R++DV T + + T G+ + + +VS + ++ DI+
Sbjct: 195 LDTSIRVWDVETGNCI----HTLTGHQSLTSGMELKDNI----LVSGNADSTVKIWDIKT 246
Query: 1266 HKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQ 1324
+ ++ + + + + + S +K++ L+ GE + +
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---SGG 303
Query: 1325 KIGSVNCLTFHPYQVLLAAGSAD 1347
G V + +++ A GS +
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRN 326
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 43/266 (16%)
Query: 1123 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM------ 1176
K + TA ++ + H + V + + + + +WD +
Sbjct: 1 KVFIATA-NAGKAHDADIFS--VSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53
Query: 1177 ----VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1232
V+ + A+ +A G + Y + D +
Sbjct: 54 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113
Query: 1233 ER------VVGISFQPGLDPAK---IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283
+ + + D +V+ G D ++ + L
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 1284 AVHRHAP----------------IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIG 1327
+P +IA+G +++ L + S +
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI-NNSN 232
Query: 1328 SVNCLTFHPYQVLLAAGSADACVSIH 1353
S+ + F P LLA
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCI 258
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 4e-06
Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 33/384 (8%)
Query: 354 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 413
+ QR D +N++L + S S + + W
Sbjct: 68 DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPE 127
Query: 414 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 473
++ + + + + + + ++ + + + S
Sbjct: 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 187
Query: 474 CHRFRALVLLGRFLDMGPWAVDLALSVGIF-PYVLKLLQTTTPELRQILVFIWTKILALD 532
+ A L L+ D V + Q +R + KI++L
Sbjct: 188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247
Query: 533 KSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 592
+ A I + S E + + D EA
Sbjct: 248 YQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 305
Query: 593 LKHLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA----------- 639
+H A P+ Q L +D
Sbjct: 306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 365
Query: 640 ---IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 696
+ P R +AV + G +L E + + I + +
Sbjct: 366 VLPFIKEHIKNPDWRYRDAAVMAFGCIL--------------EGPEPSQLKPLVIQAMPT 411
Query: 697 LLTVVSDGSPLVRAEVAVALARFA 720
L+ ++ D S +VR A + R
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC 435
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 40/286 (13%), Positives = 76/286 (26%), Gaps = 46/286 (16%)
Query: 1049 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD------FPDKGISKLCLVNELDVSL 1102
LQ +V+ + IKIW+ H D+ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 1103 LLVASCNGNIRIWKDYDQKDKQKL-----------------VTAFSSIQGHKPGVRCSNV 1145
+ N I + + + + I + V
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 1146 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1205
V Y+ ++ +I +W+ + + + Q + +G
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-----LQYRDRLVVSGS 195
Query: 1206 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265
D ++RL+D+ L + D +IVS + G I+ D+
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEE--------LVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 1266 HKDAYL--------TIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303
D T+ H G + L I S S I +
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 24/154 (15%)
Query: 1065 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124
IK+WN + + + H + L++ S + IR+W
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRG-------IACLQYRDRLVVSGSSDNTIRLWD-------- 204
Query: 1125 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1184
+ +V + + + + I +WDL P +
Sbjct: 205 -----IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 1185 DCSI----SALTASQVHGGQLAAGFVDGSVRLYD 1214
++ + Q Q+ + D ++ ++D
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 4e-05
Identities = 28/332 (8%), Positives = 66/332 (19%), Gaps = 49/332 (14%)
Query: 1052 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1108
++ + + + + DT+ S D + D V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNN 59
Query: 1109 NGN-IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167
+ I D D S + +YA+ + +
Sbjct: 60 HYGDIYGI-DLDTCKNTFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLN 114
Query: 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1227
+ + ++ + + D + T
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK 174
Query: 1228 HTQQV---ERVVGISF------------------------QPGLDPAKIVSASQAGDIQF 1260
+T + + D +A
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234
Query: 1261 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1320
+D++ K P G +L K + + + H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH-- 292
Query: 1321 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1352
+ C+ F L G +++
Sbjct: 293 -------TYYCVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 1228 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVH 1286
H+ VE + ++ D +I ++ + +K + + H G ++ +
Sbjct: 3 HSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 1287 RHAPIIASGSAKQLIKVFS 1305
+ I + + V++
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 0.001
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1281 SALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337
S A ++ IA + ++ G Q+ ++ H+ G V + + P
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--------GQVTGVDWAPD 62
Query: 1338 QVLLAAGSADACVSIHS 1354
+ D + +
Sbjct: 63 SNRIVTCGTDRNAYVWT 79
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 10/78 (12%)
Query: 1276 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF 1334
H + +L S L+ + G + + SV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---------SSVLSCDI 314
Query: 1335 HPYQVLLAAGSADACVSI 1352
+ GS D ++
Sbjct: 315 SVDDKYIVTGSGDKKATV 332
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 0.001
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1197 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1256
G ++A+ D ++++++V T + + T+ ++ +GI + +VS S G
Sbjct: 249 DGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIW----TKQALVSISANG 303
Query: 1257 DIQFLDI 1263
I F++
Sbjct: 304 FINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.5 bits (90), Expect = 0.002
Identities = 32/306 (10%), Positives = 72/306 (23%), Gaps = 28/306 (9%)
Query: 1052 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1107
+P I + + T + H
Sbjct: 25 NTPAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTT-----VAKTSPSGYYCASGD 77
Query: 1108 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167
+GN+RIW ++I V+ + + ++ + + L
Sbjct: 78 VHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
Query: 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1227
+D + + + + V +
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 1228 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR 1287
H+ + + G D ++ G + + + G
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL----TWSP 248
Query: 1288 HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346
IAS SA + IK++++ + TI L + L + SA
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-------EDQQLGIIWTKQALVSISA 301
Query: 1347 DACVSI 1352
+ ++
Sbjct: 302 NGFINF 307
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 1149 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1208
S G ++I +WD+ + + + G++ + +DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 1209 SVRLYDV 1215
++ Y++
Sbjct: 319 TLNFYEL 325
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.004
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 504 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRA 563
P ++ L + + + I + D+S + + + GG + L S +
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQ 62
Query: 564 MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 623
AA L +V + I + L+ + + Q L L L E
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK---QLTGLLWNLSSTDE 119
Query: 624 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDD 683
E A + +P S + R+ D
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 684 DEKIRAEISIIRSLL 698
I + + +
Sbjct: 180 MRNYSGLIDSLMAYV 194
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 22/279 (7%)
Query: 1085 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSN 1144
P IS + ++ SLLL+ S +G++ ++K Q L+ + +K + C
Sbjct: 10 PKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLC-- 61
Query: 1145 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1204
++ + G + ++ ++++ ++ + +L A
Sbjct: 62 --CNFIDNTDLQIYVGT-VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 1205 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1264
DG + + D R V + + +V F + ++++ +Q+ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 1265 NHKDAYLTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSF 1321
+D TI + + A S + V + + +F
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 1322 MAQK--------IGSVNCLTFHPYQVLLAAGSADACVSI 1352
+ VN + F P L +D +S
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1354 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.63 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.53 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.52 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.37 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.24 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.13 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.1 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.91 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.86 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.85 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.79 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.65 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.6 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.57 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.38 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.28 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.22 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.13 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.08 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.06 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.9 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.77 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.69 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.67 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.67 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.64 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.57 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.5 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.34 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.23 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.21 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.06 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.51 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.22 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.1 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.23 | |
| d1nw9b_ | 277 | Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.95 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 93.55 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.69 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.63 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 92.63 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 92.48 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.03 | |
| g1sc3.1 | 261 | Interleukin-1beta converting enzyme (a cysteine pr | 90.87 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 89.45 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 88.46 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 87.43 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.78 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.03 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.72 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 82.83 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 82.12 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=269.48 Aligned_cols=283 Identities=15% Similarity=0.230 Sum_probs=238.2
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC
Q ss_conf 8589999837999958999999997899499998799936-----78962799999986999998608998999996898
Q 000681 1036 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1110 (1354)
Q Consensus 1036 Wd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~-----l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG 1110 (1354)
........|++++|+|++++|++|+ ||.|+|||+.++.. .....+|. +.|++++| ++++.+|++|+.||
T Consensus 46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~---~~I~~v~~--s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD---NYIRSCKL--LPDGCTLIVGGEAS 119 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT---SBEEEEEE--CTTSSEEEEEESSS
T ss_pred EECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCC
T ss_conf 9879999289999989999999997-998899773677633116876404889---96899998--67998898861233
Q ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 09999866777850488401024589997112503799935999499997898199998888851345424999998279
Q 000681 1111 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~Vts 1190 (1354)
.|++|++... ..+.. ..+..|...+.. +.|++++..+++++.|+.|++||+.+++ +......+... |++
T Consensus 120 ~i~iwd~~~~--~~~~~---~~~~~~~~~v~~----~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~-v~~ 188 (337)
T d1gxra_ 120 TLSIWDLAAP--TPRIK---AELTSSAPACYA----LAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASC 188 (337)
T ss_dssp EEEEEECCCC----EEE---EEEECSSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEE
T ss_pred CCCCCCCCCC--CCCCC---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCC
T ss_conf 2111111111--11111---111111111111----1111111111111111111111111111-11111111111-110
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCE
Q ss_conf 99974999999999889909999877997226741678878888599999229999999999779929999678997217
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1191 I~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i 1270 (1354)
+ .+++++..+++++.||.|++||+++++ ..... .|...|.+++|+|+ +..+++|+.||.|++||++.. ..
T Consensus 189 l-~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~----~~~~~i~~l~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~- 258 (337)
T d1gxra_ 189 I-DISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH----DFTSQIFSLGYCPT--GEWLAVGMESSNVEVLHVNKP-DK- 258 (337)
T ss_dssp E-EECTTSSEEEEEETTSEEEEEETTTTE-EEEEE----ECSSCEEEEEECTT--SSEEEEEETTSCEEEEETTSS-CE-
T ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCC----CCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCC-CC-
T ss_conf 1-234443211223566553211111100-00024----66661579997153--030000002564211111111-10-
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCE
Q ss_conf 999157998589999279998999968991999957-9934789825578644456787499999449979999988980
Q 000681 1271 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1349 (1354)
Q Consensus 1271 ~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~ 1349 (1354)
.....|...|++++|+|++++|++++.|+.|++|+. +++.+..+. |. +.|.+++|+|++++|++|+.||.
T Consensus 259 ~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~-------~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ES-------SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS-------SCEEEEEECTTSCEEEEEETTSC
T ss_pred CCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC--CC-------CCEEEEEEECCCCEEEEEECCCE
T ss_conf 0001245654169998999999999489969999899997999926--99-------98799999279999999908996
Q ss_pred EEECC
Q ss_conf 99919
Q 000681 1350 VSIHS 1354 (1354)
Q Consensus 1350 I~IWd 1354 (1354)
|+||+
T Consensus 330 I~vWd 334 (337)
T d1gxra_ 330 ATVYE 334 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-35 Score=265.75 Aligned_cols=288 Identities=20% Similarity=0.292 Sum_probs=239.1
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---------------CCCCEEEEEEEEECCCCEEE
Q ss_conf 999837999958999999997899499998799936789627999---------------99986999998608998999
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF---------------PDKGISKLCLVNELDVSLLL 1104 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~---------------~~~~ItsL~f~~s~d~~~Lv 1104 (1354)
....|++++|+|+|++|++|+ |+.|+||+..+++.+..+..+.. ....|++++| ++++.+|+
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~~l~ 137 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLA 137 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSEEE
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE--CCCCCCCE
T ss_conf 999689999999999999994-994899981364057663166544324432111014677898899998--89998012
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 99689809999866777850488401024589997112503799935999499997898199998888851345424999
Q 000681 1105 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1184 (1354)
Q Consensus 1105 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~ 1184 (1354)
+|+.||.|++|+... ++.. ....+|...+.+ +.|++++..+++++.++.+++||.++.. .......+
T Consensus 138 s~~~dg~v~i~~~~~--~~~~-----~~~~~h~~~v~~----~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~- 204 (388)
T d1erja_ 138 TGAEDRLIRIWDIEN--RKIV-----MILQGHEQDIYS----LDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE- 204 (388)
T ss_dssp EEETTSCEEEEETTT--TEEE-----EEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECS-
T ss_pred ECCCCCCCCCCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCCC-
T ss_conf 134441111211111--1111-----111111111111----0111111111122210156541011111-10000124-
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 99827999974999999999889909999877997226741---678878888599999229999999999779929999
Q 000681 1185 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST---RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1261 (1354)
Q Consensus 1185 ~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~---~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IW 1261 (1354)
.. ..++.+++.+++++++|+.||.|++||.+++....... ....+|...|.++.|+|+ +.+|++|+.||.|++|
T Consensus 205 ~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~d~~i~iw 281 (388)
T d1erja_ 205 DG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--GQSVVSGSLDRSVKLW 281 (388)
T ss_dssp SC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred CC-CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCC--CCEEEEEECCCCEEEE
T ss_conf 54-42112368878758997389819996345573000102443334577898789999799--9999999789928987
Q ss_pred ECCCCC-----------CCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCE
Q ss_conf 678997-----------21799915799858999927999899996899199995-799347898255786444567874
Q 000681 1262 DIRNHK-----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1262 Di~~~~-----------~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
|++... ........|...|++++|+|++.+|++|+.||.|++|| .+++.+.++++ |. +.|
T Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~-------~~V 353 (388)
T d1erja_ 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HR-------NSV 353 (388)
T ss_dssp EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CS-------SCE
T ss_pred ECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CC-------CCE
T ss_conf 5157764321013444200110124553278999889999999996989799999999969999968-89-------978
Q ss_pred EEEEE------ECCCCEEEEEECCCEEEECC
Q ss_conf 99999------44997999998898099919
Q 000681 1330 NCLTF------HPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1330 ~sLaf------spdg~~Lasgs~Dg~I~IWd 1354 (1354)
.++++ +|++.+|++|+.||.|+||+
T Consensus 354 ~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp EEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 9999846742589999999991899799976
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-34 Score=261.00 Aligned_cols=281 Identities=19% Similarity=0.346 Sum_probs=249.1
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98379999589999999978994999987999367896279999998699999860899899999689809999866777
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~ 1121 (1354)
..|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|. ..|.++.| ++++.++++++.++.+.+|+...
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-- 90 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISF--DHSGKLLASCSADMTIKLWDFQG-- 90 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCCCEEETTS--
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--ECCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 876899993898999999389929999899997999995788---86777763--01111011111111101110011--
Q ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf 85048840102458999711250379993599949999789819999888885134542499999827999974999999
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1201 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~L 1201 (1354)
.... ..+.+|...+.+ +.|++++..+++++.|+.+++||++++. .+..+..+... +.++ .+++++.++
T Consensus 91 ~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~l 158 (317)
T d1vyhc1 91 FECI-----RTMHGHDHNVSS----VSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREW-VRMV-RPNQDGTLI 158 (317)
T ss_dssp SCEE-----ECCCCCSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EECTTSSEE
T ss_pred CCCC-----CCCCCCCCCCEE----EECCCCCCEEEEECCCCCEEEEECCCCE-EEEEECCCCCC-CEEE-ECCCCCCEE
T ss_conf 1111-----110000000000----0016998557765267523575114430-34687167776-3000-016679999
Q ss_pred EEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC------------------CCCCEEEEEECCCCEEEEEC
Q ss_conf 999889909999877997226741678878888599999229------------------99999999977992999967
Q 000681 1202 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------------------LDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1202 vsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~------------------~~g~~Lvsgs~DG~I~IWDi 1263 (1354)
++++.||.|++|+.+.+. ....+. +|...+.++.++++ ..+..+++++.||.|++||.
T Consensus 159 ~~~~~d~~v~~~~~~~~~-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 234 (317)
T d1vyhc1 159 ASCSNDQTVRVWVVATKE-CKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234 (317)
T ss_dssp EEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EEEECCCEEEEEEECCCE-EEEEEE---CCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEEC
T ss_conf 999279829997512540-347882---4778733799863256411103456303430258861475169978999888
Q ss_pred CCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 8997217999157998589999279998999968991999957-993478982557864445678749999944997999
Q 000681 1264 RNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1342 (1354)
Q Consensus 1264 ~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~La 1342 (1354)
+++ .++.++.+|...|.+++|+|++.+|++|+.||.|++||+ +++.+.++.. |. +.|++++|+|++.+|+
T Consensus 235 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~-------~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 235 STG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HE-------HFVTSLDFHKTAPYVV 305 (317)
T ss_dssp TTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CS-------SCEEEEEECSSSSCEE
T ss_pred CCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEECCCCCEEE
T ss_conf 999-68899968899879999879999999997989499999999919999928-99-------9889999949999999
Q ss_pred EEECCCEEEECC
Q ss_conf 998898099919
Q 000681 1343 AGSADACVSIHS 1354 (1354)
Q Consensus 1343 sgs~Dg~I~IWd 1354 (1354)
+|+.||.|+||+
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEECCCEEEEEC
T ss_conf 992899499829
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-33 Score=257.43 Aligned_cols=281 Identities=15% Similarity=0.142 Sum_probs=233.5
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98379999589999999978994999987999367896279999998699999860899899999689809999866777
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~ 1121 (1354)
..+..++++|+++.|+.+. ++.|.+|++++......+.+|. ..|++++| ++++++|++|+.||.|++|++....
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~---~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCC---CCEEEEEE--ECCCCEEECCCCCCEEEEEEEECCC
T ss_conf 8759999969989999996-9999999999996617974788---88899999--4899967225567367466310111
Q ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC--CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 8504884010245899971125037999359994999978--98199998888851345424999998279999749999
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~--Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~ 1199 (1354)
. ... ..+.+|...|.+ ++|++++..+++++. ++.+++|+..+++ ....+..|.+. |+++ .+++++.
T Consensus 92 ~--~~~---~~~~~~~~~v~~----v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~-v~~v-~~~~~~~ 159 (311)
T d1nr0a1 92 H--ILK---TTIPVFSGPVKD----ISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARA-MNSV-DFKPSRP 159 (311)
T ss_dssp C--CEE---EEEECSSSCEEE----EEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSC-EEEE-EECSSSS
T ss_pred C--CCC---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-CCCCCCE
T ss_conf 1--000---013433575433----233311100011112211111111111111-11111111111-1111-1121110
Q ss_pred -EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE----
Q ss_conf -999998899099998779972267416788788885999992299999999997799299996789972179991----
Q 000681 1200 -QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID---- 1274 (1354)
Q Consensus 1200 -~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~---- 1274 (1354)
.+++|+.||.|++||.++.+ ...... +|...|.++.|+|+ +.++++++.||.|++||.+.+ .....+.
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~-~~~~~~---~~~~~i~~v~~~p~--~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~ 232 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFK-FKSTFG---EHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSL 232 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBE-EEEEEC---CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC-CEEEECBCTTS
T ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 120001122111111111111-111111---11111111234764--221211111111100012446-41122211111
Q ss_pred ---CCCCCEEEEEECCCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf ---5799858999927999899996899199995-799347898255786444567874999994499799999889809
Q 000681 1275 ---AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1350 (1354)
Q Consensus 1275 ---~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I 1350 (1354)
+|.+.|++++|+|++.+|++|+.|+.|+||| .+++.+.++.. |.. ....+.++ .+++..|++++.||.|
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~----~~~~~~~~--~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTR----IEDQQLGI--IWTKQALVSISANGFI 305 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSS----GGGCEEEE--EECSSCEEEEETTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCC----CCCEEEEE--EECCCEEEEEECCCEE
T ss_conf 1100246532102478899999993799699999999969999979-998----63329999--9519999999899979
Q ss_pred EECC
Q ss_conf 9919
Q 000681 1351 SIHS 1354 (1354)
Q Consensus 1351 ~IWd 1354 (1354)
++||
T Consensus 306 ~~wd 309 (311)
T d1nr0a1 306 NFVN 309 (311)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9995
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.9e-32 Score=248.80 Aligned_cols=283 Identities=15% Similarity=0.253 Sum_probs=238.4
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
...|++++|+|++++|++|+.||.|+|||..+++.+..+..|. ..|++++| ++++.++++|+.|+.+++|+....
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~ 129 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAY--APSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC---SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CCEEEEEE--ECCCEEEEEECCCCEEECCCCCCC
T ss_conf 8988899998999999999789955563102102579972465---33775676--012114431013320101332222
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 78504884010245899971125037999359994999978981999988888513454249999982799997499999
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~ 1200 (1354)
....... ..+.+|...... .. ...+..+.....+.....++..... .......+... +... ...+.+..
T Consensus 130 ~~~~~~~---~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~ 198 (340)
T d1tbga_ 130 EGNVRVS---RELAGHTGYLSC----CR-FLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGD-VMSL-SLAPDTRL 198 (340)
T ss_dssp CSCCCEE---EEECCCSSCEEE----EE-EEETTEEEEEETTTEEEEEETTTTE-EEEEEECCSSC-EEEE-EECTTSSE
T ss_pred CCCCCCC---EECCCCCCCCCC----CC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEE-EEEE-CCCCCCCE
T ss_conf 1222111---001354211011----11-1111111111244543200123221-11112331015-7630-01244212
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE--CCCC
Q ss_conf 99998899099998779972267416788788885999992299999999997799299996789972179991--5799
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRG 1278 (1354)
Q Consensus 1201 Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~--~h~~ 1278 (1354)
+++|+.||.|++||+++++ ....+. +|...|++++|+|+ +.+|++|+.||.|++||++.. .....+. .+..
T Consensus 199 ~~~~~~d~~v~i~d~~~~~-~~~~~~---~h~~~i~~v~~~p~--~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~~~~ 271 (340)
T d1tbga_ 199 FVSGACDASAKLWDVREGM-CRQTFT---GHESDINAICFFPN--GNAFATGSDDATCRLFDLRAD-QELMTYSHDNIIC 271 (340)
T ss_dssp EEEEETTTEEEEEETTTTE-EEEEEC---CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-EEEEEECCTTCCS
T ss_pred EEEEECCCEEEEEECCCCC-EEEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEEEEEECCC-CCCCCCCCCCCCC
T ss_conf 6876057369999999994-889995---78898589999799--899999969996999752122-1111111224457
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 858999927999899996899199995-7993478982557864445678749999944997999998898099919
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1279 ~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
.+++++|+|++.+|++|+.||.|++|| .+++.+..+.+ |. +.|++++|+|++.+|++|+.||.|+|||
T Consensus 272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~-------~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HD-------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CS-------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 458999989999999997979899999999939899848-99-------9789999908999999990699799859
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.5e-33 Score=254.22 Aligned_cols=292 Identities=14% Similarity=0.178 Sum_probs=228.8
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 983799995899999999789949999879993--678962799999986999998608998999996898099998667
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~--~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~ 1119 (1354)
.+|+|++|+|++.+|++|+.|+.|+||+..+++ .+..+.+|. +.|++++| ++++++|++++.|+.|++|++.+
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEEECC
T ss_conf 88389999899999999948898999988899789999955889---98889999--79999999997999399986203
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCCCEEEEEEECC
Q ss_conf 7785048840102458999711250379993599949999789819999888885134---5424999998279999749
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV---NPIPSSSDCSISALTASQV 1196 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i---~~l~~~~~~~VtsI~~~s~ 1196 (1354)
...... ..+.+|...+.+ +.|+|++..+++++.|+.|++|+..... .. ......+...|+++ .++|
T Consensus 83 ~~~~~~-----~~~~~~~~~v~~----i~~~p~~~~l~~~s~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~v~~v-~~~p 151 (371)
T d1k8kc_ 83 RTWKPT-----LVILRINRAARC----VRWAPNEKKFAVGSGSRVISICYFEQEN-DWWVCKHIKKPIRSTVLSL-DWHP 151 (371)
T ss_dssp TEEEEE-----EECCCCSSCEEE----EEECTTSSEEEEEETTSSEEEEEEETTT-TEEEEEEECTTCCSCEEEE-EECT
T ss_pred CCCCCC-----CCCCCCCCCCCC----CCCCCCCCCCEEECCCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCC-CCCC
T ss_conf 321100-----122322110001----1111112110000025763025442033-4331110010111222111-1111
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEE--------------EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 99999999889909999877997226--------------7416788788885999992299999999997799299996
Q 000681 1197 HGGQLAAGFVDGSVRLYDVRTPDMLV--------------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1197 ~g~~Lvsgs~DGsIrIwDlrs~~~~~--------------~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWD 1262 (1354)
++.++++|+.||.|++||........ .......+|...|.+++|+|+ +..+++++.||.|++||
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~d~~i~iwd 229 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN--GSRVAWVSHDSTVCLAD 229 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS--SSEEEEEETTTEEEEEE
T ss_pred CCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC--CCCCCCCCCCCCCEEEE
T ss_conf 1111000134767999840157643100122111111110112440476674789875123--32100001478605886
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE--CCCCEEEEEECC-----------------------
Q ss_conf 7899721799915799858999927999899996899199995--799347898255-----------------------
Q 000681 1263 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYH----------------------- 1317 (1354)
Q Consensus 1263 i~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd--~~g~~l~~i~~~----------------------- 1317 (1354)
+..+ ..+..+..|..+|.+++|++++.++++|+ |+.+++|. .....+. +...
T Consensus 230 ~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (371)
T d1k8kc_ 230 ADKK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLDK 306 (371)
T ss_dssp GGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE-ECCCCCCC--------CHHHHHHHCCC
T ss_pred EECC-CCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEE-EEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 4101-21000001466520365469997999981-99267877608986288-720206765421246220016850652
Q ss_pred ----------CCCCCCCCCCCEEEEEEECCC----CEEEEEECCCEEEECC
Q ss_conf ----------786444567874999994499----7999998898099919
Q 000681 1318 ----------HPSFMAQKIGSVNCLTFHPYQ----VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1318 ----------h~~fl~~~~~~V~sLafspdg----~~Lasgs~Dg~I~IWd 1354 (1354)
.......|.+.|+++++++.+ ..+++++.||.|+||+
T Consensus 307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 058712455661412555698899999489986567999991899399996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-31 Score=239.83 Aligned_cols=265 Identities=17% Similarity=0.277 Sum_probs=227.0
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCC---------------CCEEEEEECCCCCEEEEEECCCCEEEEECCCC--C
Q ss_conf 210002889862798307993999858999---------------98379999589999999978994999987999--3
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE---------------KGTKTALLQPFSPIVVAADENERIKIWNYEED--T 1074 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~---------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg--~ 1074 (1354)
+....+++++..+++++ ++.|++||...+ ..|.+++|+|++++|++|+.||.|++||+... +
T Consensus 54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~ 132 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E
T ss_pred EEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 89999989999999997-99889977367763311687640488996899998679988988612332111111111111
Q ss_pred EEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 67896279999998699999860899899999689809999866777850488401024589997112503799935999
Q 000681 1075 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1154 (1354)
Q Consensus 1075 ~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~ 1154 (1354)
....+..|. ..+..+.| ++++.++++++.|+.|++|++.+ ++.. ....+|...+.+ ++|++++.
T Consensus 133 ~~~~~~~~~---~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~--~~~~-----~~~~~~~~~v~~----l~~s~~~~ 196 (337)
T d1gxra_ 133 IKAELTSSA---PACYALAI--SPDSKVCFSCCSDGNIAVWDLHN--QTLV-----RQFQGHTDGASC----IDISNDGT 196 (337)
T ss_dssp EEEEEECSS---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT--TEEE-----EEECCCSSCEEE----EEECTTSS
T ss_pred CCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCC
T ss_conf 111111111---11111111--11111111111111111111111--1111-----111111111110----12344432
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 49999789819999888885134542499999827999974999999999889909999877997226741678878888
Q 000681 1155 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1234 (1354)
Q Consensus 1155 ~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~ 1234 (1354)
.+++++.|+.|++||+++++ .+..+.. ...|+++ .++++++.+++|+.||.+++||++..+. ... ..|...
T Consensus 197 ~~~~~~~d~~v~i~d~~~~~-~~~~~~~--~~~i~~l-~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~----~~~~~~ 267 (337)
T d1gxra_ 197 KLWTGGLDNTVRSWDLREGR-QLQQHDF--TSQIFSL-GYCPTGEWLAVGMESSNVEVLHVNKPDK-YQL----HLHESC 267 (337)
T ss_dssp EEEEEETTSEEEEEETTTTE-EEEEEEC--SSCEEEE-EECTTSSEEEEEETTSCEEEEETTSSCE-EEE----CCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCE-EECCCCC--CCCEEEE-EECCCCCCCCEECCCCCCCCCCCCCCCC-CCC----CCCCCC
T ss_conf 11223566553211111100-0002466--6615799-9715303000000256421111111110-000----124565
Q ss_pred EEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 599999229999999999779929999678997217999157998589999279998999968991999957
Q 000681 1235 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1235 I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
|.+++|+|+ +++|++|+.||.|++||..++ ..+..+. |.+.|++++|+|++++|++|+.|+.|+||++
T Consensus 268 i~~v~~s~~--g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 268 VLSLKFAYC--GKWFVSTGKDNLLNAWRTPYG-ASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECTT--SSEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEECC-CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 416999899--999999948996999989999-7999926-9998799999279999999908996999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-30 Score=235.08 Aligned_cols=274 Identities=19% Similarity=0.274 Sum_probs=222.4
Q ss_pred HHHEEECCCCCCEEEEEECCCCEEEEECCCC----------------------------CCEEEEEECCCCCEEEEEECC
Q ss_conf 3210002889862798307993999858999----------------------------983799995899999999789
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------------------------KGTKTALLQPFSPIVVAADEN 1062 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------------------------~~I~sL~fspdg~~Latgs~D 1062 (1354)
.+....+++++..++++. ++.|++|+...+ ..|++++|+|++++|++|+.|
T Consensus 64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d 142 (388)
T d1erja_ 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142 (388)
T ss_dssp CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCC
T ss_conf 689999999999999994-9948999813640576631665443244321110146778988999988999801213444
Q ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 94999987999367896279999998699999860899899999689809999866777850488401024589997112
Q 000681 1063 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1142 (1354)
Q Consensus 1063 g~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1142 (1354)
|.|++|+...++.+..+.+|. ..|.++.+ .+++..+++++.+|.+++|+..+ ...... ...+.. ..+
T Consensus 143 g~v~i~~~~~~~~~~~~~~h~---~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~-----~~~~~~-~~~ 209 (388)
T d1erja_ 143 RLIRIWDIENRKIVMILQGHE---QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRT--GQCSLT-----LSIEDG-VTT 209 (388)
T ss_dssp SCEEEEETTTTEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTT--TEEEEE-----EECSSC-EEE
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCEEEEEEECCC--CCCCCC-----CCCCCC-CCC
T ss_conf 111121111111111111111---11111011--11111111222101565410111--111000-----012454-421
Q ss_pred CEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCEEEEEECC------CCCCCEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 503799935-9994999978981999988888513454249------999982799997499999999988990999987
Q 000681 1143 SNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPS------SSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1215 (1354)
Q Consensus 1143 i~~~i~~sp-~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~------~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDl 1215 (1354)
+.+.+ ++..+++++.||.|++||..++. ....+.. .+...|+++ .+++++..+++|+.||.|++||+
T Consensus 210 ----~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l-~~s~~~~~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 210 ----VAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNL 283 (388)
T ss_dssp ----EEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEE-EECTTSSEEEEEETTSEEEEEEC
T ss_pred ----CCCCCCCCCEEEEECCCCEEEEEECCCCC-CCEEECCCCCCCCCCCCCEEEE-EECCCCCEEEEEECCCCEEEEEC
T ss_conf ----12368878758997389819996345573-0001024433345778987899-99799999999978992898751
Q ss_pred CCCCEEEEE--------ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEE--
Q ss_conf 799722674--------1678878888599999229999999999779929999678997217999157998589999--
Q 000681 1216 RTPDMLVCS--------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV-- 1285 (1354)
Q Consensus 1216 rs~~~~~~~--------~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLaf-- 1285 (1354)
+........ ......|...|.+++|+|+ +.+|++|+.||.|++||++++ +++.++.+|.+.|+++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~~V~~~~~~~ 360 (388)
T d1erja_ 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVAN 360 (388)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGG--GCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECS
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEEEECCCCCEEEEEEEC
T ss_conf 577643210134442001101245532789998899--999999969897999999999-69999968899789999846
Q ss_pred ----CCCCCEEEEEECCCCEEEEECC
Q ss_conf ----2799989999689919999579
Q 000681 1286 ----HRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1286 ----spdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+|++.+|++|+.||.|+||+++
T Consensus 361 ~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 361 GSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 74258999999999189979997621
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.6e-30 Score=231.42 Aligned_cols=268 Identities=12% Similarity=0.161 Sum_probs=215.5
Q ss_pred ECCCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCC
Q ss_conf 02889862798307993999858999----------9837999958999999997899499998799936--78962799
Q 000681 1016 QRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHD 1083 (1354)
Q Consensus 1016 q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~--l~~l~~h~ 1083 (1354)
..++++..++.+ .++.+.+|+..+. ..|++++|+|++++|++|+.||.|++|++.+++. ...+..|.
T Consensus 24 a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (311)
T d1nr0a1 24 GNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 102 (311)
T ss_dssp EECTTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred EECCCCCEEEEE-ECCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 996998999999-6999999999999661797478888899999489996722556736746631011110000134335
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEECC--CEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCE-EEEEE
Q ss_conf 99998699999860899899999689--8099998667778504884010245899971125037999359994-99997
Q 000681 1084 FPDKGISKLCLVNELDVSLLLVASCN--GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASG 1160 (1354)
Q Consensus 1084 ~~~~~ItsL~f~~s~d~~~Lvtgs~D--G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~-Llsag 1160 (1354)
..|.+++| ++++.++++++.+ +.++||+..+ ++.. ..+.+|...|.+ ++|++++.. +++++
T Consensus 103 ---~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~--~~~~-----~~l~~h~~~v~~----v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 103 ---GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDT--GTSN-----GNLTGQARAMNS----VDFKPSRPFRIISGS 166 (311)
T ss_dssp ---SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTT--CCBC-----BCCCCCSSCEEE----EEECSSSSCEEEEEE
T ss_pred ---CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCEEEECCCC
T ss_conf ---75433233--3111000111122111111111111--1111-----111111111111----111211101200011
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCCCCCCEE
Q ss_conf 898199998888851345424999998279999749999999998899099998779972267416----7887888859
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR----PHTQQVERVV 1236 (1354)
Q Consensus 1161 ~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~----~~~~h~~~I~ 1236 (1354)
.|+.|++||+++.+ ....+..|... |+++ .++++++++++++.||.|++||.+.+.. ...+. ...+|...|+
T Consensus 167 ~d~~i~i~d~~~~~-~~~~~~~~~~~-i~~v-~~~p~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~ 242 (311)
T d1nr0a1 167 DDNTVAIFEGPPFK-FKSTFGEHTKF-VHSV-RYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVF 242 (311)
T ss_dssp TTSCEEEEETTTBE-EEEEECCCSSC-EEEE-EECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEE
T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 22111111111111-11111111111-1112-3476422121111111110001244641-1222111111100246532
Q ss_pred EEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCC-CEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 999922999999999977992999967899721799915799-85899992799989999689919999579
Q 000681 1237 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1237 si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~-~ItsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
+++|+|+ +.+|++|+.||.|++||++++ +++.++..|.. ....+.+.+++..+++++.||.|++||.+
T Consensus 243 ~~~~s~~--~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 243 GLTWSPD--GTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEECTT--SSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCCCCC--CCEEEEEECCCEEEEEECCCC-CEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 1024788--999999937996999999999-69999979998633299999519999999899979999588
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-29 Score=227.81 Aligned_cols=294 Identities=13% Similarity=0.118 Sum_probs=224.2
Q ss_pred CCEEEEEECCCCCEEEEEECCCC-EEEEECCCC--CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 98379999589999999978994-999987999--367896279999998699999860899899999689809999866
Q 000681 1042 KGTKTALLQPFSPIVVAADENER-IKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~-I~IWd~~tg--~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~ 1118 (1354)
..++++.|+|+++.|++++.+.. |+.|+.... ..+..+.+|. ...|++++|.|..++.+|++|+.||+|+||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCC--CCCEEEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 984799998997999999699879999768888765028990789--998899998117999799999489977985405
Q ss_pred CCCCCCEEEE-EEECCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 7778504884-01024589997112503799935999499997--89819999888885134542499999827999974
Q 000681 1119 DQKDKQKLVT-AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1195 (1354)
Q Consensus 1119 ~~~~~~~lvs-~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag--~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s 1195 (1354)
.......+.. ....+..|...+.+ ++|++++..+++++ .++.+++|+..+++ ++..+.+|... |+++ .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~----v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~-v~~~-~~~ 168 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPISD----ISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQR-INAC-HLK 168 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEE----EEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSC-EEEE-EEC
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEE----EEECCCCCCCCEEECCCCCEEEEEEECCCC-CCEEEEECCCC-CCCC-CCC
T ss_conf 8862156510025411365673779----998999882201001244047888502331-10012001234-3211-112
Q ss_pred CCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 9999-999998899099998779972267416788788885999992299999999997799299996789972179991
Q 000681 1196 VHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1196 ~~g~-~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~ 1274 (1354)
+++. .+++++.||.+++||.+..+ .......+.+|...|.+++|+|+ .+.++++++.||.|++||++++ +.+.++.
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~v~~v~~~pd-~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~ 245 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSG-EFLKYIE 245 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTC-CEEEECC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCCCCCCEEEEECCC-CCEECCCCCCCCCEEEEEECCC-CCCCCCC
T ss_conf 3432068886211122111122110-00000001577775277630345-3100001123321013430012-2211111
Q ss_pred CCCCCEEEEEEC---CCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEE--EEEEECCCCEEEEEECCC
Q ss_conf 579985899992---79998999968991999957-993478982557864445678749--999944997999998898
Q 000681 1275 AHRGSLSALAVH---RHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN--CLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1275 ~h~~~ItsLafs---pdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~--sLafspdg~~Lasgs~Dg 1348 (1354)
+|...+.++.|+ +++.+|++++.|+.|+|||+ +++.+..+.. |.. ...+. ++.+.++ .+|++++.||
T Consensus 246 ~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-~~l~s~s~dg 318 (325)
T d1pgua1 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL-DKQ-----QLGNQQVGVVATGN-GRIISLSLDG 318 (325)
T ss_dssp BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CTT-----CGGGCEEEEEEEET-TEEEEEETTS
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE-CCC-----CCCCEEEEEEECCC-CEEEEEECCC
T ss_conf 1111111100000036899999995899399999999978899995-487-----40676999998899-9999997999
Q ss_pred EEEECC
Q ss_conf 099919
Q 000681 1349 CVSIHS 1354 (1354)
Q Consensus 1349 ~I~IWd 1354 (1354)
.|++|+
T Consensus 319 ~i~vwd 324 (325)
T d1pgua1 319 TLNFYE 324 (325)
T ss_dssp CEEEEE
T ss_pred EEEEEE
T ss_conf 999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-29 Score=224.04 Aligned_cols=268 Identities=18% Similarity=0.324 Sum_probs=234.5
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf 210002889862798307993999858999----------9837999958999999997899499998799936789627
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN 1081 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~ 1081 (1354)
+....+++++..+++++.|+.|++||..++ ..|.++.|++++.+++++..++.+.+|+....+....+..
T Consensus 20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 99 (317)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999938989999993899299998999979999957888677776301111011111111101110011111111000
Q ss_pred CCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 99999986999998608998999996898099998667778504884010245899971125037999359994999978
Q 000681 1082 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1161 (1354)
Q Consensus 1082 h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~ 1161 (1354)
|. ..+.++.| .+++..+++++.|+.+++|++.+ +... ..+.+|...+.+ +.|++++..+++++.
T Consensus 100 ~~---~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~--~~~~-----~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 163 (317)
T d1vyhc1 100 HD---HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQT--GYCV-----KTFTGHREWVRM----VRPNQDGTLIASCSN 163 (317)
T ss_dssp CS---SCEEEEEE--CSSSSEEEEEETTSEEEEEETTT--CCEE-----EEEECCSSCEEE----EEECTTSSEEEEEET
T ss_pred CC---CCCEEEEC--CCCCCEEEEECCCCCEEEEECCC--CEEE-----EEECCCCCCCEE----EECCCCCCEEEEEEC
T ss_conf 00---00000001--69985577652675235751144--3034-----687167776300----001667999999927
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC--------------------CCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 98199998888851345424999998279999749--------------------9999999988990999987799722
Q 000681 1162 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--------------------HGGQLAAGFVDGSVRLYDVRTPDML 1221 (1354)
Q Consensus 1162 Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~--------------------~g~~Lvsgs~DGsIrIwDlrs~~~~ 1221 (1354)
|+.|++|+..+.. ....+..+... +.++ .+.+ .+..+++++.||.|++||.++++ .
T Consensus 164 d~~v~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~ 239 (317)
T d1vyhc1 164 DQTVRVWVVATKE-CKAELREHRHV-VECI-SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-C 239 (317)
T ss_dssp TSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-E
T ss_pred CCEEEEEEECCCE-EEEEEECCCCC-CEEE-EEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-E
T ss_conf 9829997512540-34788247787-3379-98632564111034563034302588614751699789998889996-8
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 67416788788885999992299999999997799299996789972179991579985899992799989999689919
Q 000681 1222 VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1301 (1354)
Q Consensus 1222 ~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I 1301 (1354)
...+. +|...|.++.++|+ +.+|++|+.||.|++||++++ +++.++.+|.+.|++++|+|++++|++|+.||.|
T Consensus 240 ~~~~~---~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i 313 (317)
T d1vyhc1 240 LMTLV---GHDNWVRGVLFHSG--GKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313 (317)
T ss_dssp EEEEE---CCSSCEEEEEECSS--SSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred EEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 89996---88998799998799--999999979894999999999-1999992899988999994999999999289949
Q ss_pred EEEE
Q ss_conf 9995
Q 000681 1302 KVFS 1305 (1354)
Q Consensus 1302 ~Iwd 1305 (1354)
+|||
T Consensus 314 ~iWd 317 (317)
T d1vyhc1 314 KVWE 317 (317)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9829
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.7e-30 Score=229.10 Aligned_cols=281 Identities=13% Similarity=0.152 Sum_probs=210.2
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 9983799995899999999789949999879993678962-799999986999998608998999996898099998667
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~-~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~ 1119 (1354)
...|++++|+|++++|++|+.||.|++||+++++.+..+. .|. ..|+++.| ++++. +++++.|+.+++|+...
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~---~~v~~v~~--~~~g~-~~~~~~d~~v~~~~~~~ 85 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---TMITGIKT--TSKGD-LFTVSWDDHLKVVPAGG 85 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS---SCEEEEEE--CTTSC-EEEEETTTEEEEECSSS
T ss_pred CCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC---CCEEEEEE--ECCCE-EECCCCEEEEEEECCCC
T ss_conf 87828999979999999990899299999999968899837887---74899884--03311-21023102688731677
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 77850488401024589997112503799935999499997898199998888851345424999998279999749999
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~ 1199 (1354)
....... .....+...+.+ +.|++++..++ ++.++.+++|+..... . ... ...++++ .++++++
T Consensus 86 ~~~~~~~----~~~~~~~~~~~~----~~~s~~g~~~~-~~~~~~i~~~~~~~~~---~-~~~--~~~~~~~-~~s~~~~ 149 (299)
T d1nr0a2 86 SGVDSSK----AVANKLSSQPLG----LAVSADGDIAV-AACYKHIAIYSHGKLT---E-VPI--SYNSSCV-ALSNDKQ 149 (299)
T ss_dssp SSSCTTS----CCEEECSSCEEE----EEECTTSSCEE-EEESSEEEEEETTEEE---E-EEC--SSCEEEE-EECTTSC
T ss_pred CCCCCCC----CCCCCCCCCCCC----CCCCCCCCCCC-CCCCCCCCCCCCCCCC---C-CCC--CCCCCCC-CCCCCCC
T ss_conf 6201110----001111344321----00112211111-2222222111111111---1-011--1123322-1111111
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC--CEEEEECCC
Q ss_conf 999998899099998779972267416788788885999992299999999997799299996789972--179991579
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD--AYLTIDAHR 1277 (1354)
Q Consensus 1200 ~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~--~i~~l~~h~ 1277 (1354)
.+++|+.||.|++||++++....... ..|...|.+++|+|+ +.++++++.||.|++||+.++.. ....+..|.
T Consensus 150 ~l~~g~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~ 224 (299)
T d1nr0a2 150 FVAVGGQDSKVHVYKLSGASVSEVKT---IVHPAEITSVAFSNN--GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 224 (299)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE---EECSSCEEEEEECTT--SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111---111111111111111--1111111111111111111111111111111111
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 9858999927999899996899199995799-3478982557864445678749999944997999998898099919
Q 000681 1278 GSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1278 ~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g-~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
..|++++|+|++.+|++|+.|+.|++|++.. .....+.. +. .+...+.++.| +++.+|++++.|+.|++||
T Consensus 225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~----~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GA----HAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TS----STTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEE-CC----CCCCCEEEEEE-CCCCEEEEEECCCEEEEEE
T ss_conf 1111112466645138882899799998999973148983-48----98896899997-7989999992899799994
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-28 Score=217.55 Aligned_cols=269 Identities=17% Similarity=0.262 Sum_probs=224.5
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCC----CEEE
Q ss_conf 210002889862798307993999858999----------98379999589999999978994999987999----3678
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLN 1077 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg----~~l~ 1077 (1354)
+....+++++..+++++.|+.|++||..++ ..|.+++|+|++.++++|+.|+.+.+|+.... ....
T Consensus 58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 137 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCE
T ss_conf 88999989999999997899555631021025799724653377567601211443101332010133222212221110
Q ss_pred EEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEE
Q ss_conf 96279999998699999860899899999689809999866777850488401024589997112503799935999499
Q 000681 1078 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1157 (1354)
Q Consensus 1078 ~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Ll 1157 (1354)
.+.+|. ........ ..+..+.....++....|.... ..... ....+...+.. ..+.+....++
T Consensus 138 ~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~ 200 (340)
T d1tbga_ 138 ELAGHT---GYLSCCRF---LDDNQIVTSSGDTTCALWDIET--GQQTT-----TFTGHTGDVMS----LSLAPDTRLFV 200 (340)
T ss_dssp EECCCS---SCEEEEEE---EETTEEEEEETTTEEEEEETTT--TEEEE-----EEECCSSCEEE----EEECTTSSEEE
T ss_pred ECCCCC---CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC--CCCCC-----CCCCCCEEEEE----ECCCCCCCEEE
T ss_conf 013542---11011111---1111111112445432001232--21111-----12331015763----00124421268
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 99789819999888885134542499999827999974999999999889909999877997226741678878888599
Q 000681 1158 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1237 (1354)
Q Consensus 1158 sag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~s 1237 (1354)
+++.|+.|++||++++. ++..+..|... |+++ .++++++++++|+.||.|++||++.... ...+ ....+...+.+
T Consensus 201 ~~~~d~~v~i~d~~~~~-~~~~~~~h~~~-i~~v-~~~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~-~~~~~~~~i~~ 275 (340)
T d1tbga_ 201 SGACDASAKLWDVREGM-CRQTFTGHESD-INAI-CFFPNGNAFATGSDDATCRLFDLRADQE-LMTY-SHDNIICGITS 275 (340)
T ss_dssp EEETTTEEEEEETTTTE-EEEEECCCSSC-EEEE-EECTTSSEEEEEETTSCEEEEETTTTEE-EEEE-CCTTCCSCEEE
T ss_pred EEECCCEEEEEECCCCC-EEEEEECCCCC-EEEE-EECCCCCEEEEEECCCEEEEEEECCCCC-CCCC-CCCCCCCCEEE
T ss_conf 76057369999999994-88999578898-5899-9979989999996999699975212211-1111-12244574589
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 99922999999999977992999967899721799915799858999927999899996899199995
Q 000681 1238 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1238 i~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
+.|+++ +.+|++|+.||.|++||+.++ +++.++.+|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 276 ~~~s~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 276 VSFSKS--GRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECSS--SCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCC--CCEEEEEECCCEEEEEECCCC-CEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 999899--999999979798999999999-39899848999789999908999999990699799859
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.8e-29 Score=224.77 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=215.3
Q ss_pred HHHHEEECCCCCCEEEEEECCCCEEEEECCCC------------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 63210002889862798307993999858999------------983799995899999999789949999879993678
Q 000681 1010 EHIAKCQRSCNSFDLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN 1077 (1354)
Q Consensus 1010 e~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~ 1077 (1354)
|.|....+++++..++++..++.|.+|+...+ ..|++++|+|++++|++++.|+.|++|++.++....
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCC
T ss_conf 88389999899999999948898999988899789999955889988899997999999999799939998620332110
Q ss_pred --EEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCE
Q ss_conf --962799999986999998608998999996898099998667778504884010245899971125037999359994
Q 000681 1078 --SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1078 --~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~ 1155 (1354)
.+..|. ..|+++.| ++++..|++++.|+.|++|+........... .....|...+.+ ++|+|++..
T Consensus 88 ~~~~~~~~---~~v~~i~~--~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~v~~----v~~~p~~~~ 155 (371)
T d1k8kc_ 88 TLVILRIN---RAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCK---HIKKPIRSTVLS----LDWHPNSVL 155 (371)
T ss_dssp EEECCCCS---SCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEE---EECTTCCSCEEE----EEECTTSSE
T ss_pred CCCCCCCC---CCCCCCCC--CCCCCCCEEECCCCCCEEEEEECCCCCCCCC---CCCCCCCCCCCC----CCCCCCCCC
T ss_conf 01223221---10001111--1112110000025763025442033433111---001011122211----111111111
Q ss_pred EEEEECCCEEEEEECCCCC-----------------EEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 9999789819999888885-----------------13454249999982799997499999999988990999987799
Q 000681 1156 LYASGEVSSIMLWDLEKEQ-----------------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1218 (1354)
Q Consensus 1156 Llsag~Dg~I~IWDl~t~~-----------------~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~ 1218 (1354)
+++++.|+.|++||..... ........|... |.++ .++++++.+++++.||.|++||++.+
T Consensus 156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~-~~s~~g~~l~s~~~d~~i~iwd~~~~ 233 (371)
T d1k8kc_ 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW-VHGV-CFSANGSRVAWVSHDSTVCLADADKK 233 (371)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC-EEEE-EECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-EEEE-EEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 000134767999840157643100122111111110112440476674-7898-75123321000014786058864101
Q ss_pred CEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE--------------------------
Q ss_conf 722674167887888859999922999999999977992999967899721799--------------------------
Q 000681 1219 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT-------------------------- 1272 (1354)
Q Consensus 1219 ~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~-------------------------- 1272 (1354)
.. +..+. .|..+|.+++|+++ +.++++| .|+.+++|...........
T Consensus 234 ~~-~~~~~---~~~~~v~s~~fs~d--~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (371)
T d1k8kc_ 234 MA-VATLA---SETLPLLAVTFITE--SSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK 306 (371)
T ss_dssp TE-EEEEE---CSSCCEEEEEEEET--TEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred CC-EEEEE---CCCCCCEEEEECCC--CCEEEEE-CCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 21-00000---14665203654699--9799998-199267877608986288720206765421246220016850652
Q ss_pred --------------EECCCCCEEEEEECCCCC----EEEEEECCCCEEEEECC
Q ss_conf --------------915799858999927999----89999689919999579
Q 000681 1273 --------------IDAHRGSLSALAVHRHAP----IIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1273 --------------l~~h~~~ItsLafspdg~----~Lasgs~Dg~I~Iwd~~ 1307 (1354)
...|.+.|+++++++.+. .|++++.||.|++||++
T Consensus 307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred EEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 05871245566141255569889999948998656799999189939999698
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-28 Score=216.07 Aligned_cols=302 Identities=16% Similarity=0.274 Sum_probs=223.8
Q ss_pred CCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 889862798307993999858999----------9837999958999999997899499998799936789627999999
Q 000681 1018 SCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK 1087 (1354)
Q Consensus 1018 ~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~ 1087 (1354)
+.++..+++++.|+.|++||..++ ..|++++|+++ .+|++|+.|+.|++|+....+......... .
T Consensus 20 ~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~---~ 95 (355)
T d1nexb2 20 QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHN---S 95 (355)
T ss_dssp EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCS---S
T ss_pred EECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCC---C
T ss_conf 988999999918990999989999399999789998899998699-999999645244321111111111110011---1
Q ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEE------EE----------ECCCCCCCCCCCCEEEEEEEC
Q ss_conf 86999998608998999996898099998667778504884------01----------024589997112503799935
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT------AF----------SSIQGHKPGVRCSNVVVDWQQ 1151 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs------~~----------~~l~~h~~~V~si~~~i~~sp 1151 (1354)
........+.+++..+++++.||.|++|++........... .. .....|... +..+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~ 169 (355)
T d1nexb2 96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS------VRTVSG 169 (355)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC------EEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCC------CCCCCC
T ss_conf 11111111112322045543888689998567730012465200010000011234012101100222------100002
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 99949999789819999888885134542499999827999974999999999889909999877997226741678878
Q 000681 1152 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1231 (1354)
Q Consensus 1152 ~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h 1231 (1354)
++..++.+..|+.|++||+.+++ .+.....+... +.++ .+++++..+++++.||.|++||.+++. ....+. +|
T Consensus 170 ~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~---~h 242 (355)
T d1nexb2 170 HGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDR-IYST-IYDHERKRCISASMDTTIRIWDLENGE-LMYTLQ---GH 242 (355)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-EEETTTTEEEEEETTSCEEEEETTTCC-EEEEEC---CC
T ss_pred CCCEEEEECCCCEEEEEECCCCC-CEEEEECCCCC-CCCC-CCCCCCEEEECCCCCCEEEEEECCCCC-CCCCCC---CC
T ss_conf 56334421144204443013110-00110001233-2111-111210021012456368763012211-111111---11
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEE-EECCCCCEEEEEECCCCEEEEEC-CCC
Q ss_conf 8885999992299999999997799299996789972179991579985899-99279998999968991999957-993
Q 000681 1232 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL-AVHRHAPIIASGSAKQLIKVFSL-EGE 1309 (1354)
Q Consensus 1232 ~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsL-afspdg~~Lasgs~Dg~I~Iwd~-~g~ 1309 (1354)
...|.++.++ ++++++|+.||.|++||+++.. . .+..|...+.++ .+++++.++++|+ |+.|++||+ +++
T Consensus 243 ~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~ 314 (355)
T d1nexb2 243 TALVGLLRLS----DKFLVSAAADGSIRGWDANDYS-R--KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 314 (355)
T ss_dssp SSCCCEEEEC----SSEEEEECTTSEEEEEETTTCC-E--EEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCCCCCCCCC----CCEEEEEECCCCCCCCCCCCCC-E--ECCCCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCC
T ss_conf 1111111232----1003332011111111111111-0--00124688229999849998999980-9979999999997
Q ss_pred EEEE-EECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 4789-8255786444567874999994499799999889809991
Q 000681 1310 QLGT-IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1310 ~l~~-i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IW 1353 (1354)
.+.. +.. | .+.|.+++|+|+ .++++++.||.++||
T Consensus 315 ~~~~~~~~-~-------~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 315 LVHANILK-D-------ADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp BCCSCTTT-T-------CSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred EEEEEECC-C-------CCCEEEEEECCC-EEEEEEECCCCEEEE
T ss_conf 98888458-9-------998999998399-199999898909999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.1e-26 Score=203.55 Aligned_cols=286 Identities=16% Similarity=0.272 Sum_probs=202.1
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98379999589999999978994999987999367896279999998699999860899899999689809999866777
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~ 1121 (1354)
..|.+ ++++++++|++|+.||.|+|||+.+++.+.++.+|. ..|.++.| + +.+|++++.|+.+++|+.....
T Consensus 17 ~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~--~--~~~l~s~s~D~~~~~~~~~~~~ 88 (342)
T d2ovrb2 17 DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGE 88 (342)
T ss_dssp TSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTE
T ss_pred CCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--C--CCCCCCCEECCCCCCCCCCCCC
T ss_conf 75099-999789999999189909999899997999994889---99899994--7--9863210000011111111000
Q ss_pred CCCEEE------EEEE----------------CCCCCCCCC-----CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 850488------4010----------------245899971-----1250379993599949999789819999888885
Q 000681 1122 DKQKLV------TAFS----------------SIQGHKPGV-----RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1174 (1354)
Q Consensus 1122 ~~~~lv------s~~~----------------~l~~h~~~V-----~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~ 1174 (1354)
...... .... ......... ........+......+++++.|+.|++||.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~ 168 (342)
T d2ovrb2 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168 (342)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE
T ss_pred CEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCCCE
T ss_conf 00001233304765202465221234440378740355630011100111100000133302433589869995252343
Q ss_pred EEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC
Q ss_conf 13454249999982799997499999999988990999987799722674167887888859999922999999999977
Q 000681 1175 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1254 (1354)
Q Consensus 1175 ~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~ 1254 (1354)
.+..+..|... +..+ ..++..+++|+.||.|++||++.++ ...... +|...+.++.++ ++++++|+.
T Consensus 169 -~~~~~~~~~~~-~~~~---~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~s~s~ 235 (342)
T d2ovrb2 169 -CLHTLQGHTNR-VYSL---QFDGIHVVSGSLDTSIRVWDVETGN-CIHTLT---GHQSLTSGMELK----DNILVSGNA 235 (342)
T ss_dssp -EEEEECCCSSC-EEEE---EECSSEEEEEETTSCEEEEETTTCC-EEEEEC---CCCSCEEEEEEE----TTEEEEEET
T ss_pred -EEEEECCCCCC-CCCC---CCCCCEEEEEECCCEEEEEECCCCE-EEEEEC---CCCCCEEEEECC----CCEEEEECC
T ss_conf -66787275444-2100---6899999999589939995255653-656741---665320577068----999999748
Q ss_pred CCCEEEEECCCCCCCEEEEEC---CCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 992999967899721799915---7998589999279998999968991999957-993478982557864445678749
Q 000681 1255 AGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN 1330 (1354)
Q Consensus 1255 DG~I~IWDi~~~~~~i~~l~~---h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~ 1330 (1354)
||.|++||.... +....+.. |...+.++.++ +.++++|+.||.|++||+ +++.+..+.. .. ...+.+.|+
T Consensus 236 d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~-~~--~~~~~~~v~ 309 (342)
T d2ovrb2 236 DSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT-LE--SGGSGGVVW 309 (342)
T ss_dssp TSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE-CT--TGGGTCEEE
T ss_pred CCEEEEEECCCC-CCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEEC-CC--CCCCCCCEE
T ss_conf 988999865544-2211122100011010000137--98449990899899999999979899862-34--789889789
Q ss_pred EEEEECCCCEEEEEECCCE----EEECC
Q ss_conf 9999449979999988980----99919
Q 000681 1331 CLTFHPYQVLLAAGSADAC----VSIHS 1354 (1354)
Q Consensus 1331 sLafspdg~~Lasgs~Dg~----I~IWd 1354 (1354)
+++|+|++.++++|+.||+ |.+||
T Consensus 310 ~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 310 RIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 9998799989999968999704899993
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.6e-27 Score=210.37 Aligned_cols=273 Identities=17% Similarity=0.257 Sum_probs=206.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98379999589999999978994999987999367896279999998699999860899899999689809999866777
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1121 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~ 1121 (1354)
.-++|+.| ++++|++|+.||.|+|||..+++.+.++.+|. +.|++++| ++ +.+|++|+.||.|++|+...
T Consensus 14 ~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~--s~-~~~l~s~s~D~~i~iw~~~~-- 83 (355)
T d1nexb2 14 SVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD---GGVWALKY--AH-GGILVSGSTDRTVRVWDIKK-- 83 (355)
T ss_dssp SCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS---SCEEEEEE--ET-TTEEEEEETTCCEEEEETTT--
T ss_pred CCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CC-CCEEEEEECCCCCCCCCCCC--
T ss_conf 86999998--89999999189909999899993999997899---98899998--69-99999996452443211111--
Q ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC------------------
Q ss_conf 85048840102458999711250379993599949999789819999888885134542499------------------
Q 000681 1122 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS------------------ 1183 (1354)
Q Consensus 1122 ~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~------------------ 1183 (1354)
...... .....+..... ...+.+++..+++++.|+.|++||+.+.. ........
T Consensus 84 ~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T d1nexb2 84 GCCTHV---FEGHNSTVRCL----DIVEYKNIKYIVTGSRDNTLHVWKLPKES-SVPDHGEEHDYPLVFHTPEENPYFVG 155 (355)
T ss_dssp TEEEEE---ECCCSSCEEEE----EEEEETTEEEEEEEETTSEEEEEECCC------------CCCEEESCTTTCTTEEE
T ss_pred CCCCCC---CCCCCCCCCCC----CCCCCCCCCEEEEECCCCCEEEEECCCCC-EECCCCCCCEECCCEECCCCCCCEEE
T ss_conf 111111---10011111111----11111232204554388868999856773-00124652000100000112340121
Q ss_pred ----CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf ----9998279999749999999998899099998779972267416788788885999992299999999997799299
Q 000681 1184 ----SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1259 (1354)
Q Consensus 1184 ----~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~ 1259 (1354)
+...+. ...++++.++++..|+.|++||+++++ ...... ++...+.++.+++. +..+++++.||.|+
T Consensus 156 ~~~~~~~~v~---~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~d~~i~ 226 (355)
T d1nexb2 156 VLRGHMASVR---TVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILS---GHTDRIYSTIYDHE--RKRCISASMDTTIR 226 (355)
T ss_dssp EEECCSSCEE---EEEEETTEEEEEETTSCEEEEETTTTE-EEEEEC---CCSSCEEEEEEETT--TTEEEEEETTSCEE
T ss_pred EEEECCCCCC---CCCCCCCEEEEECCCCEEEEEECCCCC-CEEEEE---CCCCCCCCCCCCCC--CEEEECCCCCCEEE
T ss_conf 0110022210---000256334421144204443013110-001100---01233211111121--00210124563687
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEE-EEEECCC
Q ss_conf 996789972179991579985899992799989999689919999579934789825578644456787499-9994499
Q 000681 1260 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC-LTFHPYQ 1338 (1354)
Q Consensus 1260 IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~s-Lafspdg 1338 (1354)
+||.+++ ..+..+.+|...|.++++++ .++++|+.||.|++||..... ..+.. |. ..+.+ ..+++++
T Consensus 227 i~d~~~~-~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~-------~~~~~~~~~~~~~ 294 (355)
T d1nexb2 227 IWDLENG-ELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS-RKFSY-HH-------TNLSAITTFYVSD 294 (355)
T ss_dssp EEETTTC-CEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC-EEEEE-EC-------TTCCCCCEEEECS
T ss_pred EEECCCC-CCCCCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCC-EECCC-CC-------CCCEEEEEECCCC
T ss_conf 6301221-11111111111111112321--003332011111111111111-00012-46-------8822999984999
Q ss_pred CEEEEEECCCEEEECC
Q ss_conf 7999998898099919
Q 000681 1339 VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1339 ~~Lasgs~Dg~I~IWd 1354 (1354)
.++++|+ |+.|++||
T Consensus 295 ~~l~~g~-d~~i~vwd 309 (355)
T d1nexb2 295 NILVSGS-ENQFNIYN 309 (355)
T ss_dssp SEEEEEE-TTEEEEEE
T ss_pred CEEEEEE-CCEEEEEE
T ss_conf 8999980-99799999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-26 Score=206.40 Aligned_cols=267 Identities=17% Similarity=0.282 Sum_probs=208.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99837999958999999997899499998799936789627999999869999986089989999968980999986677
Q 000681 1041 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~ 1120 (1354)
..+|+|+.| ++++|++|+.||.|+|||..+++.+.++.+|. ..|+++.| ++++|++|+.||.|++|+...
T Consensus 15 ~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~- 84 (293)
T d1p22a2 15 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT---GSVLCLQY----DERVIITGSSDSTVRVWDVNT- 84 (293)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS---SCEEEEEC----CSSEEEEEETTSCEEEEESSS-
T ss_pred CCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEC----CCCEEECCCCCCCCCCCCCCC-
T ss_conf 998899987--69999999289939999999991999992677---87763423----630021001110110000024-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCCCCEEEEEEECCCC
Q ss_conf 7850488401024589997112503799935999499997898199998888851--34542499999827999974999
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~--~i~~l~~~~~~~VtsI~~~s~~g 1198 (1354)
+..... ...... .. ..+......++++..++.+++||...... ....+..+.. .+..+ .+ ..
T Consensus 85 -~~~~~~-----~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~--~~ 148 (293)
T d1p22a2 85 -GEMLNT-----LIHHCE--AV----LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVV-DF--DD 148 (293)
T ss_dssp -CCEEEE-----ECCCCS--CE----EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEE-EE--ET
T ss_pred -CCCCCC-----CCCCCC--CC----CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCC-EE--CC
T ss_conf -641001-----111110--00----01111110000013566306861344544421210001135-43110-00--00
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCC
Q ss_conf 99999988990999987799722674167887888859999922999999999977992999967899721799915799
Q 000681 1199 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1199 ~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~ 1278 (1354)
..+++++.|+.|++||.++.+ ....+. ++...+..+.++ +..+++++.||.|++||+++. ..+..+..+..
T Consensus 149 ~~~~~~s~d~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~ 219 (293)
T d1p22a2 149 KYIVSASGDRTIKVWNTSTCE-FVRTLN---GHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 219 (293)
T ss_dssp TEEEEEETTSEEEEEETTTCC-EEEEEE---CCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTC-CEEEEECCCSS
T ss_pred CCCCCCCCCCCEEEECCCCCC-EEEEEC---CCCCCCCCCCCC----CCEEEEECCCCEEEEEECCCC-EEEEEECCCCE
T ss_conf 220110699860410078883-889971---554453221689----875887658998999866556-14665214310
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECC----------CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 85899992799989999689919999579----------93478982557864445678749999944997999998898
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFSLE----------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1348 (1354)
Q Consensus 1279 ~ItsLafspdg~~Lasgs~Dg~I~Iwd~~----------g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg 1348 (1354)
.+.. +.+++.+|++|+.||.|++|++. ...+..+.. |. +.|++++|+ +.+|++++.||
T Consensus 220 ~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-H~-------~~V~~v~~d--~~~l~s~s~Dg 287 (293)
T d1p22a2 220 LVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HS-------GRVFRLQFD--EFQIVSSSHDD 287 (293)
T ss_dssp CEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CS-------SCCCCEEEC--SSCEEECCSSS
T ss_pred EEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECC-CC-------CCEEEEEEC--CCEEEEEECCC
T ss_conf 0000--145410799986799799998888864445677545578458-89-------988999971--99999992299
Q ss_pred EEEECC
Q ss_conf 099919
Q 000681 1349 CVSIHS 1354 (1354)
Q Consensus 1349 ~I~IWd 1354 (1354)
.|++||
T Consensus 288 ~i~iWD 293 (293)
T d1p22a2 288 TILIWD 293 (293)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.3e-25 Score=193.97 Aligned_cols=298 Identities=14% Similarity=0.233 Sum_probs=208.1
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC------EEEEEECCCCCCCCEEEEEEEE--E---CCCCEEEEEECCC
Q ss_conf 983799995899999999789949999879993------6789627999999869999986--0---8998999996898
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVN--E---LDVSLLLVASCNG 1110 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~------~l~~l~~h~~~~~~ItsL~f~~--s---~d~~~Lvtgs~DG 1110 (1354)
..|.++++++ +++++++.|+.|+|||..+.. .......|. ..+..+.... . .+..++++++.||
T Consensus 15 ~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 15 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred CCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECC---CCCEEEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 7127999969--999999799969987898788776540467654204---77167666750015799876899994899
Q ss_pred EEEEEECCCCCCCCEEEEE-EECCC--CCCCCCCCCEEEEEEECC-----CCEEEEEECCCEEEEEECCCCCE-------
Q ss_conf 0999986677785048840-10245--899971125037999359-----99499997898199998888851-------
Q 000681 1111 NIRIWKDYDQKDKQKLVTA-FSSIQ--GHKPGVRCSNVVVDWQQQ-----SGYLYASGEVSSIMLWDLEKEQQ------- 1175 (1354)
Q Consensus 1111 ~IrIWdl~~~~~~~~lvs~-~~~l~--~h~~~V~si~~~i~~sp~-----~~~Llsag~Dg~I~IWDl~t~~~------- 1175 (1354)
.|++|+............. ...+. .+...+.. +.|.+. ...+++++.||.+++|++.....
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE----EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred CEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEE----EEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 19999822898205651245632431157896689----99844788654217999838981999874047753410233
Q ss_pred -------EEEEE--CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--ECCCCCCCCCEEEEEEECCC
Q ss_conf -------34542--49999982799997499999999988990999987799722674--16788788885999992299
Q 000681 1176 -------MVNPI--PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS--TRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1176 -------~i~~l--~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~--~~~~~~h~~~I~si~fsp~~ 1244 (1354)
..... .......++++ .+++++ ++++|+.||.|++||+++++..... .....+|...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd- 242 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSV-DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ- 242 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEE-EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS-
T ss_pred EECCCEECCCCEECCCCCCCCEEEE-EECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCC-
T ss_conf 1032000145100025789867899-978999-8999938982999860233211000011111242563877004665-
Q ss_pred CCCEEEEEECCCC---EEEEECCCCCCCEEEEE-------------CCCCCEEEEEECCCCCEEEEEECCCCEEEEE-CC
Q ss_conf 9999999977992---99996789972179991-------------5799858999927999899996899199995-79
Q 000681 1245 DPAKIVSASQAGD---IQFLDIRNHKDAYLTID-------------AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LE 1307 (1354)
Q Consensus 1245 ~g~~Lvsgs~DG~---I~IWDi~~~~~~i~~l~-------------~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~ 1307 (1354)
+.+|++|+.|+. |++||+.++ ..+..+. +|.+.|++++|+|++++|++|+.|++|++|| .+
T Consensus 243 -g~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 243 -GSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred -CCEEEEECCCCCCCEEEECCCCCC-EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf -320112428988421001035321-344431156666431023202358666001389888069877999899999999
Q ss_pred CCEEEEEECCCCCCCC--------------CCCCCEEEEEEECCC----------CEEEEEECCCEEEECC
Q ss_conf 9347898255786444--------------567874999994499----------7999998898099919
Q 000681 1308 GEQLGTIRYHHPSFMA--------------QKIGSVNCLTFHPYQ----------VLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1308 g~~l~~i~~~h~~fl~--------------~~~~~V~sLafspdg----------~~Lasgs~Dg~I~IWd 1354 (1354)
++.+.++++ |..-.. -..+.+.++.|.+.+ ..+++++.|+.|++|.
T Consensus 321 g~~~~~l~g-H~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 321 KERITTLNM-HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TEEEEEEEC-CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCEEEEECC-CCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 979999988-6876137734899999999999831246998866766312368899799999199089990
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.5e-26 Score=203.15 Aligned_cols=268 Identities=15% Similarity=0.176 Sum_probs=202.7
Q ss_pred HHHEEECCCCCCEEEEEECCCCEEEEECCCC-----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE---E
Q ss_conf 3210002889862798307993999858999-----------9837999958999999997899499998799936---7
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTL---L 1076 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~---l 1076 (1354)
.+....+++++..+++++.|+.|++||.+++ ..|++++|+|++.+++ ++.|+.+++|+...... .
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d~~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWDDHLKVVPAGGSGVDSSK 92 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETTTEEEEECSSSSSSCTTS
T ss_pred CCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEEC-CCCEEEEEEECCCCCCCCCCC
T ss_conf 8289999799999999908992999999999688998378877489988403311210-231026887316776201110
Q ss_pred EEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 89627999999869999986089989999968980999986677785048840102458999711250379993599949
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1077 ~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~L 1156 (1354)
.....+. ..+.++.| ++++.++++++ ++.+++|+... .... .. ...+.+ ++|++++..+
T Consensus 93 ~~~~~~~---~~~~~~~~--s~~g~~~~~~~-~~~i~~~~~~~----~~~~-----~~--~~~~~~----~~~s~~~~~l 151 (299)
T d1nr0a2 93 AVANKLS---SQPLGLAV--SADGDIAVAAC-YKHIAIYSHGK----LTEV-----PI--SYNSSC----VALSNDKQFV 151 (299)
T ss_dssp CCEEECS---SCEEEEEE--CTTSSCEEEEE-SSEEEEEETTE----EEEE-----EC--SSCEEE----EEECTTSCEE
T ss_pred CCCCCCC---CCCCCCCC--CCCCCCCCCCC-CCCCCCCCCCC----CCCC-----CC--CCCCCC----CCCCCCCCCC
T ss_conf 0011113---44321001--12211111222-22221111111----1110-----11--112332----2111111111
Q ss_pred EEEECCCEEEEEECCCCCEEEEE-ECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCE
Q ss_conf 99978981999988888513454-24999998279999749999999998899099998779972267416788788885
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1157 lsag~Dg~I~IWDl~t~~~~i~~-l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I 1235 (1354)
++++.||.|++||++++. .... ...|. ..|+++ .+++++.++++++.||.|++||+.++.. ........+|...|
T Consensus 152 ~~g~~dg~i~~~d~~~~~-~~~~~~~~~~-~~i~~~-~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~h~~~v 227 (299)
T d1nr0a2 152 AVGGQDSKVHVYKLSGAS-VSEVKTIVHP-AEITSV-AFSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKV 227 (299)
T ss_dssp EEEETTSEEEEEEEETTE-EEEEEEEECS-SCEEEE-EECTTSSEEEEEETTSCEEEEEGGGTTE-ESCCCCCCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf 111111111111111111-1111111111-111111-1111111111111111111111111111-11111111111111
Q ss_pred EEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC-EEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9999922999999999977992999967899721-7999157-9985899992799989999689919999579
Q 000681 1236 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA-YLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1236 ~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~-i~~l~~h-~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
++++|+|+ +.+|++|+.||.|++||++..... ......| ...+.++.+ +++.+|++++.|+.|++||+.
T Consensus 228 ~~l~~s~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 228 ACVSWSPD--NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEECTT--SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred CCCCCCCC--CCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECC
T ss_conf 11124666--451388828997999989999731489834898896899997-798999999289979999444
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-26 Score=206.79 Aligned_cols=287 Identities=7% Similarity=0.084 Sum_probs=203.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 98379999589999999978994999987999367---896279999998699999860899899999689809999866
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL---NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l---~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~ 1118 (1354)
+.|++|+|+|++++|++|+.||+|+|||+.++... ....+|. ..|++++|.+ .++.+|++|+.||.|++|+..
T Consensus 12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---~~V~~v~f~~-~~~~~l~sg~~d~~v~~w~~~ 87 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---HPLLCCNFID-NTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---SCEEEEEEEE-SSSEEEEEEETTSCEEEECSS
T ss_pred CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCC---CCEEEEEEEC-CCCCEEEECCCCCCEEEEECC
T ss_conf 978889995899999999799929999756998636898855899---9889999958-999789981265311454204
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE---EEEEECCCC-CCCEEEEEEE
Q ss_conf 777850488401024589997112503799935999499997898199998888851---345424999-9982799997
Q 000681 1119 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ---MVNPIPSSS-DCSISALTAS 1194 (1354)
Q Consensus 1119 ~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~---~i~~l~~~~-~~~VtsI~~~ 1194 (1354)
. +..... ...+...... ...+.+....+++++.++.+++||++.... .......+. ....... ..
T Consensus 88 ~--~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (342)
T d1yfqa_ 88 G--SPSFQA-----LTNNEANLGI---CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF-TM 156 (342)
T ss_dssp S--SSSEEE-----CBSCCCCSCE---EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE-EE
T ss_pred C--CCCCCC-----CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEE-EE
T ss_conf 4--320000-----0111111111---11111111111110122211102023444330230002430012000001-00
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC-----C
Q ss_conf 49999999998899099998779972267416788788885999992299999999997799299996789972-----1
Q 000681 1195 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD-----A 1269 (1354)
Q Consensus 1195 s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~-----~ 1269 (1354)
...+..+++++.||.|++||++......... ....+...+.+..+.+. ++..+++++.||.+.+|+...... .
T Consensus 157 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~ 234 (342)
T d1yfqa_ 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPK-EQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp EECSSEEEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSG-GGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred ECCCCCEEEECCCCCEEEEECCCCCCCCEEE-EECCCCCCEEEEEEECC-CCCEEEEECCCCEEEEEEECCCCCEEECCC
T ss_conf 0168702465179847887605676341112-10254221014676369-998788654899599998059864011123
Q ss_pred EEEE---------ECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 7999---------157998589999279998999968991999957-993478982557864445678749999944997
Q 000681 1270 YLTI---------DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1270 i~~l---------~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
...+ ..|...+++++|+|++.+|++|+.||.|++||. +++.+..+.. + ..+..++|+|++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~-~--------~~~~~~~~s~~~~ 305 (342)
T d1yfqa_ 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-F--------NEDSVVKIACSDN 305 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-C--------SSSEEEEEEECSS
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-C--------CCCEEEEEEECCC
T ss_conf 512565553147776235431599669844799987999899999998949887058-9--------9987999994799
Q ss_pred EEEEEECCCEEEECC
Q ss_conf 999998898099919
Q 000681 1340 LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1340 ~Lasgs~Dg~I~IWd 1354 (1354)
+|++++.|+.+++|.
T Consensus 306 ~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 306 ILCLATSDDTFKTNA 320 (342)
T ss_dssp EEEEEEECTHHHHCS
T ss_pred EEEEEECCCCEEEEE
T ss_conf 999999199278830
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-24 Score=190.14 Aligned_cols=264 Identities=15% Similarity=0.308 Sum_probs=198.0
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC
Q ss_conf 2889862798307993999858999----------983799995899999999789949999879993678962799999
Q 000681 1017 RSCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD 1086 (1354)
Q Consensus 1017 ~~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~ 1086 (1354)
.+.++..+++++.|+.|++||..++ ..|.++.|+++ +|++++.|+.+++|+............+.
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~--- 97 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHT--- 97 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCS---
T ss_pred EEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCCCCC---
T ss_conf 9978999999918990999989999799999488999899994798--63210000011111111000000012333---
Q ss_pred CCEEEEEE------------------------------------EEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 98699999------------------------------------860899899999689809999866777850488401
Q 000681 1087 KGISKLCL------------------------------------VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1130 (1354)
Q Consensus 1087 ~~ItsL~f------------------------------------~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~ 1130 (1354)
..+..... ........+++++.|+.|++|+... . ..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~--~--~~~--- 170 (342)
T d2ovrb2 98 STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--E--TCL--- 170 (342)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--T--EEE---
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCC--C--EEE---
T ss_conf 047652024652212344403787403556300111001111000001333024335898699952523--4--366---
Q ss_pred ECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEE
Q ss_conf 02458999711250379993599949999789819999888885134542499999827999974999999999889909
Q 000681 1131 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1210 (1354)
Q Consensus 1131 ~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsI 1210 (1354)
..+.+|...+ ..+..++..+++++.||.|++||++..+ .+..+..|... +.++ .+ +++++++|+.||.|
T Consensus 171 ~~~~~~~~~~------~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~~l~s~s~d~~i 239 (342)
T d2ovrb2 171 HTLQGHTNRV------YSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQSL-TSGM-EL--KDNILVSGNADSTV 239 (342)
T ss_dssp EEECCCSSCE------EEEEECSSEEEEEETTSCEEEEETTTCC-EEEEECCCCSC-EEEE-EE--ETTEEEEEETTSCE
T ss_pred EEECCCCCCC------CCCCCCCCEEEEEECCCEEEEEECCCCE-EEEEECCCCCC-EEEE-EC--CCCEEEEECCCCEE
T ss_conf 7872754442------1006899999999589939995255653-65674166532-0577-06--89999997489889
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-----CCCCCEEEEEE
Q ss_conf 9998779972267416788788885999992299999999997799299996789972179991-----57998589999
Q 000681 1211 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-----AHRGSLSALAV 1285 (1354)
Q Consensus 1211 rIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~-----~h~~~ItsLaf 1285 (1354)
++||....+ ....+..+..|...+.++.++ +.++++|+.||.|++||++++ +.+..+. +|.+.|++++|
T Consensus 240 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~ 313 (342)
T d2ovrb2 240 KIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN----KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRA 313 (342)
T ss_dssp EEEETTTCC-EEEEECSTTSCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEE
T ss_pred EEEECCCCC-CCCCCCCCCEEEECEEECCCC----CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCCCCCEEEEEE
T ss_conf 998655442-211122100011010000137----984499908998999999999-79899862347898897899998
Q ss_pred CCCCCEEEEEECCCC----EEEEECCCC
Q ss_conf 279998999968991----999957993
Q 000681 1286 HRHAPIIASGSAKQL----IKVFSLEGE 1309 (1354)
Q Consensus 1286 spdg~~Lasgs~Dg~----I~Iwd~~g~ 1309 (1354)
+|++.++++|+.||+ |++||++-+
T Consensus 314 s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 314 SNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 7999899999689997048999938998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.1e-25 Score=193.18 Aligned_cols=240 Identities=13% Similarity=0.158 Sum_probs=181.5
Q ss_pred CCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCE--------EEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC--C
Q ss_conf 9837999958--999999997899499998799936--------789627999999869999986089989999968--9
Q 000681 1042 KGTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--N 1109 (1354)
Q Consensus 1042 ~~I~sL~fsp--dg~~Latgs~Dg~I~IWd~~tg~~--------l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~--D 1109 (1354)
..|++++|+| ++.+|++|+.||+|+||++..++. ...+..|. +.|.++.| ++++.++++++. +
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~--s~~~~~l~~~~~~~~ 138 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA---GPISDISW--DFEGRRLCVVGEGRD 138 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS---SCEEEEEE--CTTSSEEEEEECCSS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC---CCEEEEEE--CCCCCCCCEEECCCC
T ss_conf 9889999811799979999948997798540588621565100254113656---73779998--999882201001244
Q ss_pred CEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCE-EEEEECCCEEEEEECCCCCEEEEEECCC--CCC
Q ss_conf 8099998667778504884010245899971125037999359994-9999789819999888885134542499--999
Q 000681 1110 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSS--SDC 1186 (1354)
Q Consensus 1110 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~-Llsag~Dg~I~IWDl~t~~~~i~~l~~~--~~~ 1186 (1354)
+.+++|+..+ ++. + ..+.+|...+.+ +.|++++.. +++++.|+.+++||....+ ....+..+ +..
T Consensus 139 ~~~~~~~~~~--~~~--~---~~~~~h~~~v~~----~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~ 206 (325)
T d1pgua1 139 NFGVFISWDS--GNS--L---GEVSGHSQRINA----CHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGS 206 (325)
T ss_dssp CSEEEEETTT--CCE--E---EECCSCSSCEEE----EEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTC
T ss_pred CEEEEEEECC--CCC--C---EEEEECCCCCCC----CCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCCCC
T ss_conf 0478885023--311--0---012001234321----11123432068886211122111122110-0000000157777
Q ss_pred CEEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE---CCCCCCEEEEEECCCCEEEEE
Q ss_conf 82799997499-99999998899099998779972267416788788885999992---299999999997799299996
Q 000681 1187 SISALTASQVH-GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ---PGLDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1187 ~VtsI~~~s~~-g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fs---p~~~g~~Lvsgs~DG~I~IWD 1262 (1354)
.|+++ .++|+ +.++++++.||.|++||+++++ ....+.. |...+.++.|+ ++ +.+|++++.|+.|++||
T Consensus 207 ~v~~v-~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~---~~~~v~~~~~s~~~~d--g~~l~s~s~D~~i~iwd 279 (325)
T d1pgua1 207 FVRDV-EFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIED---DQEPVQGGIFALSWLD--SQKFATVGADATIRVWD 279 (325)
T ss_dssp CEEEE-EECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCB---TTBCCCSCEEEEEESS--SSEEEEEETTSEEEEEE
T ss_pred CCEEE-EECCCCCEECCCCCCCCCEEEEEECCCC-CCCCCCC---CCCCCCCCEEEEECCC--CCEEEEEECCCEEEEEE
T ss_conf 52776-3034531000011233210134300122-2111111---1111111000000368--99999995899399999
Q ss_pred CCCCCCCEEEEECCCCC--EEEEEECCC-CCEEEEEECCCCEEEEEC
Q ss_conf 78997217999157998--589999279-998999968991999957
Q 000681 1263 IRNHKDAYLTIDAHRGS--LSALAVHRH-APIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1263 i~~~~~~i~~l~~h~~~--ItsLafspd-g~~Lasgs~Dg~I~Iwd~ 1306 (1354)
++++ +++..+..|... +..+++.+. ..+|++++.||.|++||+
T Consensus 280 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 280 VTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTTT-EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCC-CEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 9999-788999954874067699999889999999979999999979
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-25 Score=198.92 Aligned_cols=267 Identities=15% Similarity=0.243 Sum_probs=202.1
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEE
Q ss_conf 99985899998379999589999999978994999987999367896279999998699999860899899999689809
Q 000681 1033 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1112 (1354)
Q Consensus 1033 I~iWd~~~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~I 1112 (1354)
++...-. ..+|++++|+| |++|+.||.|++||..++ ...|. ..|.++.+ + .+..+++++.|+++
T Consensus 6 i~~l~gH-~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~---~~V~~~~~--~-~~~~~~s~s~D~~v 69 (287)
T d1pgua2 6 LKTISGH-NKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHS---NLIVSLDN--S-KAQEYSSISWDDTL 69 (287)
T ss_dssp EEEECCC-SSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCC---SCEEEEEC--C-STTCCEEEETTTEE
T ss_pred EEEECCC-CCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCC---CCEEEEEE--C-CCCEEEEEEECCCC
T ss_conf 4999887-98649999895----789848991999989998-----88877---87899996--5-99728988610122
Q ss_pred EEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 99986677785048840102458999711250379993599949999789819999888885134542499999827999
Q 000681 1113 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1192 (1354)
Q Consensus 1113 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~ 1192 (1354)
++|+.... + + ...+.. +.+.+ ++.+++.+.++.+.+|+..++. .+..+.... .+.++
T Consensus 70 ~~w~~~~~----~-------~---~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~- 126 (287)
T d1pgua2 70 KVNGITKH----E-------F---GSQPKV----ASANN-DGFTAVLTNDDDLLILQSFTGD-IIKSVRLNS--PGSAV- 126 (287)
T ss_dssp EETTEEEE----E-------C---SSCEEE----EEECS-SSEEEEEETTSEEEEEETTTCC-EEEEEECSS--CEEEE-
T ss_pred CCCCCCCC----C-------C---CCCEEE----EEECC-CCCEEEEEECCCCEEEECCCEE-EEEECCCCC--EEEEE-
T ss_conf 21111111----1-------1---221014----66416-7856999603321000011003-543101222--03565-
Q ss_pred EECCCCCEEEEEECCC-EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEE
Q ss_conf 9749999999998899-099998779972267416788788885999992299999999997799299996789972179
Q 000681 1193 ASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1271 (1354)
Q Consensus 1193 ~~s~~g~~Lvsgs~DG-sIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~ 1271 (1354)
.+++..+++++.++ .+++|++........ ....|...+++++|+|+ +.+|++|+.||.|++||+.++.....
T Consensus 127 --~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 127 --SLSQNYVAVGLEEGNTIQVFKLSDLEVSFD---LKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDLQSREVKTS 199 (287)
T ss_dssp --EECSSEEEEEETTTSCEEEEETTEEEEEEE---CSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred --ECCCCCEEEECCCCCEEEEEECCCCCEEEE---EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf --214751110002210002100012210001---21024785369995167--65211011111100000023321100
Q ss_pred EEECCCCCEEEEEECCC----------CCEEEEEECCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99157998589999279----------9989999689919999579--93478982557864445678749999944997
Q 000681 1272 TIDAHRGSLSALAVHRH----------APIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1339 (1354)
Q Consensus 1272 ~l~~h~~~ItsLafspd----------g~~Lasgs~Dg~I~Iwd~~--g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~ 1339 (1354)
.+..|...|.+++|+|. +.++++|+.|+.|++|++. ++.+..+.+ |. +.|++++|+|++
T Consensus 200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~-h~-------~~V~~v~~~~~~- 270 (287)
T d1pgua2 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-HK-------DGVNNLLWETPS- 270 (287)
T ss_dssp CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-ST-------TCEEEEEEEETT-
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC-CC-------CCEEEEEECCCC-
T ss_conf 011111111000001365410012678870276649995999888999758999278-78-------985899998999-
Q ss_pred EEEEEECCCEEEECC
Q ss_conf 999998898099919
Q 000681 1340 LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1340 ~Lasgs~Dg~I~IWd 1354 (1354)
.|++++.|+.|++|+
T Consensus 271 ~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 271 TLVSSGADACIKRWN 285 (287)
T ss_dssp EEEEEETTSCEEEEE
T ss_pred EEEEEECCCEEEEEE
T ss_conf 899997999299999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.6e-23 Score=182.17 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=183.1
Q ss_pred CEEEEEECCCCEEEEECCCCC----------------CEEEEE---ECC----CCCEEEEEECCCCEEEEECCCCCE---
Q ss_conf 627983079939998589999----------------837999---958----999999997899499998799936---
Q 000681 1022 FDLAVSKLNNPIACWDTRFEK----------------GTKTAL---LQP----FSPIVVAADENERIKIWNYEEDTL--- 1075 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~~----------------~I~sL~---fsp----dg~~Latgs~Dg~I~IWd~~tg~~--- 1075 (1354)
..+++++.|+.|++||.+... ++..+. ..+ +..++++++.||.|++|+......
T Consensus 25 ~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~ 104 (393)
T d1sq9a_ 25 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104 (393)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 99999979996998789878877654046765420477167666750015799876899994899199998228982056
Q ss_pred EEE--EECCC--CCCCCEEEEEEEEEC---CCCEEEEEECCCEEEEEECCCCCC-----------CCEEEEEEECCCCCC
Q ss_conf 789--62799--999986999998608---998999996898099998667778-----------504884010245899
Q 000681 1076 LNS--FDNHD--FPDKGISKLCLVNEL---DVSLLLVASCNGNIRIWKDYDQKD-----------KQKLVTAFSSIQGHK 1137 (1354)
Q Consensus 1076 l~~--l~~h~--~~~~~ItsL~f~~s~---d~~~Lvtgs~DG~IrIWdl~~~~~-----------~~~lvs~~~~l~~h~ 1137 (1354)
... ..... .....+..+.|.... .+.++++++.||.+++|++..... ...+.........+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
T d1sq9a_ 105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184 (393)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred EECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCEECCCCEECCCCCC
T ss_conf 51245632431157896689998447886542179998389819998740477534102331032000145100025789
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC------CCCCCCEEEEEEECCCCCEEEEEECCCE--
Q ss_conf 97112503799935999499997898199998888851345424------9999982799997499999999988990--
Q 000681 1138 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP------SSSDCSISALTASQVHGGQLAAGFVDGS-- 1209 (1354)
Q Consensus 1138 ~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~------~~~~~~VtsI~~~s~~g~~Lvsgs~DGs-- 1209 (1354)
..+.+ ++|+++ +.+++++.||.|++||+.+++ ++..+. .|. ..|+++ .++|++++|++|+.|++
T Consensus 185 ~~~~~----v~~s~d-g~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~-~~V~~l-~~spdg~~l~sgs~D~t~~ 256 (393)
T d1sq9a_ 185 QFATS----VDISER-GLIATGFNNGTVQISELSTLR-PLYNFESQHSMINNS-NSIRSV-KFSPQGSLLAIAHDSNSFG 256 (393)
T ss_dssp CCCCE----EEECTT-SEEEEECTTSEEEEEETTTTE-EEEEEECCC---CCC-CCEEEE-EECSSTTEEEEEEEETTEE
T ss_pred CCEEE----EEECCC-CEEEEEECCCCEEEEEECCCC-CCCCCCCCCCCCCCC-CEEEEC-CCCCCCCEEEEECCCCCCC
T ss_conf 86789----997899-989999389829998602332-110000111112425-638770-0466532011242898842
Q ss_pred -EEEEECCCCCEEEEEEC----------CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCC
Q ss_conf -99998779972267416----------7887888859999922999999999977992999967899721799915799
Q 000681 1210 -VRLYDVRTPDMLVCSTR----------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1278 (1354)
Q Consensus 1210 -IrIwDlrs~~~~~~~~~----------~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~ 1278 (1354)
|++||+.+++. ...+. ...+|...|++++|+|+ +++|++|+.|++|++||++++ +++.++.+|.+
T Consensus 257 ~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd--~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~ 332 (393)
T d1sq9a_ 257 CITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS--GETLCSAGWDGKLRFWDVKTK-ERITTLNMHCD 332 (393)
T ss_dssp EEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT-EEEEEEECCGG
T ss_pred EEEECCCCCCEE-EEEECCCCCCCCCEEEEECCCCCEEEECCCCC--CCEEEEECCCCEEEEEECCCC-CEEEEECCCCC
T ss_conf 100103532134-44311566664310232023586660013898--880698779998999999999-79999988687
Q ss_pred CEE----EEEECCCCCEEEEEE
Q ss_conf 858----999927999899996
Q 000681 1279 SLS----ALAVHRHAPIIASGS 1296 (1354)
Q Consensus 1279 ~It----sLafspdg~~Lasgs 1296 (1354)
.|. .++|++++..+++++
T Consensus 333 ~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 333 DIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCCCCCEEEECCCCCEEEECC
T ss_conf 6137734899999999999831
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3e-22 Score=174.39 Aligned_cols=254 Identities=18% Similarity=0.325 Sum_probs=197.0
Q ss_pred CCCCCEEEEEECCCCEEEEECCCC----------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 889862798307993999858999----------9837999958999999997899499998799936789627999999
Q 000681 1018 SCNSFDLAVSKLNNPIACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK 1087 (1354)
Q Consensus 1018 ~~~~~~L~~s~~d~~I~iWd~~~~----------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~ 1087 (1354)
+.++..+++++.|+.|++||..++ ..|+++.| ++++|++|+.|+.|++|+...+........+. .
T Consensus 22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~---~ 96 (293)
T d1p22a2 22 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC---E 96 (293)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC---S
T ss_pred EECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC---C
T ss_conf 876999999928993999999999199999267787763423--63002100111011000002464100111111---0
Q ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 86999998608998999996898099998667778504884010245899971125037999359994999978981999
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1167 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~I 1167 (1354)
.... + ......++++..++.+++|+.......... ..+..|...+.. ..+ ....+++++.|+.|++
T Consensus 97 ~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~----~~~--~~~~~~~~s~d~~i~~ 162 (293)
T d1p22a2 97 AVLH--L--RFNNGMMVTCSKDRSIAVWDMASPTDITLR----RVLVGHRAAVNV----VDF--DDKYIVSASGDRTIKV 162 (293)
T ss_dssp CEEE--E--ECCTTEEEEEETTSCEEEEECSSSSCCEEE----EEECCCSSCEEE----EEE--ETTEEEEEETTSEEEE
T ss_pred CCCC--C--CCCCCCEEECCCCCCEEEEECCCCCCCCCC----CCCCCCCCCCCC----CEE--CCCCCCCCCCCCCEEE
T ss_conf 0001--1--111100000135663068613445444212----100011354311----000--0022011069986041
Q ss_pred EECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCC
Q ss_conf 98888851345424999998279999749999999998899099998779972267416788788885999992299999
Q 000681 1168 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1247 (1354)
Q Consensus 1168 WDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~ 1247 (1354)
||.++.+ .+..+.++... +..+ .+ ++..+++++.||.|++||+++.. ...... ++...+.. +.++ +.
T Consensus 163 ~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~v~~--~~~~--~~ 229 (293)
T d1p22a2 163 WNTSTCE-FVRTLNGHKRG-IACL-QY--RDRLVVSGSSDNTIRLWDIECGA-CLRVLE---GHEELVRC--IRFD--NK 229 (293)
T ss_dssp EETTTCC-EEEEEECCSSC-EEEE-EE--ETTEEEEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEE--EECC--SS
T ss_pred ECCCCCC-EEEEECCCCCC-CCCC-CC--CCCEEEEECCCCEEEEEECCCCE-EEEEEC---CCCEEEEE--CCCC--CE
T ss_conf 0078883-88997155445-3221-68--98758876589989998665561-466521---43100000--1454--10
Q ss_pred EEEEEECCCCEEEEECCCC--------CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9999977992999967899--------721799915799858999927999899996899199995
Q 000681 1248 KIVSASQAGDIQFLDIRNH--------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1305 (1354)
Q Consensus 1248 ~Lvsgs~DG~I~IWDi~~~--------~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd 1305 (1354)
.|++|+.||.|++||+... ..++..+.+|.+.|++++|+ +.+|++++.||.|++||
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 79998679979999888886444567754557845889988999971--99999992299899959
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.3e-23 Score=182.51 Aligned_cols=304 Identities=9% Similarity=0.017 Sum_probs=187.0
Q ss_pred EEECCC-CCCEEEEEECCCCEEEEECCCC--------CCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEEECC
Q ss_conf 000288-9862798307993999858999--------9837999958999999997899--4999987999367896279
Q 000681 1014 KCQRSC-NSFDLAVSKLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNH 1082 (1354)
Q Consensus 1014 ~~q~~~-~~~~L~~s~~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latgs~Dg--~I~IWd~~tg~~l~~l~~h 1082 (1354)
..++++ ++..++... .+.+.+|+...+ ..|+++.|+||+++|++++.++ .|++|+.++++. ..+..|
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~ 84 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEEN 84 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCC
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECC
T ss_conf 0514688999999998-99699998999948991699988889998999999999928998999998999948-875089
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE--
Q ss_conf 999998699999860899899999689809999866777850488401024589997112503799935999499997--
Q 000681 1083 DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-- 1160 (1354)
Q Consensus 1083 ~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-- 1160 (1354)
. ..|.++.| ++++.+|++++.++.+++|+... +.... .+..+...+.+ +.|++++..++.+.
T Consensus 85 ~---~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~----~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 85 L---GNVFAMGV--DRNGKFAVVANDRFEIMTVDLET--GKPTV-----IERSREAMITD----FTISDNSRFIAYGFPL 148 (360)
T ss_dssp C---CSEEEEEE--CTTSSEEEEEETTSEEEEEETTT--CCEEE-----EEECSSSCCCC----EEECTTSCEEEEEEEE
T ss_pred C---CEEEEEEE--CCCCCCCCEECCCCCCCCCCCCC--CCEEE-----EEECCCCCCCC----HHHCCCEEEEEEECCC
T ss_conf 7---12774121--14543210001111100000122--21000-----00013552023----0121322566521233
Q ss_pred --------CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---CCCC
Q ss_conf --------89819999888885134542499999827999974999999999889909999877997226741---6788
Q 000681 1161 --------EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST---RPHT 1229 (1354)
Q Consensus 1161 --------~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~---~~~~ 1229 (1354)
.++.+++||..+++ ... +..+.. .+..+ .++++|+.+++++.++.+++||........... ....
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~~~-~~~-~~~~~~-~~~~~-~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~ 224 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEGRK-IFA-ATTENS-HDYAP-AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE-EEE-CSCSSS-BEEEE-EECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEE
T ss_pred CCCCEEECCCCCEEEECCCCCC-EEE-ECCCCC-CCCCC-CCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEE
T ss_conf 1211000256542663045571-353-035432-21100-1257799999995998557533354402320364117985
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCC-----CEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC---EEEEEECCCCE
Q ss_conf 788885999992299999999997799-----2999967899721799915799858999927999---89999689919
Q 000681 1230 QQVERVVGISFQPGLDPAKIVSASQAG-----DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP---IIASGSAKQLI 1301 (1354)
Q Consensus 1230 ~h~~~I~si~fsp~~~g~~Lvsgs~DG-----~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~---~Lasgs~Dg~I 1301 (1354)
.+......+.++++ +..++++..+. .+..++...+ ....+..+.+.+..+.+...+. ++++++.++.|
T Consensus 225 ~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 300 (360)
T d1k32a3 225 LIPGSPNPTKLVPR--SMTSEAGEYDLNDMYKRSSPINVDPG--DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300 (360)
T ss_dssp SSTTCCCGGGCCCG--GGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred CCCCCCCCCEECCC--CCCCCCCCEEECCCCCCEEECCCCCC--CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 24696012068777--67155311365266540010124767--526754138985699997359970699964899879
Q ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 99957993478982557864445678749999944997999998898099919
Q 000681 1302 KVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1302 ~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
++||..+..+..+. +.|.+++|+|||++|++++.||.|++|+
T Consensus 301 ~~~d~~~~~~~~~~-----------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 301 LKYDVKTRKVTEVK-----------NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp EEEETTTCCEEEEE-----------EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEECCCCEEEEEC-----------CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 99979997498864-----------8868799999898999997899499999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.6e-23 Score=181.15 Aligned_cols=285 Identities=12% Similarity=0.088 Sum_probs=208.9
Q ss_pred HHHEEECCCCCCEEEEEECCCCEEEEECCCC-------------CCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEE
Q ss_conf 3210002889862798307993999858999-------------9837999958999-9999978994999987999367
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNNPIACWDTRFE-------------KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLL 1076 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~-------------~~I~sL~fspdg~-~Latgs~Dg~I~IWd~~tg~~l 1076 (1354)
.|...++++++..|++++.|+.|++||...+ ..|.+++|++++. +|++|+.|+.|++|+...+...
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCCCCC
T ss_conf 78889995899999999799929999756998636898855899988999995899978998126531145420443200
Q ss_pred EEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 89627999999869999986089989999968980999986677785048840102458999711250379993599949
Q 000681 1077 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1156 (1354)
Q Consensus 1077 ~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~L 1156 (1354)
.....+. .......+. ..+...+++++.++.+++||........... .....+...... ....+......+
T Consensus 93 ~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 93 QALTNNE---ANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAV---KNLNSNNTKVKN--KIFTMDTNSSRL 163 (342)
T ss_dssp EECBSCC---CCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEE---EESCSSSSSSCC--CEEEEEECSSEE
T ss_pred CCCCCCC---CCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCEEEE---CCCCCCCCCCEE--EEEEEECCCCCE
T ss_conf 0001111---111111111-1111111110122211102023444330230---002430012000--001000168702
Q ss_pred EEEECCCEEEEEECCCCCEEEEEE--CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE--------E---E
Q ss_conf 999789819999888885134542--49999982799997499999999988990999987799722--------6---7
Q 000681 1157 YASGEVSSIMLWDLEKEQQMVNPI--PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML--------V---C 1223 (1354)
Q Consensus 1157 lsag~Dg~I~IWDl~t~~~~i~~l--~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~--------~---~ 1223 (1354)
++++.|+.|++||+.... ..... .......+.+....+.++..+++++.||.+.+|+....... . .
T Consensus 164 ~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCE-DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEEESTTEEEEEESSCCT-TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEECCCCCEEEEECCCCC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEE
T ss_conf 465179847887605676-3411121025422101467636999878865489959999805986401112351256555
Q ss_pred EECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 41678878888599999229999999999779929999678997217999157998589999279998999968991999
Q 000681 1224 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1224 ~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
......+|...+.+++|+|+ +.+|++|+.||.|++||++++ +.+..+..+ .....++|++++.++++++.|+.+++
T Consensus 243 ~~~~~~~~~~~v~~l~~sp~--~~~lasg~~Dg~v~vWD~~~~-~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~ 318 (342)
T d1yfqa_ 243 LNLKDTNLAYPVNSIEFSPR--HKFLYTAGSDGIISCWNLQTR-KKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKT 318 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTT--TCCEEEEETTSCEEEEETTTT-EEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred ECCCCCCCCCCCEEEEECCC--CCEEEEECCCCEEEEEECCCC-CEEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 31477762354315996698--447999879998999999989-498870589-99879999947999999991992788
Q ss_pred EECCCC
Q ss_conf 957993
Q 000681 1304 FSLEGE 1309 (1354)
Q Consensus 1304 wd~~g~ 1309 (1354)
|....+
T Consensus 319 ~~~~~~ 324 (342)
T d1yfqa_ 319 NAAIDQ 324 (342)
T ss_dssp CSSSCT
T ss_pred EEEECC
T ss_conf 301278
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.5e-22 Score=175.06 Aligned_cols=249 Identities=13% Similarity=0.183 Sum_probs=190.4
Q ss_pred EEEEECCCCEEEEECCCC-----CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf 798307993999858999-----983799995899999999789949999879993678962799999986999998608
Q 000681 1024 LAVSKLNNPIACWDTRFE-----KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL 1098 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~-----~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~ 1098 (1354)
+++++.|+.|++||...+ ..|.++.++++. .+++++.|+++++|+.... . .. ..+..+.+ .+
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~------~-~~---~~~~~~~~--~~ 90 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH------E-FG---SQPKVASA--NN 90 (287)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE------E-CS---SCEEEEEE--CS
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCC------C-CC---CCEEEEEE--CC
T ss_conf 78984899199998999888877878999965997-2898861012221111111------1-12---21014664--16
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEE
Q ss_conf 9989999968980999986677785048840102458999711250379993599949999789-819999888885134
Q 000681 1099 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMV 1177 (1354)
Q Consensus 1099 d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~D-g~I~IWDl~t~~~~i 1177 (1354)
++..+++ +.++.+.+|+..+ +.. + ..+... .. . ..+++++..+++++.+ +.+++|++.... ..
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~--~~~--~---~~~~~~-~~--~----~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~ 154 (287)
T d1pgua2 91 DGFTAVL-TNDDDLLILQSFT--GDI--I---KSVRLN-SP--G----SAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VS 154 (287)
T ss_dssp SSEEEEE-ETTSEEEEEETTT--CCE--E---EEEECS-SC--E----EEEEECSSEEEEEETTTSCEEEEETTEEE-EE
T ss_pred CCCEEEE-EECCCCEEEECCC--EEE--E---EECCCC-CE--E----EEEECCCCCEEEECCCCCEEEEEECCCCC-EE
T ss_conf 7856999-6033210000110--035--4---310122-20--3----56521475111000221000210001221-00
Q ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC--------CCCCEE
Q ss_conf 542499999827999974999999999889909999877997226741678878888599999229--------999999
Q 000681 1178 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--------LDPAKI 1249 (1354)
Q Consensus 1178 ~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~--------~~g~~L 1249 (1354)
..+...+...++++ .+++++.++++|+.||.|++||..++..... ...+|...|.+++|+|. .++.++
T Consensus 155 ~~~~~~~~~~v~~~-~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l 230 (287)
T d1pgua2 155 FDLKTPLRAKPSYI-SISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFRTSKINAISWKPAEKGANEEEIEEDLV 230 (287)
T ss_dssp EECSSCCSSCEEEE-EECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred EEEEECCCCCEEEE-EECCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCEEEECCCCCCCCCCCCCCCEE
T ss_conf 01210247853699-9516765211011111100000023321100---0111111110000013654100126788702
Q ss_pred EEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 999779929999678997217999157998589999279998999968991999957
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1250 vsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~ 1306 (1354)
++|+.|+.|++||++.....+..+.+|.+.|+++.|++++ .+++++.|+.|++|++
T Consensus 231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 7664999599988899975899927878985899998999-8999979992999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=1.7e-20 Score=161.64 Aligned_cols=317 Identities=8% Similarity=0.006 Sum_probs=200.5
Q ss_pred EEEEECCCCEEEEECCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE--EECCCCCCCCEEEE
Q ss_conf 798307993999858999---------9837999958999999997899499998799936789--62799999986999
Q 000681 1024 LAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKL 1092 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~--l~~h~~~~~~ItsL 1092 (1354)
+++...++.|.+||..++ ..+..++|+|||+++++++.|+.|++||+.+++.... +.....+...+.++
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEE
T ss_conf 99975999799999999959999968998038999899999999958998899975688604899986788876458850
Q ss_pred EEEEECCCCEEEEE-ECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEEEECCCCEEEEEE-CCC
Q ss_conf 99860899899999-689809999866777850488401024589997112-------503799935999499997-898
Q 000681 1093 CLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC-------SNVVVDWQQQSGYLYASG-EVS 1163 (1354)
Q Consensus 1093 ~f~~s~d~~~Lvtg-s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s-------i~~~i~~sp~~~~Llsag-~Dg 1163 (1354)
.| ++|+++++++ ..++.+++||..+ +..... ...+...+.. ....+..++++..++... ..+
T Consensus 115 ~~--spDG~~l~v~~~~~~~v~i~d~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~ 185 (426)
T d1hzua2 115 FK--GYEDRYTIAGAYWPPQFAIMDGET--LEPKQI-----VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 185 (426)
T ss_dssp ST--TCTTTEEEEEEEESSEEEEEETTT--CCEEEE-----EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred EE--CCCCCEEEEEECCCCEEEEECCCC--CCEEEE-----EECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 02--688987999635897699985776--412578-----622677736436427885038998787878888527897
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 199998888851345424999998279999749999999998-8990999987799722674167887888859999922
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242 (1354)
Q Consensus 1164 ~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs-~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp 1242 (1354)
.+.+++..... ............+..+ .+.+++++++++. .+..+.+++..+++. ....... .+........+..
T Consensus 186 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~g~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 261 (426)
T d1hzua2 186 KVLLVNYKDID-NLTVTSIGAAPFLADG-GWDSSHRYFMTAANNSNKVAVIDSKDRRL-SALVDVG-KTPHPGRGANFVH 261 (426)
T ss_dssp EEEEEECSSSS-SCEEEEEECCSSEEEE-EECTTSCEEEEEETTCSEEEEEETTTTEE-EEEEECS-SCCCCSCCEEEEE
T ss_pred EEEEEEECCCC-CEEEEEECCCCCCEEE-EECCCCCEEEEEEECCCCEEEEECCCCCE-EEEECCC-CCCCCCCEEEEEC
T ss_conf 69999924665-2045775667753761-37788867886420110000000255627-8875058-7444342011006
Q ss_pred CCCCCEE-EEEECCCCEEEEECCCCC------CCEEEEECCCCCEEEEEECCCCCEEEE-------EECCCCEEEEEC-C
Q ss_conf 9999999-999779929999678997------217999157998589999279998999-------968991999957-9
Q 000681 1243 GLDPAKI-VSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRHAPIIAS-------GSAKQLIKVFSL-E 1307 (1354)
Q Consensus 1243 ~~~g~~L-vsgs~DG~I~IWDi~~~~------~~i~~l~~h~~~ItsLafspdg~~Las-------gs~Dg~I~Iwd~-~ 1307 (1354)
...+... +..+.|+.+.+|+..... +...++.+|...+..++|+|++.++++ ++.|++|+|||+ +
T Consensus 262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 98774577415789659885225665203302586898668876367874899861888506798802288799998987
Q ss_pred CCEEEEEECCCCCC--CCCCCCCEEEEEEECCCCEEEEE-----ECCCEEEECC
Q ss_conf 93478982557864--44567874999994499799999-----8898099919
Q 000681 1308 GEQLGTIRYHHPSF--MAQKIGSVNCLTFHPYQVLLAAG-----SADACVSIHS 1354 (1354)
Q Consensus 1308 g~~l~~i~~~h~~f--l~~~~~~V~sLafspdg~~Lasg-----s~Dg~I~IWd 1354 (1354)
++...++.. +... +..+...+..++|+|||++++.+ +.||.|+|||
T Consensus 342 ~~~~~~~~~-~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 342 LDAKYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp TTSCCEEEC-HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred CCCCEEEEC-CCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 876708950-21102567788518987999999999999724888898299999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=1.5e-21 Score=169.29 Aligned_cols=278 Identities=13% Similarity=0.020 Sum_probs=191.2
Q ss_pred HHHEEECCCCCCEEEEEECCC--CEEEEECCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 321000288986279830799--3999858999---------98379999589999999978994999987999367896
Q 000681 1011 HIAKCQRSCNSFDLAVSKLNN--PIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1079 (1354)
Q Consensus 1011 ~i~~~q~~~~~~~L~~s~~d~--~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l 1079 (1354)
.+....+++++..+++++.++ .+.+||.+.+ ..+.+++|+|++++|++++.++.+++|+.++++....+
T Consensus 44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 123 (360)
T d1k32a3 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123 (360)
T ss_dssp CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEE
T ss_conf 88889998999999999928998999998999948875089712774121145432100011111000001222100000
Q ss_pred ECCCCCCCCEEEEEEEEECCCCEEEEEE----------CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf 2799999986999998608998999996----------898099998667778504884010245899971125037999
Q 000681 1080 DNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW 1149 (1354)
Q Consensus 1080 ~~h~~~~~~ItsL~f~~s~d~~~Lvtgs----------~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~ 1149 (1354)
..+. ..+.++.| ++++.+|+.+. .++.+++|+..+ ++.. .+..+...+.. +.|
T Consensus 124 ~~~~---~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~--~~~~------~~~~~~~~~~~----~~~ 186 (360)
T d1k32a3 124 RSRE---AMITDFTI--SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RKIF------AATTENSHDYA----PAF 186 (360)
T ss_dssp ECSS---SCCCCEEE--CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TEEE------ECSCSSSBEEE----EEE
T ss_pred ECCC---CCCCCHHH--CCCEEEEEEECCCCCCCEEECCCCCEEEECCCC--CCEE------EECCCCCCCCC----CCC
T ss_conf 0135---52023012--132256652123312110002565426630455--7135------30354322110----012
Q ss_pred ECCCCEEEEEECCCEEEEEECCCCCEE-------EEEECCCCCCCEEEEEEECCCCCEEEEEECCCE---EEEEECCCCC
Q ss_conf 359994999978981999988888513-------454249999982799997499999999988990---9999877997
Q 000681 1150 QQQSGYLYASGEVSSIMLWDLEKEQQM-------VNPIPSSSDCSISALTASQVHGGQLAAGFVDGS---VRLYDVRTPD 1219 (1354)
Q Consensus 1150 sp~~~~Llsag~Dg~I~IWDl~t~~~~-------i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGs---IrIwDlrs~~ 1219 (1354)
++++..|+.++.++.+++||..... . ...+..+... +..+ .+.+++..+..+..+.. .++|.+....
T Consensus 187 spdg~~l~~~s~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T d1k32a3 187 DADSKNLYYLSYRSLDPSPDRVVLN-FSFEVVSKPFVIPLIPGS-PNPT-KLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263 (360)
T ss_dssp CTTSCEEEEEESCCCCCEECSSSSC-EECCSCBEEEEEESSTTC-CCGG-GCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred CCCCCEEEEEECCCCEECCCCCCCC-EEECCCCCEEEEECCCCC-CCCC-EECCCCCCCCCCCEEECCCCCCEEECCCCC
T ss_conf 5779999999599855753335440-232036411798524696-0120-687776715531136526654001012476
Q ss_pred EEEEEECCCCCCCCCEEEEEEECC-CCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 226741678878888599999229-9999999997799299996789972179991579985899992799989999689
Q 000681 1220 MLVCSTRPHTQQVERVVGISFQPG-LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1298 (1354)
Q Consensus 1220 ~~~~~~~~~~~h~~~I~si~fsp~-~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~D 1298 (1354)
.......... ..+..+.+... ....++++++.++.|++||+.+++ ... |.+.|.+++|+|||++|++++.|
T Consensus 264 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~---~~~~v~~~~~SpDG~~l~~~~~D 335 (360)
T d1k32a3 264 GDYRMIIPLE---SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK--VTE---VKNNLTDLRLSADRKTVMVRKDD 335 (360)
T ss_dssp BCEEEEEECS---SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC--EEE---EEEEEEEEEECTTSCEEEEEETT
T ss_pred CCEEEEEECC---CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCE--EEE---ECCCCCEEEECCCCCEEEEEECC
T ss_conf 7526754138---985699997359970699964899879999799974--988---64886879999989899999789
Q ss_pred CCEEEEEC-CCCEEEEEEC
Q ss_conf 91999957-9934789825
Q 000681 1299 QLIKVFSL-EGEQLGTIRY 1316 (1354)
Q Consensus 1299 g~I~Iwd~-~g~~l~~i~~ 1316 (1354)
|.|++|+. +++...++..
T Consensus 336 g~i~v~d~~~~~~~~~~~~ 354 (360)
T d1k32a3 336 GKIYTFPLEKPEDERTVET 354 (360)
T ss_dssp SCEEEEESSCTTSCEECCC
T ss_pred CEEEEEECCCCCCCEEEEE
T ss_conf 9499999999985459984
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=2.1e-20 Score=160.99 Aligned_cols=301 Identities=6% Similarity=-0.052 Sum_probs=183.8
Q ss_pred EEEEECCCCEEEEECCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEE
Q ss_conf 798307993999858999---------983799995899999999789949999879993--678962799999986999
Q 000681 1024 LAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKL 1092 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~--~l~~l~~h~~~~~~ItsL 1092 (1354)
+++.+.++.+.+||..++ ..+..++|+|||+++++++.|+.|++||+.+++ .+..+.....+.+.+.+.
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEC
T ss_conf 99976999799998999839999737997137998899999999828999789981089812889984488987769843
Q ss_pred EEEEECCCCEE-EEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCC-------CCEEEEEEECCCCEEEEE-ECCC
Q ss_conf 99860899899-99968980999986677785048840102458999711-------250379993599949999-7898
Q 000681 1093 CLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR-------CSNVVVDWQQQSGYLYAS-GEVS 1163 (1354)
Q Consensus 1093 ~f~~s~d~~~L-vtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~-------si~~~i~~sp~~~~Llsa-g~Dg 1163 (1354)
.| ++|+++| ++++.++.|++||..+ ++.... +..+...+. .-...+.+++++..++++ ..++
T Consensus 115 ~~--SpDG~~l~vs~~~~~~v~i~d~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 115 ME--GWEDKYAIAGAYWPPQYVIMDGET--LEPKKI-----QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp ST--TCTTTEEEEEEEETTEEEEEETTT--CCEEEE-----EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CC--CCCCCEEEEECCCCCEEEEEECCC--CCCEEE-----ECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 21--888888999817898279990765--542254-----024776435220168885058998789998999981688
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEECCC--CCCCCCEEEEEE
Q ss_conf 1999988888513454249999982799997499999999988-9909999877997226741678--878888599999
Q 000681 1164 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPH--TQQVERVVGISF 1240 (1354)
Q Consensus 1164 ~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~-DGsIrIwDlrs~~~~~~~~~~~--~~h~~~I~si~f 1240 (1354)
.|.+||..+.+ .........+..+..+ .++++++++++++. ++.+.++|....+. ....... ..|........+
T Consensus 186 ~i~~~d~~~~~-~~~~~~i~~g~~~~~~-~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~ 262 (432)
T d1qksa2 186 KILLVDYTDLN-NLKTTEISAERFLHDG-GLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVH 262 (432)
T ss_dssp EEEEEETTCSS-EEEEEEEECCSSEEEE-EECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEEEE
T ss_pred EEEEEECCCCC-CCEEEEECCCCCCCCC-EECCCCCEEEEECCCCCEEEEEECCCCEE-EEEECCCCCCCCCCCCCCEEC
T ss_conf 29999843787-5227998336754265-38898879999516663677761445268-887214862245676641014
Q ss_pred ECCCCCCEEEEEE-CCCCEEEEECCCCCCCEEEEECCCCCEEEEEECC--------------------------------
Q ss_conf 2299999999997-7992999967899721799915799858999927--------------------------------
Q 000681 1241 QPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR-------------------------------- 1287 (1354)
Q Consensus 1241 sp~~~g~~Lvsgs-~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafsp-------------------------------- 1287 (1354)
... +....+.. .++.|.+|+..... ...|...+....+.+
T Consensus 263 ~~~--g~~~~~~~lg~~~v~~~~~~~~~-----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv 335 (432)
T d1qksa2 263 PTF--GPVWATSHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 335 (432)
T ss_dssp TTT--EEEEEEEBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred CCC--CCEECCCCCCCCEEEECCCCCCC-----CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEE
T ss_conf 898--83102135688358762456655-----54656577799886899768887268864102112678887703599
Q ss_pred ---CCCEEEEEECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEE-----CCCEEEECC
Q ss_conf ---99989999689919999579-93478982557864445678749999944997999998-----898099919
Q 000681 1288 ---HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS-----ADACVSIHS 1354 (1354)
Q Consensus 1288 ---dg~~Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs-----~Dg~I~IWd 1354 (1354)
++..+++++.|+.+++|+.. +.. +..+...+.+++|+|||++++.+. .+|.|.|||
T Consensus 336 ~vpDg~~la~~s~d~~~k~w~~~~~~~-----------l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 336 AVFDIKAMTGDGSDPEFKTLPIAEWAG-----------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EEEEGGGCCCSSSCCCEEEECHHHHHT-----------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEECHHHCCCCCCCCEEECCCCCCCC-----------CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 999624610455678448633434444-----------57899868976798999999999704888888689999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=4.8e-17 Score=136.48 Aligned_cols=264 Identities=11% Similarity=0.156 Sum_probs=193.4
Q ss_pred CEEEEEECCCCEEEEECCCC---------CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEE
Q ss_conf 62798307993999858999---------9837999958999999-9978994999987999367896279999998699
Q 000681 1022 FDLAVSKLNNPIACWDTRFE---------KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISK 1091 (1354)
Q Consensus 1022 ~~L~~s~~d~~I~iWd~~~~---------~~I~sL~fspdg~~La-tgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~Its 1091 (1354)
|-.++...++.|.+||.+++ ..+..++|+|++++|+ ++..++.|++||..+++.+..+..+. .+..
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----~~~~ 78 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQG 78 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC----CCCC
T ss_conf 999997899989999999995999998899836999928989999997899989999999894103200024----6431
Q ss_pred EEEEEECCCCEEE-EEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEE
Q ss_conf 9998608998999-99689809999866777850488401024589997112503799935999499997-898199998
Q 000681 1092 LCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWD 1169 (1354)
Q Consensus 1092 L~f~~s~d~~~Lv-tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWD 1169 (1354)
+.| ++++..++ ++..++.+.+|+..+ +. .. ..+.. .....+ +.+++++..+++++ .++.+.+|+
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~---~~~~~-~~~~~~----~~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 79 VAV--SPDGKQVYVTNMASSTLSVIDTTS--NT--VA---GTVKT-GKSPLG----LALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp EEE--CTTSSEEEEEETTTTEEEEEETTT--TE--EE---EEEEC-SSSEEE----EEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCC--CCCCCCCCCCCCCCCEEEECCCCC--CE--EE---EECCC-CCCCEE----EEEECCCCEEEEEECCCCCEEEEE
T ss_conf 100--011111111111110011001243--02--43---20244-444237----876058971554201111001100
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCE
Q ss_conf 88885134542499999827999974999999999889-90999987799722674167887888859999922999999
Q 000681 1170 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1170 l~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~D-GsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~ 1248 (1354)
..+.. .+..+..+.. +..+ .+.+++..++++..+ +.+.+|+..... ........ .....+.++++ +..
T Consensus 145 ~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~--g~~ 213 (301)
T d1l0qa2 145 TVTKA-VINTVSVGRS--PKGI-AVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVKVE----AAPSGIAVNPE--GTK 213 (301)
T ss_dssp TTTTE-EEEEEECCSS--EEEE-EECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS----SEEEEEEECTT--SSE
T ss_pred CCCCC-EEEECCCCCC--CEEE-EEECCCCCEEEECCCCCCCCCCCCCCEE-EEECCCCC----CCCCEEECCCC--CCC
T ss_conf 01463-0353156788--4288-8604654013101211111111111000-11101335----77503110111--101
Q ss_pred EEEEEC---CCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEE-EEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 999977---99299996789972179991579985899992799989-9996899199995-79934789825
Q 000681 1249 IVSASQ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1249 Lvsgs~---DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~L-asgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
++.++. ++.|++||..++ +.+..+..+ ..+.+++|+|+|+++ ++++.|+.|++|| .+++.+.++..
T Consensus 214 ~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 214 AYVTNVDKYFNTVSMIDTGTN-KITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEEECSSCCEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCCCEEEEEEEEECCCC-EEEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf 111002100002323656998-199998489-98779999189899999989999699999999959999968
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=8.1e-17 Score=134.81 Aligned_cols=259 Identities=13% Similarity=0.149 Sum_probs=191.5
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCCEEEEEEECCC
Q ss_conf 9999789949999879993678962799999986999998608998999-996898099998667778504884010245
Q 000681 1056 VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1134 (1354)
Q Consensus 1056 Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lv-tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1134 (1354)
.++++.++.|.+||.++++.+.++.... ....++| ++|+++|+ +++.++.|++||+.+ + +.+ +.+.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~----~p~~va~--spdG~~l~v~~~~~~~i~v~d~~t--~--~~~---~~~~ 71 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGS----NPMGAVI--SPDGTKVYVANAHSNDVSIIDTAT--N--NVI---ATVP 71 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS----SEEEEEE--CTTSSEEEEEEGGGTEEEEEETTT--T--EEE---EEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECCC----CCEEEEE--ECCCCEEEEEECCCCEEEEEECCC--C--CEE---EEEE
T ss_conf 9997899989999999995999998899----8369999--289899999978999899999998--9--410---3200
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEE-EEECCCEEEE
Q ss_conf 89997112503799935999499997-898199998888851345424999998279999749999999-9988990999
Q 000681 1135 GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGSVRL 1212 (1354)
Q Consensus 1135 ~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lv-sgs~DGsIrI 1212 (1354)
.+. .... +.|++++..+++++ .++.+.+|+..+++ ....+..+. ...++ .+.+++..++ ++..++.+.+
T Consensus 72 ~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~dg~~~~~~~~~~~~~~~ 142 (301)
T d1l0qa2 72 AGS-SPQG----VAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTGK--SPLGL-ALSPDGKKLYVTNNGDKTVSV 142 (301)
T ss_dssp CSS-SEEE----EEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSS--SEEEE-EECTTSSEEEEEETTTTEEEE
T ss_pred CCC-CCCC----CCCCCCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCC--CCEEE-EEECCCCEEEEEECCCCCEEE
T ss_conf 024-6431----10001111111111111001100124302-432024444--42378-760589715542011110011
Q ss_pred EECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCE
Q ss_conf 9877997226741678878888599999229999999999779-929999678997217999157998589999279998
Q 000681 1213 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1291 (1354)
Q Consensus 1213 wDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~D-G~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~ 1291 (1354)
|+..+.. ........ ..+..+.++++ +..+++++.+ +.+.+|+.... ........ ......+++++++..
T Consensus 143 ~~~~~~~-~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~g~~ 213 (301)
T d1l0qa2 143 INTVTKA-VINTVSVG----RSPKGIAVTPD--GTKVYVANFDSMSISVIDTVTN-SVIDTVKV-EAAPSGIAVNPEGTK 213 (301)
T ss_dssp EETTTTE-EEEEEECC----SSEEEEEECTT--SSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSEEEEEEECTTSSE
T ss_pred EECCCCC-EEEECCCC----CCCEEEEEECC--CCCEEEECCCCCCCCCCCCCCE-EEEECCCC-CCCCCEEECCCCCCC
T ss_conf 0001463-03531567----88428886046--5401310121111111111100-01110133-577503110111101
Q ss_pred EEEEEC---CCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE-EEEECCCEEEECC
Q ss_conf 999968---991999957-99347898255786444567874999994499799-9998898099919
Q 000681 1292 IASGSA---KQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIHS 1354 (1354)
Q Consensus 1292 Lasgs~---Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~L-asgs~Dg~I~IWd 1354 (1354)
++.++. ++.|++||. +++.+..+.. + ..+.+++|+|+|++| ++++.|+.|.+||
T Consensus 214 ~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~--------~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 214 AYVTNVDKYFNTVSMIDTGTNKITARIPV-G--------PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEEECSSCCEEEEEETTTTEEEEEEEC-C--------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEECC-C--------CCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 11100210000232365699819999848-9--------98779999189899999989999699999
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=8.2e-18 Score=142.07 Aligned_cols=289 Identities=11% Similarity=0.083 Sum_probs=186.3
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCCC-----------CE----EEEEECCCCCEEEEE-ECCCCEEEEECCCCCE
Q ss_conf 2100028898627983079939998589999-----------83----799995899999999-7899499998799936
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFEK-----------GT----KTALLQPFSPIVVAA-DENERIKIWNYEEDTL 1075 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~~-----------~I----~sL~fspdg~~Latg-s~Dg~I~IWd~~tg~~ 1075 (1354)
.....+++++..+++++.++.+.+||..++. .. .++.|+|||++++++ ..++.+.+||..++..
T Consensus 64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~ 143 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143 (426)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE
T ss_conf 03899989999999995899889997568860489998678887645885002688987999635897699985776412
Q ss_pred EEEEECCCC--------CCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 789627999--------999869999986089989999968-98099998667778504884010245899971125037
Q 000681 1076 LNSFDNHDF--------PDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV 1146 (1354)
Q Consensus 1076 l~~l~~h~~--------~~~~ItsL~f~~s~d~~~Lvtgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~ 1146 (1354)
+.....+.. +......+.+ ++++..++.... .+.+.+++... .....+ ....+...+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~--s~d~~~~~~~~~~~~~i~~~~~~~--~~~~~~----~~~~~~~~~~~---- 211 (426)
T d1hzua2 144 KQIVSTRGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKD--IDNLTV----TSIGAAPFLAD---- 211 (426)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECSS--SSSCEE----EEEECCSSEEE----
T ss_pred EEEEECCCCCCCCEEECCCCCEEEEEE--CCCCCEEEEECCCCCEEEEEEECC--CCCEEE----EEECCCCCCEE----
T ss_conf 578622677736436427885038998--787878888527897699999246--652045----77566775376----
Q ss_pred EEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCCCEEE--EEECCCEEEEEECCCCCEE-
Q ss_conf 99935999499997-8981999988888513454249999-98279999749999999--9988990999987799722-
Q 000681 1147 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTASQVHGGQLA--AGFVDGSVRLYDVRTPDML- 1221 (1354)
Q Consensus 1147 i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~-~~VtsI~~~s~~g~~Lv--sgs~DGsIrIwDlrs~~~~- 1221 (1354)
+.+++++++++++. .+..+.+++..+++ .+..+..... ................. ....|+.+.+|+.......
T Consensus 212 ~~~~~~g~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEECTTSCEEEEEETTCSEEEEEETTTTE-EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred EEECCCCCEEEEEEECCCCEEEEECCCCC-EEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 13778886788642011000000025562-78875058744434201100698774577415789659885225665203
Q ss_pred --EEEECCCCCCCCCEEEEEEECCCCCCEEEE-------EECCCCEEEEECCCCCCCEEEEE---------CCCCCEEEE
Q ss_conf --674167887888859999922999999999-------97799299996789972179991---------579985899
Q 000681 1222 --VCSTRPHTQQVERVVGISFQPGLDPAKIVS-------ASQAGDIQFLDIRNHKDAYLTID---------AHRGSLSAL 1283 (1354)
Q Consensus 1222 --~~~~~~~~~h~~~I~si~fsp~~~g~~Lvs-------gs~DG~I~IWDi~~~~~~i~~l~---------~h~~~ItsL 1283 (1354)
........+|...+..++|+|+ +.++++ ++.+++|++||+.++ +...++. .+...+.++
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPd--g~~l~v~~~~~~s~~~~~tv~vwd~~t~-~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPK--SSHLYVDTTFNPDARISQSVAVFDLKNL-DAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTT--CSEEEECCTTCSSHHHHTCEEEEETTCT-TSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred CCCEEEEEEECCCCCEEEEECCCC--CCEEEEEECCCCCCCCCCEEEEEECCCC-CCCEEEECCCHHCCCCCCCCCEEEE
T ss_conf 302586898668876367874899--8618885067988022887999989878-7670895021102567788518987
Q ss_pred EECCCCCEEE-EE----ECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 9927999899-99----6899199995-79934789825
Q 000681 1284 AVHRHAPIIA-SG----SAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1284 afspdg~~La-sg----s~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
+|+|||+.++ ++ +.++.|+||| .+++....++.
T Consensus 368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 999999999999724888898299999998738999878
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.3e-17 Score=140.70 Aligned_cols=268 Identities=13% Similarity=0.125 Sum_probs=173.7
Q ss_pred EEEEEECCCCEEEEECCCC------------CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCC--CC
Q ss_conf 2798307993999858999------------9837999958999999-9978994999987999367896279999--99
Q 000681 1023 DLAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFP--DK 1087 (1354)
Q Consensus 1023 ~L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~La-tgs~Dg~I~IWd~~tg~~l~~l~~h~~~--~~ 1087 (1354)
.++++..++.|.+||.+++ ..+..++|+|||++++ +++.++.|.+||+.+++.+..+..+... +.
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 99997679989999999994999998778899823799999989999997899949999999992988872477731254
Q ss_pred CEEEEEEEEECCCCEEEEEEC------------CCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCE
Q ss_conf 869999986089989999968------------98099998667778504884010245899971125037999359994
Q 000681 1088 GISKLCLVNELDVSLLLVASC------------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1155 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs~------------DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~ 1155 (1354)
.+..+.| ++++.+++++.. ++.+.+|+..+ +.. . ..+. +...+.+ +.|++++..
T Consensus 83 ~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~--~---~~~~-~~~~~~~----~~~s~dg~~ 148 (337)
T d1pbyb_ 83 SLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSR--R---KAFE-APRQITM----LAWARDGSK 148 (337)
T ss_dssp CTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEE--E---EEEE-CCSSCCC----EEECTTSSC
T ss_pred CEEEEEE--CCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCC--CEE--E---EECC-CCCCCEE----EEECCCCCE
T ss_conf 0254898--68775799950477620342034555212035667--759--8---8414-5687218----998688888
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEE-----E----------------EEECCCCCEEEEEECCCEEEEEE
Q ss_conf 99997898199998888851345424999998279-----9----------------99749999999998899099998
Q 000681 1156 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA-----L----------------TASQVHGGQLAAGFVDGSVRLYD 1214 (1354)
Q Consensus 1156 Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~Vts-----I----------------~~~s~~g~~Lvsgs~DGsIrIwD 1214 (1354)
+++++.+ +.+||..+++ ....+..+....... . .....+......+..++.+.+||
T Consensus 149 l~~~~~~--~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 149 LYGLGRD--LHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEEESSS--EEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEECCC--CCEEEEECCC-EEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEE
T ss_conf 9997177--5056630372-788861477543311357763140146653124663244410366045403676179998
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 77997226741678878888599999229999999999779929999678997217999157998589999279998999
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1294 (1354)
Q Consensus 1215 lrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Las 1294 (1354)
...+........ .+...+..+.++++ +.+++.+ ++.|++||+.++ ..+..+. +...+.+++|+|+|.++++
T Consensus 226 ~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v 296 (337)
T d1pbyb_ 226 LETGEMAMREVR---IMDVFYFSTAVNPA--KTRAFGA--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp TTTCCEEEEEEE---ECSSCEEEEEECTT--SSEEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred CCCCCEEEEEEC---CCCCCEEEEEECCC--CEEEEEC--CCCEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf 688858889832---88750588874266--1399973--552899989889-6999974-8998899999789999999
Q ss_pred EECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 96899199995-79934789825
Q 000681 1295 GSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1295 gs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
++.|+.|++|| .+++.+.+++.
T Consensus 297 ~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 297 GGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ESBSSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCEEEEECCCCCEEEEEEC
T ss_conf 94999299999998769899988
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=4e-18 Score=144.36 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=40.6
Q ss_pred EEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCE
Q ss_conf 99779929999678997217999157998589999279998999968991999957-99347898255786444567874
Q 000681 1251 SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSV 1329 (1354)
Q Consensus 1251 sgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V 1329 (1354)
++..++.+.+||...+.........+...+..+.+++++..++.... +.|.+||. +++.+..+.. . ..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~--~-------~~~ 294 (346)
T d1jmxb_ 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL--D-------HTY 294 (346)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--S-------SCC
T ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECC--C-------CCE
T ss_conf 40478349999777883687876315660688897179978999429-8389998999939999749--9-------977
Q ss_pred EEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 9999944997999998898099919
Q 000681 1330 NCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1330 ~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
.+++|+|||.+|++++.|+.|++||
T Consensus 295 ~~va~s~DG~~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 295 YCVAFDKKGDKLYLGGTFNDLAVFN 319 (346)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 8999968999999994899299999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=2.1e-16 Score=131.84 Aligned_cols=277 Identities=10% Similarity=0.026 Sum_probs=173.5
Q ss_pred HHEEECCCCCCEEEEEECCCCEEEEECCCCC-----------CEEEE----EECCCCCEE-EEEECCCCEEEEECCCCCE
Q ss_conf 2100028898627983079939998589999-----------83799----995899999-9997899499998799936
Q 000681 1012 IAKCQRSCNSFDLAVSKLNNPIACWDTRFEK-----------GTKTA----LLQPFSPIV-VAADENERIKIWNYEEDTL 1075 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~d~~I~iWd~~~~~-----------~I~sL----~fspdg~~L-atgs~Dg~I~IWd~~tg~~ 1075 (1354)
.....+++++..++++..++.+.+||..++. ....+ .|+|||++| +++..++.|++||..+++.
T Consensus 64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~ 143 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 143 (432)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 13799889999999982899978998108981288998448898776984321888888999817898279990765542
Q ss_pred EEEEECCCC--------CCCCEEEEEEEEECCCCEE-EEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 789627999--------9998699999860899899-9996898099998667778504884010245899971125037
Q 000681 1076 LNSFDNHDF--------PDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV 1146 (1354)
Q Consensus 1076 l~~l~~h~~--------~~~~ItsL~f~~s~d~~~L-vtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~ 1146 (1354)
+..+..+.. +......+.+ ++++..+ ++...++.|.+|+..+ .+...+ ..+ .+......
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~--s~dg~~~~vs~~~~~~i~~~d~~~--~~~~~~---~~i-~~g~~~~~---- 211 (432)
T d1qksa2 144 KKIQSTRGMTYDEQEYHPEPRVAAILA--SHYRPEFIVNVKETGKILLVDYTD--LNNLKT---TEI-SAERFLHD---- 211 (432)
T ss_dssp EEEEECCEECTTTCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEETTC--SSEEEE---EEE-ECCSSEEE----
T ss_pred EEEECCCCCCCCCEECCCCCCEEEEEE--CCCCCEEEEEECCCCEEEEEECCC--CCCCEE---EEE-CCCCCCCC----
T ss_conf 254024776435220168885058998--789998999981688299998437--875227---998-33675426----
Q ss_pred EEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCC----CCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCE
Q ss_conf 99935999499997-898199998888851345424999----998279999749999999998-899099998779972
Q 000681 1147 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSS----DCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDM 1220 (1354)
Q Consensus 1147 i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~----~~~VtsI~~~s~~g~~Lvsgs-~DGsIrIwDlrs~~~ 1220 (1354)
+.++|++.++++++ .++.+.++|..+.+ .+..+.... ....... ..+..+....+.. .++.|.+|+......
T Consensus 212 ~~~spdg~~~~va~~~~~~v~v~d~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~~~g~~~~~~~lg~~~v~~~~~~~~~~ 289 (432)
T d1qksa2 212 GGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGH 289 (432)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred CEECCCCCEEEEECCCCCEEEEEECCCCE-EEEEECCCCCCCCCCCCCCE-ECCCCCCEECCCCCCCCEEEECCCCCCCC
T ss_conf 53889887999951666367776144526-88872148622456766410-14898831021356883587624566555
Q ss_pred EEEEECCCCCCCCCEEEEEEE-----------------------------------CCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 267416788788885999992-----------------------------------299999999997799299996789
Q 000681 1221 LVCSTRPHTQQVERVVGISFQ-----------------------------------PGLDPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1221 ~~~~~~~~~~h~~~I~si~fs-----------------------------------p~~~g~~Lvsgs~DG~I~IWDi~~ 1265 (1354)
..|...+....+. |+ +..+++++.|+.+++|++.+
T Consensus 290 --------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpD--g~~la~~s~d~~~k~w~~~~ 359 (432)
T d1qksa2 290 --------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD--IKAMTGDGSDPEFKTLPIAE 359 (432)
T ss_dssp --------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE--GGGCCCSSSCCCEEEECHHH
T ss_pred --------CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEE--CHHHCCCCCCCCEEECCCCC
T ss_conf --------46565777998868997688872688641021126788877035999996--24610455678448633434
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEE-CCCCEEEEEEC
Q ss_conf 9721799915799858999927999899996-----899199995-79934789825
Q 000681 1266 HKDAYLTIDAHRGSLSALAVHRHAPIIASGS-----AKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1266 ~~~~i~~l~~h~~~ItsLafspdg~~Lasgs-----~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
+ .. +..|...+.+++|+|+|+.++.+. .++.|.||| .+++....++.
T Consensus 360 ~-~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 360 W-AG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp H-HT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred C-CC---CCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 4-44---57899868976798999999999704888888689999999558868468
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=3.6e-16 Score=130.08 Aligned_cols=274 Identities=10% Similarity=0.027 Sum_probs=188.2
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCCEEEEEEEC
Q ss_conf 999999789949999879993678962799999986999998608998999-9968980999986677785048840102
Q 000681 1054 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSS 1132 (1354)
Q Consensus 1054 ~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lv-tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1132 (1354)
+++++++.|++|.|||.++++.+..+..+... ..+.+++| ++|+++++ +++.++.|.+||+.+ ++.........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~-~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~ 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG-PTPMVPMV--APGGRIAYATVNKSESLVKIDLVT--GETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT-TCCCCEEE--CTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCB
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCC-CCCCEEEE--CCCCCEEEEEECCCCEEEEEECCC--CCEEEEEECCC
T ss_conf 69999767998999999999499999877889-98237999--999899999978999499999999--92988872477
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 4589997112503799935999499997------------8981999988888513454249999982799997499999
Q 000681 1133 IQGHKPGVRCSNVVVDWQQQSGYLYASG------------EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1200 (1354)
Q Consensus 1133 l~~h~~~V~si~~~i~~sp~~~~Llsag------------~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~ 1200 (1354)
...+...+.. +.|++++..+++++ .++.+.+||..+.. ....+..+. .+.++ .+++++++
T Consensus 77 ~~~~~~~~~~----v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg~~ 148 (337)
T d1pbyb_ 77 PEERVKSLFG----AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPR--QITML-AWARDGSK 148 (337)
T ss_dssp TTEEEECTTC----EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCS--SCCCE-EECTTSSC
T ss_pred CCCCCCCEEE----EEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCE-EEEECCCCC--CCEEE-EECCCCCE
T ss_conf 7312540254----8986877579995047762034203455521203566775-988414568--72189-98688888
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCC---CEEEEEEECC---------------CCCCEEEEEECCCCEEEEE
Q ss_conf 999988990999987799722674167887888---8599999229---------------9999999997799299996
Q 000681 1201 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE---RVVGISFQPG---------------LDPAKIVSASQAGDIQFLD 1262 (1354)
Q Consensus 1201 Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~---~I~si~fsp~---------------~~g~~Lvsgs~DG~I~IWD 1262 (1354)
+++++. .+.+||..+++ ............. ......+.+. ........+..++.+.+|+
T Consensus 149 l~~~~~--~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 149 LYGLGR--DLHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEEESS--SEEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEECC--CCCEEEEECCC-EEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEE
T ss_conf 999717--75056630372-788861477543311357763140146653124663244410366045403676179998
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 78997217999157998589999279998999968991999957-99347898255786444567874999994499799
Q 000681 1263 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1341 (1354)
Q Consensus 1263 i~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~L 1341 (1354)
...+......+..+...+..+.+++++.+++.+. +.|++||. +++.+..+.. . ..+.+++|+|+|.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~--~-------~~~~~~~~s~dG~~l 294 (337)
T d1pbyb_ 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPL--P-------HSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEEC--S-------SCCCEEEECTTSCEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC--CCEEEEECCCCCEEEEECC--C-------CCEEEEEECCCCCEE
T ss_conf 6888588898328875058887426613999735--5289998988969999748--9-------988999997899999
Q ss_pred EEEECCCEEEECC
Q ss_conf 9998898099919
Q 000681 1342 AAGSADACVSIHS 1354 (1354)
Q Consensus 1342 asgs~Dg~I~IWd 1354 (1354)
++++.|+.|.+||
T Consensus 295 ~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 295 WLGGALGDLAAYD 307 (337)
T ss_dssp EEESBSSEEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9994999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=3.3e-15 Score=123.09 Aligned_cols=276 Identities=11% Similarity=0.073 Sum_probs=188.0
Q ss_pred ECCCCCCEEEEEECCCCEEEEECCCC-----------CCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEEECCC
Q ss_conf 02889862798307993999858999-----------98379999589999999-9789949999879993678962799
Q 000681 1016 QRSCNSFDLAVSKLNNPIACWDTRFE-----------KGTKTALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHD 1083 (1354)
Q Consensus 1016 q~~~~~~~L~~s~~d~~I~iWd~~~~-----------~~I~sL~fspdg~~Lat-gs~Dg~I~IWd~~tg~~l~~l~~h~ 1083 (1354)
..+.++..++++..++.|.+||.+++ ..+..+.|+||++++++ +..++.|.+||+.+++.+..+....
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC
T ss_conf 58899969999869997999999999899999948999704599978989999997899939999675671312310365
Q ss_pred CCC---CCEEEEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 999---986999998608998999996------------89809999866777850488401024589997112503799
Q 000681 1084 FPD---KGISKLCLVNELDVSLLLVAS------------CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVD 1148 (1354)
Q Consensus 1084 ~~~---~~ItsL~f~~s~d~~~Lvtgs------------~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~ 1148 (1354)
... ..+..+.| ++|++++++++ .++.+.+|+..+......+. .. .....+.. +.
T Consensus 83 ~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~-~~~~~~~~----~~ 151 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR----TF-PMPRQVYL----MR 151 (346)
T ss_dssp STTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE----EE-ECCSSCCC----EE
T ss_pred CCCCCCCCEEEEEE--ECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEE----EE-ECCCCEEE----EE
T ss_conf 43454774179999--0588889997057752156514676248998525632656887----31-02474399----99
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEE-------------------------EEECCCCCEEEE
Q ss_conf 9359994999978981999988888513454249999982799-------------------------997499999999
Q 000681 1149 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL-------------------------TASQVHGGQLAA 1203 (1354)
Q Consensus 1149 ~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI-------------------------~~~s~~g~~Lvs 1203 (1354)
++ +++.+++.+ +.+.+|+..++. .+..+..+... ..+ .........+.+
T Consensus 152 ~~-~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
T d1jmxb_ 152 AA-DDGSLYVAG--PDIYKMDVKTGK-YTVALPLRNWN--RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225 (346)
T ss_dssp EC-TTSCEEEES--SSEEEECTTTCC-EEEEECSTTCC--CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred EC-CCCEEEEEC--CCCEEEECCCCC-EEEEEECCCCC--CCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEE
T ss_conf 52-787899847--962699806997-89999648986--6237712552899986499816765123111267325754
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 98899099998779972267416788788885999992299999999997799299996789972179991579985899
Q 000681 1204 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1204 gs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsL 1283 (1354)
+..++.+.+||..++........ .+...+..+.++++ +..++.+.. +.|.+||..++ +.+..+. +...+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~-~~v~v~d~~~~-~~~~~~~-~~~~~~~v 297 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEFA---DLTELYFTGLRSPK--DPNQIYGVL-NRLAKYDLKQR-KLIKAAN-LDHTYYCV 297 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECSS--CTTEEEEEE-SEEEEEETTTT-EEEEEEE-CSSCCCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEE---CCCCEEEEEEEECC--CCEEEEECC-CEEEEEECCCC-CEEEEEC-CCCCEEEE
T ss_conf 04783499997778836878763---15660688897179--978999429-83899989999-3999974-99977899
Q ss_pred EECCCCCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 9927999899996899199995-79934789825
Q 000681 1284 AVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1284 afspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
+|+|||+.+++++.|+.|++|| .+++.+.+++.
T Consensus 298 a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 9968999999994899299999965879799988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=8.1e-14 Score=112.93 Aligned_cols=274 Identities=7% Similarity=-0.010 Sum_probs=160.8
Q ss_pred CEEEEECCCC--------CCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCCC----CCE
Q ss_conf 3999858999--------9837999958999999997----------89949999879993678962799999----986
Q 000681 1032 PIACWDTRFE--------KGTKTALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFPD----KGI 1089 (1354)
Q Consensus 1032 ~I~iWd~~~~--------~~I~sL~fspdg~~Latgs----------~Dg~I~IWd~~tg~~l~~l~~h~~~~----~~I 1089 (1354)
.+.+||..++ .....+.|+|||++++++. .++.|.+||..+++.+..+..+.... ...
T Consensus 48 ~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~ 127 (373)
T d2madh_ 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 59999899997999995798860798689998999960577532124531899997778938889726885136851689
Q ss_pred EEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEE-EECCCEEE
Q ss_conf 999998608998999996--898099998667778504884010245899971125037999359994999-97898199
Q 000681 1090 SKLCLVNELDVSLLLVAS--CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIM 1166 (1354)
Q Consensus 1090 tsL~f~~s~d~~~Lvtgs--~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Lls-ag~Dg~I~ 1166 (1354)
..+.| +++++.++... .++.+.+|+... .+ .. .+.....+ +.+++++..+++ .+.|+.+.
T Consensus 128 ~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~--~~--~~-------~~~~~~~~----~~~s~~g~~~~v~~~~dg~~~ 190 (373)
T d2madh_ 128 WMNAN--TPNNADLLFFQFAAGPAVGLVVQGG--SS--DD-------QLLSSPTC----YHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred CCEEE--EECCCCEEEEEECCCCCEEEEECCC--CE--EE-------EEECCCEE----EEEECCCCCEEEEECCCCEEE
T ss_conf 70899--8589937999986987467762368--72--89-------98245206----999628991999994799399
Q ss_pred EEECCCCCEEEEEECCCC----CCC-EEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCC---------
Q ss_conf 998888851345424999----998-279999749999999998899099998779972267416788788---------
Q 000681 1167 LWDLEKEQQMVNPIPSSS----DCS-ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV--------- 1232 (1354)
Q Consensus 1167 IWDl~t~~~~i~~l~~~~----~~~-VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~--------- 1232 (1354)
+||..... ......... ... .... .... +..++....++.+.+|+.......... ....+.
T Consensus 191 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 265 (373)
T d2madh_ 191 KTDHAGGA-AGAGLVGAMLTAAQNLLTQPA-QANK-SGRIVWPVYSGKILQADISAAGATNKA--PIDALSGGRKADTWR 265 (373)
T ss_pred EEECCCCE-EEEEEEEECCCCCCCCEEEEE-EECC-CCEEEEECCCCEEEEEECCCCEEEEEE--EECCCCCCEEEEEEC
T ss_conf 99747742-667886300366753043458-8789-942999258965999976899078977--630564757866413
Q ss_pred -CCEEEEEEECC--------CCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC--EEEEEECCCCE
Q ss_conf -88599999229--------99999999977992999967899721799915799858999927999--89999689919
Q 000681 1233 -ERVVGISFQPG--------LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLI 1301 (1354)
Q Consensus 1233 -~~I~si~fsp~--------~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~--~Lasgs~Dg~I 1301 (1354)
.....+.++++ ..+..+++...++.+.+||..++ +.+..+. +...+..++|+|||+ ++++++.|+.|
T Consensus 266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v 343 (373)
T d2madh_ 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 6741335771499759995488824786258986999989999-6989866-8998258999989998999996799929
Q ss_pred EEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9995-79934789825578644456787499999449
Q 000681 1302 KVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1302 ~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
++|| .+++.+.++.. +. ...+.+++..+
T Consensus 344 ~v~D~~tg~~~~~~~~-~g-------~~P~~l~~~~~ 372 (373)
T d2madh_ 344 HIYDAGAGDQDQSTVE-LG-------SGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCCEEEEECC-CC-------CCCCEEEEECC
T ss_conf 9999999989999888-89-------89818998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-14 Score=116.70 Aligned_cols=270 Identities=11% Similarity=0.172 Sum_probs=168.0
Q ss_pred EEEEECCCCEEEEECCCC------------CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEE
Q ss_conf 798307993999858999------------9837999958999999997-899499998799936789627999999869
Q 000681 1024 LAVSKLNNPIACWDTRFE------------KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGIS 1090 (1354)
Q Consensus 1024 L~~s~~d~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs-~Dg~I~IWd~~tg~~l~~l~~h~~~~~~It 1090 (1354)
.+++..++.|++|+.... ..+..++|+|||++|++++ .++.|++|++........+..+...+..+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCE
T ss_conf 99878999389999839997699999757998868999589799999977899699999968987079853013699854
Q ss_pred EEEEEEECCCCEEEEEEC-CCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEE
Q ss_conf 999986089989999968-9809999866777850488401024589997112503799935999499997-89819999
Q 000681 1091 KLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLW 1168 (1354)
Q Consensus 1091 sL~f~~s~d~~~Lvtgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IW 1168 (1354)
.+.| ++|+++|++++. ++.|.+|+... ...... .....+...+.+ +.+++++..+++++ .+..|.+|
T Consensus 87 ~l~~--spDg~~l~v~~~~~~~v~~~~~~~--~~~~~~---~~~~~~~~~~~~----v~~s~d~~~~~~~~~~~~~i~~~ 155 (333)
T d1ri6a_ 87 HIST--DHQGQFVFVGSYNAGNVSVTRLED--GLPVGV---VDVVEGLDGCHS----ANISPDNRTLWVPALKQDRICLF 155 (333)
T ss_dssp EEEE--CTTSSEEEEEETTTTEEEEEEEET--TEEEEE---EEEECCCTTBCC----CEECTTSSEEEEEEGGGTEEEEE
T ss_pred EEEE--CCCCCEEEECCCCCCCEEEECCCC--CCCEEC---CCCCCCCCCCEE----EEEEECCEEEECCCCCCCEEEEE
T ss_conf 9999--599988742056888302200111--000000---100377853149----88630101310256554205689
Q ss_pred ECCCCCEEE----EEECCCCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEE---E---CCCCCCCCCEEE
Q ss_conf 888885134----5424999998279999749999999998-8990999987799722674---1---678878888599
Q 000681 1169 DLEKEQQMV----NPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCS---T---RPHTQQVERVVG 1237 (1354)
Q Consensus 1169 Dl~t~~~~i----~~l~~~~~~~VtsI~~~s~~g~~Lvsgs-~DGsIrIwDlrs~~~~~~~---~---~~~~~h~~~I~s 1237 (1354)
+........ .............+ .+++++..++... ..+...+++.......... . ............
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (333)
T d1ri6a_ 156 TVSDDGHLVAQDPAEVTTVEGAGPRHM-VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 234 (333)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEE-EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred EECCCCCCEEEECEEEEEECCCCCCEE-EEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEE
T ss_conf 732687410010001334038875279-9960201478620466721788510355520210022343068776553126
Q ss_pred EEEECCCCCCEEEE-EECCCCEEEEECCCCCCCEEE--EECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECC
Q ss_conf 99922999999999-977992999967899721799--915799858999927999899996-89919999579
Q 000681 1238 ISFQPGLDPAKIVS-ASQAGDIQFLDIRNHKDAYLT--IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLE 1307 (1354)
Q Consensus 1238 i~fsp~~~g~~Lvs-gs~DG~I~IWDi~~~~~~i~~--l~~h~~~ItsLafspdg~~Lasgs-~Dg~I~Iwd~~ 1307 (1354)
+.++++ +++++. +..++.+.+|++......... .......+.+++|+|+|++|++++ .++.|++|+++
T Consensus 235 ~~~s~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 235 IHITPD--GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEECTT--SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEECC--CCCEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 899515--672055045688278788739997899999967899762899907989999998899939999997
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=3.5e-14 Score=115.59 Aligned_cols=277 Identities=12% Similarity=0.152 Sum_probs=179.2
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEE--ECCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 9999978994999987999367896--2799999986999998608998999996-898099998667778504884010
Q 000681 1055 IVVAADENERIKIWNYEEDTLLNSF--DNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFS 1131 (1354)
Q Consensus 1055 ~Latgs~Dg~I~IWd~~tg~~l~~l--~~h~~~~~~ItsL~f~~s~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~ 1131 (1354)
.++++..+++|++|+++....+..+ ..+. +.+..++| ++|+++|++++ .|+.|++|++.......+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---~~v~~la~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCC---CCEEEEEE--ECCCCEEEEEECCCCEEEEEEEECCCCCEEEEE---
T ss_conf 9998789993899998399976999997579---98868999--589799999977899699999968987079853---
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEE--ECCCCCCCEEEEEEECCCCCEEEEEEC-C
Q ss_conf 24589997112503799935999499997-8981999988888513454--249999982799997499999999988-9
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNP--IPSSSDCSISALTASQVHGGQLAAGFV-D 1207 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~--l~~~~~~~VtsI~~~s~~g~~Lvsgs~-D 1207 (1354)
...+...+.. ++|++++.++++++ .++.|.+|+..... .... ...+.. .+.++ .++++++.++.+.. +
T Consensus 78 -~~~~~~~p~~----l~~spDg~~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~-~~~~v-~~s~d~~~~~~~~~~~ 149 (333)
T d1ri6a_ 78 -ESALPGSLTH----ISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDVVEGLD-GCHSA-NISPDNRTLWVPALKQ 149 (333)
T ss_dssp -EEECSSCCSE----EEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEEECCCT-TBCCC-EECTTSSEEEEEEGGG
T ss_pred -ECCCCCCCEE----EEECCCCCEEEECCCCCCCEEEECCCCCC-CEECCCCCCCCC-CCEEE-EEEECCEEEECCCCCC
T ss_conf -0136998549----99959998874205688830220011100-000010037785-31498-8630101310256554
Q ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCCCCCEE---EEE------C
Q ss_conf 9099998779972267416--788788885999992299999999997-799299996789972179---991------5
Q 000681 1208 GSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYL---TID------A 1275 (1354)
Q Consensus 1208 GsIrIwDlrs~~~~~~~~~--~~~~h~~~I~si~fsp~~~g~~Lvsgs-~DG~I~IWDi~~~~~~i~---~l~------~ 1275 (1354)
..|.+|+............ ...........+.|+++ +..++... ..+...+|+......... ... .
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 227 (333)
T d1ri6a_ 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN--EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 227 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT--SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred CEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECC--CEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCC
T ss_conf 20568973268741001000133403887527999602--0147862046672178851035552021002234306877
Q ss_pred CCCCEEEEEECCCCCEEEE-EECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC-CCEEEE
Q ss_conf 7998589999279998999-9689919999579-934789825578644456787499999449979999988-980999
Q 000681 1276 HRGSLSALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVSI 1352 (1354)
Q Consensus 1276 h~~~ItsLafspdg~~Las-gs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~-Dg~I~I 1352 (1354)
.......++++++++++.. +..++.+.+|+.. ......+.. +. .....+.+++|+|+|++|++++. ++.|.+
T Consensus 228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG-FQ----PTETQPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE-EE----ECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred CCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEE-EE----CCCCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 6553126899515672055045688278788739997899999-96----789976289990798999999889993999
Q ss_pred CC
Q ss_conf 19
Q 000681 1353 HS 1354 (1354)
Q Consensus 1353 Wd 1354 (1354)
|+
T Consensus 303 ~~ 304 (333)
T d1ri6a_ 303 YE 304 (333)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.75 E-value=8.1e-13 Score=105.64 Aligned_cols=280 Identities=11% Similarity=-0.038 Sum_probs=179.4
Q ss_pred CCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE--------
Q ss_conf 99837999958999999997-----89949999879993678962799999986999998608998999996--------
Q 000681 1041 EKGTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-------- 1107 (1354)
Q Consensus 1041 ~~~I~sL~fspdg~~Latgs-----~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs-------- 1107 (1354)
..++..++++|+++.+++.. ..+.|.+||..+++.+..+..+. . ..+.| ++|+++|++++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---~--~~~a~--SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---L--PNPVA--AHSGSEFALASTSFSRIAK 92 (373)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC---C--CCEEE--CCCCCEEEEEEECCCCCCC
T ss_conf 898656301899978999734225787659999899997999995798---8--60798--6899989999605775321
Q ss_pred --CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEE
Q ss_conf --89809999866777850488401024589997112---503799935999499997--89819999888885134542
Q 000681 1108 --CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC---SNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPI 1180 (1354)
Q Consensus 1108 --~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s---i~~~i~~sp~~~~Llsag--~Dg~I~IWDl~t~~~~i~~l 1180 (1354)
.++.|.+||..+ ++.... +..+...... -...+.|++++..+++.. .++.+.+|+....+ .....
T Consensus 93 ~~~~~~v~v~D~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~ 164 (373)
T d2madh_ 93 GKRTDYVEVFDPVT--FLPIAD-----IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-DDQLL 164 (373)
T ss_pred CCCCEEEEEEECCC--CCEEEE-----EECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCE-EEEEE
T ss_conf 24531899997778--938889-----72688513685168970899858993799998698746776236872-89982
Q ss_pred CCCCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCC--CCCCCCEEEEEEECCCCCCEEEEEECCCC
Q ss_conf 4999998279999749999-99999889909999877997226741678--87888859999922999999999977992
Q 000681 1181 PSSSDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPH--TQQVERVVGISFQPGLDPAKIVSASQAGD 1257 (1354)
Q Consensus 1181 ~~~~~~~VtsI~~~s~~g~-~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~--~~h~~~I~si~fsp~~~g~~Lvsgs~DG~ 1257 (1354)
.. ..++ .++++++ .+++.+.||.+.+||.............. .+.........+.++ ..++..+.++.
T Consensus 165 ~~-----~~~~-~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 235 (373)
T d2madh_ 165 SS-----PTCY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS---GRIVWPVYSGK 235 (373)
T ss_pred CC-----CEEE-EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCC---CEEEEECCCCE
T ss_conf 45-----2069-996289919999947993999974774266788630036675304345887899---42999258965
Q ss_pred EEEEECCCCCCCE--EEEECC----------CCCEEEEEECCCCCEE----------EEEECCCCEEEEE-CCCCEEEEE
Q ss_conf 9999678997217--999157----------9985899992799989----------9996899199995-799347898
Q 000681 1258 IQFLDIRNHKDAY--LTIDAH----------RGSLSALAVHRHAPII----------ASGSAKQLIKVFS-LEGEQLGTI 1314 (1354)
Q Consensus 1258 I~IWDi~~~~~~i--~~l~~h----------~~~ItsLafspdg~~L----------asgs~Dg~I~Iwd-~~g~~l~~i 1314 (1354)
+.+|+..... .. .....+ ......+++++++..+ +....++.+.+|| .+++.+..+
T Consensus 236 v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~ 314 (373)
T d2madh_ 236 ILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEEEECCCCE-EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 9999768990-789776305647578664136741335771499759995488824786258986999989999698986
Q ss_pred ECCCCCCCCCCCCCEEEEEEECCCCE--EEEEECCCEEEECC
Q ss_conf 25578644456787499999449979--99998898099919
Q 000681 1315 RYHHPSFMAQKIGSVNCLTFHPYQVL--LAAGSADACVSIHS 1354 (1354)
Q Consensus 1315 ~~~h~~fl~~~~~~V~sLafspdg~~--Lasgs~Dg~I~IWd 1354 (1354)
.. ...+.+++|+|||+. +++++.|+.|++||
T Consensus 315 ~~---------~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 315 SL---------GHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CC---------CCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 68---------9982589999899989999967999299999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=7.4e-14 Score=113.24 Aligned_cols=278 Identities=9% Similarity=0.028 Sum_probs=161.5
Q ss_pred ECCCCCCEEEEEE-----CCCCEEEEECCCC--------CCEEEEEECCCCCEEEEEE----------CCCCEEEEECCC
Q ss_conf 0288986279830-----7993999858999--------9837999958999999997----------899499998799
Q 000681 1016 QRSCNSFDLAVSK-----LNNPIACWDTRFE--------KGTKTALLQPFSPIVVAAD----------ENERIKIWNYEE 1072 (1354)
Q Consensus 1016 q~~~~~~~L~~s~-----~d~~I~iWd~~~~--------~~I~sL~fspdg~~Latgs----------~Dg~I~IWd~~t 1072 (1354)
.+++++..+++.. ..+.+.+||..++ .....++|+||+++|++++ .++.|++||..+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred EECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 65899999999826647776719999999994999998999985699489999999967776420158999899999999
Q ss_pred CCEEEEEECCCCCC----CCEEEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCC---CC
Q ss_conf 93678962799999----986999998608998999996--8980999986677785048840102458999711---25
Q 000681 1073 DTLLNSFDNHDFPD----KGISKLCLVNELDVSLLLVAS--CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR---CS 1143 (1354)
Q Consensus 1073 g~~l~~l~~h~~~~----~~ItsL~f~~s~d~~~Lvtgs--~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~---si 1143 (1354)
++.+..+..+.... .....+.| ++++..++++. .+..+.+|+..+ ++ ... .+........ ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~--~~--~~~---~~~~~~~~~~~~~~~ 158 (355)
T d2bbkh_ 88 LLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEG--KA--FKR---MLDVPDCYHIFPTAP 158 (355)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTT--TE--EEE---EEECCSEEEEEEEET
T ss_pred CCEEEEEECCCCCEEECCCCCCEEEE--ECCCCEEEEECCCCCCEEEEEECCC--CC--EEE---EEECCCCCEEEECCC
T ss_conf 97988980588640311798734999--3388715773279882045430578--83--766---770587404730699
Q ss_pred EEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 03799935999499997-89819999888885134542499999827999974999999999889909999877997226
Q 000681 1144 NVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1222 (1354)
Q Consensus 1144 ~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~ 1222 (1354)
...+.+++++..+++.. .++.+.+++..... . .....+... .+..++..++.++.+|.+++|+...+....
T Consensus 159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 230 (355)
T d2bbkh_ 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-P------EDEFLINHP-AYSQKAGRLVWPTYTGKIHQIDLSSGDAKF 230 (355)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCS-C------TTSCBCSCC-EEETTTTEEEEEBTTSEEEEEECTTSSCEE
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEEECCCCC-C------EECCEEEEC-CCCCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 63699938999899983478737999624333-0------001106102-153899738874699829999658990799
Q ss_pred EEECCCCCC----------CCCEEEEEEECCCCCCEEEEEECC----------CCEEEEECCCCCCCEEEEECCCCCEEE
Q ss_conf 741678878----------888599999229999999999779----------929999678997217999157998589
Q 000681 1223 CSTRPHTQQ----------VERVVGISFQPGLDPAKIVSASQA----------GDIQFLDIRNHKDAYLTIDAHRGSLSA 1282 (1354)
Q Consensus 1223 ~~~~~~~~h----------~~~I~si~fsp~~~g~~Lvsgs~D----------G~I~IWDi~~~~~~i~~l~~h~~~Its 1282 (1354)
.. ....+ ......+.++++ +..++....+ ..|.+||..++ +.+..+.. ...+.+
T Consensus 231 ~~--~~~~~~~~~~~~~~~p~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~-~~~~~~ 304 (355)
T d2bbkh_ 231 LP--AVEALTEAERADGWRPGGWQQVAYHRA--LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEM-GHEIDS 304 (355)
T ss_dssp CC--CEESSCHHHHHTTEEECSSSCEEEETT--TTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEE-EEEECE
T ss_pred EE--CCCCCCCCEEEEEEECCCEEEEEEECC--CCEEEEEECCCCCEEECCCCCEEEEEECCCC-CEEEEECC-CCCEEE
T ss_conf 84--457844126854330351089998079--9767887406871265179975999867888-49899668-998779
Q ss_pred EEECCCCC--EEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 99927999--899996899199995-79934789825
Q 000681 1283 LAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1283 Lafspdg~--~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
++|+|+|+ ++++++.|+.|.+|| .+++.+.++..
T Consensus 305 ~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 9992899969999978999899999999989999928
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=3.1e-14 Score=116.00 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=182.9
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE----------
Q ss_conf 837999958999999997-----89949999879993678962799999986999998608998999996----------
Q 000681 1043 GTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---------- 1107 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs-----~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs---------- 1107 (1354)
++...+.+|++..+++.. .++.|.+||..+++.+.++..+. . ..++| ++|+++|++.+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~---~--~~~a~--SpDg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PNPVV--ADDGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---S--CEEEE--CTTSSCEEEEEEEEEETTEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCC---C--CCEEE--CCCCCEEEEEECCCCCCCCCC
T ss_conf 7174765899999999826647776719999999994999998999---9--85699--489999999967776420158
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 89809999866777850488401024589997112503799935999499997--8981999988888513454249999
Q 000681 1108 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSD 1185 (1354)
Q Consensus 1108 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag--~Dg~I~IWDl~t~~~~i~~l~~~~~ 1185 (1354)
.++.|++||..+ ++..- .......+...+......+.|+++++.++++. .+..+.+||..++. .+..+..+..
T Consensus 76 ~d~~v~v~D~~t--~~~~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (355)
T d2bbkh_ 76 RTDYVEVFDPVT--LLPTA--DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDC 150 (355)
T ss_dssp EEEEEEEECTTT--CCEEE--EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSE
T ss_pred CCCEEEEEECCC--CCEEE--EEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCC
T ss_conf 999899999999--97988--980588640311798734999338871577327988204543057883-7667705874
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf 9827999974999999999889909999877997226741--67887888859999922999999999977992999967
Q 000681 1186 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST--RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1263 (1354)
Q Consensus 1186 ~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~--~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi 1263 (1354)
. . . ........++.+.||...++............ .....+...+....+.+. +..++.++.++.+++|+.
T Consensus 151 ~--~-~--~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~ 223 (355)
T d2bbkh_ 151 Y--H-I--FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK--AGRLVWPTYTGKIHQIDL 223 (355)
T ss_dssp E--E-E--EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT--TTEEEEEBTTSEEEEEEC
T ss_pred C--E-E--EECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCC--CCEEEEECCCCEEEEEEC
T ss_conf 0--4-7--3069963699938999899983478737999624333000110610215389--973887469982999965
Q ss_pred CCCCCC-EEEEECC----------CCCEEEEEECCCCCEEEEEECC----------CCEEEEE-CCCCEEEEEECCCCCC
Q ss_conf 899721-7999157----------9985899992799989999689----------9199995-7993478982557864
Q 000681 1264 RNHKDA-YLTIDAH----------RGSLSALAVHRHAPIIASGSAK----------QLIKVFS-LEGEQLGTIRYHHPSF 1321 (1354)
Q Consensus 1264 ~~~~~~-i~~l~~h----------~~~ItsLafspdg~~Lasgs~D----------g~I~Iwd-~~g~~l~~i~~~h~~f 1321 (1354)
..+... +.....+ ......+++++++..++....+ ..|.+|| .+++.+..+.. .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~--- 299 (355)
T d2bbkh_ 224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G--- 299 (355)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E---
T ss_pred CCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-C---
T ss_conf 899079984457844126854330351089998079976788740687126517997599986788849899668-9---
Q ss_pred CCCCCCCEEEEEEECCCC--EEEEEECCCEEEECC
Q ss_conf 445678749999944997--999998898099919
Q 000681 1322 MAQKIGSVNCLTFHPYQV--LLAAGSADACVSIHS 1354 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~--~Lasgs~Dg~I~IWd 1354 (1354)
..+.+++|+|+|+ ++++++.|+.|.+||
T Consensus 300 -----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 300 -----HEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp -----EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred -----CCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf -----987799992899969999978999899999
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=1.8e-12 Score=103.12 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=171.4
Q ss_pred CCCHHHHHHHHHCHHHHH--HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 963236788751103466--799999998417987999988608836889850358344556999999987604900121
Q 000681 460 PEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1354)
Q Consensus 460 p~~lP~vLq~LlS~~~rl--ral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~q~ 537 (1354)
.|.+|++.++|.|+..++ .++-.|+.+..-++-.+...+..|+++.+++++++...+.+..++.+++.++........
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78747899985599715899999999998541189999887413556301204568889999999999998468742047
Q ss_pred HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43304671346552188988367788999999999509910237887543799999953078999999988899999999
Q 000681 538 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 617 (1354)
Q Consensus 538 ~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~ 617 (1354)
.....++...++..+...+ ++.+..+|.+|+.++.+.+......++.+++..+..++. .+++.++..++-+
T Consensus 241 ~~~~~~~l~~l~~~l~~~d--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~v~~~al~~ 311 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-------HESTLVQTPALRA 311 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
T ss_conf 9999999999998723563--899999999987532277111100112233111011025-------7863644567777
Q ss_pred HHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99730244377673103680466743204999578899999996401458777889988998877199999999999999
Q 000681 618 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSL 697 (1354)
Q Consensus 618 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 697 (1354)
|+.+..+.+......++.++...+..++.++.+.||.+++.+|+.+.... ......-.+..+...+
T Consensus 312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~--------------~~~~~~i~~~~~l~~l 377 (503)
T d1wa5b_ 312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN--------------TEQIQAVIDANLIPPL 377 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------------HHHHHHHHHCCCCCHH
T ss_conf 77787788887876312340999999963997888999987788886146--------------9888999971465236
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6420579922148999999999985
Q 000681 698 LTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 698 l~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
+.....+++.|++|++++++.+...
T Consensus 378 i~~l~~~~~~v~~~a~~~l~nl~~~ 402 (503)
T d1wa5b_ 378 VKLLEVAEYKTKKEACWAISNASSG 402 (503)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7760268736899999999999736
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=3.1e-11 Score=94.04 Aligned_cols=239 Identities=17% Similarity=0.226 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHCHH-HHHH--HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 63236788751103-4667--99999998417987999988608836889850358344556999999987604900121
Q 000681 461 EQLPIVLQVLLSQC-HRFR--ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 537 (1354)
Q Consensus 461 ~~lP~vLq~LlS~~-~rlr--al~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~q~ 537 (1354)
|.+|.++++|.+.. .++| +...|+.+....+..+...+..|+.|.++++|+++..+.+..++.+++.|+..++.++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999874699889999999999998639855104766446315666403568799999999999988500168999
Q ss_pred HHHCCCCHHHHHH-----------------------------------------------HCCCCCCCHHHHHHHHHHHH
Q ss_conf 4330467134655-----------------------------------------------21889883677889999999
Q 000681 538 DLVKDGGHAYFIR-----------------------------------------------FLDSMEAYPEQRAMAAFVLA 570 (1354)
Q Consensus 538 ~l~k~~~~~~f~~-----------------------------------------------~L~~~~~~~~~r~~~af~La 570 (1354)
.+...+++..++. .+...+ ++.+..++.+|+
T Consensus 136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~a~~~l~ 213 (434)
T d1q1sc_ 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND--PEVLADSCWAIS 213 (434)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHC
T ss_conf 999863005899998722321001899999999998886426422114436569999999985244--201256776640
Q ss_pred HHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCH
Q ss_conf 99509910237887543799999953078999999988899999999997302443776731036804667432049995
Q 000681 571 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 650 (1354)
Q Consensus 571 ~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP 650 (1354)
.+..+.+.........+++..+..++. +++++++..++-+|+.+....++.+...++.++...+..++.++.+
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~-------~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 286 (434)
T d1q1sc_ 214 YLTDGPNERIEMVVKKGVVPQLVKLLG-------ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 286 (434)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHT-------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSH
T ss_pred CCCHHHHHHHHHHHHCCCCHHCCCCCC-------CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCH
T ss_conf 220123456777763154201000023-------4306554021221356776666778999852564057776136414
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 788999999964014587778899889988771999999999999996420579922148999999999985
Q 000681 651 EVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 651 ~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
+||.+++.+|+.+.... ......-.+..+...++.+..+.++.||.+++.++..+...
T Consensus 287 ~v~~~a~~~L~~l~~~~--------------~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~ 344 (434)
T d1q1sc_ 287 NIQKEATWTMSNITAGR--------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344 (434)
T ss_dssp HHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC--------------CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 66688887886520045--------------04577776654689999877515868899999999999834
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=1.5e-11 Score=96.37 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHHCH-H--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Q ss_conf 9006987854798722798888999-------6323678875110-3--4667999999984179879999886088368
Q 000681 436 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ-C--HRFRALVLLGRFLDMGPWAVDLALSVGIFPY 505 (1354)
Q Consensus 436 ~~ff~~qLtafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~-~--~rlral~ll~~fld~g~wAv~lal~~gifpy 505 (1354)
+.-.+.|+.++..+-+.-+....|| |.+|.++++|++. . -+..|+.+|+.+....+.-+......|+.|+
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 166 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 166 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
T ss_conf 99999999999999999740788439999987984999998717999999999999999997498887799996787478
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 89850358344556999999987604900121433046713465521889883677889999999995099102378875
Q 000681 506 VLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIE 585 (1354)
Q Consensus 506 vlklL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~ 585 (1354)
++.+|+++..+.+..++..++.|+..++.++..++..+++..++..+.+.+. ..+.-++.+|+.++.+..........
T Consensus 167 l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~~~~~~~ 244 (503)
T d1wa5b_ 167 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQPDWSVV 244 (503)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCH--HHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9998559971589999999999854118999988741355630120456888--99999999999984687420479999
Q ss_pred HCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 43799999953078999999988899999999997302443776731036804667432049995788999999964014
Q 000681 586 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 586 ~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
.++...+..++. ..+++++..+|.+|+.+....++.....++.++...+..++..+++.|+..++.+|+.+..
T Consensus 245 ~~~l~~l~~~l~-------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 245 SQALPTLAKLIY-------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp GGGHHHHHHHTT-------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998723-------5638999999999875322771111001122331110110257863644567777777877
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 587778899889988771999999999999996420579922148999999999985
Q 000681 666 IGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
.. +.......+..+...+..+.....+.+|++++++++.+...
T Consensus 318 ~~--------------~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~ 360 (503)
T d1wa5b_ 318 GN--------------DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 360 (503)
T ss_dssp SC--------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HH--------------HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 88--------------88787631234099999996399788899998778888614
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-12 Score=103.88 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=168.2
Q ss_pred HHCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHH
Q ss_conf 51103466799999998417987999988608836889-85035834455699999998760490012143304671346
Q 000681 470 LLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVL-KLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 548 (1354)
Q Consensus 470 LlS~~~rlral~ll~~fld~g~wAv~lal~~gifpyvl-klL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f 548 (1354)
--++..+..|+..|..+++-..+|+.+ .+.|+++..+ .+|.++..+.|..++.+++.++...+.+|..+++.+++..+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l-~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADF-CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHH-HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHH-HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 799999999999999997697889999-9869999999998379999999999999999998888888999972763799
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 55218898836778899999999950991023788754379999995307899999998889999999999730244377
Q 000681 549 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 628 (1354)
Q Consensus 549 ~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~ 628 (1354)
+..|+.... ++.|.-+++.|+.++.+++.++......+.+..+..+|. ++++.++.+++.+|+.|+...++.
T Consensus 107 v~lL~~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~-------~~~~~~~~~a~~~L~~l~~~~~~~ 178 (264)
T d1xqra1 107 LRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-------QQVQKLKVKSAFLLQNLLVGHPEH 178 (264)
T ss_dssp HHHHHHCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-------SSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999604998-999999999999874244026789987201268899880-------586578899999999987445778
Q ss_pred HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 6731036804667432049995788999999964014
Q 000681 629 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 629 ~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
+....+.++...|..++.+++++||..++.+|+.+..
T Consensus 179 ~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888876468999999739998999999999999986
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=9.1e-11 Score=90.67 Aligned_cols=259 Identities=9% Similarity=-0.003 Sum_probs=149.9
Q ss_pred CEEEEECCCC--------CCEEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCC----CCCE
Q ss_conf 3999858999--------9837999958999999997----------8994999987999367896279999----9986
Q 000681 1032 PIACWDTRFE--------KGTKTALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGI 1089 (1354)
Q Consensus 1032 ~I~iWd~~~~--------~~I~sL~fspdg~~Latgs----------~Dg~I~IWd~~tg~~l~~l~~h~~~----~~~I 1089 (1354)
.+.+||...+ .....+.|+||++.+++++ .++.|.+||..+++.+..+..+... +...
T Consensus 47 ~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p 126 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEEEEECCCCCEEEEEECCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCC
T ss_conf 17997089983778885787775139899988999755676401035678699998999938306437854210246886
Q ss_pred EEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 999998608998999996-8980999986677785048840102458999711250379993599949999789819999
Q 000681 1090 SKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1168 (1354)
Q Consensus 1090 tsL~f~~s~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IW 1168 (1354)
..+.| ++|+++++++. .++.+.+||+.+ ++ .. +.+..+.... +.. .....+++.+.||.+.++
T Consensus 127 ~~~a~--SpDGk~l~va~~~~~~v~~~d~~~--~~--~~---~~~~~~~~~~------~~~-~~~~~~v~~~~Dg~~~~~ 190 (368)
T d1mdah_ 127 HIIGN--CASSACLLFFLFGSSAAAGLSVPG--AS--DD---QLTKSASCFH------IHP-GAAATHYLGSCPASLAAS 190 (368)
T ss_dssp TSEEE--CTTSSCEEEEECSSSCEEEEEETT--TE--EE---EEEECSSCCC------CEE-EETTEEECCCCTTSCEEE
T ss_pred CCEEE--CCCCCEEEEEECCCCEEEEEECCC--CC--EE---EEEECCCCCE------ECC-CCCCEEEEECCCCCEEEE
T ss_conf 40588--789989999968998599998998--93--86---7860467523------746-998239999489988999
Q ss_pred ECCCCCEEEEEECC-----CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC----------CC
Q ss_conf 88888513454249-----9999827999974999999999889909999877997226741678878----------88
Q 000681 1169 DLEKEQQMVNPIPS-----SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ----------VE 1233 (1354)
Q Consensus 1169 Dl~t~~~~i~~l~~-----~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h----------~~ 1233 (1354)
+..... ....... .....+... ...+++..+.. .++.+.+++...+...... ....+ ..
T Consensus 191 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 264 (368)
T d1mdah_ 191 DLAAAP-AAAGIVGAQCTGAQNCSSQAA-QANYPGMLVWA--VASSILQGDIPAAGATMKA--AIDGNESGRKADNFRSA 264 (368)
T ss_dssp ECCSSC-CCCEECCCCSCTTSCBCSCCE-EETTTTEEEEC--BSSCCEEEECCSSCCEEEC--CCCSSCTHHHHTTEEEC
T ss_pred EECCCC-EEEEEEECCCCCCCCCCEEEC-CCCCCCEEEEE--CCCCEEEEEECCCCEEEEE--ECCCCCCEEEEEEECCC
T ss_conf 826896-266653031113566646601-01558689993--4897799960699369976--02465430455401278
Q ss_pred CEEEEEEECCCCCCEEEEEECC---------CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC--EEEEEECCCCEE
Q ss_conf 8599999229999999999779---------92999967899721799915799858999927999--899996899199
Q 000681 1234 RVVGISFQPGLDPAKIVSASQA---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIK 1302 (1354)
Q Consensus 1234 ~I~si~fsp~~~g~~Lvsgs~D---------G~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~--~Lasgs~Dg~I~ 1302 (1354)
....+.++++ +..++....+ ..|.+||..++ +.+..+.. ...+.+++|+|+++ +++++..|+.|+
T Consensus 265 g~~~~a~~~~--~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~ 340 (368)
T d1mdah_ 265 GFQMVAKLKN--TDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp SSSCEEEETT--TTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCEEEEECCC--CCEEEEEECCCCCEEECCCCEEEEEECCCC-CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEE
T ss_conf 8356887179--987999835897334058864999989999-48689558-9965179999899989999948999699
Q ss_pred EEE-CCCCEEEEEEC
Q ss_conf 995-79934789825
Q 000681 1303 VFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1303 Iwd-~~g~~l~~i~~ 1316 (1354)
+|| .+++.+.++..
T Consensus 341 v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 341 IYDAASDQDQSSVEL 355 (368)
T ss_dssp EEESSSCEEEEECCC
T ss_pred EEECCCCCEEEEEEC
T ss_conf 998999979999879
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.37 E-value=1.3e-09 Score=82.34 Aligned_cols=294 Identities=8% Similarity=0.038 Sum_probs=144.8
Q ss_pred CCCCEEEEECCCC---------------CCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEECCCC
Q ss_conf 7993999858999---------------98379999589999999978---------99499998799936789627999
Q 000681 1029 LNNPIACWDTRFE---------------KGTKTALLQPFSPIVVAADE---------NERIKIWNYEEDTLLNSFDNHDF 1084 (1354)
Q Consensus 1029 ~d~~I~iWd~~~~---------------~~I~sL~fspdg~~Latgs~---------Dg~I~IWd~~tg~~l~~l~~h~~ 1084 (1354)
.++.+.+||..++ ..|.++.|+||+++|+.++. ++.+.+||+++++ +..+..+.
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~- 111 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP- 111 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC-
T ss_pred CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCC-
T ss_conf 5994999988999789997015644316765405998988979999777100010467349999898885-13124687-
Q ss_pred CCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEEC----CCC---------CCCCCCCCEEEEEEEC
Q ss_conf 999869999986089989999968980999986677785048840102----458---------9997112503799935
Q 000681 1085 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS----IQG---------HKPGVRCSNVVVDWQQ 1151 (1354)
Q Consensus 1085 ~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~----l~~---------h~~~V~si~~~i~~sp 1151 (1354)
..+....| ++||..++... ++.+.+|+... +.......... +.+ ....... +.|+|
T Consensus 112 --~~~~~~~~--SPDG~~ia~~~-~~~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~----~~wSP 180 (470)
T d2bgra1 112 --NNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA----LWWSP 180 (470)
T ss_dssp --TTEEEEEE--CSSTTCEEEEE-TTEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC----EEECT
T ss_pred --CCCCCCCC--CCCCCEEEEEE-CCCCEEEECCC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC----CEECC
T ss_conf --42310101--46764135751-46413798899--9465321014777405354320112100477653----07999
Q ss_pred CCCEEEEEEC-CCEEEEEEC-----------------------------------CCCCEEEEEEC----------CCCC
Q ss_conf 9994999978-981999988-----------------------------------88851345424----------9999
Q 000681 1152 QSGYLYASGE-VSSIMLWDL-----------------------------------EKEQQMVNPIP----------SSSD 1185 (1354)
Q Consensus 1152 ~~~~Llsag~-Dg~I~IWDl-----------------------------------~t~~~~i~~l~----------~~~~ 1185 (1354)
++..++.... +..+..|++ ..+. ...... ...+
T Consensus 181 DGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 259 (470)
T d2bgra1 181 NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS-SVTNATSIQITAPASMLIGD 259 (470)
T ss_dssp TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCC-SSSCCCEEEECCCHHHHTSC
T ss_pred CCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCC-EEEECCCCCCCCCCCCCCCC
T ss_conf 98722026863776706998766047778871354036654546886257999988861-45520332247863347898
Q ss_pred CCEEEEEEECCCCCEEEEE-ECCC---EEEE--EECCCCCEEEEEEC------CC----CCCCCCEEEEEEECCCCCCEE
Q ss_conf 9827999974999999999-8899---0999--98779972267416------78----878888599999229999999
Q 000681 1186 CSISALTASQVHGGQLAAG-FVDG---SVRL--YDVRTPDMLVCSTR------PH----TQQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1186 ~~VtsI~~~s~~g~~Lvsg-s~DG---sIrI--wDlrs~~~~~~~~~------~~----~~h~~~I~si~fsp~~~g~~L 1249 (1354)
..+..+ .+..++..++.. ...+ .+.+ +|..++. ...... .. ..+.. ....+.++.++.++
T Consensus 260 ~~~~~~-~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 260 HYLCDV-TWATQERISLQWLRRIQNYSVMDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRP--SEPHFTLDGNSFYK 335 (470)
T ss_dssp EEEEEE-EEEETTEEEEEEEESSTTEEEEEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSC--CCCEECTTSSEEEE
T ss_pred CEEEEE-EECCCCCEEEEEEECCCCCEEEEEEEECCCCCC-EEEEEEEEEEEEECCCEEECCCC--CCCEEEECCCCCEE
T ss_conf 667788-876878334787304688159999996188894-78999875146621433531357--77245423788479
Q ss_pred EEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC-EEEEEECCC----CEEEEE--CCC-CEEEEEECCCCCC
Q ss_conf 99977992999967899721799915799858999927999-899996899----199995--799-3478982557864
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQ----LIKVFS--LEG-EQLGTIRYHHPSF 1321 (1354)
Q Consensus 1250 vsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~-~Lasgs~Dg----~I~Iwd--~~g-~~l~~i~~~h~~f 1321 (1354)
.....+|..++|.....+.....+..+...|..+ ++.++. ++++++.++ .-.||. +.+ .....+.. .
T Consensus 336 ~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~-~--- 410 (470)
T d2bgra1 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC-E--- 410 (470)
T ss_dssp EEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST-T---
T ss_pred EEECCCCCCEEEEEECCCCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECC-C---
T ss_conf 8743675764599952687304511698048787-8977999999995689983517999998889986057035-4---
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 445678749999944997999998
Q 000681 1322 MAQKIGSVNCLTFHPYQVLLAAGS 1345 (1354)
Q Consensus 1322 l~~~~~~V~sLafspdg~~Lasgs 1345 (1354)
+..+...+..++|+|+|++++...
T Consensus 411 ~~~~~~~~~s~~fSpdgky~~~~~ 434 (470)
T d2bgra1 411 LNPERCQYYSVSFSKEAKYYQLRC 434 (470)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 358889879999998999999983
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=6.8e-10 Score=84.33 Aligned_cols=280 Identities=11% Similarity=-0.082 Sum_probs=167.3
Q ss_pred EEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE----------C
Q ss_conf 379999589999999---97899--49999879993678962799999986999998608998999996----------8
Q 000681 1044 TKTALLQPFSPIVVA---ADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------C 1108 (1354)
Q Consensus 1044 I~sL~fspdg~~Lat---gs~Dg--~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs----------~ 1108 (1354)
...+...++++.... +..++ .+.+||..+++.+.....+. .. .+.| ++|++.+++.+ .
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~--spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVA--GHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEE--CTTSSCEEEEEEEETTTTSSSE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC---CC--CCEE--CCCCCEEEEECCCCCCCCCCCC
T ss_conf 666455898761269720457886217997089983778885787---77--5139--8999889997556764010356
Q ss_pred CCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 9809999866777850488401024589997112503799935999499997-898199998888851345424999998
Q 000681 1109 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCS 1187 (1354)
Q Consensus 1109 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~~~ 1187 (1354)
|+.|++||..+.+....+................ +.|++++++++++. .++.+.+||+.+.+ .+..+..+....
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~----~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~~ 169 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI----IGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFH 169 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTS----EEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSSCCC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEECCCCCCCC----EEECCCCCEEEEEECCCCEEEEEECCCCC-EEEEEECCCCCE
T ss_conf 7869999899993830643785421024688640----58878998999996899859999899893-867860467523
Q ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 27999974999999999889909999877997226741--6788788885999992299999999997799299996789
Q 000681 1188 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST--RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1265 (1354)
Q Consensus 1188 VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~--~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~ 1265 (1354)
+. ......+++.+.||.+.+++........... .....+...+....+.++ +..+.+ ..+.+.+++...
T Consensus 170 ~~-----~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~v~~~~~~~ 240 (368)
T d1mdah_ 170 IH-----PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP--GMLVWA--VASSILQGDIPA 240 (368)
T ss_dssp CE-----EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT--TEEEEC--BSSCCEEEECCS
T ss_pred EC-----CCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCC--CEEEEE--CCCCEEEEEECC
T ss_conf 74-----699823999948998899982689626665303111356664660101558--689993--489779996069
Q ss_pred CCCCEEEEE--CC----------CCCEEEEEECCCCCEEEEEECC---------CCEEEEE-CCCCEEEEEECCCCCCCC
Q ss_conf 972179991--57----------9985899992799989999689---------9199995-799347898255786444
Q 000681 1266 HKDAYLTID--AH----------RGSLSALAVHRHAPIIASGSAK---------QLIKVFS-LEGEQLGTIRYHHPSFMA 1323 (1354)
Q Consensus 1266 ~~~~i~~l~--~h----------~~~ItsLafspdg~~Lasgs~D---------g~I~Iwd-~~g~~l~~i~~~h~~fl~ 1323 (1354)
.. ...... .+ .+....+++++++..++....+ ..|.+|| .+++.+..+..
T Consensus 241 ~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~------- 312 (368)
T d1mdah_ 241 AG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------- 312 (368)
T ss_dssp SC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-------
T ss_pred CC-EEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC-------
T ss_conf 93-6997602465430455401278835688717998799983589733405886499998999948689558-------
Q ss_pred CCCCCEEEEEEECCCC-E-EEEEECCCEEEECC
Q ss_conf 5678749999944997-9-99998898099919
Q 000681 1324 QKIGSVNCLTFHPYQV-L-LAAGSADACVSIHS 1354 (1354)
Q Consensus 1324 ~~~~~V~sLafspdg~-~-Lasgs~Dg~I~IWd 1354 (1354)
...+.+++|+||++ + ++++..|+.|.+||
T Consensus 313 --~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 313 --GHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp --EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred --CCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf --9965179999899989999948999699998
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.24 E-value=3.3e-09 Score=79.26 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=67.6
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 88368898503583445569999999876049001214330467134655218898836778899999999950991023
Q 000681 501 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 580 (1354)
Q Consensus 501 gifpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq 580 (1354)
+++|.+.+++.+...+.+.-++..++.+...+......+...++...++..+...+ ++.+.-++-+|..++.+.+...
T Consensus 188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~al~~l~~l~~~~~~~~ 265 (434)
T d1q1sc_ 188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTGTDEQT 265 (434)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCH--HHHHHCHHHHHHHHHHHHHHHH
T ss_conf 69999999985244201256776640220123456777763154201000023430--6554021221356776666778
Q ss_pred HHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 78875437999999530789999999888999999999973024437767310368046674320499957889999999
Q 000681 581 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 660 (1354)
Q Consensus 581 ~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 660 (1354)
...++.+++..+..+|. ++.+++|..++.+|+.+.....+......+.++...+..++.++.++||.+++.+|
T Consensus 266 ~~~~~~~~~~~l~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l 338 (434)
T d1q1sc_ 266 QKVIDAGALAVFPSLLT-------NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI 338 (434)
T ss_dssp HHHHHTTGGGGHHHHTT-------CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99985256405777613-------64146668888788652004504577776654689999877515868899999999
Q ss_pred HHCC
Q ss_conf 6401
Q 000681 661 GTLL 664 (1354)
Q Consensus 661 ~~~i 664 (1354)
+.+.
T Consensus 339 ~nl~ 342 (434)
T d1q1sc_ 339 TNYT 342 (434)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=2.6e-07 Score=65.45 Aligned_cols=294 Identities=11% Similarity=-0.014 Sum_probs=153.2
Q ss_pred HHEEECCCCCCEEEEEEC---------CCCEEEEECCCC---------CCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 210002889862798307---------993999858999---------98379999589999999978994999987999
Q 000681 1012 IAKCQRSCNSFDLAVSKL---------NNPIACWDTRFE---------KGTKTALLQPFSPIVVAADENERIKIWNYEED 1073 (1354)
Q Consensus 1012 i~~~q~~~~~~~L~~s~~---------d~~I~iWd~~~~---------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg 1073 (1354)
+...++++|+..++.... .+.+.+||.+++ ..+....|+|||+.+|... ++.+.+|+..++
T Consensus 64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g 142 (470)
T d2bgra1 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (470)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred CCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCC
T ss_conf 5405998988979999777100010467349999898885131246874231010146764135751-464137988999
Q ss_pred CEEEEEECCCC---------------CCCCEEEEEEEEECCCCEEEEEECCCE-EEEEECC---CC-CCCCEEEE-----
Q ss_conf 36789627999---------------999869999986089989999968980-9999866---77-78504884-----
Q 000681 1074 TLLNSFDNHDF---------------PDKGISKLCLVNELDVSLLLVASCNGN-IRIWKDY---DQ-KDKQKLVT----- 1128 (1354)
Q Consensus 1074 ~~l~~l~~h~~---------------~~~~ItsL~f~~s~d~~~Lvtgs~DG~-IrIWdl~---~~-~~~~~lvs----- 1128 (1354)
+.......+.. ..+....+.| +||+..|+....|.. +..|.+. .. ........
T Consensus 143 ~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (470)
T d2bgra1 143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (470)
T ss_dssp CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEE--CCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCC
T ss_conf 465321014777405354320112100477653079--999872202686377670699876604777887135403665
Q ss_pred -----------EEECCCCCCCCCC---------------CCEEEEEEECCCCEEEEEE-CC---CE--EEEEECCCCCEE
Q ss_conf -----------0102458999711---------------2503799935999499997-89---81--999988888513
Q 000681 1129 -----------AFSSIQGHKPGVR---------------CSNVVVDWQQQSGYLYASG-EV---SS--IMLWDLEKEQQM 1176 (1354)
Q Consensus 1129 -----------~~~~l~~h~~~V~---------------si~~~i~~sp~~~~Llsag-~D---g~--I~IWDl~t~~~~ 1176 (1354)
.+....+....+. .....+.|.+++..++... .. .. +..+|..++. .
T Consensus 221 ~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~-~ 299 (470)
T d2bgra1 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR-W 299 (470)
T ss_dssp TTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE-E
T ss_pred CCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCC-E
T ss_conf 454688625799998886145520332247863347898667788876878334787304688159999996188894-7
Q ss_pred EEEEC-----CC-------CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCC
Q ss_conf 45424-----99-------9998279999749999999998899099998779972267416788788885999992299
Q 000681 1177 VNPIP-----SS-------SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1244 (1354)
Q Consensus 1177 i~~l~-----~~-------~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~ 1244 (1354)
..... .. ........ ....++..+.....||..++|............ . .+...+..+ ++.+
T Consensus 300 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~l-t--~g~~~v~~~-~~~d- 373 (470)
T d2bgra1 300 NCLVARQHIEMSTTGWVGRFRPSEPHF-TLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI-T--KGTWEVIGI-EALT- 373 (470)
T ss_dssp EECGGGCEEEECSSSCSSSSSCCCCEE-CTTSSEEEEEEECTTSCEEEEEEETTCSCCEES-C--CSSSCEEEE-EEEC-
T ss_pred EEEEEEEEEEEECCCEEECCCCCCCEE-EECCCCCEEEEECCCCCCEEEEEECCCCCEEEE-C--CCCEEEEEE-EEEC-
T ss_conf 899987514662143353135777245-423788479874367576459995268730451-1--698048787-8977-
Q ss_pred CCCEEEEEECCC----CEEEE--ECCCCCCCEEEE----ECCCCCEEEEEECCCCCEEEEE---ECCCCEEEEE-CCCCE
Q ss_conf 999999997799----29999--678997217999----1579985899992799989999---6899199995-79934
Q 000681 1245 DPAKIVSASQAG----DIQFL--DIRNHKDAYLTI----DAHRGSLSALAVHRHAPIIASG---SAKQLIKVFS-LEGEQ 1310 (1354)
Q Consensus 1245 ~g~~Lvsgs~DG----~I~IW--Di~~~~~~i~~l----~~h~~~ItsLafspdg~~Lasg---s~Dg~I~Iwd-~~g~~ 1310 (1354)
+..++++++.++ .-.+| ++..+ .....+ ..|...+..++|||+|++++.. ...-.+.+|+ .+++.
T Consensus 374 ~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~ 452 (470)
T d2bgra1 374 SDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (470)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred CCEEEEEEECCCCCCCEEEEEEEECCCC-CCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 9999999956899835179999988899-860570354358889879999998999999983289998199999899989
Q ss_pred EEEEEC
Q ss_conf 789825
Q 000681 1311 LGTIRY 1316 (1354)
Q Consensus 1311 l~~i~~ 1316 (1354)
+..+..
T Consensus 453 v~~le~ 458 (470)
T d2bgra1 453 LRVLED 458 (470)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999806
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.13 E-value=2.3e-08 Score=73.10 Aligned_cols=273 Identities=11% Similarity=0.049 Sum_probs=120.9
Q ss_pred CCCCCEEEEE-ECCCCEEEEECCCC-----------CCEEEEEECCCCC--EEEEEECCC-----------------CEE
Q ss_conf 8898627983-07993999858999-----------9837999958999--999997899-----------------499
Q 000681 1018 SCNSFDLAVS-KLNNPIACWDTRFE-----------KGTKTALLQPFSP--IVVAADENE-----------------RIK 1066 (1354)
Q Consensus 1018 ~~~~~~L~~s-~~d~~I~iWd~~~~-----------~~I~sL~fspdg~--~Latgs~Dg-----------------~I~ 1066 (1354)
.+|+..+.+. ..++.|.+||..+. ..+..+.|+|+++ +++..+++. .+.
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~ 159 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT 159 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred CCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 68888899973899979999887784755795678878643487056998999956677544367663001455532388
Q ss_pred EEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC-EEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEE
Q ss_conf 99879993678962799999986999998608998999996898-09999866777850488401024589997112503
Q 000681 1067 IWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNV 1145 (1354)
Q Consensus 1067 IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~ 1145 (1354)
.+|..+.+....+.... ....+.+ +++++++++.+.+. .+..++..+. .....+.. . ..-..
T Consensus 160 ~iD~~t~~v~~qI~v~~----~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~-~~~d~i~v---~----n~p~~--- 222 (441)
T d1qnia2 160 AIDAETMDVAWQVIVDG----NLDNTDA--DYTGKYATSTCYNSERAVDLAGTMR-NDRDWVVV---F----NVERI--- 222 (441)
T ss_dssp EEETTTCSEEEEEEESS----CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTC-SSBCEEEE---E----EHHHH---
T ss_pred EECCCCCEEEEEEECCC----CCCCEEE--CCCCCEEEEEECCCCCEEEEECCCC-CEEEEEEE---C----CCCCE---
T ss_conf 66375560647873699----8654698--7999989998517873189851571-21789996---8----85110---
Q ss_pred EEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEE--
Q ss_conf 79993599949999789819999888885134542499999827999974999999-999889909999877997226--
Q 000681 1146 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL-AAGFVDGSVRLYDVRTPDMLV-- 1222 (1354)
Q Consensus 1146 ~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~L-vsgs~DGsIrIwDlrs~~~~~-- 1222 (1354)
..+.++++++. .+.++.+.+++..... .+..++.+.. ...+ ..+++|+++ +++..+++|.+||+.+.....
T Consensus 223 -~~~~~dGk~~~-v~~~~v~vvd~~~~~~-v~~~IPvgks--PhGv-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 223 -AAAVKAGNFKT-IGDSKVPVVDGRGESE-FTRYIPVPKN--PHGL-NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp -HHHHHTTCCBC-CTTCCCCEEECSSSCS-SEEEECCBSS--CCCE-EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred -EEEECCCCEEE-ECCCCCEEEECCCCCC-EEEEEECCCC--CCCC-EECCCCCEEEEECCCCCCEEEEEEEHHHHHHHC
T ss_conf -79966999999-6999828998036870-6899717988--6672-689998789990775993899983224457525
Q ss_pred -----EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC---------CCCCEEEEE-----CCCCCEEEE
Q ss_conf -----7416788788885999992299999999997799299996789---------972179991-----579985899
Q 000681 1223 -----CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN---------HKDAYLTID-----AHRGSLSAL 1283 (1354)
Q Consensus 1223 -----~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~---------~~~~i~~l~-----~h~~~ItsL 1283 (1354)
..........-......|.++ +..+.+...|..|..|++.. ....+..+. +|...+.+.
T Consensus 297 ~~~~~~~~~~~~~~glgplh~~fd~~--g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~ 374 (441)
T d1qnia2 297 KIELRDTIVAEPELGLGPLHTTFDGR--GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE 374 (441)
T ss_dssp SSCGGGGEEECCBCCSCEEEEEECSS--SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT
T ss_pred CCCCCEEEEEECCCCCCCCCCEECCC--CEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 68842479960145547665226578--5599852443168972354221332267776568645326689877524542
Q ss_pred EECCCCCEEEEEE---CCC----------CEEEEECCCCEEEEEE
Q ss_conf 9927999899996---899----------1999957993478982
Q 000681 1284 AVHRHAPIIASGS---AKQ----------LIKVFSLEGEQLGTIR 1315 (1354)
Q Consensus 1284 afspdg~~Lasgs---~Dg----------~I~Iwd~~g~~l~~i~ 1315 (1354)
+++|+|++|++++ .|+ .-.+.|++|+.+.-+.
T Consensus 375 t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~ 419 (441)
T d1qnia2 375 SRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVH 419 (441)
T ss_dssp STTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEE
T ss_conf 238988489965744425576788898764426981597579984
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.10 E-value=8e-09 Score=76.49 Aligned_cols=272 Identities=7% Similarity=-0.081 Sum_probs=160.3
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCC--EEEEEECCCE---------
Q ss_conf 37999958999999997-89949999879993678962799999986999998608998--9999968980---------
Q 000681 1044 TKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--LLLVASCNGN--------- 1111 (1354)
Q Consensus 1044 I~sL~fspdg~~Latgs-~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~--~Lvtgs~DG~--------- 1111 (1354)
.....++|||++|++.+ .++.|.++|+.+++....+.... +..+..+.| +++++ +++..+.+..
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~--spdg~t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN--VQAIHGLRL--QKVPKTNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT--CCCEEEEEE--CCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred CCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCCEEE--ECCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 22103268888899973899979999887784755795678--878643487--05699899995667754436766300
Q ss_pred --------EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEEEEECC
Q ss_conf --------999986677785048840102458999711250379993599949999789-81999988888513454249
Q 000681 1112 --------IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPS 1182 (1354)
Q Consensus 1112 --------IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~D-g~I~IWDl~t~~~~i~~l~~ 1182 (1354)
+..+|..+ .+.. ++...+ ..... +.++++++++++++.+ ..+..++..+.. ....+..
T Consensus 150 ~~~~~~~~~~~iD~~t----~~v~--~qI~v~--~~p~~----v~~spdGk~a~vt~~nse~~~~id~~t~~-~~d~i~v 216 (441)
T d1qnia2 150 SLDNSYTMFTAIDAET----MDVA--WQVIVD--GNLDN----TDADYTGKYATSTCYNSERAVDLAGTMRN-DRDWVVV 216 (441)
T ss_dssp CGGGEEEEEEEEETTT----CSEE--EEEEES--SCCCC----EEECSSSSEEEEEESCTTCCSSHHHHTCS-SBCEEEE
T ss_pred CCCCCCCEEEEECCCC----CEEE--EEEECC--CCCCC----EEECCCCCEEEEEECCCCCEEEEECCCCC-EEEEEEE
T ss_conf 1455532388663755----6064--787369--98654----69879999899985178731898515712-1789996
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEE-EEEECCCCEEEE
Q ss_conf 9999827999974999999999889909999877997226741678878888599999229999999-999779929999
Q 000681 1183 SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI-VSASQAGDIQFL 1261 (1354)
Q Consensus 1183 ~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~L-vsgs~DG~I~IW 1261 (1354)
... -..+ ...++|+++.. +.++.+.+++....+ ....+... .....+.++|+ |+++ +++..+++|.+|
T Consensus 217 ~n~--p~~~-~~~~dGk~~~v-~~~~v~vvd~~~~~~-v~~~IPvg----ksPhGv~vSPD--Gkyl~~~~~~~~tvsv~ 285 (441)
T d1qnia2 217 FNV--ERIA-AAVKAGNFKTI-GDSKVPVVDGRGESE-FTRYIPVP----KNPHGLNTSPD--GKYFIANGKLSPTVSVI 285 (441)
T ss_dssp EEH--HHHH-HHHHTTCCBCC-TTCCCCEEECSSSCS-SEEEECCB----SSCCCEEECTT--SCEEEEECTTSSBEEEE
T ss_pred CCC--CCEE-EEECCCCEEEE-CCCCCEEEECCCCCC-EEEEEECC----CCCCCCEECCC--CCEEEEECCCCCCEEEE
T ss_conf 885--1107-99669999996-999828998036870-68997179----88667268999--87899907759938999
Q ss_pred ECCCCC----------CCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC-------C----CEEEEEECCCCC
Q ss_conf 678997----------2179991579985899992799989999689919999579-------9----347898255786
Q 000681 1262 DIRNHK----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-------G----EQLGTIRYHHPS 1320 (1354)
Q Consensus 1262 Di~~~~----------~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~-------g----~~l~~i~~~h~~ 1320 (1354)
|+.+.. ..+.......-.....+|.++|..+.+...|..|..|++. + ..+..+.. |
T Consensus 286 d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v-~-- 362 (441)
T d1qnia2 286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDV-Q-- 362 (441)
T ss_dssp EGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-S--
T ss_pred EEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCC-C--
T ss_conf 8322445752568842479960145547665226578559985244316897235422133226777656864532-6--
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 44456787499999449979999988
Q 000681 1321 FMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1321 fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
+..+|...+.+.+|+|+|++|++++.
T Consensus 363 y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 363 YQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp SCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 68987752454223898848996574
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.1e-07 Score=66.07 Aligned_cols=236 Identities=12% Similarity=0.127 Sum_probs=172.9
Q ss_pred CCCCHHHHHHHHHCHH---HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 9963236788751103---4667999999984179879999886088368898503583445569999999876049001
Q 000681 459 PPEQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 535 (1354)
Q Consensus 459 ~p~~lP~vLq~LlS~~---~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~ 535 (1354)
.++..|.++++|..+. -+..|...|..+ ..++..+...++.|+.|-++++|.++..+.+..++..+..++...+.+
T Consensus 57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 135 (529)
T d1jdha_ 57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 1339999999984799999999999999999-589166999998798999999857979899999999999865132011
Q ss_pred HHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 21433046713465521889883677889999999995099102378875437999999530789999999888999999
Q 000681 536 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 615 (1354)
Q Consensus 536 q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~ 615 (1354)
+......+++...+..|+..+ ++.+..++.+|..+..+....+......+.+..+...+.. .+.+.++..++
T Consensus 136 ~~~~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~~~~ 207 (529)
T d1jdha_ 136 KMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT------YTYEKLLWTTS 207 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHH
T ss_conf 367876588148999887057--6888888999988763004788888760563689999986------10489999999
Q ss_pred HHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99997302443776731036804667432049995788999999964014587778899889988771999999999999
Q 000681 616 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 695 (1354)
Q Consensus 616 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 695 (1354)
-+|..+..+ ++.+...++.++...|..++.++++.++..++.+|..+-..... . .. ......
T Consensus 208 ~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~----------~-~~------~~~~i~ 269 (529)
T d1jdha_ 208 RVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----------Q-EG------MEGLLG 269 (529)
T ss_dssp HHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT----------C-SC------CHHHHH
T ss_pred HHHHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC----------H-HH------HHHCCH
T ss_conf 987511013-32330456543334699986254015553015677750432110----------2-56------640101
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99642057992214899999999998
Q 000681 696 SLLTVVSDGSPLVRAEVAVALARFAF 721 (1354)
Q Consensus 696 ~ll~~~~D~sp~VR~e~~~~l~~~v~ 721 (1354)
.++.+..+..+.++..++.++..+..
T Consensus 270 ~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 270 TLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 44541245428899999998875012
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2e-07 Score=66.24 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=124.4
Q ss_pred CHHHHHHHHHCH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 323678875110--3466799999998417987999988608836889850358-3445569999999876049001214
Q 000681 462 QLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVD 538 (1354)
Q Consensus 462 ~lP~vLq~LlS~--~~rlral~ll~~fld~g~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FI~a~i~~~~~~~q~~ 538 (1354)
-.|-+.++|.+. .-+.+|...++++....+.........|+.+.++++|+.+ ..+.+..++-++..++. +..++..
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 96 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCHHHHH
T ss_conf 999999987299999999999999999845577899987133999999998479999999999999999958-9166999
Q ss_pred HHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33046713465521889883677889999999995099102378875437999999530789999999888999999999
Q 000681 539 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 618 (1354)
Q Consensus 539 l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~L 618 (1354)
.++.++....+..|.+.+ +..+..++-.|+.++.+.+..|......+.+..+..+|+ +++++++..++.+|
T Consensus 97 i~~~g~i~~Li~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCL 167 (529)
T ss_dssp HHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-------CCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-------CCCHHHHHHHHHHH
T ss_conf 998798999999857979--899999999999865132011367876588148999887-------05768888889999
Q ss_pred HHHHCCCHHHHHHHCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9730244377673103680466743204-999578899999996401458777889988998877199999999999999
Q 000681 619 GKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSL 697 (1354)
Q Consensus 619 g~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 697 (1354)
+.+....++.+....+.+....+..++. ...+.++..++-++..+... .+....-.+......+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~---------------~~~~~~~~~~g~~~~L 232 (529)
T d1jdha_ 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---------------SSNKPAIVEAGGMQAL 232 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---------------TTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHH
T ss_conf 8876300478888876056368999998610489999999987511013---------------3233045654333469
Q ss_pred HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 6420579922148999999999
Q 000681 698 LTVVSDGSPLVRAEVAVALARF 719 (1354)
Q Consensus 698 l~~~~D~sp~VR~e~~~~l~~~ 719 (1354)
..+..++++.++..++..+..+
T Consensus 233 ~~ll~~~~~~~~~~a~~~l~~l 254 (529)
T d1jdha_ 233 GLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9986254015553015677750
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.1e-08 Score=70.61 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHH
Q ss_conf 445569999999876049001214330467134655-2188988367788999999999509910237887543799999
Q 000681 515 PELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIR-FLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 593 (1354)
Q Consensus 515 ~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~-~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~ 593 (1354)
.|.|.-+.=.++.++.. .....++.+-||+...+. .|+.++ ++.|.-++.+|+.++.+.+..|......+++..++
T Consensus 31 ~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~--~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 31 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999999999769-7889999986999999999837999--99999999999999988888889999727637999
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 95307899999998889999999999730244377673103680466743204999578899999996401458777889
Q 000681 594 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 673 (1354)
Q Consensus 594 ~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~ 673 (1354)
.+|.. +++|++|.-++.+|+.+..+++..+...++.+....|..++.++++.|+..++.+|+.+.....
T Consensus 108 ~lL~~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~----- 176 (264)
T d1xqra1 108 RLLDR------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP----- 176 (264)
T ss_dssp HHHHH------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-----
T ss_pred HHHHC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCH-----
T ss_conf 99604------9989999999999998742440267899872012688998805865788999999999874457-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98899887719999999999999964205799221489999999999852
Q 000681 674 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 723 (1354)
Q Consensus 674 ~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~~ 723 (1354)
...+ ...+......++.++.++++.+|+.++.++..++...
T Consensus 177 --------~~~~-~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 177 --------EHKG-TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp --------GGHH-HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred --------HHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf --------7888-8887646899999973999899999999999998648
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=2.5e-06 Score=58.26 Aligned_cols=237 Identities=8% Similarity=0.037 Sum_probs=119.2
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEE-EECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 9837999958999999997-899499998799936789-62799999986999998608998999996898099998667
Q 000681 1042 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs-~Dg~I~IWd~~tg~~l~~-l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~ 1119 (1354)
..+..+++.+++.+.++.. ..+.+..++......... +.+. .....+++ ++++.++++....+.+++++..+
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~p~gvav--~~~g~i~v~d~~~~~i~~~~~~~ 87 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL----YQPQGLAV--DGAGTVYVTDFNNRVVTLAAGSN 87 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC----CSCCCEEE--CTTCCEEEEETTTEEEEECTTCS
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC----CCCEEEEE--CCCCCEEEEEEEECEEEEEEECC
T ss_conf 9878899969999999971899889999389966897436986----68408999--38998898631000035542112
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 77850488401024589997112503799935999499997898199998888851345424999998279999749999
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1199 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~ 1199 (1354)
...+ .... ......+ +++.+++..+++-.....+..++..... . ..+.........++ ...++++
T Consensus 88 ----~~~~---~~~~-~~~~p~~----iavd~~g~i~v~d~~~~~~~~~~~~~~~-~-~~~~~~~~~~p~~i-~~~~~g~ 152 (260)
T d1rwia_ 88 ----NQTV---LPFD-GLNYPEG----LAVDTQGAVYVADRGNNRVVKLAAGSKT-Q-TVLPFTGLNDPDGV-AVDNSGN 152 (260)
T ss_dssp ----CCEE---CCCC-SCCSEEE----EEECTTCCEEEEEGGGTEEEEECTTCSS-C-EECCCCSCCSCCEE-EECTTCC
T ss_pred ----CEEE---EEEE-EEEECCC----CCCCCCCEEEEECCCCCCCCCCCCCCCE-E-EEEEECCCCCCCEE-EECCCCC
T ss_conf ----0000---0010-0000000----0245532057503355532112322220-1-22320366775205-4548998
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-CCCC
Q ss_conf 999998899099998779972267416788788885999992299999999997799299996789972179991-5799
Q 000681 1200 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRG 1278 (1354)
Q Consensus 1200 ~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~-~h~~ 1278 (1354)
.+++...++.|..+|........... ........+++.++ +.++++...++.|..++.... ....+. ..-.
T Consensus 153 ~~v~~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~gi~~d~~--g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~~ 224 (260)
T d1rwia_ 153 VYVTDTDNNRVVKLEAESNNQVVLPF----TDITAPWGIAVDEA--GTVYVTEHNTNQVVKLLAGST--TSTVLPFTGLN 224 (260)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECCC----SSCCSEEEEEECTT--CCEEEEETTTTEEEEECTTCS--CCEECCCCSCC
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEC----CCCCCCCCCEEEEE--EEEEEEECCCCEEEEEECCCC--EEEEECCCCCC
T ss_conf 86410256433222343100122210----11478763123100--013432148998999969997--69997069989
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 85899992799989999689919999579
Q 000681 1279 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1279 ~ItsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
....+++++++.++++-..++.|+.++..
T Consensus 225 ~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 225 TPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CEEEEEEECCCCEEEEECCCCEEEEEECC
T ss_conf 81799990899999997999989999599
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=2.8e-06 Score=57.92 Aligned_cols=234 Identities=9% Similarity=0.062 Sum_probs=148.1
Q ss_pred CEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEE
Q ss_conf 86999998608998999996-89809999866777850488401024589997112503799935999499997-89819
Q 000681 1088 GISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSI 1165 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I 1165 (1354)
.-.++++ ++++.+.++.. ..+.+..++... . .... ....+ ...... +++++++. ++++. ..+.+
T Consensus 15 ~P~~vav--d~dG~i~v~~~~~~~~i~~~~~~~--~-~~~~---~~~~~-~~~p~g----vav~~~g~-i~v~d~~~~~i 80 (260)
T d1rwia_ 15 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGS--T-GTTV---LPFNG-LYQPQG----LAVDGAGT-VYVTDFNNRVV 80 (260)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEEC-------CEEE---CCCCS-CCSCCC----EEECTTCC-EEEEETTTEEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCCEEEEECCCC--C-EEEE---ECCCC-CCCCEE----EEECCCCC-EEEEEEEECEE
T ss_conf 8788999--699999999718998899993899--6-6897---43698-668408----99938998-89863100003
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99988888513454249999982799997499999999988990999987799722674167887888859999922999
Q 000681 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1166 ~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~ 1245 (1354)
++++..... .+..... .....++ +..++++++++...+..+..++............. ......+++.++
T Consensus 81 ~~~~~~~~~-~~~~~~~--~~~p~~i-avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~-- 150 (260)
T d1rwia_ 81 TLAAGSNNQ-TVLPFDG--LNYPEGL-AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG----LNDPDGVAVDNS-- 150 (260)
T ss_dssp EECTTCSCC-EECCCCS--CCSEEEE-EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS----CCSCCEEEECTT--
T ss_pred EEEEECCCE-EEEEEEE--EEECCCC-CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCCCEEEECCC--
T ss_conf 554211200-0000100--0000000-24553205750335553211232222012232036----677520545489--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 99999997799299996789972179991579985899992799989999689919999579934789825578644456
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1325 (1354)
Q Consensus 1246 g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~ 1325 (1354)
++.+++...++.|..++.... .........-.....+++.+++.++++....+.|..++.++.....+.. . .
T Consensus 151 g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~--~-----~ 222 (260)
T d1rwia_ 151 GNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--T-----G 222 (260)
T ss_dssp CCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC--C-----S
T ss_pred CCEEEECCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECC--C-----C
T ss_conf 988641025643322234310-0122210114787631231000134321489989999699976999706--9-----9
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 7874999994499799999889809991
Q 000681 1326 IGSVNCLTFHPYQVLLAAGSADACVSIH 1353 (1354)
Q Consensus 1326 ~~~V~sLafspdg~~Lasgs~Dg~I~IW 1353 (1354)
......+++++++.++++-..++.|+.+
T Consensus 223 ~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 223 LNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp CCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 8981799990899999997999989999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.91 E-value=2.8e-06 Score=57.89 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 8379999589999999978994999987999367896
Q 000681 1043 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1079 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l 1079 (1354)
.+..+++.++++++++-..+..|++||.+ ++.+..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~ 59 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF 59 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEE
T ss_conf 90079994999899997998989999699-9999981
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.86 E-value=4.2e-06 Score=56.65 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=130.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 99983799995899999999789949999879993678962799999986999998608998999996898099998667
Q 000681 1040 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1119 (1354)
Q Consensus 1040 ~~~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~ 1119 (1354)
.+..+..+++.++|.++++...++.|..|+.+ ++. ..+.... ..+.+++| +++++++++...++.+..|+...
T Consensus 26 ~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~---~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 26 VNTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVE---GKVSGLAF--TSNGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECS---SEEEEEEE--CTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCCCCCCEEECCCCCEEEEECCCCEEEEEECC-CCE-EEEECCC---CCCCEEEE--CCCCCEEEEECCCCEEEEEEECC
T ss_conf 99884787799998899996889989999089-988-9997179---98536898--67788699832895378887101
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC---------CCCCCCEEE
Q ss_conf 77850488401024589997112503799935999499997898199998888851345424---------999998279
Q 000681 1120 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP---------SSSDCSISA 1190 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~---------~~~~~~Vts 1190 (1354)
..+....+ .... ....... +.+.+++..+++...++.+..+|..... ...... .........
T Consensus 99 ~~~~~~~~---~~~~-~~~~~n~----i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 99 SDGTVETL---LTLP-DAIFLNG----ITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp TTSCEEEE---EECT-TCSCEEE----EEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEE
T ss_pred CCCCEEEC---CCCC-CCCCCCE----EEECCCCCEEEECCCCCCCEEEECCCCC-CEEEECCCCCCEEECCCCCCCCCC
T ss_conf 11101210---2357-8632216----6771579787503565541024216873-036751886401431576322432
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCE
Q ss_conf 99974999999999889909999877997226741678878888599999229999999999779929999678997217
Q 000681 1191 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1270 (1354)
Q Consensus 1191 I~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i 1270 (1354)
+. .. .+..+++.+..+.|..++........... .. ........+++.++ |+++++...++.|..++.......+
T Consensus 170 i~-~~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~pdgia~d~d--G~l~va~~~~~~V~~i~p~G~~~~~ 243 (302)
T d2p4oa1 170 LK-RF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPE-IF-VEQTNIDDFAFDVE--GNLYGATHIYNSVVRIAPDRSTTII 243 (302)
T ss_dssp EE-EE-TTEEEEEETTTTEEEEEEBCTTSCBCCCE-EE-EESCCCSSEEEBTT--CCEEEECBTTCCEEEECTTCCEEEE
T ss_pred CC-CC-CCCEEEECCCCCEEEECCCCCCCCCCCCC-CC-CCCCCCCCEEECCC--CCEEEEECCCCCEEEECCCCCEEEE
T ss_conf 01-16-98304403788769863443333234531-01-58998752378799--9999997489918998789978999
Q ss_pred EEEECCCCCEEEEEE---CCCCCEEEEEECC
Q ss_conf 999157998589999---2799989999689
Q 000681 1271 LTIDAHRGSLSALAV---HRHAPIIASGSAK 1298 (1354)
Q Consensus 1271 ~~l~~h~~~ItsLaf---spdg~~Lasgs~D 1298 (1354)
......-...++++| .+|++.|..++..
T Consensus 244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EECCCCCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 9637898882489970878878989999889
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.86 E-value=4.4e-06 Score=56.53 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=156.9
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECC
Q ss_conf 93678962799999986999998608998999996898099998667778504884010245899971125037999359
Q 000681 1073 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1152 (1354)
Q Consensus 1073 g~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~ 1152 (1354)
.+.+..+... ..+..+++ .+|++++++...++.|..|+.. +.... +......+.+ +++.++
T Consensus 18 ~~v~~~~p~~----~~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~---g~~~~------~~~~~~~~~g----la~~~d 78 (302)
T d2p4oa1 18 AKIITSFPVN----TFLENLAS--APDGTIFVTNHEVGEIVSITPD---GNQQI------HATVEGKVSG----LAFTSN 78 (302)
T ss_dssp EEEEEEECTT----CCEEEEEE--CTTSCEEEEETTTTEEEEECTT---CCEEE------EEECSSEEEE----EEECTT
T ss_pred CCEEEECCCC----CCCCCEEE--CCCCCEEEEECCCCEEEEEECC---CCEEE------EECCCCCCCE----EEECCC
T ss_conf 2078888899----88478779--9998899996889989999089---98899------9717998536----898677
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC----
Q ss_conf 9949999789819999888885134542-49999982799997499999999988990999987799722674167----
Q 000681 1153 SGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---- 1227 (1354)
Q Consensus 1153 ~~~Llsag~Dg~I~IWDl~t~~~~i~~l-~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~---- 1227 (1354)
+..+++...++.+..|+..........+ ..........+ .+.++++++++.+.++.+..+|...+.........
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i-~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI-TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE-EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEE-EECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCE
T ss_conf 8869983289537888710111101210235786322166-771579787503565541024216873036751886401
Q ss_pred --CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC--EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf --887888859999922999999999977992999967899721--7999157998589999279998999968991999
Q 000681 1228 --HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1303 (1354)
Q Consensus 1228 --~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~--i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~I 1303 (1354)
..........+.+.. +..+++.+..+.|..++....... ...+. .......+++.++|.++++...++.|..
T Consensus 158 ~~~~~~~~~~ngi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 158 SNSESVFPAANGLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp SSTTCCSCSEEEEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred EECCCCCCCCCCCCCCC---CCEEEECCCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCEEECCCCCEEEEECCCCCEEE
T ss_conf 43157632243201169---8304403788769863443333234531015-8998752378799999999748991899
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEEE---ECCCCEEEEEECC
Q ss_conf 9579934789825578644456787499999---4499799999889
Q 000681 1304 FSLEGEQLGTIRYHHPSFMAQKIGSVNCLTF---HPYQVLLAAGSAD 1347 (1354)
Q Consensus 1304 wd~~g~~l~~i~~~h~~fl~~~~~~V~sLaf---spdg~~Lasgs~D 1347 (1354)
++.+++....... .. .....++++| .+|++.|.+++..
T Consensus 234 i~p~G~~~~~~~~-~~-----~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 234 IAPDRSTTIIAQA-EQ-----GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECTTCCEEEEECG-GG-----TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEEEC-CC-----CCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 8789978999963-78-----98882489970878878989999889
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.85 E-value=4.7e-06 Score=56.33 Aligned_cols=259 Identities=9% Similarity=0.064 Sum_probs=117.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE---CCCEEEEEECC
Q ss_conf 983799995899999999789949999879993678962799999986999998608998999996---89809999866
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS---CNGNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs---~DG~IrIWdl~ 1118 (1354)
..++-|.|++++++|.++. .+.+..|.+.....+.....+.. +.....+.+ +++++.++... ..+.|..+...
T Consensus 40 ~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~-~~~p~~v~~--~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPI-GGHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEEC-CSSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCEEEECCCCCEEEEEE-CCCEEEEEEECCCCEEEEEEECC-CCCCEEEEE--CCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 9977799948989999993-89478999908997698764128-998678998--7899879999932799789986745
Q ss_pred CCCCCCEEEE---------EEE-CCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEE--EEEEC-CCC
Q ss_conf 7778504884---------010-24589997112503799935999499997-8981999988888513--45424-999
Q 000681 1119 DQKDKQKLVT---------AFS-SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQM--VNPIP-SSS 1184 (1354)
Q Consensus 1119 ~~~~~~~lvs---------~~~-~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~--i~~l~-~~~ 1184 (1354)
...+...... ... ........+.+ +.|+|++++++++. ....|.+|+....... ..... ...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~----v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG----MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE----EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEE----EEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCC
T ss_conf 7887420686640330047646755688981159----788899998998207998799997068871665251111278
Q ss_pred CCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEE-EE---EC-----------CCCCCCCCEEEEEEECCCCCCE
Q ss_conf 998279999749999999998-89909999877997226-74---16-----------7887888859999922999999
Q 000681 1185 DCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLV-CS---TR-----------PHTQQVERVVGISFQPGLDPAK 1248 (1354)
Q Consensus 1185 ~~~VtsI~~~s~~g~~Lvsgs-~DGsIrIwDlrs~~~~~-~~---~~-----------~~~~h~~~I~si~fsp~~~g~~ 1248 (1354)
+.....+ .++++++++.+.. .++.|.+|+........ .. .. ....+......+.++|+ +++
T Consensus 192 g~gPr~i-~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd--G~~ 268 (365)
T d1jofa_ 192 GDHPRWV-AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS--GKY 268 (365)
T ss_dssp TCCEEEE-EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT--SSE
T ss_pred CCCEEEE-EECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC--CCE
T ss_conf 8740899-9889986699951589989999955987537787312402455655666544443577631699899--997
Q ss_pred EEEEEC------CCCEEEEECCCCCCCEEEE-----ECCCCCEEEEEECC-CCCEEEEE-ECCCCEEEEECCCCEE
Q ss_conf 999977------9929999678997217999-----15799858999927-99989999-6899199995799347
Q 000681 1249 IVSASQ------AGDIQFLDIRNHKDAYLTI-----DAHRGSLSALAVHR-HAPIIASG-SAKQLIKVFSLEGEQL 1311 (1354)
Q Consensus 1249 Lvsgs~------DG~I~IWDi~~~~~~i~~l-----~~h~~~ItsLafsp-dg~~Lasg-s~Dg~I~Iwd~~g~~l 1311 (1354)
++++.. .+.|..|++.......... ........+++++| +|++|+++ ..++.|.+|+.+++.+
T Consensus 269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l 344 (365)
T d1jofa_ 269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCCC
T ss_conf 8997135787542279999856887144676766777679986478964899999999967999499999828867
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=6.9e-06 Score=55.09 Aligned_cols=236 Identities=11% Similarity=0.079 Sum_probs=131.9
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECC-CE--EEEEECCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 4999987999367896279999998699999860899899999689-80--99998667778504884010245899971
Q 000681 1064 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GN--IRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1140 (1354)
Q Consensus 1064 ~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~D-G~--IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1140 (1354)
.|.|.|.+... ...+..+. ..+.+..| +|||+.|+..... +. +.+.+... +.... +..+....
T Consensus 20 ~l~i~d~dG~~-~~~l~~~~---~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~ 85 (269)
T d2hqsa1 20 ELRVSDYDGYN-QFVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQ------VASFPRHN 85 (269)
T ss_dssp EEEEEETTSCS-CEEEEEES---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTT--CCEEE------EECCSSCE
T ss_pred EEEEECCCCCC-CEEEECCC---CCEEEEEE--CCCCCEEEEEEEECCCCCEEEEECCC--CCEEE------EEEEECCC
T ss_conf 99999289997-67986589---84260388--78999899998152675134431136--75067------76420245
Q ss_pred CCCEEEEEEECCCCEEEEEE-CCCE--EEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE-EEEECCCE--EEEEE
Q ss_conf 12503799935999499997-8981--9999888885134542499999827999974999999-99988990--99998
Q 000681 1141 RCSNVVVDWQQQSGYLYASG-EVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL-AAGFVDGS--VRLYD 1214 (1354)
Q Consensus 1141 ~si~~~i~~sp~~~~Llsag-~Dg~--I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~L-vsgs~DGs--IrIwD 1214 (1354)
.. ..|++++..++... .++. +..+...... .......... .... ....++..+ ++...+|. |...+
T Consensus 86 ~~----~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 86 GA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSN-NTEP-TWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp EE----EEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSC-EEEE-EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CC----CEECCCCCEEEEEEECCCCCCEEECCCCCCC--CEEEEECCCC-CCCC-CCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 43----0244889864676402786410000222122--0000101442-1145-4345544330000126874386542
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 77997226741678878888599999229999999999779-92999967899721799915799858999927999899
Q 000681 1215 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1293 (1354)
Q Consensus 1215 lrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~D-G~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~La 1293 (1354)
..... ..... ..........|+|+ +..++..+.+ +...+|......... ....+.+......|+|+|+.|+
T Consensus 158 ~~~~~-~~~~~----~~~~~~~~~~~spd--g~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~ 229 (269)
T d2hqsa1 158 INGGA-PQRIT----WEGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVI 229 (269)
T ss_dssp TTSSC-CEECC----CSSSEEEEEEECTT--SSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEE
T ss_pred CCCCC-CEEEE----CCCCCCCCCCCCCC--CCEEEEEEECCCCEEEEEEECCCCCC-EEEECCCCCCCEEECCCCCEEE
T ss_conf 13310-00100----01222234322345--43057786058801256760356440-5850686544558989999999
Q ss_pred EEEC---CCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9968---9919999579934789825578644456787499999449
Q 000681 1294 SGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1337 (1354)
Q Consensus 1294 sgs~---Dg~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspd 1337 (1354)
-.+. ...|.+++.+|.....+.. .. +.+...+|+|.
T Consensus 230 f~s~~~~~~~l~~~~~dg~~~~~lt~-~~-------g~~~~p~WSP~ 268 (269)
T d2hqsa1 230 YSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 268 (269)
T ss_dssp EEEEETTEEEEEEEETTSCCEEECCC-SS-------SEEEEEEECCC
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEC-CC-------CCEEEEEECCC
T ss_conf 99817998479999999997799857-99-------85883782898
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.7e-06 Score=58.01 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998304899935331000233311
Q 000681 835 SQCVLAMCTLAKDPSPRIATLGRRVLSII 863 (1354)
Q Consensus 835 ~~~~~~l~~L~~dp~~~v~~~a~~~~~~i 863 (1354)
..+...+..|..|+..+|...|+..++.+
T Consensus 557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 557 SEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999975799877999999999987
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.68 E-value=1.5e-05 Score=52.65 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=149.4
Q ss_pred EEEEEEC--CCCEEEEE--CCCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEE
Q ss_conf 9999978--99499998--799936--78962799999986999998608998999996898099998667778504884
Q 000681 1055 IVVAADE--NERIKIWN--YEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT 1128 (1354)
Q Consensus 1055 ~Latgs~--Dg~I~IWd--~~tg~~--l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs 1128 (1354)
.|++|+. .+.|.++. .++++. +....... ...++.|++ +++++.|+++.. +.+..|.+... +......
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~--~~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~-~~~~~~~ 77 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQ--DEPISWMTF--DHERKNIYGAAM-KKWSSFAVKSP-TEIVHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCT--TCCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEET-TEEEEEE
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCC--CCCCCEEEE--CCCCCEEEEEEC-CCEEEEEEECC-CCEEEEE
T ss_conf 99999314999899999858889389845445168--999777999--489899999938-94789999089-9769876
Q ss_pred EEECCCCCCCCCCCCEEEEEEECCCCEEEEEE---CCCEEEEEECCCCCE---------------EEEEECCCCCCCEEE
Q ss_conf 01024589997112503799935999499997---898199998888851---------------345424999998279
Q 000681 1129 AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQ---------------MVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1129 ~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag---~Dg~I~IWDl~t~~~---------------~i~~l~~~~~~~Vts 1190 (1354)
. ... ...... +.+++++..+++.. ..+.|..+.+..... ...........-+.+
T Consensus 78 ~-~~~---~~~p~~----v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~ 149 (365)
T d1jofa_ 78 S-HPI---GGHPRA----NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp E-EEC---CSSGGG----GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred E-ECC---CCCCEE----EEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEE
T ss_conf 4-128---998678----99878998799999327997899867457887420686640330047646755688981159
Q ss_pred EEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEE--ECCCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 9997499999999988-990999987799722674--16788788885999992299999999997-7992999967899
Q 000681 1191 LTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCS--TRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNH 1266 (1354)
Q Consensus 1191 I~~~s~~g~~Lvsgs~-DGsIrIwDlrs~~~~~~~--~~~~~~h~~~I~si~fsp~~~g~~Lvsgs-~DG~I~IWDi~~~ 1266 (1354)
+ .++|+|+++++... ...|.+|+.......... .... ........+.|+|+ ++++.+.. .+++|.+|+....
T Consensus 150 v-~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~pd--g~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 150 M-VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPT--GNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp E-EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTT
T ss_pred E-EECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEC-CCCCCEEEEEECCC--CCEEEEECCCCCEEEEEEECCC
T ss_conf 7-888999989982079987999970688716652511112-78874089998899--8669995158998999995598
Q ss_pred CCC-EEEEEC-----------------CCCCEEEEEECCCCCEEEEEEC-C-----CCEEEEECC--CCEEEEEECCCCC
Q ss_conf 721-799915-----------------7998589999279998999968-9-----919999579--9347898255786
Q 000681 1267 KDA-YLTIDA-----------------HRGSLSALAVHRHAPIIASGSA-K-----QLIKVFSLE--GEQLGTIRYHHPS 1320 (1354)
Q Consensus 1267 ~~~-i~~l~~-----------------h~~~ItsLafspdg~~Lasgs~-D-----g~I~Iwd~~--g~~l~~i~~~h~~ 1320 (1354)
+.. +..... +......+.++|+|++++++.. + ..|..|+.. +...........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~- 304 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT- 304 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE-
T ss_conf 7537787312402455655666544443577631699899997899713578754227999985688714467676677-
Q ss_pred CCCCCCCCEEEEEEEC-CCCEEEEEEC-CCEEEECC
Q ss_conf 4445678749999944-9979999988-98099919
Q 000681 1321 FMAQKIGSVNCLTFHP-YQVLLAAGSA-DACVSIHS 1354 (1354)
Q Consensus 1321 fl~~~~~~V~sLafsp-dg~~Lasgs~-Dg~I~IWd 1354 (1354)
........+++++| +|++|++++. ++.|.+|+
T Consensus 305 --~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 305 --PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp --SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred --ECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf --7679986478964899999999967999499999
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.65 E-value=1.8e-05 Score=52.11 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=159.6
Q ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEE--ECCCEE
Q ss_conf 869999986089989999968980999986677785048840102458999711250379993599949999--789819
Q 000681 1088 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS--GEVSSI 1165 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsa--g~Dg~I 1165 (1354)
....+++ +++++++++-..+..|++|+.. ++. +..+......... ......+.+..+.+..++. +.++.|
T Consensus 24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~---G~~--~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKE---GRF--KFQFGECGKRDSQ-LLYPNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp CEEEEEE--CTTCCEEEEEGGGTEEEEECTT---SCE--EEEECCBSSSTTC-BSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCEEEEEECC---CCE--EEEECCCCCCCCC-CCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 9007999--4999899997998989999699---999--9981665788664-226630001234455200004775310
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99988888513454249999982799997499999999988990999987799722674167887888859999922999
Q 000681 1166 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1245 (1354)
Q Consensus 1166 ~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~ 1245 (1354)
..++.. +. ....+..........+ ...+++.++++....+.+.+++.. ++ ....+ ....+......+++.++
T Consensus 96 ~~~~~~-g~-~~~~~~~~~~~~p~~~-avd~~G~i~v~~~~~~~~~~~~~~-g~-~~~~~-g~~~~~~~~~~i~~d~~-- 167 (279)
T d1q7fa_ 96 QIYNQY-GQ-FVRKFGATILQHPRGV-TVDNKGRIIVVECKVMRVIIFDQN-GN-VLHKF-GCSKHLEFPNGVVVNDK-- 167 (279)
T ss_dssp EEECTT-SC-EEEEECTTTCSCEEEE-EECTTSCEEEEETTTTEEEEECTT-SC-EEEEE-ECTTTCSSEEEEEECSS--
T ss_pred CCCCCC-CC-CEEECCCCCCCCCCEE-CCCCCCCEEEEEECCCEEEEECCC-CC-EEECC-CCCCCCCCCCEEEECCC--
T ss_conf 000025-63-0240388864254200-001478479996326325676268-75-01002-20010256624320120--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE--CCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEEEEECCCCCCC
Q ss_conf 99999997799299996789972179991--57998589999279998999968-9919999579934789825578644
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLEGEQLGTIRYHHPSFM 1322 (1354)
Q Consensus 1246 g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~--~h~~~ItsLafspdg~~Lasgs~-Dg~I~Iwd~~g~~l~~i~~~h~~fl 1322 (1354)
+..+++....+.|++||... +.+.++. +.......+++.++++++++-+. ++.|.+|+.+|+.+.++.. ..
T Consensus 168 g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~-~~--- 241 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-KV--- 241 (279)
T ss_dssp SEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE-SS---
T ss_pred EEEEEEECCCCCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEC-CC---
T ss_conf 01786201355100230479--4445301132114876232314786999978998089999999999999968-88---
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45678749999944997999998898099919
Q 000681 1323 AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1354 (1354)
Q Consensus 1323 ~~~~~~V~sLafspdg~~Lasgs~Dg~I~IWd 1354 (1354)
.......+++.+++.+++ ++.++.|++|.
T Consensus 242 --~~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 242 --KHAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp --CCSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred --CCCCEEEEEEECCCCEEE-EECCCEEEEEE
T ss_conf --889883799908991999-91899699987
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.3e-06 Score=58.51 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=20.8
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999983048999353310002333110
Q 000681 835 SQCVLAMCTLAKDPSPRIATLGRRVLSIIG 864 (1354)
Q Consensus 835 ~~~~~~l~~L~~dp~~~v~~~a~~~~~~i~ 864 (1354)
..++..++.+..||.|.|...+-+.+..+.
T Consensus 518 ~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999998859998799999999999999
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.4e-05 Score=52.83 Aligned_cols=261 Identities=16% Similarity=0.062 Sum_probs=143.7
Q ss_pred HHHHHHHHHCCCCCC---CCCCCCHHHHHHHHHC----HHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCHHHHHHHHCCC
Q ss_conf 785479872279888---8999632367887511----0346679999999841798799-9988608836889850358
Q 000681 442 QLTAFEVWLDHGSEH---KKPPEQLPIVLQVLLS----QCHRFRALVLLGRFLDMGPWAV-DLALSVGIFPYVLKLLQTT 513 (1354)
Q Consensus 442 qLtafe~~L~~g~~~---~~~p~~lP~vLq~LlS----~~~rlral~ll~~fld~g~wAv-~lal~~gifpyvlklL~s~ 513 (1354)
.+.++..+....... .....+++++++.|.+ ...|..++..+..++...+--. .......+++.+..+++++
T Consensus 149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (458)
T d1ibrb_ 149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 228 (458)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99888898763141000233889999999986154567999999999999998861324566777777676688772599
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC---------------
Q ss_conf 34455699999998760490012143304671346552188988367788999999999509910---------------
Q 000681 514 TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR--------------- 578 (1354)
Q Consensus 514 ~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~--------------- 578 (1354)
..+.|..+.-.+..|+..++.--..-+.+....++...+.+.+ ++.+.-++-.+..+++....
T Consensus 229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 306 (458)
T d1ibrb_ 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 306 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999871999998887789999999843545--99999999999998998899998503678764189
Q ss_pred -----HHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHH
Q ss_conf -----237887543799999953078999999988899999999997302443776731036804667432049995788
Q 000681 579 -----GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 653 (1354)
Q Consensus 579 -----gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VR 653 (1354)
.-....-..+...+...+.+....+.+....+|.++.-+++.+....++.- + ..+...+...++|+.+.||
T Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r 382 (458)
T d1ibrb_ 307 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYR 382 (458)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHCCCCHHHH
T ss_conf 99999999988998726677640001021011223399999999999987551755---6-6789999998569998999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999964014587778899889988771999999999999996420579922148999999999985
Q 000681 654 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 722 (1354)
Q Consensus 654 aa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~v~~ 722 (1354)
.+++++|+.+......... ..+ -..+...++....|.++.||..++.+++++...
T Consensus 383 ~aal~~l~~i~~~~~~~~~------~~~--------l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEPSQL------KPL--------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHTSSSSCTTTT------CTT--------TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHH------HHH--------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999975477678------988--------999999999884899899999999999999997
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.38 E-value=8.1e-05 Score=47.28 Aligned_cols=247 Identities=11% Similarity=0.086 Sum_probs=129.2
Q ss_pred CCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEEECCC-CCCCCEEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 98379999589999999978-------9949999879993678962799-999986999998608998999996898099
Q 000681 1042 KGTKTALLQPFSPIVVAADE-------NERIKIWNYEEDTLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIR 1113 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~-------Dg~I~IWd~~tg~~l~~l~~h~-~~~~~ItsL~f~~s~d~~~Lvtgs~DG~Ir 1113 (1354)
..+..++|.+++++.++... ++.|..|+..++.......... ...+.-..+.| .++++.++++...+.|.
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~--~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE--ECCCCEEEEEECCCEEE
T ss_conf 8971739969999999987540234529999999899995999977765567885306999--07999899997798399
Q ss_pred EEECCCCCCCCEEEEEEECCCCCC-CCCCCCEEEEEEECCCCEEEEEEC---------------CCEEEEEECCCCCEEE
Q ss_conf 998667778504884010245899-971125037999359994999978---------------9819999888885134
Q 000681 1114 IWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGE---------------VSSIMLWDLEKEQQMV 1177 (1354)
Q Consensus 1114 IWdl~~~~~~~~lvs~~~~l~~h~-~~V~si~~~i~~sp~~~~Llsag~---------------Dg~I~IWDl~t~~~~i 1177 (1354)
..+... +...+. .....+.. ..... +.+.+++...++-.. .|.|..++..... .
T Consensus 96 ~~~~~g--~~~~~~--~~~~~g~~~~~pnd----l~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~--~ 165 (314)
T d1pjxa_ 96 VVQTDG--TFEEIA--KKDSEGRRMQGCND----CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM--I 165 (314)
T ss_dssp EEETTS--CEEECC--SBCTTSCBCBCCCE----EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE--E
T ss_pred EEECCC--CEEEEE--ECCCCCCCCCCCCE----EEECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEECCCE--E
T ss_conf 994777--479997--33432454578727----8988899899914866754320110002688438999525740--3
Q ss_pred EEECCCCCCCEEEEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEEE--EECCCC-CCCCCEEEEEEECCCCCCEE
Q ss_conf 5424999998279999749999-----999998899099998779972267--416788-78888599999229999999
Q 000681 1178 NPIPSSSDCSISALTASQVHGG-----QLAAGFVDGSVRLYDVRTPDMLVC--STRPHT-QQVERVVGISFQPGLDPAKI 1249 (1354)
Q Consensus 1178 ~~l~~~~~~~VtsI~~~s~~g~-----~Lvsgs~DGsIrIwDlrs~~~~~~--~~~~~~-~h~~~I~si~fsp~~~g~~L 1249 (1354)
.... .... -+.+ .++++++ ++++.+..+.|..||+........ .+.... ........+++..+ |++.
T Consensus 166 ~~~~-~~~~-pNGi-~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~--Gnly 240 (314)
T d1pjxa_ 166 QVDT-AFQF-PNGI-AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED--NNLL 240 (314)
T ss_dssp EEEE-EESS-EEEE-EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT--CCEE
T ss_pred EEEC-CCCE-EEEE-EECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECC--CCEE
T ss_conf 7507-8532-2136-99788776303799986024311776116765430156899713356664102578347--8579
Q ss_pred EEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEEC
Q ss_conf 99977992999967899721799915799858999927999-8999968991999957
Q 000681 1250 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1306 (1354)
Q Consensus 1250 vsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~-~Lasgs~Dg~I~Iwd~ 1306 (1354)
++....+.|.+||...+ .....+.......++++|.++++ ++++.+.++.|..++.
T Consensus 241 Va~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 241 VANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEECCCCEEEEEECCCC-EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 99827999999969999-7999997999987899992898999999878991999978
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=0.00014 Score=45.65 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=15.2
Q ss_pred CEEEEEECCCCCEEEEEECC---CCEEEEE-CCCCEEEEEE
Q ss_conf 85899992799989999689---9199995-7993478982
Q 000681 1279 SLSALAVHRHAPIIASGSAK---QLIKVFS-LEGEQLGTIR 1315 (1354)
Q Consensus 1279 ~ItsLafspdg~~Lasgs~D---g~I~Iwd-~~g~~l~~i~ 1315 (1354)
....+.|+|++.+++..... -.+.+++ .+++.+..+.
T Consensus 411 ~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 411 TYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEC
T ss_conf 87999999999999998006999849999999997999973
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.22 E-value=0.00018 Score=44.67 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=130.0
Q ss_pred CEEEEEEEEECCCCEEEEEEC-------CCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 869999986089989999968-------9809999866777850488401024589997112503799935999499997
Q 000681 1088 GISKLCLVNELDVSLLLVASC-------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1088 ~ItsL~f~~s~d~~~Lvtgs~-------DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag 1160 (1354)
..-.++| .+++++.++... +|.|..|+..+ +..... ..............+.+.++++.++++.
T Consensus 19 g~EGpa~--d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~-----~~~~~~~~~g~P~Gl~~~~dg~~l~vad 89 (314)
T d1pjxa_ 19 GAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVI-----CKPEVNGYGGIPAGCQCDRDANQLFVAD 89 (314)
T ss_dssp TCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEE-----ECCEETTEECCEEEEEECSSSSEEEEEE
T ss_pred CCEEEEE--ECCCCEEEEECCCCCCCCCCCEEEEEECCC--CCEEEE-----ECCCCCCCCCCCEEEEEECCCCEEEEEE
T ss_conf 9717399--699999999875402345299999998999--959999-----7776556788530699907999899997
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCC---CEEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCCEEE
Q ss_conf 89819999888885134542499999---82799997499999999988---------------9909999877997226
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPSSSDC---SISALTASQVHGGQLAAGFV---------------DGSVRLYDVRTPDMLV 1222 (1354)
Q Consensus 1161 ~Dg~I~IWDl~t~~~~i~~l~~~~~~---~VtsI~~~s~~g~~Lvsgs~---------------DGsIrIwDlrs~~~~~ 1222 (1354)
..+.|..+|..... ........... ..+.+ .+.++|++.++... +|.|..++.. ++ ..
T Consensus 90 ~~~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl-~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~-~~ 165 (314)
T d1pjxa_ 90 MRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MI 165 (314)
T ss_dssp TTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EE
T ss_pred CCCEEEEEECCCCE-EEEEECCCCCCCCCCCCEE-EECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEEC-CC-EE
T ss_conf 79839999477747-9997334324545787278-988899899914866754320110002688438999525-74-03
Q ss_pred EEECCCCCCCCCEEEEEEECCCCCC-----EEEEEECCCCEEEEECCCCCCCEE-----EEEC-CCCCEEEEEECCCCCE
Q ss_conf 7416788788885999992299999-----999997799299996789972179-----9915-7998589999279998
Q 000681 1223 CSTRPHTQQVERVVGISFQPGLDPA-----KIVSASQAGDIQFLDIRNHKDAYL-----TIDA-HRGSLSALAVHRHAPI 1291 (1354)
Q Consensus 1223 ~~~~~~~~h~~~I~si~fsp~~~g~-----~Lvsgs~DG~I~IWDi~~~~~~i~-----~l~~-h~~~ItsLafspdg~~ 1291 (1354)
...... ..-..++|+++ +. ++++-+..+.|..||+........ .+.. .......+++..+|++
T Consensus 166 ~~~~~~----~~pNGi~~~~d--~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnl 239 (314)
T d1pjxa_ 166 QVDTAF----QFPNGIAVRHM--NDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp EEEEEE----SSEEEEEEEEC--TTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred EEECCC----CEEEEEEECCC--CCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCE
T ss_conf 750785----32213699788--776303799986024311776116765430156899713356664102578347857
Q ss_pred EEEEECCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE-EEEECCCEEEEC
Q ss_conf 9999689919999579-9347898255786444567874999994499799-999889809991
Q 000681 1292 IASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIH 1353 (1354)
Q Consensus 1292 Lasgs~Dg~I~Iwd~~-g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~L-asgs~Dg~I~IW 1353 (1354)
+++....+.|.+|+.+ +..+..+.. . ....++++|.++++.| ++.+.+|.|..+
T Consensus 240 yVa~~~~g~I~~~dp~~g~~~~~i~~-p-------~~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 240 LVANWGSSHIEVFGPDGGQPKMRIRC-P-------FEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEEC-S-------SSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEC-C-------CCCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 99982799999996999979999979-9-------99878999928989999998789919999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=0.00027 Score=43.50 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECC--CEEEEEECC
Q ss_conf 98379999589999999978994999987999367896279999998699999860899899999689--809999866
Q 000681 1042 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--GNIRIWKDY 1118 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~D--G~IrIWdl~ 1118 (1354)
..+..+.|.+++++.++-..++.|..|+.+.++....+.... .....+++ .+++.++++...+ ....++...
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla~--~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEEC
T ss_pred CCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCC---CCEEEEEE--CCCCCEEEEECCCCCCCEEEEEEC
T ss_conf 674707899999999997799999999899995999994899---87038999--999999999568973110499873
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=0.00019 Score=44.66 Aligned_cols=115 Identities=9% Similarity=0.000 Sum_probs=44.6
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 65521889883677889999999995099102378875437999999530789999999888999999999973024437
Q 000681 548 FIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 627 (1354)
Q Consensus 548 f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~ 627 (1354)
.+..+.+.......+.-+..+++.++.........-....+...+...+... ++.+++|..++-+++.+......
T Consensus 132 l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~-----~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 132 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE-----EPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT-----CCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999882032177888899888898763141000233889999999986154-----56799999999999999886132
Q ss_pred HHHHH-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 76731-03680466743204999578899999996401458
Q 000681 628 AQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 667 (1354)
Q Consensus 628 ~~~~~-~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 667 (1354)
..... ........+..++.|+.|+||.++.-+|+.++...
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~ 247 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 45667777776766887725998999999999999999871
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=0.00033 Score=42.79 Aligned_cols=217 Identities=10% Similarity=0.062 Sum_probs=126.5
Q ss_pred CCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 9837999958999999997899---499998799936789627999999869999986089989999968-980999986
Q 000681 1042 KGTKTALLQPFSPIVVAADENE---RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1117 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs~Dg---~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~-DG~IrIWdl 1117 (1354)
..+..-+|||||+.||....+. .+.+.+...+.. ..+..+. .......| ++++..++.... ++...++..
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~--spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCS---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEE---CCCCCCEE--CCCCCEEEEEEECCCCCCEEEC
T ss_conf 8426038878999899998152675134431136750-6776420---24543024--4889864676402786410000
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCC--EEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 6777850488401024589997112503799935999499997-898--1999988888513454249999982799997
Q 000681 1118 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1194 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg--~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~ 1194 (1354)
......... .......... ..++..+..++... .++ .|...+..... ...+... ....... .+
T Consensus 113 ~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~-~~~~~~~-~~ 178 (269)
T d2hqsa1 113 DLASGQIRQ------VTDGRSNNTE----PTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWE-GSQNQDA-DV 178 (269)
T ss_dssp ETTTCCEEE------CCCCSSCEEE----EEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCS-SSEEEEE-EE
T ss_pred CCCCCCCEE------EEECCCCCCC----CCCCCCCCCCEECCCCCCCCEEEEEECCCCC--CEEEECC-CCCCCCC-CC
T ss_conf 222122000------0101442114----5434554433000012687438654213310--0010001-2222343-22
Q ss_pred CCCCCEEEEEECCC-E--EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC---CCEEEEECCCCCC
Q ss_conf 49999999998899-0--9999877997226741678878888599999229999999999779---9299996789972
Q 000681 1195 QVHGGQLAAGFVDG-S--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKD 1268 (1354)
Q Consensus 1195 s~~g~~Lvsgs~DG-s--IrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~D---G~I~IWDi~~~~~ 1268 (1354)
++++..++....++ . +.+.|...+. .... .. ........|+|+ |+.|+-.+.. ..|+++++..+
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-~~---~~~~~~p~~SPD--G~~i~f~s~~~~~~~l~~~~~dg~-- 248 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVL-SS---TFLDETPSLAPN--GTMVIYSSSQGMGSVLNLVSTDGR-- 248 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCC--EEEC-CC---SSSCEEEEECTT--SSEEEEEEEETTEEEEEEEETTSC--
T ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCC--CEEE-EC---CCCCCCEEECCC--CCEEEEEECCCCCCEEEEEECCCC--
T ss_conf 3454305778605880125676035644--0585-06---865445589899--999999981799847999999999--
Q ss_pred CEEEEECCCCCEEEEEECCC
Q ss_conf 17999157998589999279
Q 000681 1269 AYLTIDAHRGSLSALAVHRH 1288 (1354)
Q Consensus 1269 ~i~~l~~h~~~ItsLafspd 1288 (1354)
....+....+.+...+|+|-
T Consensus 249 ~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 249 FKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCC
T ss_conf 77998579985883782898
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.00034 Score=42.76 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 36889850358344556999999987604900121433046713465521889883677889999999995099102378
Q 000681 503 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1354)
Q Consensus 503 fpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~ 582 (1354)
.|-++++|+++.++.+..++-.+..+|..+...+..+.+.|++...++.|.+++ ++.|.-++.+|..+..+++..|..
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--QNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 899999857999999999999999998499999999998885999999877999--899999999999997499888999
Q ss_pred HHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8754379999995307899999998889999999999730244
Q 000681 583 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 625 (1354)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~ 625 (1354)
..+.+.+..++..+.. +.++++|..++-+|..+....
T Consensus 82 i~~~g~v~~li~~l~~------~~~~~~~~~a~~~l~~l~~~~ 118 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRR------TGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHTTCHHHHHHHHTT------CCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9987982899999843------373889999999999998641
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.06 E-value=0.00036 Score=42.57 Aligned_cols=236 Identities=13% Similarity=0.122 Sum_probs=124.6
Q ss_pred CCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC----C
Q ss_conf 986999998608998999996898099998667778504884010245899971125037999359994999978----9
Q 000681 1087 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE----V 1162 (1354)
Q Consensus 1087 ~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~----D 1162 (1354)
..+..+.| .+++++.++-...+.|..|+... +..... .......... +++++++..+++... .
T Consensus 40 ~~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g--~~~~~~-----~~~~~~~p~g----la~~~dG~l~va~~~~~~~~ 106 (319)
T d2dg1a1 40 LQLEGLNF--DRQGQLFLLDVFEGNIFKINPET--KEIKRP-----FVSHKANPAA----IKIHKDGRLFVCYLGDFKST 106 (319)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTCEEEEECTTT--CCEEEE-----EECSSSSEEE----EEECTTSCEEEEECTTSSSC
T ss_pred CCCEECEE--CCCCCEEEEECCCCEEEEEECCC--CEEEEE-----EECCCCCEEE----EEECCCCCEEEEECCCCCCC
T ss_conf 67470789--99999999977999999998999--959999-----9489987038----99999999999956897311
Q ss_pred CEEEEEECCCCCEEEEEECC-CCCCCEEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCCCCCCE
Q ss_conf 81999988888513454249-999982799997499999999988------99099998779972267416788788885
Q 000681 1163 SSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFV------DGSVRLYDVRTPDMLVCSTRPHTQQVERV 1235 (1354)
Q Consensus 1163 g~I~IWDl~t~~~~i~~l~~-~~~~~VtsI~~~s~~g~~Lvsgs~------DGsIrIwDlrs~~~~~~~~~~~~~h~~~I 1235 (1354)
+.+...+..... ....... ........+ .+.++|++.++... .|.+..++..... ........ ...
T Consensus 107 ~~i~~~~~~~~~-~~~~~~~~~~~~~~nd~-~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~----~~p 179 (319)
T d2dg1a1 107 GGIFAATENGDN-LQDIIEDLSTAYCIDDM-VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNI----SVA 179 (319)
T ss_dssp CEEEEECTTSCS-CEEEECSSSSCCCEEEE-EECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEE----SSE
T ss_pred EEEEEECCCCCE-EEEECCCCCCCCCCCCE-EEEECCCEEECCCCCCCCCCCCEEEEEECCCCE-EEEEEECC----CEE
T ss_conf 049987389963-64442677755587522-677306532001354002574215788416633-57886123----301
Q ss_pred EEEEEECCCCCCEE-EEEECCCCEEEEECCCCCCCEEEEE-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 99999229999999-9997799299996789972179991-------579985899992799989999689919999579
Q 000681 1236 VGISFQPGLDPAKI-VSASQAGDIQFLDIRNHKDAYLTID-------AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1307 (1354)
Q Consensus 1236 ~si~fsp~~~g~~L-vsgs~DG~I~IWDi~~~~~~i~~l~-------~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~ 1307 (1354)
..++|+++ ++.| ++-+..+.|..|++........... ........+++..+|++.++....+.|.+|+.+
T Consensus 180 nGia~s~d--g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 180 NGIALSTD--EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEEECTT--SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEECCC--CCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCC
T ss_conf 00010122--2127874046891479997699836202463333125776410364173899999998489989999799
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 934789825578644456787499999449979999988
Q 000681 1308 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1308 g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
|+.+..+.. -.. ...+...+++++|.+.+..+.+...
T Consensus 258 G~~l~~i~~-P~~-~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 258 GYPIGQILI-PGR-DEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp SCEEEEEEC-TTG-GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCEEEEEEC-CCC-CCCCCCEEEEEEEECCCCEEEEECC
T ss_conf 959889968-875-7786750466778079988999857
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00025 Score=43.68 Aligned_cols=109 Identities=13% Similarity=0.196 Sum_probs=60.6
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 46552188988367788999999999509910237887543799999953078999999988899999999997302443
Q 000681 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1354)
Q Consensus 547 ~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~ 626 (1354)
++...+.+.+ ...|.-+++.++.+..+....+..-.-..+...+...+. |++|.||..++.++|++.+...
T Consensus 370 ~i~~~l~~~~--~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T d1qgra_ 370 FIKEHIKNPD--WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------DPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998602513--788899999887666432298898999999999998615-------7860899999988999999813
Q ss_pred HHHHHH-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 776731-036804667432049995788999999964014
Q 000681 627 EAQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 665 (1354)
Q Consensus 627 ~~~~~~-~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 665 (1354)
...... .-......+...+ +..|.||..+..++..++.
T Consensus 441 ~~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 441 EAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_conf 11101777666799999882-6987999999987889999
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.00017 Score=44.85 Aligned_cols=181 Identities=13% Similarity=0.084 Sum_probs=103.3
Q ss_pred HHHHHHHHHCHHHHHH--HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 2367887511034667--99999998417987999988608836889850358344556999999987604900121433
Q 000681 463 LPIVLQVLLSQCHRFR--ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 540 (1354)
Q Consensus 463 lP~vLq~LlS~~~rlr--al~ll~~fld~g~wAv~lal~~gifpyvlklL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~ 540 (1354)
.|.++++|.|....++ |...|++.---.+-.+......|+.|-.+++|.++..+.|..++..+..+...++..|..+.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 89999985799999999999999999849999999999888599999987799989999999999999749988899999
Q ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCC--------CCCCCCCCHHHHH
Q ss_conf 04671346552188988367788999999999509910237887543799999953078--------9999999888999
Q 000681 541 KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGS--------MPNDAQTEPLFLQ 612 (1354)
Q Consensus 541 k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~--------~~~~~~~~P~vR~ 612 (1354)
+.+++..+++.+...+. ++.|..++-+|+.+..+....+. ....++.......+... .......++.++.
T Consensus 84 ~~g~v~~li~~l~~~~~-~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHH-HHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHH
T ss_conf 87982899999843373-88999999999999864135788-88601078899987532211000035530214499999
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999999973024437767310368046674320
Q 000681 613 WLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL 645 (1354)
Q Consensus 613 w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll 645 (1354)
-++.+|..+..+.+..+......++...+..++
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll 194 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV 194 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999987368667899998703279999987
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.0003 Score=43.18 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 89850358344556999999987604900121433046713465521889883677889999999995099102378875
Q 000681 506 VLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIE 585 (1354)
Q Consensus 506 vlklL~s~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~ 585 (1354)
++++|+++.++.|..++.++..+-. +.....+++.|.+++ ++.|..++..|+.+...... .
T Consensus 24 L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~--~~vr~~a~~aL~~l~~~~~~------~ 84 (276)
T d1oyza_ 24 LFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN--YIRRDIGAFILGQIKICKKC------E 84 (276)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS--HHHHHHHHHHHHHSCCCTTT------H
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCC------C
T ss_conf 9988469999999999999986188-----------739999999980999--89999999999872022121------2
Q ss_pred HCHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 4379999995-30789999999888999999999973024437767310368046674320499957889999999640
Q 000681 586 AGLIHVCLKH-LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 663 (1354)
Q Consensus 586 ~~~~~~~~~~-L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 663 (1354)
......+... ++ |++|.+|..++.+|+.++...... ...+...+...+.|..+.||.+++.+++..
T Consensus 85 ~~~~~~l~~~~l~-------d~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~ 151 (276)
T d1oyza_ 85 DNVFNILNNMALN-------DKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVI 151 (276)
T ss_dssp HHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 0229999999866-------997668999999999870246210-----189999999986472048999999987410
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.0011 Score=39.01 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 98889999999999730
Q 000681 606 TEPLFLQWLCLCLGKLW 622 (1354)
Q Consensus 606 ~~P~vR~w~~l~Lg~l~ 622 (1354)
++|.||..+|.+|+.|.
T Consensus 490 ~~~~V~~~a~~al~~l~ 506 (888)
T d1qbkb_ 490 SNKRVQEAACSAFATLE 506 (888)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 98789998999999999
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00077 Score=40.16 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=10.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 743204999578899999996401
Q 000681 641 YVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 641 l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+...+++..+.|+..++.++|.++
T Consensus 711 l~~~L~~~~~~v~~~a~~~ig~ia 734 (888)
T d1qbkb_ 711 LGTNLNPEFISVCNNATWAIGEIS 734 (888)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 998738677899999999999999
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00052 Score=41.39 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 998889999999999730244377673103680466743204999578899999996401
Q 000681 605 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 605 ~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
+..+.+|.+++.+||.+....+. .........+...++|++++||.++.++||.+.
T Consensus 826 ~~~~~~~~~al~~Lge~~~~~~~----~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~ 881 (1207)
T d1u6gc_ 826 RSTDSIRLLALLSLGEVGHHIDL----SGQLELKSVILEAFSSPSEEVKSAASYALGSIS 881 (1207)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCC----CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 22599999999999999985253----115999999999808998899999999999999
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00059 Score=40.97 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=42.0
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 46552188988367788999999999509910237887543799999953078999999988899999999997302443
Q 000681 547 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 626 (1354)
Q Consensus 547 ~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~ 626 (1354)
-++..|++.+ |..|.-++.+|+.+- ...++..+..+|+ |++|++|..++.+|+.+.....
T Consensus 23 ~L~~~L~d~~--~~vR~~A~~~L~~~~-----------~~~~~~~l~~~l~-------d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 23 ELFRLLDDHN--SLKRISSARVLQLRG-----------GQDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHCCCC--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998846999--999999999998618-----------8739999999980-------9998999999999987202212
Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 77673103680466743204999578899999996401
Q 000681 627 EAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 664 (1354)
Q Consensus 627 ~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 664 (1354)
..... ....+..+++|.+|.||.+++.+|+.+.
T Consensus 83 ~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~ 115 (276)
T d1oyza_ 83 CEDNV-----FNILNNMALNDKSACVRATAIESTAQRC 115 (276)
T ss_dssp THHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CCCCH-----HHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 12022-----9999999866997668999999999870
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.0017 Score=37.69 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=13.6
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 964205799221489999999999852
Q 000681 697 LLTVVSDGSPLVRAEVAVALARFAFGH 723 (1354)
Q Consensus 697 ll~~~~D~sp~VR~e~~~~l~~~v~~~ 723 (1354)
++....|.++.||..++.+++.+....
T Consensus 858 l~~~l~~~~~~vr~aAa~aLg~l~~~~ 884 (1207)
T d1u6gc_ 858 ILEAFSSPSEEVKSAASYALGSISVGN 884 (1207)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999808998899999999999999762
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=0.0021 Score=36.97 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=8.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 4320499957889999999640
Q 000681 642 VPLLSEPQPEVRASAVFSLGTL 663 (1354)
Q Consensus 642 ~~ll~D~sP~VRaa~v~aL~~~ 663 (1354)
+..++|..+.||.+++.+++.+
T Consensus 645 ~~~l~~~~~~v~~~a~~~l~~i 666 (861)
T d2bpta1 645 LKALNQVDSPVSITAVGFIADI 666 (861)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9873799889999999999999
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0023 Score=36.65 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=11.3
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 3465521889883677889999999995099
Q 000681 546 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 576 (1354)
Q Consensus 546 ~~f~~~L~~~~~~~~~r~~~af~La~l~~~~ 576 (1354)
..++..+.+++ +..|.-++.+++.+++.+
T Consensus 411 ~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~ 439 (876)
T d1qgra_ 411 PTLIELMKDPS--VVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHTCSS--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCC--CHHHHHHHHHHHHHHHHC
T ss_conf 99998615786--089999998899999981
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.38 E-value=0.00033 Score=42.87 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=61.6
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 37999999530789999999888999999999973024437767310368046674320499957889999999640145
Q 000681 587 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 666 (1354)
Q Consensus 587 ~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 666 (1354)
..+..++..|. |++|.+|..++.+||.+... .+...|..+++|..|.||.+++.+|+.+- .
T Consensus 22 ~~~~~L~~~l~-------d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~-~ 82 (111)
T d1te4a_ 22 EAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-G 82 (111)
T ss_dssp TTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHC-C
T ss_conf 89999999974-------99878999999998761012-----------32799873302303379999999999867-6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 877788998899887719999999999999964205799221489999999
Q 000681 667 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 717 (1354)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~ 717 (1354)
......+..++.|.++.||++++.+|.
T Consensus 83 ------------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ------------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ------------------------CCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf ------------------------114999999882998999999999987
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=0.0038 Score=35.06 Aligned_cols=219 Identities=8% Similarity=-0.053 Sum_probs=93.9
Q ss_pred EEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 999958999999997-8994999987999367896279999998699999860899899999689809999866777850
Q 000681 1046 TALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1124 (1354)
Q Consensus 1046 sL~fspdg~~Latgs-~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~ 1124 (1354)
...|++.+..|.-.+ ..+.|..|+.++++. ..+... ..+.++.+ ..++.++++ +.+ .+.++|..+ ++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~----~~~~~i~~--~~dg~l~va-~~~-gl~~~d~~t--g~~ 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALP----FMGSALAK--ISDSKQLIA-SDD-GLFLRDTAT--GVL 90 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECS----SCEEEEEE--EETTEEEEE-ETT-EEEEEETTT--CCE
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEE-EEEECC----CCCEEEEE--ECCCCEEEE-EEC-CCEEEECCC--CEE
T ss_conf 8759899999999987899999998998959-999899----98179899--659988999-737-638950464--513
Q ss_pred EEEEEEECCCCCC--CCCCCCEEEEEEECCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 4884010245899--971125037999359994999978----9819999888885134542499999827999974999
Q 000681 1125 KLVTAFSSIQGHK--PGVRCSNVVVDWQQQSGYLYASGE----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1198 (1354)
Q Consensus 1125 ~lvs~~~~l~~h~--~~V~si~~~i~~sp~~~~Llsag~----Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g 1198 (1354)
+... ...... ..... +...+++...++... .+.-.+|.+..++ ....... .. ....+ .+++++
T Consensus 91 ~~l~---~~~~~~~~~~~nd----~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~-~~-~~Ng~-~~s~d~ 159 (295)
T d2ghsa1 91 TLHA---ELESDLPGNRSND----GRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFAD-IS-IPNSI-CFSPDG 159 (295)
T ss_dssp EEEE---CSSTTCTTEEEEE----EEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEE-ES-SEEEE-EECTTS
T ss_pred EEEE---EEECCCCCCCCEE----EEECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEEC-CC-CCCEE-EECCCC
T ss_conf 5786---6404787661013----57979999988742643133330576622996-8998650-68-76402-465877
Q ss_pred CEE-EEEECCCEEEEEECCCCCEE----EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEE
Q ss_conf 999-99988990999987799722----6741678878888599999229999999999779929999678997217999
Q 000681 1199 GQL-AAGFVDGSVRLYDVRTPDML----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273 (1354)
Q Consensus 1199 ~~L-vsgs~DGsIrIwDlrs~~~~----~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l 1273 (1354)
+.+ ++.+..+.|..|++...... ...+....+..+....+++..+ |++.++.-..+.|..||.. + +.+..+
T Consensus 160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~--GnlWva~~~~g~V~~~dp~-G-~~~~~i 235 (295)
T d2ghsa1 160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYDTD-G-NHIARY 235 (295)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEECTT-C-CEEEEE
T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCC--CCEEEEEECCCCEEEECCC-C-CEEEEE
T ss_conf 66898515663246764535555324535788416755566632678699--9989532078846885699-9-286686
Q ss_pred ECCCCCEEEEEEC-CCCC
Q ss_conf 1579985899992-7999
Q 000681 1274 DAHRGSLSALAVH-RHAP 1290 (1354)
Q Consensus 1274 ~~h~~~ItsLafs-pdg~ 1290 (1354)
......+++++|- ++.+
T Consensus 236 ~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 236 EVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp ECSCSBEEEEEEESTTSC
T ss_pred CCCCCCEEEEEEECCCCC
T ss_conf 389985279898289999
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.23 E-value=0.00034 Score=42.77 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=55.8
Q ss_pred CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67134655218898836778899999999950991023788754379999995307899999998889999999999730
Q 000681 543 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 622 (1354)
Q Consensus 543 ~~~~~f~~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~ 622 (1354)
.....++..|.+.+ +..|..++.+|+.+. ..+....+...|+ |++|.||..++-+||++.
T Consensus 22 ~~~~~L~~~l~d~~--~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~VR~~a~~aL~~i~ 81 (111)
T d1te4a_ 22 EAFEPLLESLSNED--WRIRGAAAWIIGNFQ-----------DERAVEPLIKLLE-------DDSGFVRSGAARSLEQIG 81 (111)
T ss_dssp TTHHHHHHGGGCSC--HHHHHHHHHHHGGGC-----------SHHHHHHHHHHHH-------HCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCC--HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHC
T ss_conf 89999999974998--789999999987610-----------1232799873302-------303379999999999867
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 2443776731036804667432049995788999999964
Q 000681 623 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 662 (1354)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~ 662 (1354)
.. .+...|..+++|++|.||.+++.+|.+
T Consensus 82 ~~-----------~~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 82 GE-----------RVRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp SH-----------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CC-----------CHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 61-----------149999998829989999999999876
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0073 Score=33.04 Aligned_cols=280 Identities=10% Similarity=0.022 Sum_probs=131.0
Q ss_pred CCEEEEECCCC------------CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCE---------
Q ss_conf 93999858999------------983799995899999999789949999879993678962799999986---------
Q 000681 1031 NPIACWDTRFE------------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGI--------- 1089 (1354)
Q Consensus 1031 ~~I~iWd~~~~------------~~I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~I--------- 1089 (1354)
+.+.++|..++ ..+....|+|+|+.+|... ++.+.+.+..++..++....... +.|
T Consensus 91 ~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~--~~i~nG~~d~vy 167 (465)
T d1xfda1 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE--GVIYNGLSDWLY 167 (465)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT--TTEEEEECCHHH
T ss_pred CCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCC--CEEECCCCCHHH
T ss_conf 528999856884564157667764311002426785699996-13299995489965897112676--604436643100
Q ss_pred --------EEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf --------999998608998999996-89809999866777850488401024589997112503799935999499997
Q 000681 1090 --------SKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1160 (1354)
Q Consensus 1090 --------tsL~f~~s~d~~~Lvtgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag 1160 (1354)
.++-| +||+..|+... ++..|..+.+....+. ....+.. +.+-..+.. .
T Consensus 168 eee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~------------~~p~~~~----~~Yp~~G~~----n 225 (465)
T d1xfda1 168 EEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGS------------IYPTVKP----YHYPKAGSE----N 225 (465)
T ss_dssp HHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSS------------SSCCCEE----EECCBTTSC----C
T ss_pred HHHHCCCCCEEEE--CCCCCEEEEEEECCCCCCEEECCCCCCC------------CCCEEEE----EECCCCCCC----C
T ss_conf 1230366434897--7989868999953666614641234454------------4431334----530256888----9
Q ss_pred CCCEEEEEECCCCCEEEEEECC----CCCCCEEEEEEECCCCCEEEEEEC-C---CEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 8981999988888513454249----999982799997499999999988-9---9099998779972267416788788
Q 000681 1161 EVSSIMLWDLEKEQQMVNPIPS----SSDCSISALTASQVHGGQLAAGFV-D---GSVRLYDVRTPDMLVCSTRPHTQQV 1232 (1354)
Q Consensus 1161 ~Dg~I~IWDl~t~~~~i~~l~~----~~~~~VtsI~~~s~~g~~Lvsgs~-D---GsIrIwDlrs~~~~~~~~~~~~~h~ 1232 (1354)
....+.++|+..+......... ..+..+..+ .+.++++.++.... + ..+.++|..+++.. ...... ..
T Consensus 226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~-~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~-~~~~e~--~~ 301 (465)
T d1xfda1 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV-KWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDE--SE 301 (465)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE-EESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEE--CS
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEE-EECCCCEEEEEEECCCCCCCEEEEECCCCCCEE-EEEEEC--CC
T ss_conf 72137998368981789995257676666304566-875799389999741003013799707999278-778972--78
Q ss_pred CCE----EEEEEECCCCCCEE--EEEE-CCC--CEEEEECCC-----CCCCEEEEECCCCCEEEE-EECCCCCEE-EEEE
Q ss_conf 885----99999229999999--9997-799--299996789-----972179991579985899-992799989-9996
Q 000681 1233 ERV----VGISFQPGLDPAKI--VSAS-QAG--DIQFLDIRN-----HKDAYLTIDAHRGSLSAL-AVHRHAPII-ASGS 1296 (1354)
Q Consensus 1233 ~~I----~si~fsp~~~g~~L--vsgs-~DG--~I~IWDi~~-----~~~~i~~l~~h~~~ItsL-afspdg~~L-asgs 1296 (1354)
.+| ....|.++ |..+ +..+ .+| .+...++.. ....+..+....-.|..+ .|.+++..+ .++.
T Consensus 302 ~wv~~~~~~p~~~~d--g~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 302 AWLHRQNEEPVFSKD--GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (465)
T ss_dssp SCCCCCCCCCEECTT--SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred CEEECCCCCEEECCC--CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEE
T ss_conf 517356786057468--980577776543166716899831566667886269822699219977898389999999996
Q ss_pred CCC--CEEEEE--CCCCEE-EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 899--199995--799347-89825578644456787499999449979999988
Q 000681 1297 AKQ--LIKVFS--LEGEQL-GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1297 ~Dg--~I~Iwd--~~g~~l-~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
.++ .-.+|. ++|... ..+.. .. ........+.|+|++.+++....
T Consensus 380 ~~~p~~~hly~v~l~g~~~~~~lt~-~~----~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 380 EDLPRRRQLYSANTVGNFNRQCLSC-DL----VENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSST-TS----SSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCCCCEEEEEEECCCCCCCEEECC-CC----CCCCCEEEEEECCCCCEEEEEEE
T ss_conf 8999826899997789986055314-46----78898799999999999999800
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.018 Score=30.18 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 77889999999995099102378875437999999530789999999888999999999973024
Q 000681 560 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 624 (1354)
Q Consensus 560 ~~r~~~af~La~l~~~~~~gq~~~~~~~~~~~~~~~L~~~~~~~~~~~P~vR~w~~l~Lg~l~~~ 624 (1354)
..|.-+++.++.+..........-.-..++..+...+. |++|.||..++.++|++...
T Consensus 384 ~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-------DQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 88888998999988410266688878999999988733-------76205666898899999998
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.22 E-value=0.026 Score=29.03 Aligned_cols=236 Identities=8% Similarity=0.036 Sum_probs=120.2
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CC-----EEEEEECCC
Q ss_conf 99589--99999997899499998799936789627999999869999986089989999968-98-----099998667
Q 000681 1048 LLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG-----NIRIWKDYD 1119 (1354)
Q Consensus 1048 ~fspd--g~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~-DG-----~IrIWdl~~ 1119 (1354)
..+|+ |+.++..+ ++.|.+.+..+++.. .+..+. +.+....| ++||+.|+.... ++ .|.+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~---~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNL---GVINNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSS---SEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCC---CCCCCEEE--CCCCCEEEEEEEECCCCCCEEEEEEEECC
T ss_conf 258887999999990-996899989999879-976699---85267798--78999899998628987722899998259
Q ss_pred CCCCCEEEEEEECCCCCCCC---CCCCEEEEEEECCCCEEEEEECC------CEEEEEECCCCCEEEEEECCCCCCCEEE
Q ss_conf 77850488401024589997---11250379993599949999789------8199998888851345424999998279
Q 000681 1120 QKDKQKLVTAFSSIQGHKPG---VRCSNVVVDWQQQSGYLYASGEV------SSIMLWDLEKEQQMVNPIPSSSDCSISA 1190 (1354)
Q Consensus 1120 ~~~~~~lvs~~~~l~~h~~~---V~si~~~i~~sp~~~~Llsag~D------g~I~IWDl~t~~~~i~~l~~~~~~~Vts 1190 (1354)
+....+ ...... .........|++++..++..... ..+...+..... . ..... .. ...
T Consensus 78 --g~~~~l------t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~-~~~ 144 (281)
T d1k32a2 78 --GEIKRI------TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-F-VPLNL--GP-ATH 144 (281)
T ss_dssp --TEEEEC------CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-E-EECCS--CS-CSE
T ss_pred --CCEEEE------EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCE-E-EEECC--CC-CCE
T ss_conf --952886------41688754764443431027988779999713787652024651587760-6-88017--86-523
Q ss_pred EEEECCCCCEEEEEECCC-----------EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC--CC
Q ss_conf 999749999999998899-----------09999877997226741678878888599999229999999999779--92
Q 000681 1191 LTASQVHGGQLAAGFVDG-----------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA--GD 1257 (1354)
Q Consensus 1191 I~~~s~~g~~Lvsgs~DG-----------sIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~D--G~ 1257 (1354)
. +...++..+.....+. ........... ..... . .........+.++ ..+.....+ ..
T Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~~~~ 215 (281)
T d1k32a2 145 I-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIV-D---MSTHVSSPVIVGH---RIYFITDIDGFGQ 215 (281)
T ss_dssp E-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEE-C---CSSCCEEEEEETT---EEEEEECTTSSCE
T ss_pred E-EECCCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCC-EEECC-C---CCCCCCEEEEECC---CCCEECCCCCCCC
T ss_conf 4-64699849886204664044420588620444113661-22404-7---7666421331035---3200011345521
Q ss_pred EEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf 99996789972179991579985899992799989999689919999579934789825
Q 000681 1258 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1316 (1354)
Q Consensus 1258 I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i~~ 1316 (1354)
|.++|+.+. .. ..+..+. ......|+|+|+.|+.. .++.|+++++++.....+..
T Consensus 216 l~~~d~~g~-~~-~~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 216 IYSTDLDGK-DL-RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp EEEEETTSC-SC-EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred EEEEECCCC-CE-EEEECCC-CCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEECC
T ss_conf 289968999-65-9810589-86443286798999998-59999999899998788425
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.10 E-value=0.012 Score=31.37 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=4.5
Q ss_pred CCCCHHHHHHH
Q ss_conf 89993533100
Q 000681 846 KDPSPRIATLG 856 (1354)
Q Consensus 846 ~dp~~~v~~~a 856 (1354)
.|+.++|...+
T Consensus 219 ~D~d~~VR~aA 229 (233)
T d1lrva_ 219 DEPDPEVRLAI 229 (233)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 79999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.23 E-value=0.06 Score=26.35 Aligned_cols=221 Identities=8% Similarity=0.060 Sum_probs=128.1
Q ss_pred EEEEEEEC-CCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 99998608-99899999689809999866777850488401024589997112503799935999499997898199998
Q 000681 1091 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1169 (1354)
Q Consensus 1091 sL~f~~s~-d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~Dg~I~IWD 1169 (1354)
+..| .. ++.+..+--..+.|..|+..+ +..... .....+.+ +.+..+ +.+++++.+ .+..+|
T Consensus 22 gp~w--d~~~~~l~wvDi~~~~I~r~d~~~--g~~~~~-------~~~~~~~~----i~~~~d-g~l~va~~~-gl~~~d 84 (295)
T d2ghsa1 22 GPTF--DPASGTAWWFNILERELHELHLAS--GRKTVH-------ALPFMGSA----LAKISD-SKQLIASDD-GLFLRD 84 (295)
T ss_dssp EEEE--ETTTTEEEEEEGGGTEEEEEETTT--TEEEEE-------ECSSCEEE----EEEEET-TEEEEEETT-EEEEEE
T ss_pred CCEE--ECCCCEEEEEECCCCEEEEEECCC--CEEEEE-------ECCCCCEE----EEEECC-CCEEEEEEC-CCEEEE
T ss_conf 8759--899999999987899999998998--959999-------89998179----899659-988999737-638950
Q ss_pred CCCCCEEEEEECCC---CCCCEEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 88885134542499---99982799997499999999988----990999987799722674167887888859999922
Q 000681 1170 LEKEQQMVNPIPSS---SDCSISALTASQVHGGQLAAGFV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1242 (1354)
Q Consensus 1170 l~t~~~~i~~l~~~---~~~~VtsI~~~s~~g~~Lvsgs~----DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp 1242 (1354)
..+++ ........ ....++.+ ...++|++.++... .+.-.+|.+..++ ........ .....+.|++
T Consensus 85 ~~tg~-~~~l~~~~~~~~~~~~nd~-~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~----~~~Ng~~~s~ 157 (295)
T d2ghsa1 85 TATGV-LTLHAELESDLPGNRSNDG-RMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADI----SIPNSICFSP 157 (295)
T ss_dssp TTTCC-EEEEECSSTTCTTEEEEEE-EECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEE----SSEEEEEECT
T ss_pred CCCCE-EEEEEEEECCCCCCCCEEE-EECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEECC----CCCCEEEECC
T ss_conf 46451-3578664047876610135-7979999988742643133330576622996-89986506----8764024658
Q ss_pred CCCCCE-EEEEECCCCEEEEECCCCC-----CCE--EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEE
Q ss_conf 999999-9999779929999678997-----217--99915799858999927999899996899199995799347898
Q 000681 1243 GLDPAK-IVSASQAGDIQFLDIRNHK-----DAY--LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTI 1314 (1354)
Q Consensus 1243 ~~~g~~-Lvsgs~DG~I~IWDi~~~~-----~~i--~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~Iwd~~g~~l~~i 1314 (1354)
+ ++. +++.+..+.|..+++.... ... .......+....+++..+|.+.++.-..+.|..|+.+|+.+..+
T Consensus 158 d--~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i 235 (295)
T d2ghsa1 158 D--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY 235 (295)
T ss_dssp T--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred C--CCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCEEEEE
T ss_conf 7--76689851566324676453555532453578841675556663267869999895320788468856999286686
Q ss_pred ECCCCCCCCCCCCCEEEEEEE-CCCCEEEEEE
Q ss_conf 255786444567874999994-4997999998
Q 000681 1315 RYHHPSFMAQKIGSVNCLTFH-PYQVLLAAGS 1345 (1354)
Q Consensus 1315 ~~~h~~fl~~~~~~V~sLafs-pdg~~Lasgs 1345 (1354)
.. -. ..+++++|- ++...|.+.+
T Consensus 236 ~l-P~-------~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 236 EV-PG-------KQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EC-SC-------SBEEEEEEESTTSCEEEEEE
T ss_pred CC-CC-------CCEEEEEEECCCCCEEEEEE
T ss_conf 38-99-------85279898289999999997
|
| >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Caspase-like superfamily: Caspase-like family: Caspase catalytic domain domain: Caspase-9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.082 Score=25.35 Aligned_cols=154 Identities=9% Similarity=-0.009 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH-HCCC-CCCEEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 1469999999999999985333452001599988999999985-0369-9950999983789898888860898518987
Q 000681 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTC-RRYA-KGERVLFHYNGHGVPKPTANGEIWLFNKSYT 219 (1354)
Q Consensus 142 ~~~~~~~i~~~l~~~y~~~~~~~~~~~~~~p~~~~~~~~~~~~-r~~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~~~~ 219 (1354)
+.+=.+.|.+.|+ .+ .-.+....|.+.+++++....+ ++.. ..+.++|.|-|||+.....+....++....
T Consensus 44 a~~Da~~l~~~l~----~l--GF~V~~~~nlt~~~~~~~l~~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~- 116 (277)
T d1nw9b_ 44 SNIDCEKLRRRFS----SL--HFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDG- 116 (277)
T ss_dssp HHHHHHHHHHHHH----HT--TEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTS-
T ss_pred CHHHHHHHHHHHH----HC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-
T ss_conf 1999999999998----88--9989995189999999999986663146888799999478764456454576137766-
Q ss_pred EEEEC-------CHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCC---------------------------CCCCCC
Q ss_conf 03203-------44766532299969999299431689999850036---------------------------888999
Q 000681 220 QYIPL-------PISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW---------------------------GASNYS 265 (1354)
Q Consensus 220 ~y~p~-------~~~~l~~~~~~p~~~v~dc~~ag~~~~~~~~~~~~---------------------------~~~~~~ 265 (1354)
+.+++ ....+..-.+.|.+||+||...|.+-......... ......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (277)
T d1nw9b_ 117 CPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSL 196 (277)
T ss_dssp CEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
T ss_conf 50027889987677663541457379998624687656663113567543444444344432100012344333441015
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHH
Q ss_conf 99765079985288788999999990343311403699
Q 000681 266 GSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPIT 303 (1354)
Q Consensus 266 ~~~~~~~~~~ac~~~e~lp~~~~lP~D~ftscl~tP~~ 303 (1354)
+...|.+...||..+...-.+++ .-=.||..|..-++
T Consensus 197 p~~~d~~i~~st~~g~~a~~~~~-~gS~f~~~L~~~l~ 233 (277)
T d1nw9b_ 197 PTPSDIFVSYSTFPGFVSWRDPK-SGSWYVETLDDIFE 233 (277)
T ss_dssp CCSCSEEEEEECCCCBSSTTCTT-SCBHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHHHH
T ss_conf 77665069971565348744898-89899999999999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.95 E-value=0.12 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.293 Sum_probs=13.0
Q ss_pred EEECCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 9922999999999977992999967899
Q 000681 1239 SFQPGLDPAKIVSASQAGDIQFLDIRNH 1266 (1354)
Q Consensus 1239 ~fsp~~~g~~Lvsgs~DG~I~IWDi~~~ 1266 (1354)
.|+|+ |+.|+.. .++.|+++|+.++
T Consensus 239 ~~SpD--G~~I~f~-~~~~l~~~d~~~g 263 (281)
T d1k32a2 239 HLNTD--GRRILFS-KGGSIYIFNPDTE 263 (281)
T ss_dssp EEEES--SSCEEEE-ETTEEEEECTTTC
T ss_pred CCCCC--CCEEEEE-ECCEEEEEECCCC
T ss_conf 28679--8999998-5999999989999
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.052 Score=26.80 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=106.7
Q ss_pred HHHHHHHCC-CCCC-----CCCCCCHHHHHHHHHCHHHH--HHHHH-HHHHHHCCCH-----HHHHHHHHCCCHHHHHHH
Q ss_conf 547987227-9888-----89996323678875110346--67999-9999841798-----799998860883688985
Q 000681 444 TAFEVWLDH-GSEH-----KKPPEQLPIVLQVLLSQCHR--FRALV-LLGRFLDMGP-----WAVDLALSVGIFPYVLKL 509 (1354)
Q Consensus 444 tafe~~L~~-g~~~-----~~~p~~lP~vLq~LlS~~~r--lral~-ll~~fld~g~-----wAv~lal~~gifpyvlkl 509 (1354)
++|-.||-. .+.. ..-.+..|-+++++....-+ .|-.+ +|-++++... -+....+..++.+. ++.
T Consensus 245 ~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~ 323 (477)
T d1ho8a_ 245 SLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQS 323 (477)
T ss_dssp HHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHH
T ss_conf 9999999975897899987732678999999988631778999999999998621222335678999997151689-999
Q ss_pred HCC---CCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 035---8344556999999987604900121433046713465----521889883677889999999995099102378
Q 000681 510 LQT---TTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFI----RFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 582 (1354)
Q Consensus 510 L~s---~~~elr~~~~FI~a~i~~~~~~~q~~l~k~~~~~~f~----~~L~~~~~~~~~r~~~af~La~l~~~~~~gq~~ 582 (1354)
|+. .-+|+...+.|+...+-...+. +- .--.|.- .+|. . .|.||- ..||+.+-. +.-
T Consensus 324 L~~r~~~Dedl~edl~~L~~~L~~~~k~----lT--sfd~Y~~Ev~Sg~L~-W--SP~H~s------e~FW~EN~~-kf~ 387 (477)
T d1ho8a_ 324 LSERKYSDEELRQDISNLKEILENEYQE----LT--SFDEYVAELDSKLLC-W--SPPHVD------NGFWSDNID-EFK 387 (477)
T ss_dssp HHSSCCSSHHHHHHHHHHHHHHHHHHHT----CC--HHHHHHHHHHHTCCC-C--CGGGGC------HHHHHHHSG-GGS
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHH----CC--CHHHHHHHHHCCCCC-C--CCCCCC------HHHHHHHHH-HHC
T ss_conf 7439999778999999999999998885----07--599999999549877-7--787677------258999998-624
Q ss_pred HHHHCHHHHHHHHHCCCC---CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 875437999999530789---99999988899999999997302443776731036804667432049995788999999
Q 000681 583 CIEAGLIHVCLKHLQGSM---PNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFS 659 (1354)
Q Consensus 583 ~~~~~~~~~~~~~L~~~~---~~~~~~~P~vR~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~a 659 (1354)
--+-.++.+++.+|.... ..+...+|.+-+=||+=+|.|+..++++|.+.-+.++-+.+..+++++.|+||.+|+.|
T Consensus 388 e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~a 467 (477)
T d1ho8a_ 388 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 467 (477)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 13548999999998620445555457882333133500779999785336799882839999988649997999999999
Q ss_pred HHHCC
Q ss_conf 96401
Q 000681 660 LGTLL 664 (1354)
Q Consensus 660 L~~~i 664 (1354)
++.++
T Consensus 468 vQklm 472 (477)
T d1ho8a_ 468 TQAII 472 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.69 E-value=0.18 Score=22.91 Aligned_cols=279 Identities=9% Similarity=0.077 Sum_probs=122.0
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEEE--EEE-CCCCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 837999958999999997899-----------49999879993678--962-7999999869999986089989999968
Q 000681 1043 GTKTALLQPFSPIVVAADENE-----------RIKIWNYEEDTLLN--SFD-NHDFPDKGISKLCLVNELDVSLLLVASC 1108 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs~Dg-----------~I~IWd~~tg~~l~--~l~-~h~~~~~~ItsL~f~~s~d~~~Lvtgs~ 1108 (1354)
++.......++++++.|+.+. .+.+||..+++-.. ... .+. .......+ ..++.+++.|+.
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~---~~~~~~~~--~~~g~i~v~Gg~ 95 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD---MFCPGISM--DGNGQIVVTGGN 95 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC---CSSCEEEE--CTTSCEEEECSS
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCC---CCEEEEEE--ECCCCEEEEECC
T ss_conf 0178999259999999840576667887760689999888896866677898744---52568999--468868986368
Q ss_pred C-CEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECC------CEEEEEECCCCCEEEEEEC
Q ss_conf 9-80999986677785048840102458999711250379993599949999789------8199998888851345424
Q 000681 1109 N-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------SSIMLWDLEKEQQMVNPIP 1181 (1354)
Q Consensus 1109 D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~D------g~I~IWDl~t~~~~i~~l~ 1181 (1354)
+ ..+.+||..+ +..... ..+...... .+ .+...++..++.+|.+ ..+.+||..+.+ -..+.
T Consensus 96 ~~~~~~~yd~~~--~~w~~~---~~~~~~r~~-~~----~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 163 (387)
T d1k3ia3 96 DAKKTSLYDSSS--DSWIPG---PDMQVARGY-QS----SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLP 163 (387)
T ss_dssp STTCEEEEEGGG--TEEEEC---CCCSSCCSS-CE----EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEET
T ss_pred CCCCEEEECCCC--CCCCCC---CCCCCCCCC-CC----EEEECCCCEEEECCCCCCCCCCCEEEEECCCCCC--EEECC
T ss_conf 886216756755--744215---656642101-30----3553178266521366333543205663488895--51158
Q ss_pred CC---------------CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCCC--CCCEEEEEEEC
Q ss_conf 99---------------9998279999749999999998899099998779972267416--78878--88859999922
Q 000681 1182 SS---------------SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQ--VERVVGISFQP 1242 (1354)
Q Consensus 1182 ~~---------------~~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~--~~~~h--~~~I~si~fsp 1242 (1354)
.. ... -..+ +...+++.++.+..++.+.++|..+......... ....+ ...-.++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (387)
T d1k3ia3 164 NAKVNPMLTADKQGLYRSDN-HAWL-FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA 241 (387)
T ss_dssp TSCSGGGCCCCTTGGGTTTC-SCCE-EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEET
T ss_pred CCCCCCCCCCCCCCEEECCC-EEEE-EEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 87644311346651365042-2699-970798778746867747814866671731665566766576322263788613
Q ss_pred CCCCCEEEEEECCC--------CEEEEECCCCCCCEEEEEC-----CCCCEEEEEECCCCCEEEEEECC-----------
Q ss_conf 99999999997799--------2999967899721799915-----79985899992799989999689-----------
Q 000681 1243 GLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA-----HRGSLSALAVHRHAPIIASGSAK----------- 1298 (1354)
Q Consensus 1243 ~~~g~~Lvsgs~DG--------~I~IWDi~~~~~~i~~l~~-----h~~~ItsLafspdg~~Lasgs~D----------- 1298 (1354)
. ++++++.|+... ...+.+............. ....-.+....+++++++.|+.+
T Consensus 242 ~-~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 242 V-KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp T-TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred C-CCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 5-882478875367887752100000111113567884060366566543433566058749998884567668899470
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 919999579934789825578644456787499999449979999988
Q 000681 1299 QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1346 (1354)
Q Consensus 1299 g~I~Iwd~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~ 1346 (1354)
..+.+||.....-..+.. ... .+.. -......+||++++.|+.
T Consensus 321 ~~ve~Ydp~~~~W~~~~~-~~~---~R~~-Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNP-NSI---VRVY-HSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCEEEEGGGTEEEECCC-CSS---CCCT-TEEEEECTTSCEEEEECC
T ss_pred CEEEEEECCCCEEEECCC-CCC---CCCC-EEEEEECCCCEEEEEECC
T ss_conf 107989799991887889-997---5531-279999889999999698
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.63 E-value=0.064 Score=26.17 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=11.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 674320499957889999999
Q 000681 640 IYVPLLSEPQPEVRASAVFSL 660 (1354)
Q Consensus 640 ~l~~ll~D~sP~VRaa~v~aL 660 (1354)
.|..+++|+.|+||.+++-.|
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L 186 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRL 186 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHC
T ss_conf 999870599889999999845
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.18 Score=22.85 Aligned_cols=234 Identities=8% Similarity=0.053 Sum_probs=123.7
Q ss_pred CEEEEEECCCCEEEEECCCCCE-----EEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEEECCCCCCCCEEE
Q ss_conf 9999997899499998799936-----7896279999998699999860899899999-689809999866777850488
Q 000681 1054 PIVVAADENERIKIWNYEEDTL-----LNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQKLV 1127 (1354)
Q Consensus 1054 ~~Latgs~Dg~I~IWd~~tg~~-----l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtg-s~DG~IrIWdl~~~~~~~~lv 1127 (1354)
.+|+.+. .+.|+-.+++.... ...+..+. ..+.++.| ....+.++.. ..++.|+..++.. +..+.+
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~---~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g--~~~~~v 73 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPA---KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHG--GEPTTI 73 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEE---EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSS--CCCEEE
T ss_pred CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCC---CCEEEEEE--EECCCEEEEEECCCCEEEEEECCC--CCCEEE
T ss_conf 8999948-982999978886655445310012687---75799999--858999999989999199997665--872898
Q ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 401024589997112503799935999499997-8981999988888513454249999982799997499999999988
Q 000681 1128 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1206 (1354)
Q Consensus 1128 s~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs~ 1206 (1354)
+........+ ++++..++.++.+. ..+.|.+.++.... +...+..... ....++..+..+.++.+-..
T Consensus 74 -----~~~~~~~p~~----iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~-~p~~l~vdp~~g~ly~t~~~ 142 (263)
T d1npea_ 74 -----IRQDLGSPEG----IALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLV-NPRGIVTDPVRGNLYWTDWN 142 (263)
T ss_dssp -----ECTTCCCEEE----EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCS-SEEEEEEETTTTEEEEEECC
T ss_pred -----EEECCCCCCE----EEEECCCCEEEEECCCCCEEEEEECCCCE-EEEEECCCCC-CCCEEEEECCCCCEEEEECC
T ss_conf -----8701264207----99963688688842678979988058816-7777125666-87279992566927995348
Q ss_pred CC--EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEE-ECCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 99--09999877997226741678878888599999229999999999-7799299996789972179991579985899
Q 000681 1207 DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1283 (1354)
Q Consensus 1207 DG--sIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsg-s~DG~I~IWDi~~~~~~i~~l~~h~~~ItsL 1283 (1354)
.+ .|.-.++.... ....... .-.....+++.+. +..|... ...+.|...++... .....+.+. ....++
T Consensus 143 ~~~~~I~r~~~dG~~-~~~i~~~---~~~~P~glaiD~~--~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~-~~P~~l 214 (263)
T d1npea_ 143 RDNPKIETSHMDGTN-RRILAQD---NLGLPNGLTFDAF--SSQLCWVDAGTHRAECLNPAQP-GRRKVLEGL-QYPFAV 214 (263)
T ss_dssp SSSCEEEEEETTSCC-CEEEECT---TCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTEE-EEEEEEECC-CSEEEE
T ss_pred CCCCEEEEECCCCCC-CEEEEEE---CCCCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCC-CEEEEECCC-CCCEEE
T ss_conf 997689996678997-2365530---3555530799504--7589999289999999999999-769998899-986899
Q ss_pred EECCCCCEEEEEECCCCEEEEEC-CCCEEEEEE
Q ss_conf 99279998999968991999957-993478982
Q 000681 1284 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIR 1315 (1354)
Q Consensus 1284 afspdg~~Lasgs~Dg~I~Iwd~-~g~~l~~i~ 1315 (1354)
++. ++.++.+-...+.|...+. .++.+..+.
T Consensus 215 av~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 215 TSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEE-CCEEEEEECCCCEEEEEECCCCCCCEEEC
T ss_conf 999-99999999999979999898995106989
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.48 E-value=0.19 Score=22.72 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=42.5
Q ss_pred HHHHHHHHC----------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 466743204----------9995788999999964014587778899889988771999999999999996420579922
Q 000681 638 PAIYVPLLS----------EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPL 707 (1354)
Q Consensus 638 ~~~l~~ll~----------D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~ 707 (1354)
..+|..+|. ...|.|=|-|++=+|.|+..++ .....-.....=..++.+.++..|.
T Consensus 394 lk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P--------------~gr~il~~lg~K~~vM~Lm~h~d~~ 459 (477)
T d1ho8a_ 394 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP--------------ESIDVLDKTGGKADIMELLNHSDSR 459 (477)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT--------------THHHHHHHHSHHHHHHHHTSCSSHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCC--------------CHHHHHHHCCCHHHHHHHHCCCCHH
T ss_conf 99999998620445555457882333133500779999785--------------3367998828399999886499979
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 148999999999985
Q 000681 708 VRAEVAVALARFAFG 722 (1354)
Q Consensus 708 VR~e~~~~l~~~v~~ 722 (1354)
||+|++.++++++.+
T Consensus 460 Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 460 VKYEALKATQAIIGY 474 (477)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999985
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.69 E-value=0.23 Score=22.09 Aligned_cols=247 Identities=14% Similarity=0.245 Sum_probs=147.4
Q ss_pred CEEEEECCCCCC-------EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE
Q ss_conf 399985899998-------3799995899999999789949999879993678962799999986999998608998999
Q 000681 1032 PIACWDTRFEKG-------TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1104 (1354)
Q Consensus 1032 ~I~iWd~~~~~~-------I~sL~fspdg~~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lv 1104 (1354)
++.+-|..++.. --+.-.||..+.+|.-+ ..++.|+|+++.+.++.+.-.. .|.--.|+ +.+.|+
T Consensus 46 ~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----~VvfWkWi---s~~~L~ 117 (327)
T d1utca2 46 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWI---SLNTVA 117 (327)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEES---SSSEEE
T ss_pred EEEEEECCCCCCCEECCCCHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCC----CCEEEEEC---CCCEEE
T ss_conf 399998899876331443616653088875799962-8868998446822111587688----85799944---798899
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE---C----CCEEEEEECCCCCEEE
Q ss_conf 99689809999866777850488401024589997112503799935999499997---8----9819999888885134
Q 000681 1105 VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---E----VSSIMLWDLEKEQQMV 1177 (1354)
Q Consensus 1105 tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag---~----Dg~I~IWDl~t~~~~i 1177 (1354)
-.+ +..|.-|++.......++ +..|..-..+-......+++...++..| . .|.+.+|..++.. -
T Consensus 118 lVT-~taVYHW~~~g~s~P~k~------fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--s 188 (327)
T d1utca2 118 LVT-DNAVYHWSMEGESQPVKM------FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--S 188 (327)
T ss_dssp EEC-SSEEEEEESSSSCCCEEE------EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--E
T ss_pred EEC-CCCEEEECCCCCCCCHHH------HHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC--C
T ss_conf 991-881699735699985266------2321012486389989899998899995713788305888899802286--7
Q ss_pred EEECCCCCCCEEEEEEECCCC-----CEEEEE---ECCCEEEEEECCCCC--------EEEEEECCCCCCCCCEEEEEEE
Q ss_conf 542499999827999974999-----999999---889909999877997--------2267416788788885999992
Q 000681 1178 NPIPSSSDCSISALTASQVHG-----GQLAAG---FVDGSVRLYDVRTPD--------MLVCSTRPHTQQVERVVGISFQ 1241 (1354)
Q Consensus 1178 ~~l~~~~~~~VtsI~~~s~~g-----~~Lvsg---s~DGsIrIwDlrs~~--------~~~~~~~~~~~h~~~I~si~fs 1241 (1354)
+.+.+|... ...+ ..+| ..|+.+ ...+.+++.++.... +.+..+-......+-..++..+
T Consensus 189 Q~ieGhaa~-F~~~---~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs 264 (327)
T d1utca2 189 QPIEGHAAS-FAQF---KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 264 (327)
T ss_dssp EEECCSEEE-EEEE---CCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred CCCCCEEEE-EEEE---ECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf 523203465-6888---707998873099999878987479999868875578887532688777963468847799964
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 2999999999977992999967899721799915799858999927999899996899199
Q 000681 1242 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1302 (1354)
Q Consensus 1242 p~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~ItsLafspdg~~Lasgs~Dg~I~ 1302 (1354)
+. ...+..-+.-|.|++||+.++ .++..-+-....|...+-+.+..-+++...+|.|.
T Consensus 265 ~k--ygiiyviTK~G~i~lyDleTg-t~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 265 EK--HDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TT--TTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CC--CCEEEEEECCCEEEEEECCCC-CEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 33--799999966758999975666-28999404788448962678886089987897699
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.26 E-value=0.25 Score=21.78 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=14.2
Q ss_pred CCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 99899996899199995-79934789825
Q 000681 1289 APIIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1289 g~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
+.++.+|+.|+.++.+| .+|+.+-++..
T Consensus 475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 99799977899699999999868789989
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.03 E-value=0.27 Score=21.63 Aligned_cols=218 Identities=9% Similarity=-0.023 Sum_probs=120.9
Q ss_pred CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEEECCCC
Q ss_conf 837999958999999997-8994999987999367896279999998699999860899899999-68980999986677
Q 000681 1043 GTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYDQ 1120 (1354)
Q Consensus 1043 ~I~sL~fspdg~~Latgs-~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtg-s~DG~IrIWdl~~~ 1120 (1354)
.+..++|....+.+..++ .++.|+..+.+.+.....+.... ..+.++++ +.-++.|+.+ ...+.|.+.++..
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~---~~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg- 110 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDG- 110 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTS-
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECC---CCCCEEEE--ECCCCEEEEECCCCCEEEEEECCC-
T ss_conf 579999985899999998999919999766587289887012---64207999--636886888426789799880588-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECC---CEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 785048840102458999711250379993599949999789---81999988888513454249999982799997499
Q 000681 1121 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1197 (1354)
Q Consensus 1121 ~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag~D---g~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~ 1197 (1354)
...+.+ .......... ++.+|..+.++..... +.|..-++.... ........-. ..++++....+
T Consensus 111 -~~~~~l-----~~~~l~~p~~----l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~-~P~glaiD~~~ 178 (263)
T d1npea_ 111 -TQRRVL-----FDTGLVNPRG----IVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLG-LPNGLTFDAFS 178 (263)
T ss_dssp -CSCEEE-----ECSSCSSEEE----EEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCS-CEEEEEEETTT
T ss_pred -CEEEEE-----ECCCCCCCCE----EEEECCCCCEEEEECCCCCCEEEEECCCCCC-CEEEEEECCC-CCCEEEEEECC
T ss_conf -167777-----1256668727----9992566927995348997689996678997-2365530355-55307995047
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC-C
Q ss_conf 999999988990999987799722674167887888859999922999999999977992999967899721799915-7
Q 000681 1198 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-H 1276 (1354)
Q Consensus 1198 g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~-h 1276 (1354)
+.+.++-...+.|...|+.... ........ ....++++. + +.+..+-...+.|...|..++ +....+.. .
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~----~~P~~lav~-~--~~lYwtd~~~~~I~~~~~~~g-~~~~~~~~~~ 249 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPG-RRKVLEGL----QYPFAVTSY-G--KNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHK 249 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEE-EEEEEECC----CSEEEEEEE-T--TEEEEEETTTTEEEEEETTTT-EEEEEECCSS
T ss_pred CEEEEEECCCCEEEEEECCCCC-EEEEECCC----CCCEEEEEE-C--CEEEEEECCCCEEEEEECCCC-CCCEEECCCC
T ss_conf 5899992899999999999997-69998899----986899999-9--999999999997999989899-5106989888
Q ss_pred CCCEEEEEECC
Q ss_conf 99858999927
Q 000681 1277 RGSLSALAVHR 1287 (1354)
Q Consensus 1277 ~~~ItsLafsp 1287 (1354)
......+++.+
T Consensus 250 ~~~~~gi~v~~ 260 (263)
T d1npea_ 250 QTRLYGITIAL 260 (263)
T ss_dssp CCCCCCEEEEC
T ss_pred CCCCCEEEEEC
T ss_conf 99856589838
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=89.45 E-value=0.35 Score=20.73 Aligned_cols=241 Identities=9% Similarity=0.071 Sum_probs=114.2
Q ss_pred EEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECC------CEEEEEEC
Q ss_conf 799995899999999789-94999987999367896279999998699999860899899999689------80999986
Q 000681 1045 KTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWKD 1117 (1354)
Q Consensus 1045 ~sL~fspdg~~Latgs~D-g~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~D------G~IrIWdl 1117 (1354)
....+.+++.+++.|+.+ ..+.+||..+..-.. ......+ ..-..... -.|+.+++.|+.+ ..+.+||.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~ 154 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSP 154 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEE--CTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred EEEEEECCCCEEEEECCCCCCEEEECCCCCCCCC-CCCCCCC-CCCCCEEE--ECCCCEEEECCCCCCCCCCCEEEEECC
T ss_conf 6899946886898636888621675675574421-5656642-10130355--317826652136633354320566348
Q ss_pred CCCCCCCEEEEEEECC----CCCCCCCCC-CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCC-----CC
Q ss_conf 6777850488401024----589997112-50379993599949999789819999888885134542--499-----99
Q 000681 1118 YDQKDKQKLVTAFSSI----QGHKPGVRC-SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI--PSS-----SD 1185 (1354)
Q Consensus 1118 ~~~~~~~~lvs~~~~l----~~h~~~V~s-i~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l--~~~-----~~ 1185 (1354)
.+ ............ ..+...+.. ....+.-.+++..+..++.++.+.++|..+.. ....- ... ..
T Consensus 155 ~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 155 SS--KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp TT--TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCC
T ss_pred CC--CCEEECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCC-EEECCCCCCCCCCCCCC
T ss_conf 88--9551158876443113466513650422699970798778746867747814866671-73166556676657632
Q ss_pred CCEEEEEEECCCCCEEEEEECCC--------EEEEEECCCCCE---EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC
Q ss_conf 98279999749999999998899--------099998779972---2674167887888859999922999999999977
Q 000681 1186 CSISALTASQVHGGQLAAGFVDG--------SVRLYDVRTPDM---LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1254 (1354)
Q Consensus 1186 ~~VtsI~~~s~~g~~Lvsgs~DG--------sIrIwDlrs~~~---~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~ 1254 (1354)
..-.++.....+++.++.|+... ...+.+...... ........ .....-.+....++ +++++.|+.
T Consensus 232 ~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~~~~d--g~i~v~GG~ 308 (387)
T d1k3ia3 232 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPD--GSTFITGGQ 308 (387)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTT--SCEEEECCB
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCC-CCCCCCCEEEECCC--CEEEEECCC
T ss_conf 226378861358824788753678877521000001111135678840603665-66543433566058--749998884
Q ss_pred CC-----------CEEEEECCCCCCCEEEEECC---CCCEEEEEECCCCCEEEEEEC
Q ss_conf 99-----------29999678997217999157---998589999279998999968
Q 000681 1255 AG-----------DIQFLDIRNHKDAYLTIDAH---RGSLSALAVHRHAPIIASGSA 1297 (1354)
Q Consensus 1255 DG-----------~I~IWDi~~~~~~i~~l~~h---~~~ItsLafspdg~~Lasgs~ 1297 (1354)
++ .+.+||..+. ....+... +..-....+.++|++++.|+.
T Consensus 309 ~~~~~~~~~~~~~~ve~Ydp~~~--~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 309 RRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCCCCCEECEEEEEECCCC--EEEECCCCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 56766889947010798979999--18878899975531279999889999999698
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.46 E-value=0.41 Score=20.26 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=68.9
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE-EECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 9993599949999789819999888885134542499999827999-974999999999889909999877997226741
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1225 (1354)
Q Consensus 1147 i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~-~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~ 1225 (1354)
.+++|..+.+++...+............ ..........+. ...+.. ......|.+.-+|+.+++..-+..
T Consensus 391 ~a~dP~~~~~yv~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~G~l~AiD~~TG~~~W~~~ 461 (571)
T d2ad6a1 391 DSYDPESRTLYAGLNHICMDWEPFMLPY------RAGQFFVGATLAMYPGPNG---PTKKEMGQIRAFDLTTGKAKWTKW 461 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCC------CTTSCCCCEEEEEEECTTS---TTSCCCEEEEEECTTTCCEEEEEE
T ss_pred CEECCCCCEEEEECCCCCCCCCCCCCCC------CCCCCCCCCCEEECCCCCC---CCCCCCCCEEEECCCCCCEEEECC
T ss_conf 2077888628976553443343002456------6775321563033146677---666775617885367784642767
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCC-CEEEEEECCCCC-EEEEEE
Q ss_conf 67887888859999922999999999977992999967899721799915799-858999927999-899996
Q 000681 1226 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAP-IIASGS 1296 (1354)
Q Consensus 1226 ~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~-~ItsLafspdg~-~Lasgs 1296 (1354)
.......+.+ .-. +.++++|+.||.++.+|.+++ +.+..+..... .-.-+.+..+|+ ++++..
T Consensus 462 ~~~~~~~g~l-----~Ta--gglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 462 EKFAAWGGTL-----YTK--GGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp ESSCCCSBCE-----EET--TTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCEE-----EEC--CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCEECCEEEEECCEEEEEEEE
T ss_conf 8999875605-----966--997999778996999999998-6878998999965156489889999999990
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.47 Score=19.82 Aligned_cols=236 Identities=10% Similarity=0.089 Sum_probs=134.3
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCC--CCEEEEEEE
Q ss_conf 99999789949999879993678962799999986999998608998999996-898099998667778--504884010
Q 000681 1055 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKD--KQKLVTAFS 1131 (1354)
Q Consensus 1055 ~Latgs~Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs-~DG~IrIWdl~~~~~--~~~lvs~~~ 1131 (1354)
+|+.+. ...|+-.++++........ .. ..+.++.| ....+.++... ..+.|.-.++..... ..+.+
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~---~~~~~id~--d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~---- 71 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NL---RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---- 71 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SC---SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEE----
T ss_pred EEEEEC-CCEEEEEECCCCCCEEEEC-CC---CCEEEEEE--EECCCEEEEEECCCCEEEEEEECCCCCCCCEEEE----
T ss_conf 999978-7718999899985266417-99---85599999--8089999999997997999993578887614899----
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEE-CCCE
Q ss_conf 24589997112503799935999499997-898199998888851345424999998279999749999999998-8990
Q 000681 1132 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGS 1209 (1354)
Q Consensus 1132 ~l~~h~~~V~si~~~i~~sp~~~~Llsag-~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~~s~~g~~Lvsgs-~DGs 1209 (1354)
+........+ +++...++.++.+. ..+.|.+.++.... ....+...... ...++..+..|.++++.. ..+.
T Consensus 72 -~~~~~~~p~g----lAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~-P~~l~vd~~~g~ly~~~~~~~~~ 144 (266)
T d1ijqa1 72 -ISRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSK-PRAIVVDPVHGFMYWTDWGTPAK 144 (266)
T ss_dssp -ECSSCSCCCE----EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCC-EEEEEEETTTTEEEEEECSSSCE
T ss_pred -EECCCCCCCE----EEEEECCCEEEEEECCCCEEEEEECCCCE-EEEEECCCCCC-CCEEEEECCCCEEEEECCCCCCC
T ss_conf -8489998546----89864265289995489999857648953-78887279988-33699980039488712699730
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEE-EEECCCCEEEEECCCCCCCEEEEECC--CCCEEEEEEC
Q ss_conf 99998779972267416788788885999992299999999-99779929999678997217999157--9985899992
Q 000681 1210 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVH 1286 (1354)
Q Consensus 1210 IrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lv-sgs~DG~I~IWDi~~~~~~i~~l~~h--~~~ItsLafs 1286 (1354)
|.-.++.... ....... .-.....+++.+. +..|. +-...+.|...++... ......... .....++++.
T Consensus 145 I~r~~~dGs~-~~~l~~~---~~~~p~gl~iD~~--~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~ 217 (266)
T d1ijqa1 145 IKKGGLNGVD-IYSLVTE---NIQWPNGITLDLL--SGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF 217 (266)
T ss_dssp EEEEETTSCC-EEEEECS---SCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE
T ss_pred EEEECCCCCC-EECCCCC---CCCEEEEEEEECC--CCEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCCCCEEEEEE
T ss_conf 2686368883-4412004---5320169986133--5699995289679999989999-779999389855664799998
Q ss_pred CCCCEEEEEECCCCEEEEE-CCCCEEEEEEC
Q ss_conf 7999899996899199995-79934789825
Q 000681 1287 RHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1316 (1354)
Q Consensus 1287 pdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~ 1316 (1354)
. +.++.+-..++.|...+ .++.....+..
T Consensus 218 ~-~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 218 E-DKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred C-CEEEEEECCCCEEEEEECCCCCCEEEEEC
T ss_conf 9-99999989999699999989961599776
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=86.78 E-value=0.51 Score=19.58 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=13.2
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 99999997799299996789972179991
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTID 1274 (1354)
Q Consensus 1246 g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~ 1274 (1354)
+.+++.|+.||.++.+|.+++ +.+..++
T Consensus 469 gglVF~G~~dg~l~A~Da~tG-e~LW~~~ 496 (560)
T d1kv9a2 469 GNLVFQGTAAGQMHAYSADKG-EALWQFE 496 (560)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred CCEEEEECCCCCEEEEECCCC-CEEEEEE
T ss_conf 998999778981999999998-5827998
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.55 Score=19.31 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=117.6
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCC----EEEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEE
Q ss_conf 9837999958999999997-89949999879993----67896279999998699999860899899999-689809999
Q 000681 1042 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIW 1115 (1354)
Q Consensus 1042 ~~I~sL~fspdg~~Latgs-~Dg~I~IWd~~tg~----~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtg-s~DG~IrIW 1115 (1354)
..+..+.|++.++.+..++ ..+.|.-.+++... ......... ..+.++++ +..++.|+.+ ...+.|.+.
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~---~~p~glAv--D~~~~~lY~~d~~~~~I~v~ 104 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---QAPDGLAV--DWIHSNIYWTDSVLGTVSVA 104 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---SCCCEEEE--ETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCC---CCCCEEEE--EECCCEEEEEECCCCEEEEE
T ss_conf 85599999808999999999799799999357888761489984899---98546898--64265289995489999857
Q ss_pred ECCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 866777850488401024589997112503799935999499997--898199998888851345424999998279999
Q 000681 1116 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1193 (1354)
Q Consensus 1116 dl~~~~~~~~lvs~~~~l~~h~~~V~si~~~i~~sp~~~~Llsag--~Dg~I~IWDl~t~~~~i~~l~~~~~~~VtsI~~ 1193 (1354)
++.. ...... .......... ++.++..+.++.+. ..+.|...++.... ........-. ..++++.
T Consensus 105 ~~~g--~~~~~~-----~~~~~~~P~~----l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~-~p~gl~i 171 (266)
T d1ijqa1 105 DTKG--VKRKTL-----FRENGSKPRA----IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQ-WPNGITL 171 (266)
T ss_dssp ETTS--SSEEEE-----EECTTCCEEE----EEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCS-CEEEEEE
T ss_pred ECCC--CEEEEE-----ECCCCCCCCE----EEEECCCCEEEEECCCCCCCEEEECCCCCC-EECCCCCCCC-EEEEEEE
T ss_conf 6489--537888-----7279988336----999800394887126997302686368883-4412004532-0169986
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEE
Q ss_conf 74999999999889909999877997226741678878888599999229999999999779929999678997217999
Q 000681 1194 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1273 (1354)
Q Consensus 1194 ~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l 1273 (1354)
....+.+.++-...+.|...|+..... ....... .......++++.. +.++.+-..++.|...+..++ .....+
T Consensus 172 D~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~-~~~~~p~~lav~~---~~ly~td~~~~~I~~~~~~~g-~~~~~~ 245 (266)
T d1ijqa1 172 DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE-KRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTG-SDVNLL 245 (266)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECT-TTTSSEEEEEEET---TEEEEEETTTTEEEEEETTTC-CCCEEE
T ss_pred ECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECC-CCCCCCEEEEEEC---CEEEEEECCCCEEEEEECCCC-CCEEEE
T ss_conf 133569999528967999998999977-9999389-8556647999989---999999899996999999899-615997
Q ss_pred ECCCCCEEE
Q ss_conf 157998589
Q 000681 1274 DAHRGSLSA 1282 (1354)
Q Consensus 1274 ~~h~~~Its 1282 (1354)
......+..
T Consensus 246 ~~~~~~p~~ 254 (266)
T d1ijqa1 246 AENLLSPED 254 (266)
T ss_dssp ECSCSCCCC
T ss_pred ECCCCCCEE
T ss_conf 768999528
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=83.72 E-value=0.69 Score=18.59 Aligned_cols=137 Identities=9% Similarity=0.081 Sum_probs=59.4
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf 99935999499997898199998888851345424999--9982799997499999999988990999987799722674
Q 000681 1147 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1224 (1354)
Q Consensus 1147 i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~--~~~VtsI~~~s~~g~~Lvsgs~DGsIrIwDlrs~~~~~~~ 1224 (1354)
.+++|+.+.+++...+....++...... ......... ........... +. -.....-|.+.-||..+++..-+.
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~--~~-p~~~~~~G~l~AiD~~tGk~~W~~ 473 (573)
T d1kb0a2 398 MSFNPQTGLVYLPAQNVPVNLMDDKKWE-FNQAGPGKPQSGTGWNTAKFFN--AE-PPKSKPFGRLLAWDPVAQKAAWSV 473 (573)
T ss_dssp CEEETTTTEEEEEEEECCCEEEECTTCC-TTCCCTTSTTGGGTCCCCEEEC--SS-CCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CC-CCCCCCCCCEEEECCCCCCEEEEE
T ss_conf 4208876169854111542531155532-3557787531035532223345--68-877787361787578778667051
Q ss_pred ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCE-EEEEECCCCC-EEEEE
Q ss_conf 16788788885999992299999999997799299996789972179991579985-8999927999-89999
Q 000681 1225 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL-SALAVHRHAP-IIASG 1295 (1354)
Q Consensus 1225 ~~~~~~h~~~I~si~fsp~~~g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~h~~~I-tsLafspdg~-~Lasg 1295 (1354)
.... +...-...-. +.++++|+.||.++.+|.+++ +.+.+++...+.. .-+.+..+|+ +++..
T Consensus 474 ~~~~-----p~~gg~lsta--gglVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~GkQYv~v~ 538 (573)
T d1kb0a2 474 EHVS-----PWNGGTLTTA--GNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGRQYVSVA 538 (573)
T ss_dssp EESS-----SCCCCEEEET--TTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCC-----CCCCCEEEEC--CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCCCCEEEEECCEEEEEEE
T ss_conf 6889-----8877607986--998999779991999999988-685799898994516779998999999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.83 E-value=0.75 Score=18.35 Aligned_cols=253 Identities=12% Similarity=0.132 Sum_probs=138.1
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 99499998799936789627999999869999986089989999968980999986677785048840102458999711
Q 000681 1062 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1141 (1354)
Q Consensus 1062 Dg~I~IWd~~tg~~l~~l~~h~~~~~~ItsL~f~~s~d~~~Lvtgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~ 1141 (1354)
...|.|-|..+.....+-.... = +.-. .|....|+.-+ ..++.|+|+++ +.++. ... ....|.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~A-----d-sAIM--hP~~~IiALra-g~~LQiFnlet---K~klk----s~~-~~e~Vv 106 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISA-----D-SAIM--NPASKVIALKA-GKTLQIFNIEM---KSKMK----AHT-MTDDVT 106 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCC-----S-EEEE--CSSSSEEEEEE-TTEEEEEETTT---TEEEE----EEE-CSSCCC
T ss_pred CCEEEEEECCCCCCCEECCCCH-----H-HHHC--CCCCCEEEEEC-CCEEEEEEHHH---HHHHC----EEE-CCCCCE
T ss_conf 8439999889987633144361-----6-6530--88875799962-88689984468---22111----587-688857
Q ss_pred CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC---CCCEEEEEEECCCCCEEEEEE-------CCCEEE
Q ss_conf 2503799935999499997898199998888851345424999---998279999749999999998-------899099
Q 000681 1142 CSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS---DCSISALTASQVHGGQLAAGF-------VDGSVR 1211 (1354)
Q Consensus 1142 si~~~i~~sp~~~~Llsag~Dg~I~IWDl~t~~~~i~~l~~~~---~~~VtsI~~~s~~g~~Lvsgs-------~DGsIr 1211 (1354)
- -.|-. ...|... .+..|+-|+++....+.+.+..|. +..|..- ..+++.++++..+ -.|.+.
T Consensus 107 f----WkWis-~~~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY-~~d~~~kW~~l~GI~~~~~~i~G~mQ 179 (327)
T d1utca2 107 F----WKWIS-LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY-RTDAKQKWLLLTGISAQQNRVVGAMQ 179 (327)
T ss_dssp E----EEESS-SSEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE-EECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred E----EEECC-CCEEEEE-CCCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEE-EECCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 9----99447-9889999-1881699735699985266232101248638998-98999988999957137883058888
Q ss_pred EEECCCCCEEEEEECCCCCCCCCEEEEEEECCC-CCCEEEEEE---CCCCEEEEECCCCC---CC--EEEEE------CC
Q ss_conf 998779972267416788788885999992299-999999997---79929999678997---21--79991------57
Q 000681 1212 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL-DPAKIVSAS---QAGDIQFLDIRNHK---DA--YLTID------AH 1276 (1354)
Q Consensus 1212 IwDlrs~~~~~~~~~~~~~h~~~I~si~fsp~~-~g~~Lvsgs---~DG~I~IWDi~~~~---~~--i~~l~------~h 1276 (1354)
+|....+. .+.++ ||.+....+.+..+. ....++.+. ..+++++.++.... .+ .+... ..
T Consensus 180 LYS~er~~--sQ~ie---Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~ 254 (327)
T d1utca2 180 LYSVDRKV--SQPIE---GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ 254 (327)
T ss_dssp EEETTTTE--EEEEC---CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCT
T ss_pred EEEECCCC--CCCCC---CEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 99802286--75232---03465688870799887309999987898747999986887557888753268877796346
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 99858999927999899996899199995-7993478982557864445678749999944997999998898099
Q 000681 1277 RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1351 (1354)
Q Consensus 1277 ~~~ItsLafspdg~~Lasgs~Dg~I~Iwd-~~g~~l~~i~~~h~~fl~~~~~~V~sLafspdg~~Lasgs~Dg~I~ 1351 (1354)
.+-..++.+++.-.++..-+.-|.|.+|| .++..+..-+- .. ..|...+-+.+..-+++...+|.|.
T Consensus 255 ~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI-s~-------~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 255 NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI-SG-------ETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC-CS-------SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CC-------CCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 88477999643379999996675899997566628999404-78-------8448962678886089987897699
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=82.12 E-value=0.79 Score=18.17 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=16.1
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 999999977992999967899721799915
Q 000681 1246 PAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1275 (1354)
Q Consensus 1246 g~~Lvsgs~DG~I~IWDi~~~~~~i~~l~~ 1275 (1354)
+.+++.|+.||.++.+|.+++ +.+..++.
T Consensus 484 gglVF~G~~Dg~l~A~Da~TG-e~LW~~~~ 512 (596)
T d1w6sa_ 484 GDLVFYGTLDGYLKARDSDTG-DLLWKFKI 512 (596)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCC-CEEEEEEC
T ss_conf 997999789995999999998-48369989
|