Citrus Sinensis ID: 000689
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1350 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZR72 | 1286 | ABC transporter B family | yes | no | 0.938 | 0.985 | 0.880 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.922 | 0.995 | 0.529 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.905 | 0.960 | 0.492 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.894 | 0.969 | 0.489 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.894 | 0.983 | 0.488 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.898 | 0.972 | 0.490 | 0.0 | |
| Q6YUU5 | 1245 | Putative multidrug resist | no | no | 0.902 | 0.979 | 0.458 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.895 | 0.986 | 0.435 | 0.0 | |
| Q9LHD1 | 1240 | ABC transporter B family | no | no | 0.885 | 0.963 | 0.440 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.904 | 0.955 | 0.45 | 0.0 |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2289 bits (5931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1117/1269 (88%), Positives = 1213/1269 (95%), Gaps = 2/1269 (0%)
Query: 77 EPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNV 136
EPKK +++ V ELFRFAD LDYVLM IGS+GAFVHGCS P+FLRFFADLVNSFGSN
Sbjct: 18 EPKK-AEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNS 76
Query: 137 NNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQ 196
NN++KMM+EVLKYA YFLVVGAAIWASSWAEISCWMW+GERQ+ KMRIKYLEAALNQD+Q
Sbjct: 77 NNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQ 136
Query: 197 YFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLA 256
+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+ATFV+GF VGF+AVWQLALVTLA
Sbjct: 137 FFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLA 196
Query: 257 VVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSA 316
VVPLIAVIG IH T+L+KL+ KSQE+LSQAGNIVEQTVVQIRVV AFVGES+A QAYSSA
Sbjct: 197 VVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSA 256
Query: 317 LKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMI 376
LK+AQ+LGYK+G AKGMGLGATYFVVFC YALLLWYGGYLVRHH TNGGLAIATMFAVMI
Sbjct: 257 LKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMI 316
Query: 377 GGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFS 436
GGLAL Q+APS++AFAKAKVAAAKIFRIIDHKP+I+RNSESG+ELDSV+GL+ELK+VDFS
Sbjct: 317 GGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFS 376
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS 496
YPSRP+V+ILNNF L+VPAGKTIALVGSSGSGKSTVVSLIERFYDP SGQVLLDG D+K+
Sbjct: 377 YPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKT 436
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
LKLRWLRQQIGLVSQEPALFAT+IKENILLGRPDAD EIEEAARVANA+SFIIKLPDGF
Sbjct: 437 LKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGF 496
Query: 557 DTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR 616
DTQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR
Sbjct: 497 DTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR 556
Query: 617 TTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALN 676
TTL+IAHRLSTIRKAD+VAVLQQGSVSEIGTHDEL +KGENGVYAKLI+MQEAAHETA++
Sbjct: 557 TTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMS 616
Query: 677 NARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDA-TYPSYRHEK 735
NARKSSARPSSARNSVSSPI+ RNSSYGRSPYSRRLSDFSTSDFSLS+DA +YP+YR+EK
Sbjct: 617 NARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEK 676
Query: 736 LAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYM 795
LAFK+QA+SFWRLAKMNSPEW YAL+GSVGSVICGSL+AFFAYVLSA++SVYYNPDH YM
Sbjct: 677 LAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYM 736
Query: 796 IREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEE 855
I++I KYCYLLIGLSSA L+FNTLQHSFWDIVGENLTKRVREKML+AVLKNE+AWFDQEE
Sbjct: 737 IKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEE 796
Query: 856 NESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVV 915
NESARIAARLALDANNVRSAIGDRI VIVQNTALMLVACTAGFVLQWRLALVL+AVFPVV
Sbjct: 797 NESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVV 856
Query: 916 VAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975
VAATVLQKMFM GFSGD+EAAH+K TQLAGEAI NVRTVAAFNSE IV L+++NL+ PL
Sbjct: 857 VAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPL 916
Query: 976 RRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGA 1035
+RCFWKGQIAGSGYGVAQFCLYASYALGLWY+SWLVKHGISDFSKTIRVFMVLMVSANGA
Sbjct: 917 KRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGA 976
Query: 1036 AETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSR 1095
AETLTLAPDFIKGG+AMRSVF+LLDRKTEIEPDDPD TPVPDRLRGEVELKH+DFSYPSR
Sbjct: 977 AETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSR 1036
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155
PDI IFRDLSLRARAGKTLALVGPSGCGKSSVI+L+QRFYEPSSGRVMIDGKDIRKYNLK
Sbjct: 1037 PDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLK 1096
Query: 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215
++R+H+AIVPQEPCLF +TIYENIAYGHE ATE+EII+AA LA+A KFIS+LP+GYKT+V
Sbjct: 1097 AIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYV 1156
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIV 1275
GERGVQLSGGQKQR+AIARA VRKAEIMLLDEATSALDAESERSVQEALD+ACSG+T+IV
Sbjct: 1157 GERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIV 1216
Query: 1276 VAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSG 1335
VAHRLSTIRNAHVIAVIDDGKVAE GSHSHLLKN+PDG YARMIQLQRFTH+QVIGMTSG
Sbjct: 1217 VAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQRFTHTQVIGMTSG 1276
Query: 1336 SSSSARPKD 1344
SSS + D
Sbjct: 1277 SSSRVKEDD 1285
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Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1345 bits (3481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/1265 (52%), Positives = 915/1265 (72%), Gaps = 19/1265 (1%)
Query: 64 ENNSSSSSSAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLR 123
E N++ + + KK P +LF FAD DY+LM +GSLGA VHG S P+F
Sbjct: 3 ETNTTDAKTVPAEAEKKKEQSLP--FFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFL 60
Query: 124 FFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMR 183
F +VN FG N ++ +M+ EV +Y+ YF+ +G + SS+AEI+CWM++GERQ +R
Sbjct: 61 LFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALR 120
Query: 184 IKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVG 243
KYLEA L QDV +FDT+ RT D+V++++TD ++VQDAISEK+GNFIHYL+TF+ G VG
Sbjct: 121 KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
Query: 244 FSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAF 303
F + W+LAL+++AV+P IA G ++A +L + KS+E+ + AG I EQ + Q+R V+++
Sbjct: 181 FVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSY 240
Query: 304 VGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTN 363
VGESKAL AYS A++ +LGYK+G AKG+GLG TY + S+AL+ WY G +R+ T+
Sbjct: 241 VGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 300
Query: 364 GGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDS 423
GG A +F+ ++GG++L Q+ ++ AF+K K A K+ II+ +P+I ++ G LD
Sbjct: 301 GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQ 360
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
V G IE K V FSYPSRP+V I NF++ P+GKT+A+VG SGSGKSTVVSLIERFYDP
Sbjct: 361 VHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
SGQ+LLDG +IK+L+L++LR+QIGLV+QEPALFATTI ENIL G+PDA + E+E AA A
Sbjct: 421 SGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAA 480
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
NA+SFI LP G+DTQV ERGVQLSGGQKQRIAIARAMLK+P ILLLDEATSALD+ SE
Sbjct: 481 NAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSES 540
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+VQEALDR M+GRTT+V+AHRL TIR D +AV+QQG V E GTH+ELIAK +G YA L
Sbjct: 541 IVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK--SGAYASL 598
Query: 664 IRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLS 723
IR QE +N R + +S+S+ ++ RS R LS +S
Sbjct: 599 IRFQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSL-----RSGSLRNLS----YSYSTG 649
Query: 724 LDATYPSYRHEKLAFKEQA--SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLS 781
D + + K +A + F+RL K+NSPEW Y+++G+VGS++ G + FA V+S
Sbjct: 650 ADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMS 709
Query: 782 AIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLA 841
++ V+Y D+ M R+ +Y ++ IG + +QH F+ I+GENLT RVR ML+
Sbjct: 710 NMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLS 769
Query: 842 AVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQ 901
A+L+NE+ WFD++E+ S+ IAARLA DA +V+SAI +RI VI+QN +L + F+++
Sbjct: 770 AILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVE 829
Query: 902 WRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSEL 961
WR++L+++ FP++V A Q++ +KGF+GD AH+K + +AGE + N+RTVAAFN++
Sbjct: 830 WRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQS 889
Query: 962 MIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKT 1021
I+ LF L+ P +R ++ Q +G +G++Q LY S AL LWY + LV G+S FSK
Sbjct: 890 KILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKV 949
Query: 1022 IRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRG 1081
I+VF+VL+++AN AET++LAP+ I+GG A+ SVF +LDR+T I+PDD DA PV + +RG
Sbjct: 950 IKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPV-ETIRG 1008
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++E +HVDF+YPSRPD+ +FRD +LR RAG + ALVG SG GKSSVIA+++RFY+P +G+
Sbjct: 1009 DIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGK 1068
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANAD 1201
VMIDGKDIR+ NLKSLR + +V QEP LFA+TI++NIAYG + ATESE+I+AAR ANA
Sbjct: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAH 1128
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
FIS LP+GYKT VGERGVQLSGGQKQR+AIARA ++ ++LLDEATSALDAESE +Q
Sbjct: 1129 GFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQ 1188
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
EAL+R G+TT+VVAHRLSTIR I VI DG++ E GSHS L+ + P+G Y+R++QL
Sbjct: 1189 EALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELV-SRPEGAYSRLLQL 1247
Query: 1322 QRFTH 1326
Q TH
Sbjct: 1248 Q--TH 1250
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1254 (49%), Positives = 858/1254 (68%), Gaps = 31/1254 (2%)
Query: 73 AANSEPKKPSDVT--PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVN 130
+ + P+K ++T V L +LF FAD D VLM +GS+GA +HG S PIF FF L+N
Sbjct: 44 SGDPAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLIN 103
Query: 131 SFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAA 190
G + V KY+ F+ + AI SSW E++CWM TGERQ+ KMR YL +
Sbjct: 104 IIGLAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSM 163
Query: 191 LNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQL 250
L+QD+ FDTE T +V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFA+GF++VWQ+
Sbjct: 164 LSQDISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQI 223
Query: 251 ALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKAL 310
+LVTL++VPLIA+ G I+A L + +++ +AG I E+ + +R V AF GE +A+
Sbjct: 224 SLVTLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAV 283
Query: 311 QAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIAT 370
+ Y AL+ + G K+G KG+GLG+ + V+F S+ALL+W+ +V +GG + T
Sbjct: 284 RLYREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTT 343
Query: 371 MFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIEL 430
M V+I GL+L QAAP ISAF +AK AA IF++I+ +++SG +L V G I+
Sbjct: 344 MLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQF 403
Query: 431 KHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLD 490
K FSYPSRP+V I + +L +PAGK +ALVG SGSGKSTV+SLIERFY+P SG VLLD
Sbjct: 404 KDATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLD 463
Query: 491 GHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
G++I L ++WLR QIGLV+QEPALFATTI+ENIL G+ DA EI AA+++ A SFI
Sbjct: 464 GNNISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFIN 523
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALD 610
LP+GF+TQV ERG+QLSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESEK VQEALD
Sbjct: 524 NLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALD 583
Query: 611 RFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
R M+GRTT+V+AHRLST+R AD++AV+ +G + E G H+ LI+ +G Y+ L+R+QE A
Sbjct: 584 RVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISN-PDGAYSSLLRLQETA 642
Query: 671 HETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPS 730
+ ++ +RP S + YSR LS +S S T P
Sbjct: 643 SLQRNPSLNRTLSRPHSIK------------------YSRELSRTRSSFCSERESVTRPD 684
Query: 731 YRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLS-AIMSVYYN 789
K+ + RL M P+W+Y + G++ + I GS FA +S A++S Y
Sbjct: 685 GADPS---KKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSG 741
Query: 790 PDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIA 849
D +EI K L S L+ T++H + +GE LT RVRE M A+LKNEI
Sbjct: 742 WDETQ--KEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIG 799
Query: 850 WFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLI 909
WFD+ +N S+ +A+RL DA +++ + DR +++QN L++ + F+L WRL LV++
Sbjct: 800 WFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVL 859
Query: 910 AVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSS 969
A +P+V++ + +K+FM+G+ GD+ A+ KA LAGE++ N+RTVAAF +E I+ L+S
Sbjct: 860 ATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSR 919
Query: 970 NLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLM 1029
L P + F +GQIAG YGV+QF +++SY L LWY S L+ G++ F ++ FMVL+
Sbjct: 920 ELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLI 979
Query: 1030 VSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVD 1089
V+A ETL LAPD +KG + + SVF++LDRKT+I + + + + G +ELK V
Sbjct: 980 VTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEEL---NNVEGTIELKGVH 1036
Query: 1090 FSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149
FSYPSRPD+ IFRD L RAGK++ALVG SG GKSSVI+L+ RFY+P++G+VMI+GKDI
Sbjct: 1037 FSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDI 1096
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209
+K +LK+LR+H+ +V QEP LFA+TIYENI YG+E A++SE++E+A LANA FI+SLP+
Sbjct: 1097 KKLDLKALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPE 1156
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
GY T VGERGVQ+SGGQ+QR+AIARA ++ I+LLDEATSALD ESER VQ+ALDR +
Sbjct: 1157 GYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMA 1216
Query: 1270 GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
+TT+VVAHRLSTI+NA I+V+ GK+ E GSH L+ N G Y ++I LQ+
Sbjct: 1217 NRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNK-SGPYFKLISLQQ 1269
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1212 bits (3137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 608/1242 (48%), Positives = 855/1242 (68%), Gaps = 35/1242 (2%)
Query: 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEV 146
V L LF AD LDY LM +G LGA +HG + P+F FF +++S G+ + + V
Sbjct: 30 VSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSRV 89
Query: 147 LKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSD 206
+ A Y + +G + S+W +SCWM TGERQ+ ++RI YL++ L +D+ +FDTE R S+
Sbjct: 90 SQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 149
Query: 207 VVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266
+++ I++DA++VQDAI +K + + YL+ F+ GF +GF +VWQL L+TL VVPLIA+ G
Sbjct: 150 LIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 209
Query: 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326
+A ++ ++ KS+ A + AG + E+ + Q+R V+AFVGE KA+++YS++LK A +LG +
Sbjct: 210 GYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKR 269
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP 386
SG AKG+G+G TY ++FC++ALLLWY LVRH TNG A T+ V+ G AL QAAP
Sbjct: 270 SGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAP 329
Query: 387 SISAFAKAKVAAAKIFRIIDHKPSIDRNSES------GLELDSVSGLIELKHVDFSYPSR 440
S+SA AK +VAAA IFR+I + NSES G L +V+G IE + V F+YPSR
Sbjct: 330 SLSAIAKGRVAAANIFRMIG-----NNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSR 384
Query: 441 PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500
P + + N S T+ +GKT A VG SGSGKST++S+++RFY+P SG++LLDG+DIKSLKL+
Sbjct: 385 PNM-VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLK 443
Query: 501 WLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQV 560
W R+Q+GLVSQEPALFATTI NILLG+ +A++++I EAA+ ANA SFI LP+G++TQV
Sbjct: 444 WFREQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQV 503
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620
E G QLSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESEK+VQ+ALD M RTT+V
Sbjct: 504 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIV 563
Query: 621 IAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARK 680
+AHRLSTIR D + VL+ G V E G+H EL+ +G G YA L+ QE
Sbjct: 564 VAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRG--GDYATLVNCQE------------ 609
Query: 681 SSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKE 740
P S+ S S G S R S TS F + + T +
Sbjct: 610 --TEPQENSRSIMSETC--KSQAGSSSSRRVSSSRRTSSFRVDQEKT---KNDDSKKDFS 662
Query: 741 QASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIA 800
+S W L K+NSPEW YAL+GS+G+V+ G+ F+ ++ +++ +Y+P + R++
Sbjct: 663 SSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVE 722
Query: 801 KYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESAR 860
K + G LQH F+ ++GE LT RVR + +A+L NEI WFD +EN +
Sbjct: 723 KVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGS 782
Query: 861 IAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATV 920
+ + LA DA VRSA+ DR+ IVQN +L + A F WR+A V+ A FP+++AA++
Sbjct: 783 LTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASL 842
Query: 921 LQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFW 980
+++F+KGF GD A+S+AT +A EAI N+RTVAA+ +E I F+ L P + F
Sbjct: 843 TEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFV 902
Query: 981 KGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT 1040
+G I+G GYG++QF + SYALGLWY S L+ H ++F +I+ FMVL+V+A +ETL
Sbjct: 903 RGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLA 962
Query: 1041 LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPI 1100
L PD +KG +A+ SVF +L R+T+I PD P++ V +++G++E ++V F YP+RP+I I
Sbjct: 963 LTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMV-SQVKGDIEFRNVSFVYPTRPEIDI 1021
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
F++L+LR AGK+LA+VGPSG GKS+VI L+ RFY+PS+G + IDG+DI+ NL+SLR+
Sbjct: 1022 FKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKK 1081
Query: 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGV 1220
+A+V QEP LF++TIYENI YG+E+A+E+EI+EAA+ ANA +FI + +GYKT G++GV
Sbjct: 1082 LALVQQEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGV 1141
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
QLSGGQKQRVAIARA ++ ++LLDEATSALD SE+ VQEALD+ G+TT++VAHRL
Sbjct: 1142 QLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRL 1201
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
STIR A +AV+ G+V E GSH L+ + P+G Y ++ LQ
Sbjct: 1202 STIRKADTVAVLHKGRVVEKGSHRELV-SIPNGFYKQLTSLQ 1242
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/1254 (48%), Positives = 859/1254 (68%), Gaps = 47/1254 (3%)
Query: 72 SAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNS 131
+AA E K+PS V +LF FAD D VLMA+GS+GA +HG S P+F FF L+N
Sbjct: 13 AAAEKEKKRPS----VSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINI 68
Query: 132 FGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAAL 191
G + +V KY+ F+ + I SSW E++CWM TGERQ+ K+R YL + L
Sbjct: 69 IGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAYLRSML 128
Query: 192 NQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLA 251
+QD+ FDTE+ T +V+ AI ++ ++VQDAISEK+GNF+H+++ F+ GFA+GF++VWQ++
Sbjct: 129 SQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQIS 188
Query: 252 LVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQ 311
LVTL++VP IA+ G I+A + L + +++ +A I E+ + +R V AF GE KA+
Sbjct: 189 LVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGEEKAVS 248
Query: 312 AYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATM 371
+Y AL+ G K+G AKG+GLG+ +FV+F S+ALL+W+ +V NGG + TM
Sbjct: 249 SYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGESFTTM 308
Query: 372 FAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSE--SGLELDSVSGLIE 429
V+I GL+L QAAP IS F +A AA IF++I+ RN+E +G +L +V+G I
Sbjct: 309 LNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIE------RNTEDKTGRKLGNVNGDIL 362
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
K V F+YPSRP+V I + + +PAGK +ALVG SGSGKST++SLIERFY+PT G V+L
Sbjct: 363 FKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVML 422
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFI 549
DG+DI+ L L+WLR IGLV+QEP LFATTI+ENI+ G+ DA EI AA+++ A SFI
Sbjct: 423 DGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFI 482
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
LP+GF+TQV ERG+QLSGGQKQRI+I+RA++KNP+ILLLDEATSALD+ESEK+VQEAL
Sbjct: 483 NNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEAL 542
Query: 610 DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEA 669
DR M+GRTT+V+AHRLST+R AD++AV+ G + E G+HDELI+ +G Y+ L+R+QEA
Sbjct: 543 DRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISN-PDGAYSSLLRIQEA 601
Query: 670 AHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYP 729
A N + + P S + PI SS +S D T
Sbjct: 602 ASP----NLNHTPSLPVSTKPLPELPITETTSSIHQSVNQP--------------DTT-- 641
Query: 730 SYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYN 789
K+ + RL M P+W Y L G++GS I GS FA ++ + YY
Sbjct: 642 ---------KQAKVTVGRLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYM 692
Query: 790 PDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIA 849
D E+ + L S ++ +T++H+ + I+GE LT RVR+KM +A+L+NEI
Sbjct: 693 -DWETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIG 751
Query: 850 WFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLI 909
WFD+ +N S+ +A+RL DA +R+ + DR ++++N L++ A F+L WRL LV++
Sbjct: 752 WFDKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVL 811
Query: 910 AVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSS 969
A +P++++ + +K+FM+G+ G++ A+ KA LAGE+I N+RTV AF +E ++ L+S
Sbjct: 812 ATYPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSK 871
Query: 970 NLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLM 1029
L P R F +GQ+AG YGV+QF +++SY L LWY S L++ G+S F ++ FMVL+
Sbjct: 872 ELLEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLI 931
Query: 1030 VSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVD 1089
V+A E L LAPD +KG + + SVF+LLDR+T++ D + + G +ELK V
Sbjct: 932 VTALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGDTGEEL---SNVEGTIELKGVH 988
Query: 1090 FSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149
FSYPSRPD+ IF D +L +GK++ALVG SG GKSSV++LV RFY+P++G +MIDG+DI
Sbjct: 989 FSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDI 1048
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209
+K LKSLRRH+ +V QEP LFA+TIYENI YG E A+ESE++EAA+LANA FISSLP+
Sbjct: 1049 KKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPE 1108
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
GY T VGERG+Q+SGGQ+QR+AIARA ++ EI+LLDEATSALD ESER VQ+ALDR
Sbjct: 1109 GYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMR 1168
Query: 1270 GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
+TT+VVAHRLSTI+N+ +I+VI DGK+ E GSH ++L N +G Y+++I LQ+
Sbjct: 1169 DRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSH-NILVENKNGPYSKLISLQQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1197 bits (3097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/1237 (49%), Positives = 850/1237 (68%), Gaps = 24/1237 (1%)
Query: 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEV 146
V L LF AD++DY LM +G LG +HG + P+F FF +++S G + + + V
Sbjct: 31 VSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSRV 90
Query: 147 LKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSD 206
+ A Y + +G S+W ++CWM TGERQ+ ++RI YL++ L +D+ +FDTE R S+
Sbjct: 91 SQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 150
Query: 207 VVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266
++ I++DA++VQDAI +K G+ + YL F+ GF +GF +VWQL L+TL VVPLIA+ G
Sbjct: 151 FIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 210
Query: 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326
+A ++ ++ KS+ A + AG + E+ + Q+R V+AFVGE KA+++YS++LK A +L +
Sbjct: 211 GYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSKR 270
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP 386
SG AKG+G+G TY ++FC++ALL WY LVRH TNG A T+ V+ G AL QA P
Sbjct: 271 SGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVP 330
Query: 387 SISAFAKAKVAAAKIFRII-DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRI 445
S+SA +K +VAAA IF++I ++ E+G L +V G IE V F+YPSRP + +
Sbjct: 331 SLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNM-V 389
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
N S T+ +GKT A VG SGSGKST++S+++RFY+P SG++LLDG+DIK+LKL+WLR+Q
Sbjct: 390 FENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQ 449
Query: 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565
+GLVSQEPALFATTI NILLG+ A++++I EAA+ ANA SFI LP+G++TQV E G
Sbjct: 450 MGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 509
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625
QLSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESEK+VQ+ALD M RTT+VIAHRL
Sbjct: 510 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRL 569
Query: 626 STIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARP 685
STIR D + VL+ G V E G+H ELI++G G YA L+ Q+ + L + S R
Sbjct: 570 STIRNVDKIVVLRDGQVRETGSHSELISRG--GDYATLVNCQDTEPQENLRSVMYESCR- 626
Query: 686 SSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSF 745
S G R S TS F + T + E L +S
Sbjct: 627 ---------------SQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLI--SSSSMI 669
Query: 746 WRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805
W L K+N+PEW+YAL+GS+G+V+ GS A F+ L+ +++ +Y+P + + RE+ K +
Sbjct: 670 WELIKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAII 729
Query: 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARL 865
+G LQH F+ ++GE LT RVR + +A+L NEI WFD +EN + + + L
Sbjct: 730 FVGAGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSIL 789
Query: 866 ALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMF 925
A DA VRSAI DR+ IVQN +L + A F WR+A V+ A FP+++AA++ +++F
Sbjct: 790 AADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLF 849
Query: 926 MKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIA 985
+KGF GD A+S+AT LA EAI N+RTVAAF++E I F+ L P + +G I+
Sbjct: 850 LKGFGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHIS 909
Query: 986 GSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 1045
G GYG++Q + SYALGLWY S L+K ++F +I+ FMVL+V+A AETL L PD
Sbjct: 910 GFGYGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDI 969
Query: 1046 IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLS 1105
+KG +A+ SVF +L R+TEI PD P++ V ++G++E ++V F+YP+RP+I IF++L+
Sbjct: 970 VKGTQALGSVFRVLHRETEIPPDQPNSRLVT-HIKGDIEFRNVSFAYPTRPEIAIFKNLN 1028
Query: 1106 LRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVP 1165
LR AGK+LA+VGPSG GKS+VI L+ RFY+PS+G + IDG DI+ NL+SLR+ +A+V
Sbjct: 1029 LRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQ 1088
Query: 1166 QEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225
QEP LF+++I+ENI YG+E+A+E+EIIEAA+ ANA +FIS + +GY T VG++GVQLSGG
Sbjct: 1089 QEPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGG 1148
Query: 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN 1285
QKQRVAIARA ++ ++LLDEATSALD +E+ VQEALD+ G+TTI+VAHRLSTIR
Sbjct: 1149 QKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRK 1208
Query: 1286 AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
A I V+ GKV E GSH L+ + DG Y ++ LQ
Sbjct: 1209 ADTIVVLHKGKVVEKGSHRELVSKS-DGFYKKLTSLQ 1244
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/1240 (45%), Positives = 822/1240 (66%), Gaps = 21/1240 (1%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAF 151
+F AD+ D LM +G LGA G S P+ L + + N GS + + + +V A
Sbjct: 23 VFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADIVKEFSSKVNVNAR 82
Query: 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEV-RTSDVVYA 210
+ + AA W ++ E CW T ERQ+ +MR +YL A L QDV+YFD + T++V+ +
Sbjct: 83 NLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGSTAEVITS 142
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
++ D+++VQD +SEK+ NF+ A F +AVGF+ +W+L LV L V L+ + G ++
Sbjct: 143 VSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIPGFMYGR 202
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
L LA + +E ++ G I EQ V R V++FV E + +S+AL+ + RLG K G A
Sbjct: 203 ILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLGLKQGLA 262
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISA 390
KG+ +G+ + F +A +WYG LV +H GG A A+++GGLAL ++
Sbjct: 263 KGIAVGSNG-ITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLSNVKY 321
Query: 391 FAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
F++A AA +I +I P ID S++G EL +V+G +E ++V+F YPSRPE I +F+
Sbjct: 322 FSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIFVSFN 381
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L VPAG+T+ALVG SGSGKSTV++L+ERFYDP++G+V++DG DI+ L+L+WLR Q+GLVS
Sbjct: 382 LRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGLVS 441
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEPALFAT+I+ENIL G+ +A E+ AA+ ANA++FI +LP G+DTQV ERGVQ+SGG
Sbjct: 442 QEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQMSGG 501
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARA+LK+P ILLLDEATSALD+ESE++VQEALD +GRTT+VIAHRLSTIR
Sbjct: 502 QKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTIRN 561
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARN 690
AD++AV+Q G V E+G HDELIA +NG+Y+ L+R+Q+ ++ + + S+
Sbjct: 562 ADIIAVMQSGEVKELGPHDELIAN-DNGLYSSLVRLQQTRDSNEIDEIGVTGS-TSAVGQ 619
Query: 691 SVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAK 750
S S + R S+ RS +R L D D + PS+R RL
Sbjct: 620 SSSHSMSRRFSAASRSSSARSLGDARDDDNTEKPKLPVPSFR--------------RLLM 665
Query: 751 MNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLS 810
+N+PEW AL+GS +V+ G + +AY + +++SVY+ DHA + + Y + +GL+
Sbjct: 666 LNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLA 725
Query: 811 SAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDAN 870
L N QH + +GE LTKR+RE+MLA +L EI WFD++EN S I ++LA DAN
Sbjct: 726 VLSFLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDAN 785
Query: 871 NVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFS 930
VRS +GDR+ +++Q + +L+ACT G V+ WRLALV+IAV P+++ +++ +K S
Sbjct: 786 VVRSLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMS 845
Query: 931 GDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYG 990
A +++++LA EA+ N+RT+ AF+S+ I+ LF + P + + AG G G
Sbjct: 846 KKSIHAQAESSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLG 905
Query: 991 VAQFCLYASYALGLWYSSWLV-KHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGG 1049
+ + ++AL WY L+ +H IS + + FM+L+ + A+ ++ D KG
Sbjct: 906 TSMSLMTCTWALDFWYGGRLMAEHHISA-KELFQTFMILVSTGRVIADAGSMTTDLAKGA 964
Query: 1050 RAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109
A+ SVF +LDR+TEI+PD+P P++L+GEV+++ VDF+YPSRPD+ IF+ +L +
Sbjct: 965 DAVASVFAVLDRETEIDPDNPQGYK-PEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQ 1023
Query: 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC 1169
GK+ ALVG SG GKS++I L++RFY+P G V IDG+DI+ YNL++LRRH+ +V QEP
Sbjct: 1024 PGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPT 1083
Query: 1170 LFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229
LFA TI ENI YG E+A+E+EI +AAR ANA FIS+L DGY T+ GERGVQLSGGQKQR
Sbjct: 1084 LFAGTIRENIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQR 1143
Query: 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVI 1289
+AIARA ++ I+LLDEATSALD++SE+ VQEALDR G+T++VVAHRLSTI+N +I
Sbjct: 1144 IAIARAILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLI 1203
Query: 1290 AVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 1329
V++ G V E G+H+ L+ G Y ++ LQ+ + QV
Sbjct: 1204 TVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQGGNQQV 1243
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1235 (43%), Positives = 792/1235 (64%), Gaps = 26/1235 (2%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAF 151
+F AD +D++LMA+G +GA G PI + L+N+ G + + + MQ V K A
Sbjct: 11 IFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGGSSFDDETFMQTVAKNAV 70
Query: 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEV-RTSDVVYA 210
+ V A W + E CW TGERQ+ KMR KYL+A L QDV YFD V TSDV+ +
Sbjct: 71 ALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTSTSDVITS 130
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
+++D++++QD +SEKL NF+ + FV + VGF +W+L +V + L+ + G ++
Sbjct: 131 VSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLLIPGLMYGR 190
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+L +++ K +E ++AG+I EQ + +R V+AF E K ++ +S+AL+ + +LG + G A
Sbjct: 191 ALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVKLGLRQGLA 250
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISA 390
KG+ +G+ + + + L WYG +V +H + GG + + V GG +L Q+ ++
Sbjct: 251 KGIAIGSNG-ITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSLSNLKY 309
Query: 391 FAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
F++A V +I ++I+ P ID ++ G L+ G +E HV F+YPSRPE I ++
Sbjct: 310 FSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPIFDDLC 369
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L VP+GKT+ALVG SGSGKSTV+SL++RFYDP +G++L+DG I L+++WLR Q+GLVS
Sbjct: 370 LRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGLVS 429
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEP LFAT+IKENIL G+ DA ++E+ EAA+ +NA+SFI + P+ + TQV ERGVQLSGG
Sbjct: 430 QEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLSGG 489
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARA++K+P ILLLDEATSALDSESE++VQEALD IGRTT+VIAHRLSTIR
Sbjct: 490 QKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTIRN 549
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARN 690
ADV+ V+ G + E G+H+EL+ K +G Y L+R+Q+ + K S S
Sbjct: 550 ADVICVVHNGRIIETGSHEELLEK-LDGQYTSLVRLQQVDN--------KESDHISVEEG 600
Query: 691 SVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAK 750
SS ++++ Y + S DF P+ + K SF RL
Sbjct: 601 QASS--LSKDLKYSPKEFIHSTSSNIVRDF--------PNLSPKD--GKSLVPSFKRLMS 648
Query: 751 MNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLS 810
MN PEW +AL G +G+ + G++ ++Y +++SVY+ H + + Y L +GL+
Sbjct: 649 MNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLA 708
Query: 811 SAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDAN 870
L N QH + +GE LTKR+RE+ML +L E+ WFD++EN S I +RLA DAN
Sbjct: 709 LFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDAN 768
Query: 871 NVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFS 930
VRS +GDR+ ++VQ + + + C G V+ WR ++V+++V PV+V Q++ +K S
Sbjct: 769 MVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMS 828
Query: 931 GDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYG 990
+ ++++LA EA+ N+RT+ AF+S+ I+ L + P + + +AG G
Sbjct: 829 RNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLG 888
Query: 991 VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGR 1050
+Q + AL WY L+ G + + +F++ + AE T+ D +KG
Sbjct: 889 TSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSD 948
Query: 1051 AMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARA 1110
A+ SVF +LDR T IEP++PD VP +++G++ +VDF+YP+RPD+ IF++ S+
Sbjct: 949 AVASVFAVLDRNTTIEPENPDGY-VPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIED 1007
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCL 1170
GK+ A+VGPSG GKS++I+L++RFY+P G V IDG+DIR +L+SLR+H+A+V QEP L
Sbjct: 1008 GKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTL 1067
Query: 1171 FASTIYENIAYGHES--ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228
FA TI ENI YG S ESEIIEAA+ ANA FI+SL +GY T G+RGVQLSGGQKQ
Sbjct: 1068 FAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQKQ 1127
Query: 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHV 1288
R+AIARA ++ ++LLDEATSALD++SE VQ+AL+R G+T++V+AHRLSTI+
Sbjct: 1128 RIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDT 1187
Query: 1289 IAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
IAV+++G V E G+HS LL P G Y ++ LQR
Sbjct: 1188 IAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQR 1222
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/1250 (44%), Positives = 799/1250 (63%), Gaps = 55/1250 (4%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAF 151
+F AD +D++LM +G +GA G + P+ L + L+N+ G + N D MQ + K +
Sbjct: 23 IFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIGGSSFNTDTFMQSISKNSV 82
Query: 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVR-TSDVVYA 210
L V W + E CW TGERQ+ +MR KYL A L QDV YFD V TSDV+ +
Sbjct: 83 ALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQDVGYFDLHVTSTSDVITS 142
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
+++D+ ++QD +SEKL NF+ +TFV + VGF +W+LA+V L + L+ + G ++
Sbjct: 143 VSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAIVGLPFIVLLVIPGLMYGR 202
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+L ++ K +E ++AG + EQ + +R V+AF GE K + +S+AL+ + +LG K G A
Sbjct: 203 ALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISKFSTALQGSVKLGIKQGLA 262
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISA 390
KG+ +G+ + F + + WYG +V +H GG A A+ IGG++L ++
Sbjct: 263 KGITIGSNG-ITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAAIAIGGVSLGGGLSNLKY 321
Query: 391 FAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
F +A +I +I+ P ID ++ G +L+ + G +E K+V F YPSR E I ++F
Sbjct: 322 FFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNVKFVYPSRLETSIFDDFC 381
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L VP+GKT+ALVG SGSGKSTV+SL++RFYDP +G++L+DG I L+++WLR Q+GLVS
Sbjct: 382 LRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVSIDKLQVKWLRSQMGLVS 441
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEPALFATTIKENIL G+ DA ++++ EAA+ +NA++FI +LP+G++TQV ERGVQ+SGG
Sbjct: 442 QEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLPNGYETQVGERGVQMSGG 501
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARA++K+P ILLLDEATSALDSESE++VQEAL+ IGRTT++IAHRLSTIR
Sbjct: 502 QKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENASIGRTTILIAHRLSTIRN 561
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETA---------------- 674
ADV++V++ G + E G+HDEL+ + +G Y+ L+ +Q+ +
Sbjct: 562 ADVISVVKNGHIVETGSHDELM-ENIDGQYSTLVHLQQIEKQDINVSVKIGPISDPSKDI 620
Query: 675 LNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHE 734
N++R S+ SS+ NSV+ P +N S P
Sbjct: 621 RNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKP--------------------------- 653
Query: 735 KLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAY 794
Q SF RL MN PEW AL G + + + G++ +AY L +++SVY+ H
Sbjct: 654 ------QLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDE 707
Query: 795 MIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQE 854
+ + Y +GL+ L N QH + +GE LTKR+RE+ML+ VL E+ WFD++
Sbjct: 708 IKEKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRD 767
Query: 855 ENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPV 914
EN S I +RLA DAN VRS +GDR+ ++VQ + + +A T G V+ WRLALV+IAV PV
Sbjct: 768 ENSSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPV 827
Query: 915 VVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTP 974
++ +++ +K S A ++++LA EA+ NVRT+ AF+S+ I+ + ++P
Sbjct: 828 IIVCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESP 887
Query: 975 LRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANG 1034
R + AG G ++Q ++AL WY L++ G FM+L+ +
Sbjct: 888 RRESIRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRV 947
Query: 1035 AAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPS 1094
A+ ++ D KG A+ SVF +LDR T I+P+DPD +R+ G+VE VDFSYP+
Sbjct: 948 IADAGSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYET-ERITGQVEFLDVDFSYPT 1006
Query: 1095 RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154
RPD+ IF++ S++ GK+ A+VGPSG GKS++I L++RFY+P G V IDG+DIR Y+L
Sbjct: 1007 RPDVIIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHL 1066
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYG--HESATESEIIEAARLANADKFISSLPDGYK 1212
+SLRRH+A+V QEP LFA TI ENI YG + E+EIIEAA+ ANA FI+SL +GY
Sbjct: 1067 RSLRRHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYD 1126
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKT 1272
T+ G+RGVQLSGGQKQR+AIARA ++ ++LLDEATSALD++SER VQ+AL+R G+T
Sbjct: 1127 TYCGDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRT 1186
Query: 1273 TIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
++V+AHRLSTI+N IAV+D GK+ E G+HS LL P G Y ++ LQ
Sbjct: 1187 SVVIAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/1240 (45%), Positives = 797/1240 (64%), Gaps = 19/1240 (1%)
Query: 91 ELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYA 150
+LF FADS D +LM GS+GA +G S P F DL++SFG N NN D ++ V K
Sbjct: 45 KLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKD-IVDVVSKVC 103
Query: 151 FYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA 210
F+ +G +++ +++CWM TGERQ+ ++R YL+ L QD+ +FD E T +VV
Sbjct: 104 LKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEVVGR 163
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
++ D V++QDA+ EK+G FI ++TFV GF + F W L LV L +PL+A+ GA A
Sbjct: 164 MSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMAL 223
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+ + + + Q A ++A +VEQT+ IR V +F GE +A+ +Y + A + + GF+
Sbjct: 224 IVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGFS 283
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISA 390
G+GLG +FV F SYAL +W+GG ++ GG I + V+ G ++L Q +P ++A
Sbjct: 284 TGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVTA 343
Query: 391 FAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
FA + AA K+F I KP ID +G L+ + G IELK V FSYP+RP+ I + FS
Sbjct: 344 FAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGFS 403
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L +P+G T ALVG SGSGKSTV+SLIERFYDP SG VL+DG ++K +L+W+R +IGLVS
Sbjct: 404 LFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVS 463
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEP LF+++I ENI G+ +A + EI+ A +ANA FI KLP G DT V E G QLSGG
Sbjct: 464 QEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGG 523
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARA+LK+P ILLLDEATSALD+ESE++VQEALDR M+ RTT+++AHRLST+R
Sbjct: 524 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRN 583
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSS--ARPSSA 688
AD++AV+ +G + E G+H EL+ K G Y++LIR+QE +N K+S + SS
Sbjct: 584 ADMIAVIHRGKMVEKGSHSELL-KDSEGAYSQLIRLQE------INKDVKTSELSSGSSF 636
Query: 689 RNSVSSPIIARNSSYGRSPYSRRLSDFS-TSDFSLSLDATYPSYRHEKLAFKEQAS--SF 745
RNS + SS G S L+ T+ L + A +E S
Sbjct: 637 RNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPLPKVSL 696
Query: 746 WRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805
R+A +N PE L+G+V + I G++ F ++S ++ ++ P H + R+ + +
Sbjct: 697 TRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHE-LKRDSRFWAII 755
Query: 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARL 865
+ L L+ + Q + + G L +R+R + E+AWFD+ +N S + ARL
Sbjct: 756 FVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTMGARL 815
Query: 866 ALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMF 925
+ DA +R+ +GD + + VQN A F W LAL+++ + P++ +Q F
Sbjct: 816 SADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFVQVKF 875
Query: 926 MKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIA 985
MKGFS D ++ + +A+Q+A +A+G++RTVA+F +E ++ ++ + P++ +G I+
Sbjct: 876 MKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGIKQGFIS 935
Query: 986 GSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 1045
G G+G + F L+ YA + + LV+ G + F+ +VF L ++A G +++ T APD
Sbjct: 936 GLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSSTFAPDS 995
Query: 1046 IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLS 1105
K A S+F ++DRK++I+ D T V + ++G++EL+H+ F+YP+RPDI IFRDL
Sbjct: 996 SKAKVAAASIFAIIDRKSKIDSSDETGT-VLENVKGDIELRHLSFTYPARPDIQIFRDLC 1054
Query: 1106 LRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVP 1165
L RAGKT+ALVG SG GKS+VI+L+QRFY+P SG + +DG +++K LK LR+ M +V
Sbjct: 1055 LTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLRQQMGLVG 1114
Query: 1166 QEPCLFASTIYENIAYG---HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222
QEP LF TI NIAYG E+ATESEII AA LANA KFISS+ GY T VGERG+QL
Sbjct: 1115 QEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGERGIQL 1174
Query: 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLST 1282
SGGQKQRVAIARA V++ +I+LLDEATSALDAESER VQ+ALDR +TTIVVAHRLST
Sbjct: 1175 SGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLST 1234
Query: 1283 IRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
I+NA VIAV+ +G +AE G+H L+K G YA ++QL
Sbjct: 1235 IKNADVIAVVKNGVIAEKGTHETLIKIE-GGVYASLVQLH 1273
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1350 | ||||||
| 255556910 | 1352 | multidrug resistance protein 1, 2, putat | 0.994 | 0.993 | 0.873 | 0.0 | |
| 224140225 | 1324 | multidrug/pheromone exporter, MDR family | 0.980 | 1.0 | 0.884 | 0.0 | |
| 225441205 | 1354 | PREDICTED: ABC transporter B family memb | 0.997 | 0.994 | 0.854 | 0.0 | |
| 356572466 | 1339 | PREDICTED: ABC transporter B family memb | 0.988 | 0.996 | 0.859 | 0.0 | |
| 356503728 | 1342 | PREDICTED: ABC transporter B family memb | 0.988 | 0.994 | 0.854 | 0.0 | |
| 356533187 | 1343 | PREDICTED: ABC transporter B family memb | 0.988 | 0.993 | 0.851 | 0.0 | |
| 449440133 | 1361 | PREDICTED: ABC transporter B family memb | 0.997 | 0.988 | 0.843 | 0.0 | |
| 356572468 | 1324 | PREDICTED: ABC transporter B family memb | 0.977 | 0.996 | 0.847 | 0.0 | |
| 356545993 | 1341 | PREDICTED: ABC transporter B family memb | 0.988 | 0.994 | 0.84 | 0.0 | |
| 4204793 | 1313 | P-glycoprotein [Solanum tuberosum] | 0.971 | 0.999 | 0.837 | 0.0 |
| >gi|255556910|ref|XP_002519488.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223541351|gb|EEF42902.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2429 bits (6295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1187/1359 (87%), Positives = 1270/1359 (93%), Gaps = 16/1359 (1%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSSPP--------FNNHNNSNNNYA-NPSPQAQ 51
MSQ+S +EIK IEQW+WSEMQGLELVSS P F ++ SN++Y+ + Q Q
Sbjct: 1 MSQES---EEIKTIEQWKWSEMQGLELVSSAPSNPSSSDPFKTNSTSNSHYSISQQQQEQ 57
Query: 52 AQETTTTTKRQMENNSSSSSSAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGA 111
+ T + M+NN S N +K DV VG ELFRFADSLDYVLMAIGS+GA
Sbjct: 58 NHQDTVPETKDMDNNKKDS----NGSGEKQGDVATVGFCELFRFADSLDYVLMAIGSIGA 113
Query: 112 FVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCW 171
VHG S P+FLRFFADLVNSFGSN N+MDKMMQEVLKYAFYFL+VGAAIWASSWAEISCW
Sbjct: 114 LVHGSSLPLFLRFFADLVNSFGSNANDMDKMMQEVLKYAFYFLIVGAAIWASSWAEISCW 173
Query: 172 MWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIH 231
MWTGERQS KMRIKYLEAALNQD+QYFDTEVRTSDVV+AIN+DAV+VQDAISEKLGNF+H
Sbjct: 174 MWTGERQSTKMRIKYLEAALNQDIQYFDTEVRTSDVVFAINSDAVMVQDAISEKLGNFLH 233
Query: 232 YLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVE 291
Y+ATFV+GF VGF+AVWQLALVTLAVVPLIAVI AIH +LAKL+GKSQEALSQAGNIVE
Sbjct: 234 YMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIAAIHTNTLAKLSGKSQEALSQAGNIVE 293
Query: 292 QTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLW 351
QT+VQIRVV AFVGES+ALQ YSSAL+VAQR+GYKSGFAKGMGLGATYFVVFC YALLLW
Sbjct: 294 QTIVQIRVVMAFVGESRALQGYSSALRVAQRIGYKSGFAKGMGLGATYFVVFCCYALLLW 353
Query: 352 YGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSI 411
YGG+LVRHH+TNGGLAIATMFAVMIGGLAL Q+APS+ AFAKAK AAAKIFRIIDHKP++
Sbjct: 354 YGGFLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMGAFAKAKAAAAKIFRIIDHKPAV 413
Query: 412 DRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKST 471
DRNSESGL+LDSV+GL+ELK+VDFSYPSRP+V+ILNNF+L VPAGKTIALVGSSGSGKST
Sbjct: 414 DRNSESGLKLDSVTGLVELKNVDFSYPSRPDVKILNNFTLNVPAGKTIALVGSSGSGKST 473
Query: 472 VVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA 531
VVSLIERFYDP SGQVLLDGHDIK+L LRWLRQQIGLVSQEPALFATTIKENILLGRPDA
Sbjct: 474 VVSLIERFYDPNSGQVLLDGHDIKTLDLRWLRQQIGLVSQEPALFATTIKENILLGRPDA 533
Query: 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
D EIEEAARVANA+SFI KLP+GFDTQV ERG+QLSGGQKQRIAIARAMLKNPAILLLD
Sbjct: 534 DQIEIEEAARVANAHSFIAKLPEGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLD 593
Query: 592 EATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
EATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD+VAVLQQGSV+EIGTHDEL
Sbjct: 594 EATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDEL 653
Query: 652 IAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRR 711
IAKG+NGVYAKLIRMQE AHETA+NNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRR
Sbjct: 654 IAKGDNGVYAKLIRMQETAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRR 713
Query: 712 LSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGS 771
LSDFSTSDFSLSLDAT+P+YR EKL FKEQASSFWRLAKMNSPEWVYALVGS+GSV+CGS
Sbjct: 714 LSDFSTSDFSLSLDATHPNYRLEKLPFKEQASSFWRLAKMNSPEWVYALVGSIGSVVCGS 773
Query: 772 LNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENL 831
L+AFFAYVLSA++SVYYNP+HAYM REIAKYCYLLIGLSSA L+FNTLQHSFWDIVGENL
Sbjct: 774 LSAFFAYVLSAVLSVYYNPNHAYMSREIAKYCYLLIGLSSAALIFNTLQHSFWDIVGENL 833
Query: 832 TKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALML 891
TKRVREKMLAAVLKNE+AWFDQEENESARIA RLALDANNVRSAIGDRI VIVQNTALML
Sbjct: 834 TKRVREKMLAAVLKNEMAWFDQEENESARIAGRLALDANNVRSAIGDRISVIVQNTALML 893
Query: 892 VACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNV 951
VACTAGFVLQWRLALVLIAVFP+VVAATVLQKMFM GFSGD+E+AH+KATQLAGEAI NV
Sbjct: 894 VACTAGFVLQWRLALVLIAVFPLVVAATVLQKMFMTGFSGDLESAHAKATQLAGEAIANV 953
Query: 952 RTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLV 1011
RTVAAFNSE IVGLF++NLQ PLRRCFWKGQIAGSG+G+AQF LYASYALGLWY+SWLV
Sbjct: 954 RTVAAFNSESQIVGLFATNLQAPLRRCFWKGQIAGSGFGIAQFSLYASYALGLWYASWLV 1013
Query: 1012 KHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPD 1071
KH ISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDD D
Sbjct: 1014 KHEISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDAD 1073
Query: 1072 ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131
AT VPDRLRGEVELKHVDFSYP+RPD+PIFRDL+LRARAGKTLALVGPSGCGKSSVIALV
Sbjct: 1074 ATAVPDRLRGEVELKHVDFSYPTRPDVPIFRDLNLRARAGKTLALVGPSGCGKSSVIALV 1133
Query: 1132 QRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEI 1191
QRFYEPSSGRVMIDGKDIRKYNLKSLR+H+AIVPQEPCLFA+TIYENIAYGHESATE+EI
Sbjct: 1134 QRFYEPSSGRVMIDGKDIRKYNLKSLRKHIAIVPQEPCLFATTIYENIAYGHESATEAEI 1193
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
IEAA LANA KFIS LPDGYKTFVGERGVQLSGGQKQR+AIARA VRKAE+MLLDEATSA
Sbjct: 1194 IEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAIARALVRKAELMLLDEATSA 1253
Query: 1252 LDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNP 1311
LDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE GSH+HLLKN P
Sbjct: 1254 LDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHTHLLKNYP 1313
Query: 1312 DGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEEREA 1350
DGCYARMIQLQRFTHSQVIGMTSGSSSSARP++DEEREA
Sbjct: 1314 DGCYARMIQLQRFTHSQVIGMTSGSSSSARPREDEEREA 1352
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140225|ref|XP_002323485.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222868115|gb|EEF05246.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2396 bits (6210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1176/1329 (88%), Positives = 1247/1329 (93%), Gaps = 5/1329 (0%)
Query: 22 MQGLELVSSPPFNNHNNSNNNYANPSPQAQAQETTTTTKRQMENNSSSSSSAANSEPKKP 81
MQGLELV + N+ + + + E+T K +SSSS +KP
Sbjct: 1 MQGLELVLTLNTNSTDQLQQQQQQSVVERREMESTEPKK-----GGTSSSSGGGGNGEKP 55
Query: 82 SDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDK 141
DV VG GELFRFAD LDYVLM IGS+GAFVHGCS P+FLRFFADLVNSFGSN NNMDK
Sbjct: 56 GDVAVVGFGELFRFADGLDYVLMGIGSMGAFVHGCSLPLFLRFFADLVNSFGSNANNMDK 115
Query: 142 MMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTE 201
MMQEVLKYAFYFL+VGAAIWASSWAEISCWMWTGERQS KMRIKYLEAALNQD+QYFDTE
Sbjct: 116 MMQEVLKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQYFDTE 175
Query: 202 VRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLI 261
VRTSDVV AINTDAV+VQDAISEKLGNFIHY+ATFV+GF VGF+AVWQLALVTLAVVPLI
Sbjct: 176 VRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLI 235
Query: 262 AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQ 321
AVIGAIH T+LAKL+GKSQEALSQAGNIVEQT+VQIRVV AFVGES+ALQAYSSALKVAQ
Sbjct: 236 AVIGAIHTTTLAKLSGKSQEALSQAGNIVEQTIVQIRVVLAFVGESRALQAYSSALKVAQ 295
Query: 322 RLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLAL 381
R+GYKSGF+KGMGLGATYFVVFC YALLLWYGGYLVRH +TNGGLAIATMFAVMIGGL +
Sbjct: 296 RIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHRYTNGGLAIATMFAVMIGGLGI 355
Query: 382 AQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRP 441
QA PS+ AFAKAKVAAAKIFRIIDHKP+IDRNSESG+EL++V+GL+EL ++DF+YPSRP
Sbjct: 356 GQAIPSMGAFAKAKVAAAKIFRIIDHKPAIDRNSESGIELEAVTGLVELNNIDFAYPSRP 415
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+VRILNNFSL VPAGKTIALVGSSGSGKSTVVSLIERFYDP SGQVLLDGHDIK+LKLRW
Sbjct: 416 DVRILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGHDIKTLKLRW 475
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVR 561
LRQQIGLVSQEPALFATTIKENILLGRPDAD EIEEAARVANA+SFIIKLPDGFDTQV
Sbjct: 476 LRQQIGLVSQEPALFATTIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVG 535
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI 621
ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI
Sbjct: 536 ERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI 595
Query: 622 AHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKS 681
AHRLSTIRKAD+VAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQE AHETALNNARKS
Sbjct: 596 AHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKS 655
Query: 682 SARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQ 741
SARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDA++P+YR EKLAFKEQ
Sbjct: 656 SARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASFPNYRLEKLAFKEQ 715
Query: 742 ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAK 801
ASSFWRLAKMNSPEWVYALVGS+GSVICGSL+AFFAYVLSA++S+YYNP+HAYM REIAK
Sbjct: 716 ASSFWRLAKMNSPEWVYALVGSIGSVICGSLSAFFAYVLSAVLSIYYNPNHAYMSREIAK 775
Query: 802 YCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARI 861
YCYLLIGLSSA L+FNTLQHSFWDIVGENLTKRVREKML AVLKNE+AWFDQEENESARI
Sbjct: 776 YCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARI 835
Query: 862 AARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVL 921
AARLALDANNVRSAIGDRI VIVQNTALMLVACTAGFVLQWRLALVLIAVFP+VVAATVL
Sbjct: 836 AARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPLVVAATVL 895
Query: 922 QKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWK 981
QKMFM GFSGD+EAAHSKATQLAGEAI NVRTVAAFNSE IVGLFSSNL+TPLRRCFWK
Sbjct: 896 QKMFMNGFSGDLEAAHSKATQLAGEAIANVRTVAAFNSEAKIVGLFSSNLETPLRRCFWK 955
Query: 982 GQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL 1041
GQIAGSG+G+AQF LYASYALGLWY+SWLVKHGISDFS TIRVFMVLMVSANGAAETLTL
Sbjct: 956 GQIAGSGFGIAQFSLYASYALGLWYASWLVKHGISDFSNTIRVFMVLMVSANGAAETLTL 1015
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYP+RPD+PIF
Sbjct: 1016 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDVPIF 1075
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
RDL+LRARAGK LALVGPSGCGKSSVIAL+QRFYEPSSGRVMIDGKDIRKYNLKSLR+H+
Sbjct: 1076 RDLNLRARAGKILALVGPSGCGKSSVIALIQRFYEPSSGRVMIDGKDIRKYNLKSLRKHI 1135
Query: 1162 AIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
A+V QEPCLFA+TIYENIAYG+ESATE+EIIEAA LANADKFISSLPDGYKTFVGERGVQ
Sbjct: 1136 AVVSQEPCLFATTIYENIAYGNESATEAEIIEAATLANADKFISSLPDGYKTFVGERGVQ 1195
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQKQRVAIARA +RKAE+MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS
Sbjct: 1196 LSGGQKQRVAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1255
Query: 1282 TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 1341
TIRNA+VIAVIDDGKVAE GSHSHLLKN PDG YARMIQLQRFTHSQV+GMTSGSSSS R
Sbjct: 1256 TIRNANVIAVIDDGKVAEQGSHSHLLKNYPDGSYARMIQLQRFTHSQVVGMTSGSSSSTR 1315
Query: 1342 PKDDEEREA 1350
PKDD E+E
Sbjct: 1316 PKDDGEKEG 1324
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441205|ref|XP_002266505.1| PREDICTED: ABC transporter B family member 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2390 bits (6193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1160/1357 (85%), Positives = 1255/1357 (92%), Gaps = 10/1357 (0%)
Query: 1 MSQDSSHQQEIKK-IEQWRWSEMQGLELVS--SPPFNNHNNSNNNYANPSPQAQAQETTT 57
MSQ++ EIK IEQWRWSEMQGLELVS + F +H ++ + + +A++
Sbjct: 1 MSQEAV---EIKTTIEQWRWSEMQGLELVSPNTDDFKSHPTASRVSKSSAEGGEARDMDG 57
Query: 58 TTKRQMENNSSSSSSA----ANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFV 113
T + + A+ +K V G GELFRFAD LDYVLM IGS+GA V
Sbjct: 58 TEPKNQPQPQPQPQAQAQAHASGSGEKTELVPSSGFGELFRFADGLDYVLMTIGSIGAIV 117
Query: 114 HGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMW 173
HG S PIFLRFFADLVNSFGSN NN+DKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMW
Sbjct: 118 HGSSLPIFLRFFADLVNSFGSNANNIDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMW 177
Query: 174 TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYL 233
TGERQS KMRIKYLEAALNQD+Q+FDTEVRTSDVV+A+NTDAV+VQDAISEKLGNFIHY+
Sbjct: 178 TGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAVNTDAVMVQDAISEKLGNFIHYM 237
Query: 234 ATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQT 293
ATFV+GF VGF+AVWQLALVTLAVVPLIAVIG IH +LAKL+ KSQEALS+AGNI EQT
Sbjct: 238 ATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLAKLSAKSQEALSEAGNIAEQT 297
Query: 294 VVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYG 353
+VQIRVVFAFVGES+ALQAYS+AL+++QRLGYKSGF+KGMGLGATYF VFC YALLLWYG
Sbjct: 298 IVQIRVVFAFVGESRALQAYSAALRISQRLGYKSGFSKGMGLGATYFTVFCCYALLLWYG 357
Query: 354 GYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDR 413
GYLVRHH+TNGGLAIATMF+VM+GGLAL Q+APS+SAFAKAKVAAAKIFRIIDHKP+I+R
Sbjct: 358 GYLVRHHYTNGGLAIATMFSVMLGGLALGQSAPSMSAFAKAKVAAAKIFRIIDHKPNIER 417
Query: 414 NSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVV 473
N E+GLEL+SV+G +ELK+VDFSYPSRPEVRIL++FSL VPAGKTIALVGSSGSGKSTVV
Sbjct: 418 NGETGLELESVTGQVELKNVDFSYPSRPEVRILSDFSLNVPAGKTIALVGSSGSGKSTVV 477
Query: 474 SLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADL 533
SLIERFYDPTSGQVLLDGHDIK+LKLRWLRQQIGLVSQEPALFATTIKEN+LLGRPDA L
Sbjct: 478 SLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENMLLGRPDATL 537
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
EIEEAARVANAYSFI+KLP+GFDTQV ERG QLSGGQKQRIAIARAMLKNPAILLLDEA
Sbjct: 538 VEIEEAARVANAYSFIVKLPEGFDTQVGERGFQLSGGQKQRIAIARAMLKNPAILLLDEA 597
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD+VAVLQQGSVSEIGTHDELIA
Sbjct: 598 TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIA 657
Query: 654 KGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLS 713
KGENGVYAKLIRMQE AHETAL+NARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLS
Sbjct: 658 KGENGVYAKLIRMQETAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLS 717
Query: 714 DFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLN 773
DFSTSDFSLSLDA++P+YR EKLAFKEQASSFWRLAKMNSPEWVYAL G++GSV+CGS++
Sbjct: 718 DFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWVYALFGTIGSVVCGSIS 777
Query: 774 AFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTK 833
AFFAYVLSA++SVYYN +HAYM ++I KYCYLLIG+SSA LLFNTLQH FWD+VGENLTK
Sbjct: 778 AFFAYVLSAVLSVYYNQNHAYMSKQIGKYCYLLIGVSSAALLFNTLQHFFWDVVGENLTK 837
Query: 834 RVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVA 893
RVREKMLAAVLKNE+AWFDQEENESARIAARLALDANNVRSAIGDRI VI+QN+ALMLVA
Sbjct: 838 RVREKMLAAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIMQNSALMLVA 897
Query: 894 CTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRT 953
CTAGFVLQWRLALVLIAVFPVVVAATVLQKMFM+GFSGD+E AH+KATQLAGEAI NVRT
Sbjct: 898 CTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEGAHAKATQLAGEAIANVRT 957
Query: 954 VAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKH 1013
VAAFNSE IVGLFS+NLQTPLRRCFWKGQIAGSGYG+AQF LYASYALGLWY+SWLVKH
Sbjct: 958 VAAFNSEAKIVGLFSTNLQTPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKH 1017
Query: 1014 GISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAT 1073
GISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDA
Sbjct: 1018 GISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAI 1077
Query: 1074 PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133
PV DRLRGEVELKHVDFSYPSRPD+P+FRDL LRARAGKTLALVGPSGCGKSSVIALVQR
Sbjct: 1078 PVTDRLRGEVELKHVDFSYPSRPDVPVFRDLCLRARAGKTLALVGPSGCGKSSVIALVQR 1137
Query: 1134 FYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIE 1193
FYEP+SGRVMIDGKDIRKYNLKSLRRH+AIVPQEPCLFA+TIYENIAYGHESATE+EIIE
Sbjct: 1138 FYEPTSGRVMIDGKDIRKYNLKSLRRHIAIVPQEPCLFATTIYENIAYGHESATEAEIIE 1197
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
AA LANA KF+S+LPDGYKTFVGERGVQLSGGQKQR+AIARAF+RKAE+MLLDEATSALD
Sbjct: 1198 AATLANAHKFVSALPDGYKTFVGERGVQLSGGQKQRIAIARAFLRKAELMLLDEATSALD 1257
Query: 1254 AESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313
AESER +QEAL+RACSGKTTIVVAHRLSTIRNAH IAVIDDGKVAE GSHSHLLKN PDG
Sbjct: 1258 AESERCIQEALERACSGKTTIVVAHRLSTIRNAHTIAVIDDGKVAEQGSHSHLLKNYPDG 1317
Query: 1314 CYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEEREA 1350
CYARMIQLQRFTH Q +GM SGSSSS RP+D+EERE
Sbjct: 1318 CYARMIQLQRFTHGQAVGMASGSSSSTRPRDEEEREG 1354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572466|ref|XP_003554389.1| PREDICTED: ABC transporter B family member 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2384 bits (6179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1158/1348 (85%), Positives = 1254/1348 (93%), Gaps = 14/1348 (1%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSSPPFNNHNNSNNNYANPSPQAQAQETTTTTK 60
MS+DS +EIK IEQW+WSEMQGLELV A PS +E T+
Sbjct: 1 MSKDS---EEIKTIEQWKWSEMQGLELVPE---------EGGAAAPSQHQVPREMNTSEP 48
Query: 61 RQMENNSSSSSSAANS--EPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSF 118
+ +SS++ +N E K+ V VG GELFRFAD LDYVLM IG++GA VHGCS
Sbjct: 49 PNKDVGASSAAVTSNGGGEKKEKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSL 108
Query: 119 PIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQ 178
P+FLRFFADLVNSFGSN N++DKM QEV+KYAFYFLVVGAAIWASSWAEISCWMW+GERQ
Sbjct: 109 PLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQ 168
Query: 179 SIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVT 238
S KMRIKYLEAALNQD+Q+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+ATFV+
Sbjct: 169 STKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVS 228
Query: 239 GFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIR 298
GF VGF+AVWQLALVTLAVVP+IAVIG IH T+LAKL+GKSQEALSQAGNIVEQT+ QIR
Sbjct: 229 GFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTIAQIR 288
Query: 299 VVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVR 358
VV AFVGES+ALQAYSSAL+VAQ++GYK+GFAKGMGLGATYFVVFC YALLLWYGGYLVR
Sbjct: 289 VVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVR 348
Query: 359 HHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESG 418
HH TNGGLAIATMFAVMIGGL L Q+APS++AF KA+VAAAKIFRIIDHKPSID+NSESG
Sbjct: 349 HHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDQNSESG 408
Query: 419 LELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
+ELD+V+GL+ELK+VDFSYPSRPEV+ILN+FSL VPAGKTIALVGSSGSGKSTVVSLIER
Sbjct: 409 VELDTVTGLVELKNVDFSYPSRPEVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIER 468
Query: 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEE 538
FYDPTSGQVLLDGHDIK+L+LRWLRQQIGLVSQEPALFATTI+ENILLGRPDAD EIEE
Sbjct: 469 FYDPTSGQVLLDGHDIKTLRLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEE 528
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
AARVANA+SFIIKLPDG++TQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALD
Sbjct: 529 AARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 588
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658
SESEKLVQEALDRFMIGRTTL+IAHRLSTIRKAD+VAVLQQGSVSEIGTHDEL +KGENG
Sbjct: 589 SESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENG 648
Query: 659 VYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTS 718
VYAKLI+MQE AHETA+NNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTS
Sbjct: 649 VYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTS 708
Query: 719 DFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAY 778
DFSLSLDA++PSYR EKLAFKEQASSFWRLAKMNSPEW+YAL+GS+GSV+CGSL+AFFAY
Sbjct: 709 DFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAY 768
Query: 779 VLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREK 838
VLSA++SVYYNPDH YMIREI KYCYLLIGLSS LLFNTLQH FWDIVGENLTKRVREK
Sbjct: 769 VLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREK 828
Query: 839 MLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGF 898
ML AVLKNE+AWFDQEENESARIAARLALDANNVRSAIGDRI VIVQNTALMLVACTAGF
Sbjct: 829 MLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGF 888
Query: 899 VLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFN 958
VLQWRLALVL+AVFPVVVAATVLQKMFM GFSGD+EAAH+KATQLAGEAI NVRTVAAFN
Sbjct: 889 VLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFN 948
Query: 959 SELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDF 1018
SE IVGLF++NLQ PL+RCFWKGQI+GSGYGVAQF LYASYALGLWY+SWLVKHGISDF
Sbjct: 949 SEKKIVGLFTTNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDF 1008
Query: 1019 SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDR 1078
SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDR+TEIEPDD DATPVPDR
Sbjct: 1009 SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDR 1068
Query: 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
LRGEVELKHVDFSYP+RPD+P+FRDLSLRA+AGKTLALVGPSGCGKSSVIAL+QRFY+P+
Sbjct: 1069 LRGEVELKHVDFSYPTRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPT 1128
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA 1198
SGRVMIDGKDIRKYNLKSLRRH+++VPQEPCLFA+TIYENIAYGHES TE+EIIEAA LA
Sbjct: 1129 SGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESTTEAEIIEAATLA 1188
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
NA KFIS LPDGYKTFVGERGVQLSGGQKQR+A+ARAFVRKAE+MLLDEATSALDAESER
Sbjct: 1189 NAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESER 1248
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
SVQEALDRA SGKTTI+VAHRLSTIRNA++IAVIDDGKVAE GSHS LLKN+PDG YARM
Sbjct: 1249 SVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARM 1308
Query: 1319 IQLQRFTHSQVIGMTSGSSSSARPKDDE 1346
IQLQRFTHSQVIGM SGSSSS RPKDDE
Sbjct: 1309 IQLQRFTHSQVIGMASGSSSSTRPKDDE 1336
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503728|ref|XP_003520656.1| PREDICTED: ABC transporter B family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2362 bits (6122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1154/1351 (85%), Positives = 1251/1351 (92%), Gaps = 17/1351 (1%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSSPPFNNHNNSNNNYANPSPQAQ-AQETTTTT 59
MS+DS +EIK IEQW+W+EMQGLELV A PS Q E T+
Sbjct: 1 MSKDS---EEIKTIEQWKWTEMQGLELVPE---------EGAAAAPSQHHQLPMEMNTSE 48
Query: 60 KRQMENNSSSSSSAANSE----PKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHG 115
+ +SSSSAA + K+ V VG GELFRFAD LDYVLM IG++GA VHG
Sbjct: 49 PPNKDVVGASSSSAAVTNGEKKEKEKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHG 108
Query: 116 CSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTG 175
CS P+FLRFFADLVNSFGSN N++DKM QEV+KYAFYFLVVGAAIWASSWAEISCWMW+G
Sbjct: 109 CSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSG 168
Query: 176 ERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLAT 235
ERQS MRIKYLEAALNQD+Q+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+AT
Sbjct: 169 ERQSTTMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMAT 228
Query: 236 FVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVV 295
FV+GF VGF+AVWQLALVTLAVVP+IAVIG IH +LAKL+GKSQEALSQAGNIVEQTV
Sbjct: 229 FVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLAKLSGKSQEALSQAGNIVEQTVA 288
Query: 296 QIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGY 355
QIRVV AFVGES+ALQ+YSSAL++AQ++GYK+GFAKGMGLGATYFVVFC YALLLWYGGY
Sbjct: 289 QIRVVLAFVGESRALQSYSSALRIAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGY 348
Query: 356 LVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNS 415
LVRHH TNGGLAIATMFAVMIGGL L Q+APS++AF KA+VAAAKIFRIIDHKP+IDRNS
Sbjct: 349 LVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPNIDRNS 408
Query: 416 ESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSL 475
ESG+ELD+V+GL+ELK+VDFSYPSRPEV+ILN+FSL VPAGKTIALVGSSGSGKSTVVSL
Sbjct: 409 ESGIELDTVTGLVELKNVDFSYPSRPEVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSL 468
Query: 476 IERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNE 535
IERFYDPTSGQVLLDGHDIK+LKLRWLRQQIGLVSQEPALFATTI+ENILLGRPDAD E
Sbjct: 469 IERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVE 528
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
IEEAARVANA+SFIIKLPDG++TQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATS
Sbjct: 529 IEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATS 588
Query: 596 ALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKG 655
ALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD+VAVLQ GSVSEIGTHDEL +KG
Sbjct: 589 ALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQLGSVSEIGTHDELFSKG 648
Query: 656 ENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDF 715
ENGVYAKLI+MQE AHETA+NNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDF
Sbjct: 649 ENGVYAKLIKMQEMAHETAVNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDF 708
Query: 716 STSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAF 775
STSDFSLSLDA++PSYR EKLAFKEQASSFWRLAKMNSPEW+YAL+GS+GSV+CGSL+AF
Sbjct: 709 STSDFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAF 768
Query: 776 FAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRV 835
FAYVLSA++SVYYNPDH YMIREI KYCYLLIGLSS LLFNTLQH FWDIVGENLTKRV
Sbjct: 769 FAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRV 828
Query: 836 REKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACT 895
REKML AVLKNE+AWFDQEENESARIAARLALDANNVRSAIGDRI VIVQNTALMLVACT
Sbjct: 829 REKMLMAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACT 888
Query: 896 AGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVA 955
AGFVLQWRLALVL+AVFPVVVAATVLQKMFM GFSGD+EAAH+KATQLAGEAI NVRTVA
Sbjct: 889 AGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVA 948
Query: 956 AFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGI 1015
AFNSE IVGLF++NLQ PL+RCFWKGQI+GSGYGVAQF LYASYALGLWY+SWLVKHGI
Sbjct: 949 AFNSETKIVGLFTTNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGI 1008
Query: 1016 SDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPV 1075
SDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGG+AMRSVF+LLDR+TEIEPDD DAT V
Sbjct: 1009 SDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRRTEIEPDDQDATLV 1068
Query: 1076 PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135
PDRLRGEVELKHVDFSYP+RPD+P+FRDLSLRARAGKTLALVGPSGCGKSS+IAL+QRFY
Sbjct: 1069 PDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSIIALIQRFY 1128
Query: 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAA 1195
+P+SGRVMIDGKDIRKYNLKSLRRH+++VPQEPCLFA+TIYENIAYGHESATE+EIIEAA
Sbjct: 1129 DPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAA 1188
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
LANA KFIS LPDGYKTFVGERGVQLSGGQKQR+A+ARAF+RKAE+MLLDEATSALDAE
Sbjct: 1189 TLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAE 1248
Query: 1256 SERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315
SERSVQEALDRA SGKTTI+VAHRLST+RNA++IAVIDDGKVAE GSHS LLKN+PDG Y
Sbjct: 1249 SERSVQEALDRASSGKTTIIVAHRLSTVRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIY 1308
Query: 1316 ARMIQLQRFTHSQVIGMTSGSSSSARPKDDE 1346
ARMIQLQRFTHSQVIGM SGSSSS RPKDDE
Sbjct: 1309 ARMIQLQRFTHSQVIGMASGSSSSTRPKDDE 1339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533187|ref|XP_003535149.1| PREDICTED: ABC transporter B family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2360 bits (6116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1352 (85%), Positives = 1263/1352 (93%), Gaps = 18/1352 (1%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSSPPFNNHNNSNNNYANPSPQAQAQETTTTTK 60
MSQ+S +EIK +EQWRWSEMQG+ELVSS + SN++ +NP+ + + +E
Sbjct: 1 MSQNS---EEIKTLEQWRWSEMQGIELVSS----SATVSNSHESNPALEKKREERVI--- 50
Query: 61 RQMENNSSSSS------SAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVH 114
ME SS + + E KK V VG GELFRF+D LDY+LMAIG++GAFVH
Sbjct: 51 --MEEVSSVAKKEEGVPNGVGGEKKKDGSVASVGFGELFRFSDGLDYILMAIGTVGAFVH 108
Query: 115 GCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWT 174
GCS P+FLRFFADLVNSFGSN N++DKM QEV+KYAFYFLVVGAAIWASSWAEISCWMWT
Sbjct: 109 GCSLPLFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWT 168
Query: 175 GERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLA 234
GERQS +MRI+YLEAAL+QD+Q+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+A
Sbjct: 169 GERQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMA 228
Query: 235 TFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTV 294
TFV+GF VGF+AVWQLALVTLAVVP+IAVIG IH T+LAKL+ KSQEALSQAGNIVEQTV
Sbjct: 229 TFVSGFVVGFTAVWQLALVTLAVVPIIAVIGGIHTTTLAKLSSKSQEALSQAGNIVEQTV 288
Query: 295 VQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGG 354
VQIRVV AFVGE++ALQ YSSAL++AQ++GY++GFAKGMGLGATYFVVFC YALLLWYGG
Sbjct: 289 VQIRVVLAFVGETRALQGYSSALRIAQKIGYRTGFAKGMGLGATYFVVFCCYALLLWYGG 348
Query: 355 YLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRN 414
YLVRHH+TNGGLAIATMF+VMIGGLAL Q+APS++AF KA+VAAAKIFR+IDHKP IDR
Sbjct: 349 YLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPVIDRR 408
Query: 415 SESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS 474
SESGLEL+SV+GL+EL++VDFSYPSRPEV ILNNFSL VPAGKTIALVGSSGSGKSTVVS
Sbjct: 409 SESGLELESVTGLVELRNVDFSYPSRPEVLILNNFSLNVPAGKTIALVGSSGSGKSTVVS 468
Query: 475 LIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLN 534
LIERFYDP+SGQVLLDG+D+KS KLRWLRQQIGLVSQEPALFATTI+ENILLGRPDA+
Sbjct: 469 LIERFYDPSSGQVLLDGNDVKSFKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQV 528
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
EIEEAARVANA+SFIIKLP+G++TQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEAT
Sbjct: 529 EIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEAT 588
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD+VAVLQQGSV+EIGTHDEL AK
Sbjct: 589 SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELFAK 648
Query: 655 GENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSD 714
GENGVYAKLIRMQE AHET++NNARKSSARPSSARNSVSSPII RNSSYGRSPYSRRLSD
Sbjct: 649 GENGVYAKLIRMQEMAHETSMNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSD 708
Query: 715 FSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNA 774
FSTSDFSLSLDA++P+YR EKLAFK+QASSFWRLAKMNSPEW+YAL+GS+GSV+CGSL+A
Sbjct: 709 FSTSDFSLSLDASHPNYRLEKLAFKDQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSA 768
Query: 775 FFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKR 834
FFAYVLSA++SVYYNP+H +MIREI KYCYLLIGLSSA LLFNTLQHSFWDIVGENLTKR
Sbjct: 769 FFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKR 828
Query: 835 VREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC 894
VREKMLAAVLKNE+AWFDQEENESARIAARL+LDANNVRSAIGDRI VIVQNTALMLVAC
Sbjct: 829 VREKMLAAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVAC 888
Query: 895 TAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTV 954
TAGFVLQWRLALVL+AVFPVVVAATVLQKMFM GFSGD+EAAH+KATQLAGEAI NVRTV
Sbjct: 889 TAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTV 948
Query: 955 AAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHG 1014
AAFNSE IVGLF+SNL+TPLRRCFWKGQI+GSGYG+AQF LYASYALGLWY+SWLVKHG
Sbjct: 949 AAFNSEKKIVGLFTSNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHG 1008
Query: 1015 ISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATP 1074
ISDFS TIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDR TEIEPDDPDATP
Sbjct: 1009 ISDFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRITEIEPDDPDATP 1068
Query: 1075 VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF 1134
VPDRLRGEVELKHVDFSYP+RPD+ +FRDLSLRARAGKTLALVGPSGCGKSSVIAL+QRF
Sbjct: 1069 VPDRLRGEVELKHVDFSYPTRPDMSVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRF 1128
Query: 1135 YEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEA 1194
Y+P+SGRVMIDGKDIRKYNLKSLRRH+A+VPQEPCLFA++IYENIAYGH+SA+E+EIIEA
Sbjct: 1129 YDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATSIYENIAYGHDSASEAEIIEA 1188
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A LANA KFISSLPDGYKTFVGERGVQLSGGQKQR+AIARAFVRKAE+MLLDEATSALDA
Sbjct: 1189 ATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDA 1248
Query: 1255 ESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314
ESERSVQEALDRACSGKTTI+VAHRLSTIRNA++IAVIDDGKVAE GSHS LLKN PDG
Sbjct: 1249 ESERSVQEALDRACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSLLLKNYPDGI 1308
Query: 1315 YARMIQLQRFTHSQVIGMTSGSSSSARPKDDE 1346
YARMIQLQRFT++QVIGM SGSSSSARPKDDE
Sbjct: 1309 YARMIQLQRFTNNQVIGMASGSSSSARPKDDE 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440133|ref|XP_004137839.1| PREDICTED: ABC transporter B family member 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2347 bits (6081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1147/1360 (84%), Positives = 1261/1360 (92%), Gaps = 14/1360 (1%)
Query: 5 SSHQQEIKKIEQWRWSEMQGLELVSSPPF--------NNHNNSNNNYANPSPQAQAQETT 56
S + QEIK EQW+WSEMQGLEL+SS P NN N + + P + Q+
Sbjct: 2 SQYSQEIKTTEQWKWSEMQGLELLSSHPLPPPDPFITNNPTPENTDPEHLRPTQEPQDGV 61
Query: 57 TTTK-RQMENNSSSSSS-----AANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLG 110
K R+ME+ + S ++ +KP VT +G GELFRFAD LDYVLMAIGS+G
Sbjct: 62 GRAKYREMESTTDSKKENGGGGGGSTSGEKPEAVTAIGFGELFRFADGLDYVLMAIGSVG 121
Query: 111 AFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISC 170
A VHGCS P+FLRFFADLVNSFGS N++DKMMQEVLKYAFYFLVVGAAIWASSWAEISC
Sbjct: 122 ALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISC 181
Query: 171 WMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFI 230
WMWTGERQS KMRIKYLEAAL+QD+QYFDTEVRTSDVV+AINTDAV+VQDAISEKLGNFI
Sbjct: 182 WMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFI 241
Query: 231 HYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIV 290
HY+ATFV+GF VGF+AVWQLALVTLAVVPLIAVIG I+ T++AKL+ K+Q+ALS+AGNIV
Sbjct: 242 HYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQDALSEAGNIV 301
Query: 291 EQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLL 350
EQT+VQIRVVFAFVGES+ALQ YS+ALK++Q++G+KSGF+KGMGLGATYFVVFC YALLL
Sbjct: 302 EQTIVQIRVVFAFVGESRALQRYSAALKISQKIGFKSGFSKGMGLGATYFVVFCCYALLL 361
Query: 351 WYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPS 410
WYGGYLVRHH TNGGLAIATMFAVMIGGLAL Q+APS+S+FAKAKVAAAKI+RIIDHKP+
Sbjct: 362 WYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPT 421
Query: 411 IDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKS 470
++RN+ESGLEL+SVSGL+ELK+VDF+YPSRP+VRILNNFSLTVPAGKTIALVGSSGSGKS
Sbjct: 422 LNRNNESGLELESVSGLVELKNVDFAYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKS 481
Query: 471 TVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPD 530
TVVSLIERFYDP SG+VLLDG DIK+LKLRWLRQQIGLVSQEPALFATTIKENILLGRP+
Sbjct: 482 TVVSLIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPE 541
Query: 531 ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
AD E+EEAARVANA+SFIIKLP+G+DTQV ERG+QLSGGQKQRIAIARAMLKNPAILLL
Sbjct: 542 ADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLL 601
Query: 591 DEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDE 650
DEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKAD+VAVLQQGSVSE+GTHDE
Sbjct: 602 DEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEMGTHDE 661
Query: 651 LIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSR 710
L AKGENGVYAKLIRMQE AHETAL+NARKSSARPSSARNSVSSPIIARNSSYGRSPYSR
Sbjct: 662 LFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSR 721
Query: 711 RLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICG 770
RLSDFSTSDFSLSLDA+ P+YR EKLAFKEQASSFWRL KMNSPEW+YAL+GS+GSV+CG
Sbjct: 722 RLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCG 781
Query: 771 SLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGEN 830
L+AFFAYVLSA++SVYYNPDHA+M REI KYCYLLIGLSSA LLFNT+QH FWDIVGEN
Sbjct: 782 FLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGEN 841
Query: 831 LTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALM 890
LTKRVREKML A+LKNE+AWFDQEENESA+IAARLALDANNVRSAIGDRI VIVQNT+LM
Sbjct: 842 LTKRVREKMLTAILKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLM 901
Query: 891 LVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGN 950
LVACTAGFVLQWRL+LVL+AVFPVVVAATVLQKMFM GFSGD+EA H+KATQLAGEAI N
Sbjct: 902 LVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIAN 961
Query: 951 VRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWL 1010
VRTVAAFNSE IV LFS+NL+ PLRRCFWKGQIAGSG+GVAQF LYASYALGLWY+SWL
Sbjct: 962 VRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWL 1021
Query: 1011 VKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDP 1070
VKHG+SDFSK IRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVF LLDRKTEIEPD+P
Sbjct: 1022 VKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDEP 1081
Query: 1071 DATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIAL 1130
DATPVPD+LRGEVELKHVDFSYP+RPDIP+F+DL+LRARAGKTLALVGPSGCGKSSVIAL
Sbjct: 1082 DATPVPDKLRGEVELKHVDFSYPTRPDIPVFKDLNLRARAGKTLALVGPSGCGKSSVIAL 1141
Query: 1131 VQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESE 1190
VQRFYEP+SGRVMIDGKDIRK+NLKSLR+H+A+VPQEPCLFA++IY+NIAYGHESATE+E
Sbjct: 1142 VQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATETE 1201
Query: 1191 IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
IIEAA LANA KFIS LP+GYKTFVGERGVQLSGGQKQR+AIARA +RKAE+MLLDEATS
Sbjct: 1202 IIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATS 1261
Query: 1251 ALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
ALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV+E GSHSHLLKN
Sbjct: 1262 ALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNY 1321
Query: 1311 PDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEEREA 1350
PDGCYARMIQLQRFTHSQVIGMTSGS+SSAR ++DE R++
Sbjct: 1322 PDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEVRDS 1361
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572468|ref|XP_003554390.1| PREDICTED: ABC transporter B family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2345 bits (6077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1143/1348 (84%), Positives = 1239/1348 (91%), Gaps = 29/1348 (2%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSSPPFNNHNNSNNNYANPSPQAQAQETTTTTK 60
MS+DS +EIK IEQW+WSEMQGLELV A PS +E T+
Sbjct: 1 MSKDS---EEIKTIEQWKWSEMQGLELVPE---------EGGAAAPSQHQVPREMNTSEP 48
Query: 61 RQMENNSSSSSSAANS--EPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSF 118
+ +SS++ +N E K+ V VG GELFRFAD LDYVLM IG++GA VHGCS
Sbjct: 49 PNKDVGASSAAVTSNGGGEKKEKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSL 108
Query: 119 PIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQ 178
P+FLRFFADLVNSFGSN N++DKM QEV+KYAFYFLVVGAAIWASSWAEISCWMW+GERQ
Sbjct: 109 PLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQ 168
Query: 179 SIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVT 238
S KMRIKYLEAALNQD+Q+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+ATFV+
Sbjct: 169 STKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVS 228
Query: 239 GFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIR 298
GF VGF+AVWQLALVTLAVVP+IAVIG IH T+LAKL+GKSQEALSQAGNIVEQT+ QIR
Sbjct: 229 GFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTIAQIR 288
Query: 299 VVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVR 358
VV AFVGES+ALQAYSSAL+VAQ++GYK+GFAKGMGLGATYFVVFC YALLLWYGGYLVR
Sbjct: 289 VVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVR 348
Query: 359 HHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESG 418
HH TNGGLAIATMFAVMIGGL L Q+APS++AF KA+VAAAKIFRIIDHKPSID+NSESG
Sbjct: 349 HHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDQNSESG 408
Query: 419 LELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
+ELD+V+GL+ELK+VDFSYPSRPEV+ILN+FSL VPAGKTIALVGSSGSGKSTVVSLIER
Sbjct: 409 VELDTVTGLVELKNVDFSYPSRPEVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIER 468
Query: 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEE 538
FYDPTSGQVLLDGHDIK+L+LRWLRQQIGLVSQEPALFATTI+ENILLGRPDAD EIEE
Sbjct: 469 FYDPTSGQVLLDGHDIKTLRLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEE 528
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
AARVANA+SFIIKLPDG++TQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALD
Sbjct: 529 AARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 588
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658
SESEKLVQEALDRFMIGRTTL+IAHRLSTIRKAD+VAVLQQGSVSEIGTHDEL +KGENG
Sbjct: 589 SESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENG 648
Query: 659 VYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTS 718
VYAKLI+MQE AHETA+NNARKSSAR NSSYGRSPYSRRLSDFSTS
Sbjct: 649 VYAKLIKMQEMAHETAMNNARKSSAR---------------NSSYGRSPYSRRLSDFSTS 693
Query: 719 DFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAY 778
DFSLSLDA++PSYR EKLAFKEQASSFWRLAKMNSPEW+YAL+GS+GSV+CGSL+AFFAY
Sbjct: 694 DFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAY 753
Query: 779 VLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREK 838
VLSA++SVYYNPDH YMIREI KYCYLLIGLSS LLFNTLQH FWDIVGENLTKRVREK
Sbjct: 754 VLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREK 813
Query: 839 MLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGF 898
ML AVLKNE+AWFDQEENESARIAARLALDANNVRSAIGDRI VIVQNTALMLVACTAGF
Sbjct: 814 MLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGF 873
Query: 899 VLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFN 958
VLQWRLALVL+AVFPVVVAATVLQKMFM GFSGD+EAAH+KATQLAGEAI NVRTVAAFN
Sbjct: 874 VLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFN 933
Query: 959 SELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDF 1018
SE IVGLF++NLQ PL+RCFWKGQI+GSGYGVAQF LYASYALGLWY+SWLVKHGISDF
Sbjct: 934 SEKKIVGLFTTNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDF 993
Query: 1019 SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDR 1078
SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDR+TEIEPDD DATPVPDR
Sbjct: 994 SKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDR 1053
Query: 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
LRGEVELKHVDFSYP+RPD+P+FRDLSLRA+AGKTLALVGPSGCGKSSVIAL+QRFY+P+
Sbjct: 1054 LRGEVELKHVDFSYPTRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPT 1113
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA 1198
SGRVMIDGKDIRKYNLKSLRRH+++VPQEPCLFA+TIYENIAYGHES TE+EIIEAA LA
Sbjct: 1114 SGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESTTEAEIIEAATLA 1173
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
NA KFIS LPDGYKTFVGERGVQLSGGQKQR+A+ARAFVRKAE+MLLDEATSALDAESER
Sbjct: 1174 NAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESER 1233
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
SVQEALDRA SGKTTI+VAHRLSTIRNA++IAVIDDGKVAE GSHS LLKN+PDG YARM
Sbjct: 1234 SVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARM 1293
Query: 1319 IQLQRFTHSQVIGMTSGSSSSARPKDDE 1346
IQLQRFTHSQVIGM SGSSSS RPKDDE
Sbjct: 1294 IQLQRFTHSQVIGMASGSSSSTRPKDDE 1321
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545993|ref|XP_003541417.1| PREDICTED: ABC transporter B family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2321 bits (6014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1134/1350 (84%), Positives = 1255/1350 (92%), Gaps = 16/1350 (1%)
Query: 1 MSQDSSHQQEIKKIEQWRWSEMQGLELVSS--PPFNNHNNSNNNYANPSPQAQ--AQETT 56
M+Q+S +EIK +EQWRWSEMQGLEL+SS P N+H +NP+ + + +E +
Sbjct: 1 MAQNS---EEIKTVEQWRWSEMQGLELMSSSAPVSNSHE------SNPTLEEERVMEEAS 51
Query: 57 TTTKRQMENNSSSSSSAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGC 116
+ K++ N + E KK V V GELFRFAD LDY+LMAIG++GAFVHGC
Sbjct: 52 SVEKKEGVPNGTRD---GGGEKKKGETVASVWFGELFRFADGLDYILMAIGTVGAFVHGC 108
Query: 117 SFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGE 176
S P+FLRFFADLVNSFGSN N++DKM QEV+KYAFYFLVVGAAIWASSWAEISCWMWTGE
Sbjct: 109 SLPLFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGE 168
Query: 177 RQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATF 236
RQS +MRI+YLEAAL+QD+Q+FDTEVRTSDVV+AINTDAV+VQDAISEKLGNFIHY+ATF
Sbjct: 169 RQSTRMRIRYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATF 228
Query: 237 VTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQ 296
V+GF VGF+AVWQLALVTLAVVP+IAVIG IH T+LAKL+ KSQEALSQAGNIVEQTVVQ
Sbjct: 229 VSGFVVGFTAVWQLALVTLAVVPIIAVIGGIHTTTLAKLSSKSQEALSQAGNIVEQTVVQ 288
Query: 297 IRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYL 356
IRVV AFVGE++ALQ YSSAL++AQ++GY+ GFAKGMGLGATYFVVFC YALLLWYGGYL
Sbjct: 289 IRVVLAFVGETRALQGYSSALRIAQKIGYRIGFAKGMGLGATYFVVFCCYALLLWYGGYL 348
Query: 357 VRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSE 416
VRHH+TNGGLAI TMF+VMIGGLAL Q+APS++AF KA+VAAAKIFR+IDHKP IDR SE
Sbjct: 349 VRHHYTNGGLAITTMFSVMIGGLALGQSAPSMAAFTKARVAAAKIFRVIDHKPGIDRKSE 408
Query: 417 SGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI 476
SGLEL+SV+GL+EL++VDFSYPSRPE IL+NFSL VPAGKTIALVGSSGSGKSTVVSLI
Sbjct: 409 SGLELESVTGLVELRNVDFSYPSRPEFMILHNFSLNVPAGKTIALVGSSGSGKSTVVSLI 468
Query: 477 ERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEI 536
ERFYDP+SGQVLLDGHD+KSLK RWLRQQIGLVSQEPALFATTI+ENILLGRPDA+ EI
Sbjct: 469 ERFYDPSSGQVLLDGHDVKSLKPRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEI 528
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
EEAARVANA+SFIIKLP+G++TQV ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSA
Sbjct: 529 EEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSA 588
Query: 597 LDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGE 656
LDSESEKLVQ+ALDRFMIGRTTLVIAHRLSTI KAD+VAVLQQGSV+EIGTHDEL AKGE
Sbjct: 589 LDSESEKLVQDALDRFMIGRTTLVIAHRLSTICKADLVAVLQQGSVTEIGTHDELFAKGE 648
Query: 657 NGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFS 716
NGVYAKLIRMQE AHET++NNARKSSARPSSARNSVSSPIIARNSSYGRSPY RRLSDFS
Sbjct: 649 NGVYAKLIRMQEMAHETSMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYPRRLSDFS 708
Query: 717 TSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFF 776
TSDFSLSLDA++P++R EKLAFK+QASSFWRLAKMNSPEW+YAL+GSVGSV+CGSL+AFF
Sbjct: 709 TSDFSLSLDASHPNHRLEKLAFKDQASSFWRLAKMNSPEWLYALIGSVGSVVCGSLSAFF 768
Query: 777 AYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVR 836
AYVLSA++SVYYNP+H +MI+EI KYCYLLIGLSSA LLFNTLQHSFWDIVGENLTKRVR
Sbjct: 769 AYVLSAVLSVYYNPNHRHMIQEIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVR 828
Query: 837 EKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTA 896
EKML AVLKNE+AWFDQEENESARIAARL+LDANNVRSAIGDRI VIVQNTALMLVACTA
Sbjct: 829 EKMLTAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTA 888
Query: 897 GFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAA 956
GFVLQWRLALVL+AVFPVVVAATVLQKMFM GFSGD+EAAH+KATQLAGEAI NVRTVAA
Sbjct: 889 GFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAA 948
Query: 957 FNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGIS 1016
FNSE IVGLF+SNL+TPLRRCFWKGQI+GSGYG+AQF LYASYALGLWY+SWLVKHGIS
Sbjct: 949 FNSEKKIVGLFTSNLETPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGIS 1008
Query: 1017 DFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVP 1076
DFS TIRVFMVLMVSANGAAETLTLAPDFIKGG AMRS FDLLDR+TEIEPDDPDATPVP
Sbjct: 1009 DFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGHAMRSAFDLLDRRTEIEPDDPDATPVP 1068
Query: 1077 DRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE 1136
D LRGEVELKHVDFSYP+RPD+ +FR+LSLRARAGKTLALVGPSGCGKSSVIAL+QRFY+
Sbjct: 1069 DSLRGEVELKHVDFSYPTRPDMSVFRNLSLRARAGKTLALVGPSGCGKSSVIALIQRFYD 1128
Query: 1137 PSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAAR 1196
P+SG+VMIDGKDIRKYNLKSLRRH+A+VPQEPCLFA+TIYENIAYGH+SA+++EIIEAA
Sbjct: 1129 PTSGQVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSASDAEIIEAAT 1188
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
LANA KFISSLPDGYKTFVGERGVQLSGGQKQR+AIARAFVRKAE+MLLDEATSALDAES
Sbjct: 1189 LANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAES 1248
Query: 1257 ERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 1316
ERSVQEAL+RACSGKTTI+VAHRLSTIRNA++IAVIDDGKVAE GSHS LLKN+PDG YA
Sbjct: 1249 ERSVQEALERACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYA 1308
Query: 1317 RMIQLQRFTHSQVIGMTSGSSSSARPKDDE 1346
RMIQLQ+FT++QVIGM SGSSSSAR +DDE
Sbjct: 1309 RMIQLQKFTNNQVIGMASGSSSSARAQDDE 1338
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4204793|gb|AAD10836.1| P-glycoprotein [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 2305 bits (5972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1112/1327 (83%), Positives = 1227/1327 (92%), Gaps = 15/1327 (1%)
Query: 22 MQGLELVSSPPFNNHNNSNNNYANPSPQAQAQETTTTTKRQMENNSSSSSSAANSEPKKP 81
MQG+ELV S N++ + N Q QET K++ + +KP
Sbjct: 1 MQGVELVVSEDKNSNTPTTTTTTNSH---QFQETRMEVKKE-----------EGGDVEKP 46
Query: 82 SDVTP-VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMD 140
S P VG GELFRFAD LD VLM IGSLGAFVHGCS P+FLRFFADLVNSFGS N++D
Sbjct: 47 SSPPPAVGFGELFRFADGLDCVLMIIGSLGAFVHGCSLPLFLRFFADLVNSFGSYANDVD 106
Query: 141 KMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDT 200
KM QEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQ+ KMRIKYLEAALNQD+QYFDT
Sbjct: 107 KMTQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDIQYFDT 166
Query: 201 EVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPL 260
EVRTSDVV AINTDAV+VQDAISEKLGNFIHY+ATF++GF VGF+AVWQLALVTLAVVPL
Sbjct: 167 EVRTSDVVSAINTDAVVVQDAISEKLGNFIHYMATFLSGFVVGFTAVWQLALVTLAVVPL 226
Query: 261 IAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVA 320
IAVIGAI+ + AKL+ +SQEALS+AGNIVEQTVVQIR V FVGE+KALQAY++AL+V+
Sbjct: 227 IAVIGAIYTVTSAKLSSQSQEALSKAGNIVEQTVVQIRTVLVFVGEAKALQAYTAALRVS 286
Query: 321 QRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLA 380
Q++GYKSGF+KG+GLGATYF VFC YALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLA
Sbjct: 287 QKIGYKSGFSKGLGLGATYFTVFCCYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLA 346
Query: 381 LAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSR 440
L Q+APS++AFAKA+VAAAKIFRIIDHKPS+DRN+++GLELD+VSG +ELK+V+FSYPSR
Sbjct: 347 LGQSAPSMTAFAKARVAAAKIFRIIDHKPSVDRNAKTGLELDTVSGQLELKNVEFSYPSR 406
Query: 441 PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500
PE++ILNNF+L VPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ++LDG+DIK+LKL+
Sbjct: 407 PEIKILNNFNLVVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQLMLDGNDIKTLKLK 466
Query: 501 WLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQV 560
WLRQQIGLVSQEPALFAT+IKENILLGRPDA EIEEAARVANA+SF+IKLPDGFDTQV
Sbjct: 467 WLRQQIGLVSQEPALFATSIKENILLGRPDATQIEIEEAARVANAHSFVIKLPDGFDTQV 526
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620
ERG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV
Sbjct: 527 GERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 586
Query: 621 IAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARK 680
IAHRLSTIRKAD+VAVLQQGSVSEIG+HDEL++KGENG+YAKLI+MQEAAHETAL+NARK
Sbjct: 587 IAHRLSTIRKADLVAVLQQGSVSEIGSHDELMSKGENGMYAKLIKMQEAAHETALSNARK 646
Query: 681 SSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKE 740
SSARPSSARNSVSSPII RNSSYGRSPYSRRLSDFSTSDFSLSLDA Y +YR+EKLAFK+
Sbjct: 647 SSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDAAYSNYRNEKLAFKD 706
Query: 741 QASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIA 800
QASSF RLAKMNSPEW YAL+GS+GSVICGSL+AFFAYVLSA++SVYYNPDHAYM +IA
Sbjct: 707 QASSFGRLAKMNSPEWTYALIGSIGSVICGSLSAFFAYVLSAVLSVYYNPDHAYMSEQIA 766
Query: 801 KYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESAR 860
KYCYLLIG+SSA L+FNTLQH +WD+VGENLTKRVREKMLAAVLK E+AWFDQEEN+S+R
Sbjct: 767 KYCYLLIGVSSAALIFNTLQHYYWDVVGENLTKRVREKMLAAVLKMEMAWFDQEENDSSR 826
Query: 861 IAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATV 920
IAARL+LDANNVRSAIGDRI VI+QN+ALMLVACTAGFVLQWRLALVLI VFPVVVAATV
Sbjct: 827 IAARLSLDANNVRSAIGDRISVIMQNSALMLVACTAGFVLQWRLALVLIGVFPVVVAATV 886
Query: 921 LQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFW 980
LQKMFMKGFSGD+EAAH+KATQLAGEA+ NVRTVAAFNSE IV LF S+LQTPLRRCFW
Sbjct: 887 LQKMFMKGFSGDLEAAHAKATQLAGEAVANVRTVAAFNSETKIVNLFDSSLQTPLRRCFW 946
Query: 981 KGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT 1040
KGQIAGSGYG+AQF LY+SYALGLWY+SWLVKHGISDFSKTIRVFMVLMVSANGAAETLT
Sbjct: 947 KGQIAGSGYGIAQFLLYSSYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLT 1006
Query: 1041 LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPI 1100
LAPDFIKGGRAMRSVF+LLDRKTE+EPDDPDAT VPDRLRGEVE KHVDFSYP+RPD+ I
Sbjct: 1007 LAPDFIKGGRAMRSVFELLDRKTEVEPDDPDATAVPDRLRGEVEFKHVDFSYPTRPDVSI 1066
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
FRDL+LRARAGKTLALVGPSGCGKSSVI+L++RFYEPSSGRV+IDGKDIRKYNLKSLRRH
Sbjct: 1067 FRDLNLRARAGKTLALVGPSGCGKSSVISLIERFYEPSSGRVIIDGKDIRKYNLKSLRRH 1126
Query: 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGV 1220
+A+VPQEPCLFA+TIYENIAYGHESATE+EI EAA LANA KFIS+LPDGYKTFVGERGV
Sbjct: 1127 IAVVPQEPCLFATTIYENIAYGHESATEAEITEAATLANAHKFISALPDGYKTFVGERGV 1186
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
QLSGGQKQR+AIARAF+RKAE+MLLDEATSALDAESER VQEALDRAC+GKTTIVVAHRL
Sbjct: 1187 QLSGGQKQRIAIARAFLRKAELMLLDEATSALDAESERCVQEALDRACAGKTTIVVAHRL 1246
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSA 1340
STIRNAHVIAVIDDGKVAE GSHSHLLKN DG YARMIQLQRFTH + + M +GS+SS+
Sbjct: 1247 STIRNAHVIAVIDDGKVAEQGSHSHLLKNYSDGIYARMIQLQRFTHGEAVNMATGSTSSS 1306
Query: 1341 RPKDDEE 1347
RPK+D++
Sbjct: 1307 RPKEDQD 1313
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1350 | ||||||
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.934 | 0.981 | 0.818 | 0.0 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.925 | 0.929 | 0.709 | 0.0 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.905 | 0.976 | 0.506 | 0.0 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.906 | 0.972 | 0.498 | 0.0 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.428 | 0.465 | 0.495 | 2e-301 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.428 | 0.464 | 0.485 | 7.9e-300 | |
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.431 | 0.457 | 0.494 | 8.1e-298 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.424 | 0.466 | 0.494 | 5.1e-296 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.431 | 0.470 | 0.447 | 1.8e-269 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.426 | 0.450 | 0.460 | 7.5e-264 |
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5305 (1872.5 bits), Expect = 0., P = 0.
Identities = 1036/1265 (81%), Positives = 1128/1265 (89%)
Query: 83 DVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKM 142
++ V ELFRFAD LDYVLM IGS+GAFVHGCS P+FLRFFADLVNSFGSN NN++KM
Sbjct: 23 EIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNSNNVEKM 82
Query: 143 MQEVLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEV 202
M+EVLKYA YFLVVG CWMW+GERQ+ KMRIKYLEAALNQD+Q+FDTEV
Sbjct: 83 MEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTEV 142
Query: 203 RTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIA 262
RTSDVV+AINTDAV+VQDAISEKLGNFIHY+ATFV+GF VGF+AVWQLALVTLAVVPLIA
Sbjct: 143 RTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIA 202
Query: 263 VIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQR 322
VIG IH T+L+KL+ KSQE+LSQAGNIVEQTVVQIRVV AFVGES+A QAYSSALK+AQ+
Sbjct: 203 VIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQK 262
Query: 323 LGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALA 382
LGYK+G AKGMGLGATYFVVFC YALLLWYGGYLVRHH TNGGLAIATMFAVMIGGLAL
Sbjct: 263 LGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALG 322
Query: 383 QAAPSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPE 442
Q+APS++ IFRIIDHKP+I+RNSESG+ELDSV+GL+ELK+VDFSYPSRP+
Sbjct: 323 QSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPD 382
Query: 443 VRILNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWL 502
V+ILNNF L+VPAGKTIAL LIERFYDP SGQVLLDG D+K+LKLRWL
Sbjct: 383 VKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWL 442
Query: 503 RQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRE 562
RQQIGLVSQEPALFAT+IKENILLGRPDAD EIEEAARVANA+SFIIKLPDGFDTQV E
Sbjct: 443 RQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGE 502
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIA 622
RG+QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL+IA
Sbjct: 503 RGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIA 562
Query: 623 HRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALXXXXXXX 682
HRLSTIRKAD+VAVLQQGSVSEIGTHDEL +KGENGVYAKLI+MQEAAHETA+
Sbjct: 563 HRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSS 622
Query: 683 XXXXXXXXXXXXPIIARNSSYGRSPYXXXXXXXXXXXXXXXXXAT-YPSYRHEKLAFKEQ 741
PI+ RNSSYGRSPY A+ YP+YR+EKLAFK+Q
Sbjct: 623 ARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQ 682
Query: 742 ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAK 801
A+SFWRLAKMNSPEW YAL+GSVGSVICGSL+AFFAYVLSA++SVYYNPDH YMI++I K
Sbjct: 683 ANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDK 742
Query: 802 YCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARI 861
YCYLLIGLSSA L+FNTLQHSFWDIVGENLTKRVREKML+AVLKNE+AWFDQEENESARI
Sbjct: 743 YCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARI 802
Query: 862 AARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVL 921
AARLALDANNVRSAIGDRI VIVQNTALMLVACTAGFVLQWRLALVL+AVFPVVVAATVL
Sbjct: 803 AARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVL 862
Query: 922 QKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWK 981
QKMFM GFSGD+EAAH+K TQLAGEAI NVRTVAAFNSE IV L+++NL+ PL+RCFWK
Sbjct: 863 QKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWK 922
Query: 982 GQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL 1041
GQIAGSGYGVAQFCLYASYALGLWY+SWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL
Sbjct: 923 GQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL 982
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
APDFIKGG+AMRSVF+LLDRKTEIEPDDPD TPVPDRLRGEVELKH+DFSYPSRPDI IF
Sbjct: 983 APDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIF 1042
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
RDLSLRARAGKTLALVGPSGCGKSSVI+L+QRFYEPSSGRVMIDGKDIRKYNLK++R+H+
Sbjct: 1043 RDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHI 1102
Query: 1162 AIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQ 1221
AIVPQEPCLF +TIYENIAYGH LA+A KFIS+LP+GYKT+VGERGVQ
Sbjct: 1103 AIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQ 1162
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQKQR+AIARA VRKAEIMLLDEATSALDAESERSVQEALD+ACSG+T+IVVAHRLS
Sbjct: 1163 LSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLS 1222
Query: 1282 TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 1341
TIRNAHVIAVIDDGKVAE GSHSHLLKN+PDG YARMIQLQRFTH+QVIGMTSGSSS R
Sbjct: 1223 TIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQRFTHTQVIGMTSGSSS--R 1280
Query: 1342 PKDDE 1346
K+D+
Sbjct: 1281 VKEDD 1285
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 4582 (1618.0 bits), Expect = 0., P = 0.
Identities = 891/1255 (70%), Positives = 1041/1255 (82%)
Query: 86 PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQE 145
P L +LF FAD LDYVLM +G+LGA VHGCS P+FLRFFADLV+SFGS+ + D M++
Sbjct: 92 PAPLRQLFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGSHAAHPDTMLRL 151
Query: 146 VLKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTS 205
V+KYAFYFLVVG CWMWTGERQS +MRI+YL AAL+QDV +FDT+VRTS
Sbjct: 152 VVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQDVSFFDTDVRTS 211
Query: 206 DVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIG 265
DV++AIN DAV+VQDAISEKLGN IHYLATFV+GF VGF+A WQLALVTLAVVPLIAVIG
Sbjct: 212 DVIHAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVTLAVVPLIAVIG 271
Query: 266 AIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325
+ A +LAKL+ +SQ+ALS A I EQ + QIR+V +FVGE + ++AYS+AL VAQR+GY
Sbjct: 272 GLSAAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYSAALAVAQRIGY 331
Query: 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAA 385
+SGFAKG+GLG TYF VFC YALLLWYGG+LVR TNGGLAIATMF+VMIGGLAL Q+A
Sbjct: 332 RSGFAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSA 391
Query: 386 PSISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRI 445
PS++ IFR+++HKPS++R E G+EL++V+G +EL+ V+FSYPSRP+V I
Sbjct: 392 PSMAAFAKARVAAAKIFRMMEHKPSMER--EGGVELEAVTGRVELRDVEFSYPSRPDVGI 449
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L SL+VPAGKTIAL LIERFY+P +G +LLDGHD++ L LRWLR+Q
Sbjct: 450 LRGLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQ 509
Query: 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565
IGLVSQEPALFATTI+EN+LLGR A E+EEAARVANA+SFI+KLPD ++TQV ERG+
Sbjct: 510 IGLVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGL 569
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625
QLSGGQKQRIAIARAML+NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL
Sbjct: 570 QLSGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 629
Query: 626 STIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALXXXXXXXXXX 685
STIRKAD+VAVLQ G++SE+GTHDEL+A+G+ G YA+LIRMQE AHE AL
Sbjct: 630 STIRKADLVAVLQGGAISEVGTHDELMARGD-GTYARLIRMQEQAHEAALVAARRSSARP 688
Query: 686 XXXXXXXXXPIIARNSSYGRSPYXXXXXXXXXXXXXXXXXATYPSYRHEKLAFKEQASSF 745
PII RNSSYGRSPY + + ++ F+ QASSF
Sbjct: 689 SSARNSVSSPIITRNSSYGRSPYSRRLSDADFITGLGLGVDS--KQQQQQHYFRVQASSF 746
Query: 746 WRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805
WRLAKMNSPEW YALV S+GS++CGS +A FAYVLSA++SVYY PD AYM R+IAKYCYL
Sbjct: 747 WRLAKMNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYL 806
Query: 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARL 865
LIG+SSA LLFNT+QH FWD VGENLTKRVRE+MLAAVL+NEIAWFD E+N SARIAARL
Sbjct: 807 LIGMSSAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARL 866
Query: 866 ALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMF 925
ALDA NVRSAIGDRI +IVQN+ALMLVACTAGFVLQWRLALVL+AVFP+VVAATVLQKMF
Sbjct: 867 ALDAQNVRSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMF 926
Query: 926 MKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIA 985
+KGFSGD+E AH++ATQ+AGEA+ NVRTVAAF SE IVGLF +NL PLRRCFWKGQIA
Sbjct: 927 LKGFSGDLERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIA 986
Query: 986 GSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 1045
GSGYGVAQF LYASYALGLWY++WLVKHG+SDFSKTIRVFMVLMVSANGAAETLTLAPDF
Sbjct: 987 GSGYGVAQFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDF 1046
Query: 1046 IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLS 1105
+KGGRAM++VF+ +DR+TEIEPDD DA VP+R RGEVELKHVDF+YPSRP++ +FRDLS
Sbjct: 1047 VKGGRAMQAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLS 1106
Query: 1106 LRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVP 1165
LRARAG+TLALVG SGCGKSSV+ALVQRFYEP+SGRV++DG+D+RK+NL+SLRR MA+VP
Sbjct: 1107 LRARAGRTLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVP 1166
Query: 1166 QEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGG 1225
QEP LFA+TI++NIAYG ANA KFIS+LP+GY T VGERGVQLSGG
Sbjct: 1167 QEPFLFAATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGG 1226
Query: 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR 1284
Q+QR+AIARA V++A I+LLDEATSALDAESERSVQEAL + SG+TTIVVAHRL+T+R
Sbjct: 1227 QRQRIAIARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVVAHRLATVR 1286
Query: 1285 NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSS 1339
NAH IAVIDDGKVAE GSHSHLL ++PDGCYARM+QLQR +HS V S S+++
Sbjct: 1287 NAHTIAVIDDGKVAEQGSHSHLLNHHPDGCYARMLQLQRLSHSHVAPGPSSSTTT 1341
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3187 (1126.9 bits), Expect = 0., P = 0.
Identities = 626/1236 (50%), Positives = 852/1236 (68%)
Query: 91 ELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYA 150
+LF FAD DY+LM +GSLGA VHG S P+F F +VN FG N ++ +M+ EV +Y+
Sbjct: 28 KLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVSRYS 87
Query: 151 FYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA 210
YF+ +G CWM++GERQ +R KYLEA L QDV +FDT+ RT D+V++
Sbjct: 88 LYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDARTGDIVFS 147
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
++TD ++VQDAISEK+GNFIHYL+TF+ G VGF + W+LAL+++AV+P IA G ++A
Sbjct: 148 VSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGGLYAY 207
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+L + KS+E+ + AG I EQ + Q+R V+++VGESKAL AYS A++ +LGYK+G A
Sbjct: 208 TLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYKAGMA 267
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISX 390
KG+GLG TY + S+AL+ WY G +R+ T+GG A +F+ ++GG++L Q+ ++
Sbjct: 268 KGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGA 327
Query: 391 XXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
+ II+ +P+I ++ G LD V G IE K V FSYPSRP+V I NF+
Sbjct: 328 FSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRNFN 387
Query: 451 LTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
+ P+GKT+A+ LIERFYDP SGQ+LLDG +IK+L+L++LR+QIGLV+
Sbjct: 388 IFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGLVN 447
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEPALFATTI ENIL G+PDA + E+E AA ANA+SFI LP G+DTQV ERGVQLSGG
Sbjct: 448 QEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLSGG 507
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARAMLK+P ILLLDEATSALD+ SE +VQEALDR M+GRTT+V+AHRL TIR
Sbjct: 508 QKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTIRN 567
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALXXXXXXXXXXXXXXX 690
D +AV+QQG V E GTH+ELIAK +G YA LIR QE
Sbjct: 568 VDSIAVIQQGQVVETGTHEELIAK--SGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 691 XXXXPIIARNSSYGRSPYXXXXXXXXXXXXXXXXXATYPSYRHEKLAFKEQASSFWRLAK 750
++ S R+ T K E + F+RL K
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAET-----DRKTRAPE--NYFYRLLK 678
Query: 751 MNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLS 810
+NSPEW Y+++G+VGS++ G + FA V+S ++ V+Y D+ M R+ +Y ++ IG
Sbjct: 679 LNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAG 738
Query: 811 SAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDAN 870
+ +QH F+ I+GENLT RVR ML+A+L+NE+ WFD++E+ S+ IAARLA DA
Sbjct: 739 LYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAA 798
Query: 871 NVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFS 930
+V+SAI +RI VI+QN +L + F+++WR++L+++ FP++V A Q++ +KGF+
Sbjct: 799 DVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFA 858
Query: 931 GDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYG 990
GD AH+K + +AGE + N+RTVAAFN++ I+ LF L+ P +R ++ Q +G +G
Sbjct: 859 GDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFG 918
Query: 991 VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGR 1050
++Q LY S AL LWY + LV G+S FSK I+VF+VL+++AN AET++LAP+ I+GG
Sbjct: 919 LSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGE 978
Query: 1051 AMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARA 1110
A+ SVF +LDR+T I+PDD DA PV + +RG++E +HVDF+YPSRPD+ +FRD +LR RA
Sbjct: 979 AVGSVFSVLDRQTRIDPDDADADPV-ETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRA 1037
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCL 1170
G + ALVG SG GKSSVIA+++RFY+P +G+VMIDGKDIR+ NLKSLR + +V QEP L
Sbjct: 1038 GHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL 1097
Query: 1171 FASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230
FA+TI++NIAYG R ANA FIS LP+GYKT VGERGVQLSGGQKQR+
Sbjct: 1098 FAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRI 1157
Query: 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIA 1290
AIARA ++ ++LLDEATSALDAESE +QEAL+R G+TT+VVAHRLSTIR I
Sbjct: 1158 AIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIG 1217
Query: 1291 VIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTH 1326
VI DG++ E GSHS L+ + P+G Y+R++QLQ TH
Sbjct: 1218 VIQDGRIVEQGSHSELV-SRPEGAYSRLLQLQ--TH 1250
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3177 (1123.4 bits), Expect = 0., P = 0.
Identities = 618/1239 (49%), Positives = 856/1239 (69%)
Query: 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEV 146
V ELF FAD LD++LMA GS GA VHG + P+F F +L+N FG N +++ +M EV
Sbjct: 29 VAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTDEV 88
Query: 147 LKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSD 206
KY+ YF+ +G CWM+TGERQ +R +YLEA L QDV +FDT+ RT D
Sbjct: 89 SKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTGD 148
Query: 207 VVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266
VV++++TD ++VQDAI EK+GNFIHYL+TF+ G VGF + W+LAL+++AV+P IA G
Sbjct: 149 VVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGG 208
Query: 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326
++A +L L KS+++ + AG I EQ + Q+R V+++VGESKAL +YS A++ +LGYK
Sbjct: 209 LYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLGYK 268
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP 386
+G AKG+G+G TY + S+AL+ WY G +R+ T+GG A +F+ ++GGL+L Q+
Sbjct: 269 AGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQSFS 328
Query: 387 SISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRIL 446
++ + +I +P+I ++ G LD V G IE K V FSYPSRP+V I
Sbjct: 329 NLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVMIF 388
Query: 447 NNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506
+FSL PAGKT A+ LIERFYDP GQVLLD DIK+L+L+WLR QI
Sbjct: 389 RDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRDQI 448
Query: 507 GLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566
GLV+QEPALFATTI ENIL G+PDA + E+E AA ANA+SFI LP+G++TQV ERG+Q
Sbjct: 449 GLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERGLQ 508
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLS 626
LSGGQKQRIAIARAMLKNP ILLLDEATSALD+ SE +VQEALDR M+GRTT+V+AHRLS
Sbjct: 509 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLS 568
Query: 627 TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALXXXXXXXXXXX 686
TIR D++AV+QQG V E GTHDEL+AKG +G YA LIR QE A
Sbjct: 569 TIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSRSS 628
Query: 687 XXXXXXXXPIIARNSSYGRS---PYXXXXXXXXXXXXXXXXXATYPSYRHEKLAFKEQAS 743
++ S R+ Y YP+ +
Sbjct: 629 RLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPK----------G 678
Query: 744 SFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYC 803
F++L K+N+PEW Y ++G++GS++ G + FA V+S ++ V+Y D M R+ +Y
Sbjct: 679 YFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYV 738
Query: 804 YLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAA 863
++ IG ++ +QH F+ I+GENLT RVR MLAA+L+N++ WFDQEEN S+ +AA
Sbjct: 739 FIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAA 798
Query: 864 RLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQK 923
RL+ DA +V+SAI +RI VI+QN +LV+ GF+++WR+A++++ FP++V A Q+
Sbjct: 799 RLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQ 858
Query: 924 MFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQ 983
+ MKGF+GD AH+K + +AGE + N+RTVAAFN++ ++ LF + L+ P + Q
Sbjct: 859 LSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQ 918
Query: 984 IAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAP 1043
I+G+ +G++Q LYAS AL LWY + LV+H +S FSK I+VF+VL+++AN AET++LAP
Sbjct: 919 ISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAP 978
Query: 1044 DFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRD 1103
+ ++GG ++RSVF +L+ +T I+PD+P+ PV + +RG+++ +HVDF+YPSRPD+ +F+D
Sbjct: 979 EIVRGGESIRSVFAILNYRTRIDPDEPETEPV-ESVRGDIDFRHVDFAYPSRPDVMVFKD 1037
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
SLR RAG++ ALVG SG GKS+VIAL++RFY+P +G+VMIDGKDIR+ N++SLR + +
Sbjct: 1038 FSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLRLKIGL 1097
Query: 1164 VPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQLS 1223
V QEP LFA++I+ENIAYG ++AN F+S+LP+GYKT VGERGVQLS
Sbjct: 1098 VQQEPVLFATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTPVGERGVQLS 1157
Query: 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTI 1283
GGQKQR+AIARA ++ ++LLDEATSALDAESE +QEAL+R G+T ++VAHRLSTI
Sbjct: 1158 GGQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVAHRLSTI 1217
Query: 1284 RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
R IAV+ DG+V E GSH L+ + PDG Y+R++QLQ
Sbjct: 1218 RGVDSIAVVQDGRVVEQGSHGELV-SRPDGAYSRLLQLQ 1255
|
|
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1471 (522.9 bits), Expect = 2.0e-301, Sum P(2) = 2.0e-301
Identities = 289/583 (49%), Positives = 400/583 (68%)
Query: 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEV 146
V L LF AD LDY LM +G LGA +HG + P+F FF +++S G+ + + V
Sbjct: 30 VSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSRV 89
Query: 147 LKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSD 206
+ A Y + +G CWM TGERQ+ ++RI YL++ L +D+ +FDTE R S+
Sbjct: 90 SQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDSN 149
Query: 207 VVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266
+++ I++DA++VQDAI +K + + YL+ F+ GF +GF +VWQL L+TL VVPLIA+ G
Sbjct: 150 LIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAGG 209
Query: 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326
+A ++ ++ KS+ A + AG + E+ + Q+R V+AFVGE KA+++YS++LK A +LG +
Sbjct: 210 GYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGKR 269
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP 386
SG AKG+G+G TY ++FC++ALLLWY LVRH TNG A T+ V+ G AL QAAP
Sbjct: 270 SGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAP 329
Query: 387 SISXXXXXXXXXXXIFRIIDHKPS-IDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRI 445
S+S IFR+I + S + + G L +V+G IE + V F+YPSRP + +
Sbjct: 330 SLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNM-V 388
Query: 446 LNNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
N S T+ +GKT A +++RFY+P SG++LLDG+DIKSLKL+W R+Q
Sbjct: 389 FENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQ 448
Query: 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565
+GLVSQEPALFATTI NILLG+ +A++++I EAA+ ANA SFI LP+G++TQV E G
Sbjct: 449 LGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGT 508
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625
QLSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESEK+VQ+ALD M RTT+V+AHRL
Sbjct: 509 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRL 568
Query: 626 STIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQE 668
STIR D + VL+ G V E G+H EL+ +G G YA L+ QE
Sbjct: 569 STIRNVDKIVVLRDGQVRETGSHSELMLRG--GDYATLVNCQE 609
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1462 (519.7 bits), Expect = 7.9e-300, Sum P(2) = 7.9e-300
Identities = 282/581 (48%), Positives = 401/581 (69%)
Query: 742 ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAK 801
+S W L K+N+PEW+YAL+GS+G+V+ GS A F+ L+ +++ +Y+P + + RE+ K
Sbjct: 666 SSMIWELIKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDK 725
Query: 802 YCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARI 861
+ +G LQH F+ ++GE LT RVR + +A+L NEI WFD +EN + +
Sbjct: 726 VAIIFVGAGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSL 785
Query: 862 AARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVL 921
+ LA DA VRSAI DR+ IVQN +L + A F WR+A V+ A FP+++AA++
Sbjct: 786 TSILAADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLT 845
Query: 922 QKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWK 981
+++F+KGF GD A+S+AT LA EAI N+RTVAAF++E I F+ L P + +
Sbjct: 846 EQLFLKGFGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLR 905
Query: 982 GQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL 1041
G I+G GYG++Q + SYALGLWY S L+K ++F +I+ FMVL+V+A AETL L
Sbjct: 906 GHISGFGYGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLAL 965
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
PD +KG +A+ SVF +L R+TEI PD P++ V ++G++E ++V F+YP+RP+I IF
Sbjct: 966 TPDIVKGTQALGSVFRVLHRETEIPPDQPNSRLVT-HIKGDIEFRNVSFAYPTRPEIAIF 1024
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
++L+LR AGK+LA+VGPSG GKS+VI L+ RFY+PS+G + IDG DI+ NL+SLR+ +
Sbjct: 1025 KNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKL 1084
Query: 1162 AIVPQEPCLFASTIYENIAYGHXXXXXXXXXXXXRLANADKFISSLPDGYKTFVGERGVQ 1221
A+V QEP LF+++I+ENI YG+ + ANA +FIS + +GY T VG++GVQ
Sbjct: 1085 ALVQQEPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQ 1144
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQKQRVAIARA ++ ++LLDEATSALD +E+ VQEALD+ G+TTI+VAHRLS
Sbjct: 1145 LSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLS 1204
Query: 1282 TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
TIR A I V+ GKV E GSH L+ + DG Y ++ LQ
Sbjct: 1205 TIRKADTIVVLHKGKVVEKGSHRELVSKS-DGFYKKLTSLQ 1244
|
|
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 8.1e-298, Sum P(2) = 8.1e-298
Identities = 289/584 (49%), Positives = 395/584 (67%)
Query: 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEV 146
V L +LF FAD D VLM +GS+GA +HG S PIF FF L+N G + V
Sbjct: 60 VSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQASHRV 119
Query: 147 LKYAFYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSD 206
KY+ F+ + CWM TGERQ+ KMR YL + L+QD+ FDTE T +
Sbjct: 120 AKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTGE 179
Query: 207 VVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266
V+ AI +D ++VQDA+SEK+GNF+HY++ F+ GFA+GF++VWQ++LVTL++VPLIA+ G
Sbjct: 180 VISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAGG 239
Query: 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326
I+A L + +++ +AG I E+ + +R V AF GE +A++ Y AL+ + G K
Sbjct: 240 IYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGRK 299
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP 386
+G KG+GLG+ + V+F S+ALL+W+ +V +GG + TM V+I GL+L QAAP
Sbjct: 300 AGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAP 359
Query: 387 SISXXXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRIL 446
IS IF++I+ +++SG +L V G I+ K FSYPSRP+V I
Sbjct: 360 DISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIF 419
Query: 447 NNFSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506
+ +L +PAGK +AL LIERFY+P SG VLLDG++I L ++WLR QI
Sbjct: 420 DRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQI 479
Query: 507 GLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566
GLV+QEPALFATTI+ENIL G+ DA EI AA+++ A SFI LP+GF+TQV ERG+Q
Sbjct: 480 GLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQ 539
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLS 626
LSGGQKQRIAI+RA++KNP+ILLLDEATSALD+ESEK VQEALDR M+GRTT+V+AHRLS
Sbjct: 540 LSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLS 599
Query: 627 TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
T+R AD++AV+ +G + E G H+ LI+ + G Y+ L+R+QE A
Sbjct: 600 TVRNADIIAVVHEGKIVEFGNHENLISNPD-GAYSSLLRLQETA 642
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1453 (516.5 bits), Expect = 5.1e-296, Sum P(2) = 5.1e-296
Identities = 288/582 (49%), Positives = 400/582 (68%)
Query: 91 ELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYA 150
+LF FAD D VLMA+GS+GA +HG S P+F FF L+N G + +V KY+
Sbjct: 28 KLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINIIGLAYLFPQEASHKVAKYS 87
Query: 151 FYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA 210
F+ + CWM TGERQ+ K+R YL + L+QD+ FDTE+ T +V+ A
Sbjct: 88 LDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAYLRSMLSQDISLFDTEISTGEVISA 147
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
I ++ ++VQDAISEK+GNF+H+++ F+ GFA+GF++VWQ++LVTL++VP IA+ G I+A
Sbjct: 148 ITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPFIALAGGIYAF 207
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+ L + +++ +A I E+ + +R V AF GE KA+ +Y AL+ G K+G A
Sbjct: 208 VSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGEEKAVSSYQGALRNTYNYGRKAGLA 267
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISX 390
KG+GLG+ +FV+F S+ALL+W+ +V NGG + TM V+I GL+L QAAP IS
Sbjct: 268 KGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGESFTTMLNVVIAGLSLGQAAPDIST 327
Query: 391 XXXXXXXXXXIFRIIDHKPSIDRNSE--SGLELDSVSGLIELKHVDFSYPSRPEVRILNN 448
IF++I+ RN+E +G +L +V+G I K V F+YPSRP+V I +
Sbjct: 328 FMRASAAAYPIFQMIE------RNTEDKTGRKLGNVNGDILFKDVTFTYPSRPDVVIFDK 381
Query: 449 FSLTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508
+ +PAGK +AL LIERFY+PT G V+LDG+DI+ L L+WLR IGL
Sbjct: 382 LNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGL 441
Query: 509 VSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568
V+QEP LFATTI+ENI+ G+ DA EI AA+++ A SFI LP+GF+TQV ERG+QLS
Sbjct: 442 VNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLS 501
Query: 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI 628
GGQKQRI+I+RA++KNP+ILLLDEATSALD+ESEK+VQEALDR M+GRTT+V+AHRLST+
Sbjct: 502 GGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTV 561
Query: 629 RKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
R AD++AV+ G + E G+HDELI+ + G Y+ L+R+QEAA
Sbjct: 562 RNADIIAVVGGGKIIESGSHDELISNPD-GAYSSLLRIQEAA 602
|
|
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1311 (466.6 bits), Expect = 1.8e-269, Sum P(2) = 1.8e-269
Identities = 262/586 (44%), Positives = 374/586 (63%)
Query: 739 KEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIRE 798
K Q SF RL MN PEW AL G + + + G++ +AY L +++SVY+ H + +
Sbjct: 652 KPQLPSFKRLLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEK 711
Query: 799 IAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENES 858
Y +GL+ L N QH + +GE LTKR+RE+ML+ VL E+ WFD++EN S
Sbjct: 712 TRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSS 771
Query: 859 ARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAA 918
I +RLA DAN VRS +GDR+ ++VQ + + +A T G V+ WRLALV+IAV PV++
Sbjct: 772 GAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVC 831
Query: 919 TVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRC 978
+++ +K S A ++++LA EA+ NVRT+ AF+S+ I+ + ++P R
Sbjct: 832 FYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRES 891
Query: 979 FWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAET 1038
+ AG G ++Q ++AL WY L++ G FM+L+ + A+
Sbjct: 892 IRQSWFAGFGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADA 951
Query: 1039 LTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDI 1098
++ D KG A+ SVF +LDR T I+P+DPD +R+ G+VE VDFSYP+RPD+
Sbjct: 952 GSMTTDLAKGSDAVGSVFAVLDRYTSIDPEDPDGYET-ERITGQVEFLDVDFSYPTRPDV 1010
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
IF++ S++ GK+ A+VGPSG GKS++I L++RFY+P G V IDG+DIR Y+L+SLR
Sbjct: 1011 IIFKNFSIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLR 1070
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHXXXXXXXXXX--XXRLANADKFISSLPDGYKTFVG 1216
RH+A+V QEP LFA TI ENI YG + ANA FI+SL +GY T+ G
Sbjct: 1071 RHIALVSQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCG 1130
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVV 1276
+RGVQLSGGQKQR+AIARA ++ ++LLDEATSALD++SER VQ+AL+R G+T++V+
Sbjct: 1131 DRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVI 1190
Query: 1277 AHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
AHRLSTI+N IAV+D GK+ E G+HS LL P G Y ++ LQ
Sbjct: 1191 AHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQ 1236
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1342 (477.5 bits), Expect = 7.5e-264, Sum P(2) = 7.5e-264
Identities = 266/578 (46%), Positives = 368/578 (63%)
Query: 91 ELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYA 150
+LF FADS D +LM GS+GA +G S P F DL++SFG N NN D ++ V K
Sbjct: 45 KLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKD-IVDVVSKVC 103
Query: 151 FYFLVVGXXXXXXXXXXXXCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA 210
F+ +G CWM TGERQ+ ++R YL+ L QD+ +FD E T +VV
Sbjct: 104 LKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEVVGR 163
Query: 211 INTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHAT 270
++ D V++QDA+ EK+G FI ++TFV GF + F W L LV L +PL+A+ GA A
Sbjct: 164 MSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMAL 223
Query: 271 SLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA 330
+ + + + Q A ++A +VEQT+ IR V +F GE +A+ +Y + A + + GF+
Sbjct: 224 IVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGFS 283
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISX 390
G+GLG +FV F SYAL +W+GG ++ GG I + V+ G ++L Q +P ++
Sbjct: 284 TGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVTA 343
Query: 391 XXXXXXXXXXIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFS 450
+F I KP ID +G L+ + G IELK V FSYP+RP+ I + FS
Sbjct: 344 FAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGFS 403
Query: 451 LTVPAGKTIALXXXXXXXXXXXXXLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L +P+G T AL LIERFYDP SG VL+DG ++K +L+W+R +IGLVS
Sbjct: 404 LFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVS 463
Query: 511 QEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
QEP LF+++I ENI G+ +A + EI+ A +ANA FI KLP G DT V E G QLSGG
Sbjct: 464 QEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGG 523
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
QKQRIAIARA+LK+P ILLLDEATSALD+ESE++VQEALDR M+ RTT+++AHRLST+R
Sbjct: 524 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRN 583
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQE 668
AD++AV+ +G + E G+H EL+ K G Y++LIR+QE
Sbjct: 584 ADMIAVIHRGKMVEKGSHSELL-KDSEGAYSQLIRLQE 620
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.4060 | 0.8955 | 0.9474 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.4112 | 0.8977 | 0.9468 | yes | no |
| Q9ZR72 | AB1B_ARATH | No assigned EC number | 0.8802 | 0.9385 | 0.9852 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.4154 | 0.8925 | 0.9443 | yes | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4084 | 0.9229 | 0.8919 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_XVI000833 | multidrug/pheromone exporter, MDR family, ABC transporter family (1324 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1350 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-153 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-146 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-141 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-132 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-131 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-127 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-119 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-119 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-119 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-117 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-116 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-109 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-108 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-107 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-105 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-104 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-101 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-101 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-96 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-95 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-94 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-92 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-88 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-87 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-86 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-86 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-84 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-82 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-82 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-81 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-80 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-80 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-78 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-76 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-74 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-74 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-73 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-72 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-70 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-68 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-68 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-68 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-67 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-66 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-65 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-65 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-64 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-64 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-63 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-63 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-63 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-62 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-60 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-59 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-59 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-57 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-56 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-56 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-56 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-55 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-53 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-52 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-51 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-51 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-50 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-50 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-49 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-49 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-49 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-48 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-47 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-47 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-47 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-46 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-46 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-46 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-45 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-45 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-45 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-44 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-44 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-43 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-43 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-43 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-43 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-43 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-42 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-42 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-42 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-42 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-42 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-42 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-42 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-41 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-41 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-41 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-41 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-41 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-40 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-39 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-39 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-39 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-39 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-39 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-38 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-38 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-38 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-38 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-38 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-38 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-37 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-37 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-37 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-37 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-37 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-37 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-37 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-36 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-36 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-36 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-36 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-36 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-36 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-35 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-35 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-35 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-35 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-35 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-35 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-35 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-35 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-35 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-34 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-34 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-34 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-34 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-34 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-33 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-33 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-33 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-33 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-33 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-33 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-33 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-33 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-33 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-32 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-32 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-32 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-32 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-32 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-32 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-32 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-31 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-31 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-31 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-31 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-31 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-31 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-31 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-31 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-30 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-30 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-30 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-30 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-30 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-30 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-30 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-30 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-30 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-30 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-30 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-29 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-29 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-29 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-29 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-29 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-29 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-29 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-29 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-29 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-29 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-29 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-29 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-29 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-28 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-28 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-28 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-28 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-28 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-28 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-28 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-28 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-28 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-28 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-27 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-27 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-27 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-27 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-27 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-27 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-27 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-27 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-27 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-27 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-27 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-27 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-27 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-27 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-27 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-27 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-26 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-26 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-26 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-26 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-26 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-26 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-26 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-26 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-26 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-26 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-26 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-26 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-26 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-26 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-26 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-26 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-26 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-26 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-25 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-25 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-25 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-25 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-25 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-25 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-25 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-25 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-25 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-25 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-25 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-25 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-25 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-25 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-25 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-25 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-25 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-25 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 8e-25 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-25 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-25 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-24 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-24 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-24 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-24 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-24 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-24 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-24 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-24 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-24 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-24 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-24 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-24 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-24 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-24 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-24 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-24 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-24 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-24 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-24 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-23 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-23 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-23 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-23 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-23 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-23 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-23 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-23 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-23 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-23 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-23 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-23 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-23 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-23 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-23 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-23 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-23 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-23 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-23 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-22 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-22 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-22 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-22 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-22 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-22 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-22 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-22 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-22 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-22 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-22 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-22 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-22 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-22 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-22 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-22 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-21 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-21 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-21 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-21 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-21 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-21 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-21 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-21 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-21 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-21 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-21 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-21 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-21 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-21 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-21 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-21 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-21 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 9e-21 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-20 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-20 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-20 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-20 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-20 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-20 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-20 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-20 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-20 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-20 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-20 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-20 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-20 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-20 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-19 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-19 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-19 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-19 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-19 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-19 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-19 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-18 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-18 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-18 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-18 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-18 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-18 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-18 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-18 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-18 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 7e-18 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-17 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-17 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-17 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-17 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-17 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-17 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-17 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-17 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-16 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-16 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-16 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-16 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-16 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-15 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-15 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-15 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-15 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-15 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-15 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 9e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-14 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-14 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-14 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-13 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-13 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-12 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-12 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-12 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 6e-12 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-11 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-11 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-11 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-09 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-09 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-08 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 6e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 7e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 9e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 7e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 6e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 461 bits (1189), Expect = e-153
Identities = 175/240 (72%), Positives = 199/240 (82%), Gaps = 2/240 (0%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE K+V F YPSRP+V IL SLT+P GKT+ALVGSSG GKSTVVSL+ERFYDPTSG++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
LLDG DI+ L LRWLR QIGLVSQEP LF TI ENI G+PDA E+EEAA+ AN +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
FI+ LPDG+DT V ERG QLSGGQKQRIAIARA+L+NP ILLLDEATSALD+ESEKLVQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
ALDR M GRTT+VIAHRLSTIR AD++AVLQ G V E GTHDEL+A+ GVYAKL++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK--GVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 482 bits (1242), Expect = e-146
Identities = 389/1446 (26%), Positives = 660/1446 (45%), Gaps = 265/1446 (18%)
Query: 103 LMAIGSLGAFVHGCSFPIFLRFFADLVNS--FGSNVNNMDKMMQEVLKYAFYFLVVGAAI 160
L+ + + A + G + P F+ F ++ + G NVN++ F +++G
Sbjct: 61 LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDI----------IFSLVLIGIFQ 110
Query: 161 WASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDT---EVRTSDVVYAINTDAVI 217
+ S+ C + +++++L++ QD Q+ D TSD+ + +
Sbjct: 111 FILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQ---- 166
Query: 218 VQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAG 277
V I K Y + F+ + +L L V PLI + G I K+
Sbjct: 167 VNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVI-CNKKVKINK 225
Query: 278 KSQEALSQ-AGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLG 336
K+ + +I+E+ +V IR V ++ GE L+ ++ + K+ + K+ F + + +G
Sbjct: 226 KTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285
Query: 337 ATYFVVFCSYALLLWYGGYLVRHHFTN--------GGLAIATMFAVMIGGLALAQAAPSI 388
+ SYA WYG ++ +N GG I+ + V+I L P+I
Sbjct: 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNI 345
Query: 389 SAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNN 448
+ + K+ A ++ II+ KP ++ N++ G +L + I+ K+V F Y +R +V I +
Sbjct: 346 TEYMKSLEATNSLYEIINRKPLVE-NNDDGKKLKDIKK-IQFKNVRFHYDTRKDVEIYKD 403
Query: 449 FSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL-DGHDIKSLKLRWLRQQIG 507
+ T+ GKT A VG SG GKST++ LIER YDPT G +++ D H++K + L+W R +IG
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463
Query: 508 LVSQEPALFATTI---------------------------------KENILLGRPDADLN 534
+VSQ+P LF+ +I K N + DLN
Sbjct: 464 VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523
Query: 535 ------------------EIEEAARVANA------YSFIIKLPDGFDTQVRERGVQLSGG 570
+ + + V + + F+ LPD ++T V +LSGG
Sbjct: 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGG 583
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTI 628
QKQRI+IARA+++NP IL+LDEATS+LD++SE LVQ+ ++ R T++IAHRLSTI
Sbjct: 584 QKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643
Query: 629 RKADVVAVL---QQGSVS------------------------------------------ 643
R A+ + VL ++GS
Sbjct: 644 RYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSY 703
Query: 644 --EIGTHDELIAKGENGVYAKLIRMQEAAHETALNNAR------KSSARPSSAR----NS 691
E GTHD L+ K +NG+Y +I Q+ + + + NN KSSA S R +
Sbjct: 704 IIEQGTHDALM-KNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDE 762
Query: 692 VSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKM 751
++ N S + S ++SD + S+ + KL F F R K
Sbjct: 763 MNGNSKHENES-ASNKKSCKMSDENASE----------NNAGGKLPFLRNL--FKRKPKA 809
Query: 752 -NSPEWVYALVGS---------VGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAK 801
N+ VY + S + ++ G L FA + + +S + D A + K
Sbjct: 810 PNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLF--DFANLEANSNK 867
Query: 802 YCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARI 861
Y ++ ++ A + TL++ + +++GE + K ++ ++ +L EI++FDQ+++ +
Sbjct: 868 YSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLL 927
Query: 862 AARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVL-------IAVFPV 914
+A + D + +++ + + I + L LV+ F +A VL + VF +
Sbjct: 928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987
Query: 915 VVAATVLQKMFMKG---------FSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVG 965
T + + K ++ D E + L EA N+ TV + E
Sbjct: 988 RARLTANKDVEKKEINQPGTVFAYNSDDEI-FKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046
Query: 966 LFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHG---ISDFSKTI 1022
L + + K + +G +Q + W+ S+L++ G + DF K++
Sbjct: 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSL 1106
Query: 1023 RVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDR--LR 1080
F+ + + A + ++L D + + L+ RK+ I+ D + ++ ++
Sbjct: 1107 FTFLF---TGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIK 1163
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY----- 1135
G++E+ V+F Y SRP++PI++DL+ + KT A+VG +G GKS+V++L+ RFY
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223
Query: 1136 ---------------------------------EPSSGRVMIDGKD-------------- 1148
E S + G+D
Sbjct: 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283
Query: 1149 --IRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISS 1206
I YNLK LR +IV QEP LF +IYENI +G E AT ++ A + A D+FI S
Sbjct: 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIES 1343
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL-- 1264
LP+ Y T VG G LSGGQKQR+AIARA +R+ +I+LLDEATS+LD+ SE+ +++ +
Sbjct: 1344 LPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403
Query: 1265 --DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGK-----VAELGSHSHLLKNNPDGCYAR 1317
D+A KT I +AHR+++I+ + I V ++ V G+H LL DG Y +
Sbjct: 1404 IKDKA--DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ-DGVYKK 1460
Query: 1318 MIQLQR 1323
++L +
Sbjct: 1461 YVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 442 bits (1139), Expect = e-141
Identities = 204/579 (35%), Positives = 325/579 (56%), Gaps = 15/579 (2%)
Query: 92 LFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAF 151
L R L Y L+ + L + + ++++ ++ + E+L+
Sbjct: 4 LRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-------LGELLELLL 56
Query: 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAI 211
L++ + G++ +R E L + +FD ++ D++ +
Sbjct: 57 LLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRL 115
Query: 212 NTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATS 271
D V + +S L + + + FS W+LAL+ L ++PL+A++ ++ A
Sbjct: 116 TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175
Query: 272 LAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAK 331
KL+ + +EAL + + +++ IRV+ AF E + L+ + A + +R ++ +
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235
Query: 332 GMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAF 391
+ + L+L GG+LV G A + ++ + Q +S
Sbjct: 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295
Query: 392 AKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSL 451
+A AA ++F ++D +P + + L G IE ++V FSYP + V L + S
Sbjct: 296 QRASAAAERLFELLDEEPEV---EDPPDPLKDTIGSIEFENVSFSYPGKKPV--LKDISF 350
Query: 452 TVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQ 511
++ G+ +A+VG SGSGKST++ L+ R YDPTSG++L+DG DI+ + L LR++IG+VSQ
Sbjct: 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 512 EPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571
+P LF+ TI+ENI LGRPDA EIEEA ++ANA+ FI LPDG+DT V ERGV LSGGQ
Sbjct: 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470
Query: 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKA 631
+QR+AIARA+L+NP IL+LDEATSALD+E+E L+Q+AL + + GRTTL+IAHRLSTI+ A
Sbjct: 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530
Query: 632 DVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
D + VL G + E GTH+EL+AK G+YA+L + Q A
Sbjct: 531 DRIIVLDNGRIVERGTHEELLAK--GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-132
Identities = 146/240 (60%), Positives = 184/240 (76%), Gaps = 2/240 (0%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E K+V F YPSRPD+PI + LSL GKT+ALVG SGCGKS+V++L++RFY+P+SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
++DG DIR NL+ LR + +V QEP LF TI ENI YG AT+ E+ EAA+ AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
FI SLPDGY T VGERG QLSGGQKQR+AIARA +R +I+LLDEATSALDAESE+ VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
ALDRA G+TTIV+AHRLSTIRNA +IAV+ +G+V E G+H L+ G YA++++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-131
Identities = 210/555 (37%), Positives = 308/555 (55%), Gaps = 11/555 (1%)
Query: 120 IFLRFFADLVNSFGSNVNNM-----DKMMQEVLKYAFYFLVVGAAIWA-SSWAEISCWMW 173
+ L A S V M K +L F FL+V A + A + A W
Sbjct: 25 VALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84
Query: 174 TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYL 233
GER +R ++ +FD R+ +VV + TD ++Q I L +
Sbjct: 85 LGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNA 143
Query: 234 ATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQT 293
+ G + F +L + L VPL+ + + + KL+ +SQ+ ++ AG+ +T
Sbjct: 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGET 203
Query: 294 VVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYG 353
+ IR V AF E + A++ A + + + +VF + +LW G
Sbjct: 204 LGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263
Query: 354 GYLVRH-HFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSID 412
+ V + G L +AVM+ G ++ + +A AA ++ ++ +P I
Sbjct: 264 AHDVIAGKMSAGTLGQFVFYAVMVAG-SIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322
Query: 413 RNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTV 472
+ + G IE + V+F+YP+RP+ L+ +LTV G+T+ALVG SG+GKST+
Sbjct: 323 APAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTL 382
Query: 473 VSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532
L+ RFYDP SG++LLDG D++ L LR ++ LV Q+P LFA ++ ENI GRPDA
Sbjct: 383 FQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDAT 442
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
E+E AAR A+A+ FI LP+G+DT + ERGV LSGGQ+QRIAIARA+LK+ ILLLDE
Sbjct: 443 DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE 502
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELI 652
ATSALD+ESE+LVQ+AL+ M GRTTL+IAHRL+T+ KAD + V+ QG + GTH ELI
Sbjct: 503 ATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI 562
Query: 653 AKGENGVYAKLIRMQ 667
AKG G+YA+L R+Q
Sbjct: 563 AKG--GLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 403 bits (1038), Expect = e-127
Identities = 188/581 (32%), Positives = 303/581 (52%), Gaps = 19/581 (3%)
Query: 743 SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKY 802
S RL K + + + + ++ L+ ++ I+ + E+ +
Sbjct: 2 SLLRRLLKYLKYKLLLLAI--LLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLEL 54
Query: 803 CYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIA 862
LL+ L+ + LQ +G+ + +R + +L+ +++FD+ +S +
Sbjct: 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLI 112
Query: 863 ARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQ 922
+RL D V + + + ++ + L++ + F L WRLAL+L+ + P++ L
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 923 KMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKG 982
+ S + A + E++ +R + AF +E + F + R
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 983 QIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT-L 1041
++ + L L +LV G + F++ ++ L +
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVG-ALAAFILYLLRLLTPILQLGEV 291
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
+ A +F+LLD + E+E D PD G +E ++V FSYP P+
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVE-DPPDPLKDTI---GSIEFENVSFSYP--GKKPVL 345
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+D+S G+ +A+VGPSG GKS++I L+ R Y+P+SG ++IDG DIR +L SLR+ +
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 1162 AIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
IV Q+P LF+ TI ENIA G AT+ EI EA +LANA +FI++LPDGY T VGERGV
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
LSGGQ+QR+AIARA +R I++LDEATSALD E+E +Q+AL + G+TT+++AHRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 1282 TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
TI+NA I V+D+G++ E G+H LL G YAR+ Q Q
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAKG--GLYARLYQAQ 564
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 384 bits (987), Expect = e-119
Identities = 184/499 (36%), Positives = 294/499 (58%), Gaps = 11/499 (2%)
Query: 827 VGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQN 886
+GE + +R + A ++ ++FD+ N S + +RL D ++S IG + + ++N
Sbjct: 85 LGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRN 142
Query: 887 TALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGE 946
+ + F+ +L +++ P+V+ +L ++ S + + + A AGE
Sbjct: 143 ALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGE 202
Query: 947 AIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWY 1006
+G +RTV AF E F ++ + + + ++ + LW
Sbjct: 203 TLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWV 262
Query: 1007 SSWLVKHG-ISDFSKTIRVFMVLMVSANGAAETLT-LAPDFIKGGRAMRSVFDLLDRKTE 1064
+ V G +S + T+ F+ V G+ TL+ + + + A + +LL + +
Sbjct: 263 GAHDVIAGKMS--AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPD 320
Query: 1065 IE-PDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123
I+ P P PVP LRGE+E + V+F+YP+RPD P L+L R G+T+ALVGPSG G
Sbjct: 321 IKAPAHPKTLPVP--LRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAG 378
Query: 1124 KSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH 1183
KS++ L+ RFY+P SGR+++DG D+R+ + LR MA+VPQ+P LFA+++ ENI YG
Sbjct: 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR 438
Query: 1184 ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243
AT+ E+ AAR A+A +FIS+LP+GY T++GERGV LSGGQ+QR+AIARA ++ A I+
Sbjct: 439 PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL 498
Query: 1244 LLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303
LLDEATSALDAESE+ VQ+AL+ G+TT+++AHRL+T+ A I V+D G++ G+H
Sbjct: 499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558
Query: 1304 SHLLKNNPDGCYARMIQLQ 1322
+ L+ G YAR+ +LQ
Sbjct: 559 AELIAKG--GLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 370 bits (952), Expect = e-119
Identities = 146/236 (61%), Positives = 184/236 (77%), Gaps = 3/236 (1%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E K+V F YP +L + SL +PAG+T+ALVG SGSGKST+V+LI RFYD SG++
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
L+DGHD++ L LR+QIGLVSQ+ LF T+ ENI GRP A E+EEAAR ANA+
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
FI++LP+G+DT + ERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD+ESE+LVQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
AL+R M RTT VIAHRLSTI AD + VL+ G + E GTH+EL+A+G GVYAKL
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG--GVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-119
Identities = 195/564 (34%), Positives = 298/564 (52%), Gaps = 21/564 (3%)
Query: 109 LGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168
+ + + L++ G + + L ++ G + S++
Sbjct: 21 VAMILVAATESTLAALLKPLLDD-GFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTY--- 76
Query: 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGN 228
W + +R++ E L V +FD + T ++ I D+ V A ++
Sbjct: 77 -LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIV 134
Query: 229 FIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGN 288
+ T + F V WQL L+ + ++P+++++ + L +++ + Q ++ Q
Sbjct: 135 LVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTT 194
Query: 289 IVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYAL 348
+ E+T+ RVV F G++ + + + +RL K A + T + + A+
Sbjct: 195 VAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAV 254
Query: 349 LLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSIS----AFAKAKVAAAKIFRI 404
+L ++ G L A + +AL + S++ + AA +F +
Sbjct: 255 VL----FIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTL 310
Query: 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGS 464
+D P D ++ G +E ++V F YP R + L++ SL + G+T+ALVG
Sbjct: 311 LDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGR 366
Query: 465 SGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI 524
SGSGKST+V+LI RFY+P SGQ+LLDGHD+ L LR+Q+ LVSQ+ LF TI NI
Sbjct: 367 SGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426
Query: 525 LLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583
GR AD EIE A A A F+ KLP G DT + E GV LSGGQ+QR+AIARA+LK
Sbjct: 427 AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
+ IL+LDEATSALD+ESE+LVQ AL+R M GRTTLVIAHRLSTI KAD + V+ G +
Sbjct: 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546
Query: 644 EIGTHDELIAKGENGVYAKLIRMQ 667
E GTH+EL+A+ NG+YA+L MQ
Sbjct: 547 ERGTHNELLAR--NGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-117
Identities = 180/495 (36%), Positives = 282/495 (56%), Gaps = 7/495 (1%)
Query: 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNF 229
+ +T R ++++R + L QD+ +FD E +T ++ +++D + ++S +
Sbjct: 224 SFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDTQTMSRSLSLNVNVL 282
Query: 230 IHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI 289
+ L + +L +VTL +PL+ + + L+ + QEA+++A +
Sbjct: 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQV 342
Query: 290 VEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALL 349
E+ + +R V +F E + AL+ +L + A L T + L+
Sbjct: 343 AEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLV 402
Query: 350 LWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKP 409
L+YGG LV + G ++ + G A+ + S +A A+ K+F +D KP
Sbjct: 403 LYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462
Query: 410 SIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGK 469
+I L ++ GLIE + V FSYP+RP+V +L + T+ G+ +ALVG SGSGK
Sbjct: 463 NIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGK 520
Query: 470 STVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP 529
STV +L++ Y PT GQVLLDG + +L +Q+ LV QEP LF+ +++ENI G
Sbjct: 521 STVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT 580
Query: 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
D EI AA+ ANA+ FI++ P+G+DT+V E+G QLSGGQKQRIAIARA+++ P +L+
Sbjct: 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
LDEATSALD+E E+L+QE R RT L+IAHRLST+ +AD + VL++GSV E+GTH
Sbjct: 641 LDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698
Query: 650 ELIAKGENGVYAKLI 664
+L+ G Y L+
Sbjct: 699 QLMEDQ--GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 379 bits (975), Expect = e-116
Identities = 197/597 (32%), Positives = 318/597 (53%), Gaps = 31/597 (5%)
Query: 734 EKLAFKEQASS---FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNP 790
EK A + Q+ + +RL ++ +W + + V + F + ++
Sbjct: 135 EKEAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGG- 193
Query: 791 DHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAW 850
D +A + + LS A + L+ ++ + R+RE + ++L+ ++ +
Sbjct: 194 DKGP--PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGF 251
Query: 851 FDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQ--WRLALV- 907
FD EN++ + +RL+ D + ++ + V+++N L+++ GF+L RL +V
Sbjct: 252 FD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRN--LVMLLGLLGFMLWLSPRLTMVT 307
Query: 908 LIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLF 967
LI + V +A V K + S +++ A +KA Q+A EA+ +RTV +F +E
Sbjct: 308 LINLPLVFLAEKVFGK-RYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAE----EGE 362
Query: 968 SSNLQTPLRRCF---WKGQIAGSGY-GVAQFCLYASYALGLWYSSWLVKHGISDFSKTIR 1023
+S + L + +A +GY L L+Y LV G S +
Sbjct: 363 ASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVS-SGNLV 421
Query: 1024 VFMVLMVSANGAAETL-TLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGE 1082
F++ A L + ++ A VF+ LDRK I T P L G
Sbjct: 422 SFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GTLAPLNLEGL 478
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E + V FSYP+RPD+P+ + L+ G+ +ALVGPSG GKS+V AL+Q Y+P+ G+V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
++DG + +Y+ L R +A+V QEP LF+ ++ ENIAYG + EI+ AA+ ANA
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
FI P+GY T VGE+G QLSGGQKQR+AIARA VRK +++LDEATSALDAE E+ +QE
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319
R+ + +T +++AHRLST+ A I V+ G V E+G+H L+++ GCY ++
Sbjct: 659 --SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ--GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = e-109
Identities = 132/236 (55%), Positives = 169/236 (71%), Gaps = 3/236 (1%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
VE K+V F YP P+ RD+SL AG+T+ALVGPSG GKS+++ L+ RFY+ SGR+
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
+IDG D+R Y L SLRR + +V Q+ LF T+ ENIAYG AT E+ EAAR ANA +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
FI LP+GY T +GERGV+LSGGQ+QR+AIARA ++ I++LDEATSALD ESER VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
AL+R +TT V+AHRLSTI NA I V++DGK+ E G+H LL G YA++
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG--GVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-108
Identities = 195/586 (33%), Positives = 307/586 (52%), Gaps = 25/586 (4%)
Query: 744 SFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYC 803
+F RL P ++ V ++ + + A +L ++ D + R+ +
Sbjct: 1 TFRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLL------DDGFGGRDRSVLW 54
Query: 804 YL---LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESAR 860
++ +IGL+ + + + V + + +R +M +L +++FD +
Sbjct: 55 WVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGT 112
Query: 861 IAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVV-VAAT 919
+ +R+ D+ V SA D V+V+ T ++ W+L L+++ + PV+ +
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 920 VLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCF 979
+ K + S +++ + + T +A E + R V F + F + RR
Sbjct: 173 RVSKRL-RRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNR-NRRLA 230
Query: 980 WKGQIAGSGYG-VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAET 1038
K AGS + Q + A+ L+ + + + G S + F+ M++ ++
Sbjct: 231 MKMTSAGSISSPITQLIASLALAVVLFIALFQAQAG-SLTAGDFTAFITAMIALIRPLKS 289
Query: 1039 LT-LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPD 1097
LT + +G A S+F LLD + E D T +R RG+VE ++V F YP R D
Sbjct: 290 LTNVNAPMQRGLAAAESLFTLLD--SPPEKDT--GTRAIERARGDVEFRNVTFRYPGR-D 344
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL 1157
P +SL G+T+ALVG SG GKS+++ L+ RFYEP SG++++DG D+ Y L SL
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 1158 RRHMAIVPQEPCLFASTIYENIAYGH-ESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
RR +A+V Q+ LF TI NIAYG E A +EI A A A F+ LP G T +G
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVV 1276
E GV LSGGQ+QR+AIARA ++ A I++LDEATSALD ESER VQ AL+R G+TT+V+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524
Query: 1277 AHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
AHRLSTI A I V+DDG++ E G+H+ LL N G YA++ +Q
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNELLARN--GLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 356 bits (915), Expect = e-107
Identities = 178/505 (35%), Positives = 280/505 (55%), Gaps = 26/505 (5%)
Query: 174 TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYL 233
G+R +++ ++ L + YF+ +++ + + +++ ++ G+ + +
Sbjct: 221 LGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLT---GSILTLI 275
Query: 234 ATFVTGFAVGFSAV-----WQLALVTLAVVPLIAVIGAIHATSLAKLAGKS-QEALSQAG 287
+ FA+ F AV W+L L+ LA +PL +I I L + K +E+ Q
Sbjct: 276 IDLL--FALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQS 333
Query: 288 NIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYA 347
+VE T+ I V A E + + + L +G+K+ + + S
Sbjct: 334 FLVE-TIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392
Query: 348 LLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSIS----AFAKAKVAAAKIFR 403
L+LW+G LV G L + + A + +S F +AKVA ++
Sbjct: 393 LILWFGAILV----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD 448
Query: 404 IIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVG 463
I+D P + ++ + L + G IE ++V F Y +L + SL +P G+ +A+VG
Sbjct: 449 ILDTPPEQE-GDKTLIHLPKLQGEIEFENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVG 506
Query: 464 SSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKEN 523
SGSGKST++ L+ Y P G++LLDG D+ + L LR+Q+G V Q+P LF+ +I+EN
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566
Query: 524 ILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583
I LG P+A EI EAA++A A+ FI LP G+DT V E G LSGGQ+QR+A+ARA+L
Sbjct: 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
P ILLLDEATSALD E+E ++ + L + + GRT ++IAHRLSTIR AD + VL QG +
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686
Query: 644 EIGTHDELIAKGENGVYAKLIRMQE 668
E G+H+EL+A+G G+YA+L + QE
Sbjct: 687 EQGSHEELLAQG--GLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 331 bits (851), Expect = e-105
Identities = 125/240 (52%), Positives = 164/240 (68%), Gaps = 4/240 (1%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E ++V F+Y P P+ +D+S AGK +A+VGPSG GKS+++ L+ RFY+ SSG +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
+IDG+DIR+ L SLRR + +VPQ+ LF TI NI YG AT+ E+IEAA+ A
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
I PDGY T VGERG++LSGG+KQRVAIARA ++ I+LLDEATSALD +ER +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
AL G+TTIV+AHRLSTI NA I V+ DG++ E G+H LL G YA M + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL--AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-104
Identities = 131/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE ++V F+Y P +L + S T+PAGK +A+VG SGSGKST++ L+ RFYD +SG +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
L+DG DI+ + L LR+ IG+V Q+ LF TI NI GRPDA E+ EAA+ A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
I++ PDG+DT V ERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD+ +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
AL GRTT+VIAHRLSTI AD + VL+ G + E GTH+EL+AKG G+YA++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG--GLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-101
Identities = 119/230 (51%), Positives = 173/230 (75%), Gaps = 2/230 (0%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
G IE ++V+FSY + +L + + ++ G+T+A+VG +G+GK+T+++L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANA 545
Q+L+DG DI+ + + LR IG+V Q+ LF+ TI ENI LGRP+A E+ EAA+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ FI+KLP+G+DT + E G LS G++Q +AIARAML++P IL+LDEATS +D+E+EKL+
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKG 655
QEAL++ M GRT+++IAHRLSTI+ AD + VL G + E GTHDEL+AK
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (858), Expect = e-101
Identities = 195/548 (35%), Positives = 294/548 (53%), Gaps = 28/548 (5%)
Query: 128 LVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIW--ASSWAEISCWMWTGERQSIKMRIK 185
L + FG ++ K M +V+G I +S+ C W + + MR +
Sbjct: 52 LDDGFGKADRSVLKWMP--------LVVIGLMILRGITSFISSYCISWVSGKVVMTMRRR 103
Query: 186 YLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245
+ V +FD + T ++ I D+ V + S L + A+ + F + F
Sbjct: 104 LFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162
Query: 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVG 305
WQL+L+ + + P++++ + + ++ Q + Q EQ + + V F G
Sbjct: 163 YSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG 222
Query: 306 ---ESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGY-LVRHHF 361
E+K S+ ++ + G K A + + + A +L+ + V
Sbjct: 223 QEVETKRFDKVSNRMR---QQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTL 279
Query: 362 TNGGLAIATMFAVMIGGLALAQAAPSISA-FAKAKVAAAKIFRIIDHKPSIDRNSESGLE 420
T G I +F+ MI + ++ +++A F + A +F I+D + D E
Sbjct: 280 TAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD---EGKRV 334
Query: 421 LDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480
++ G IE ++V F+YP + EV L N + +PAGKT+ALVG SGSGKST+ +L+ RFY
Sbjct: 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393
Query: 481 DPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA-DLNEIEEA 539
D G++LLDGHD++ L LR Q+ LVSQ LF TI NI R + +IEEA
Sbjct: 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEA 453
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
AR+A A FI K+ +G DT + E GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD+
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 600 ESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
ESE+ +Q ALD RT+LVIAHRLSTI KAD + V++ G + E GTH EL+A+ NGV
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ--NGV 571
Query: 660 YAKLIRMQ 667
YA+L +MQ
Sbjct: 572 YAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = 2e-96
Identities = 181/536 (33%), Positives = 280/536 (52%), Gaps = 37/536 (6%)
Query: 804 YLLIGLSSA---ELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESAR 860
L IGL A E L L+ +G+ L + + +L+ +++F E+
Sbjct: 195 VLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGE 252
Query: 861 IAARLALDANNVRSAI-GDRIQVIVQNTALMLVACTAGFVL---QWRLALVLIAVFPVVV 916
I +R+ + +R + G + +I+ +L A V+ W+L L+++A P+ V
Sbjct: 253 IISRVR-ELEQIREFLTGSILTLIID----LLFALIFLAVMFLYSWKLTLIVLAAIPLNV 307
Query: 917 AATVLQKMFMKGFSGD-MEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975
T++ + ++ + +E + + + L E I + TV A +E F S L
Sbjct: 308 LITLIFQPLLRRKTRKLIEESAEQQSFLV-ETIKGIETVKALAAE----PRFRSQWDNRL 362
Query: 976 RRCF---WKGQIAGSGYGV-AQFCLYASYALGLWYSSWLVKHGISDFSKTI-RVFMVLMV 1030
+ +K + S L LW+ + LV G T+ ++ M+
Sbjct: 363 AKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEG----ELTLGQLVAFNML 418
Query: 1031 SANGAAETLTLA---PDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKH 1087
+ + L+ DF + A+ + D+LD E E D +L+GE+E ++
Sbjct: 419 AGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTL--IHLPKLQGEIEFEN 476
Query: 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147
V F Y P+ DLSL G+ +A+VG SG GKS+++ L+ Y+P GR+++DG
Sbjct: 477 VSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535
Query: 1148 DIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSL 1207
D+ +L SLRR + V Q+P LF+ +I ENIA G+ AT+ EIIEAA+LA A +FI +L
Sbjct: 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL 595
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
P GY T VGE G LSGGQ+QR+A+ARA + K +I+LLDEATSALD E+E + + L +
Sbjct: 596 PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655
Query: 1268 CSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
G+T I++AHRLSTIR+A I V+D GK+ E GSH LL G YAR+ Q Q
Sbjct: 656 LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL--AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (817), Expect = 3e-95
Identities = 170/460 (36%), Positives = 250/460 (54%), Gaps = 38/460 (8%)
Query: 226 LGNFIHYLATFVTGFA---VGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEA 282
L +LAT V + W+L+LV + L V I + K
Sbjct: 131 LEFMREHLATLVALVVLLPLALFMNWRLSLVLVV---LGIVYTLITTLVMRKTKDGQAAV 187
Query: 283 LSQAGNIVEQ---TVVQIRVVFAFV---GESKALQAYSSALKVAQR--LGYKSGFAKGMG 334
++ + + VV ++ E++AL+ + L AQ L + A +
Sbjct: 188 EEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW-WALASVLN 246
Query: 335 LGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATM-FA-VMIGGLALAQAAPSISAFA 392
A+ + L G LV+ G +A + FA ++IG L + AF
Sbjct: 247 RAASTITMLAILVL----GAALVQKGQLRVGEVVAFVGFATLLIGRLDQ------VVAFI 296
Query: 393 -KAKVAAAKI---FRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYP-SRPEVRILN 447
+ +AA K+ F + D P + R+ ++L V G +E V FSY SR V
Sbjct: 297 NQVFMAAPKLEEFFEVEDAVPDV-RDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVE--- 352
Query: 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507
+ S G+T+A+VG +G+GKST+++L++R +DP SG++L+DG DI+++ LR+ I
Sbjct: 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567
+V Q+ LF +I++NI +GRPDA E+ AA A A+ FI + PDG+DT V ERG QL
Sbjct: 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472
Query: 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLST 627
SGG++QR+AIARA+LK+P IL+LDEATSALD E+E V+ ALD M GRTT +IAHRLST
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLST 532
Query: 628 IRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
+R AD + V G V E G+ DEL+A+G G +A L+R Q
Sbjct: 533 VRNADRILVFDNGRVVESGSFDELVARG--GRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 302 bits (777), Expect = 2e-94
Identities = 111/230 (48%), Positives = 164/230 (71%), Gaps = 2/230 (0%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
GE+E ++V+FSY P+ +D++ + G+T+A+VGP+G GK+++I L+ RFY+P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANA 1200
+++IDG DIR + KSLR + +V Q+ LF+ TI ENI G +AT+ E+IEAA+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FI LP+GY T +GE G LS G++Q +AIARA +R +I++LDEATS +D E+E+ +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
QEAL++ G+T+I++AHRLSTI+NA I V+DDGK+ E G+H LL
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 3e-92
Identities = 158/428 (36%), Positives = 227/428 (53%), Gaps = 32/428 (7%)
Query: 897 GFVLQWRLALVLI--AVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTV 954
+ WRL+LVL+ + ++ V++K K +E + +AIGNV V
Sbjct: 151 ALFMNWRLSLVLVVLGIVYTLITTLVMRKT--KDGQAAVEEHYHDLFAHVSDAIGNVSVV 208
Query: 955 AAFN---SELMIVGLFSSNL---QTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSS 1008
++N +E + + NL Q P+ W + + + A LG
Sbjct: 209 QSYNRIEAETQALRDIADNLLAAQMPVLS--WWALASVLNRAASTITMLAILVLGAA--- 263
Query: 1009 WLVKHGISDFSKTIRVFMVLM-VS-ANGAAETLTLAPDFIKG---GRA-MRSVFDLLDRK 1062
LV+ G +RV V+ V A L FI + F++ D
Sbjct: 264 -LVQKG------QLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316
Query: 1063 TEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGC 1122
++ D P A + R++G VE V FSY + D+S A+ G+T+A+VGP+G
Sbjct: 317 PDVR-DPPGAIDLG-RVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372
Query: 1123 GKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG 1182
GKS++I L+QR ++P SGR++IDG DIR SLRR++A+V Q+ LF +I +NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 1183 HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
AT+ E+ AA A A FI PDGY T VGERG QLSGG++QR+AIARA ++ I
Sbjct: 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
++LDEATSALD E+E V+ ALD G+TT ++AHRLST+RNA I V D+G+V E GS
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552
Query: 1303 HSHLLKNN 1310
L+
Sbjct: 553 FDELVARG 560
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 2e-88
Identities = 174/484 (35%), Positives = 280/484 (57%), Gaps = 26/484 (5%)
Query: 848 IAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALV 907
+++FD+ + + +R+ D+ V S+ + +V+ A ++ F W+L+L+
Sbjct: 113 VSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170
Query: 908 LIAVFPVV-VAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGL 966
LI + P+V +A V+ K F S +M+ + T A + + + V F + +
Sbjct: 171 LIVIAPIVSIAIRVVSKRFRN-ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229
Query: 967 FS--SNLQTPLRRCFWKGQIAGS-GYGVAQFCLYASYALG--LWYSSW-LVKHGISDFSK 1020
F SN +R+ K A S + Q L AS AL L+ +S+ V ++ +
Sbjct: 230 FDKVSN---RMRQQGMKMVSASSISDPIIQ--LIASLALAFVLYAASFPSVMDTLT--AG 282
Query: 1021 TIRVFMVLMVSANGAAETLT-LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRL 1079
TI V M++ ++LT + F +G A +++F +LD + E + + V +R
Sbjct: 283 TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD----EGKRVIERA 338
Query: 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
+G++E ++V F+YP + ++P R+++ + AGKT+ALVG SG GKS++ L+ RFY+
Sbjct: 339 KGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE 397
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-HESATESEIIEAARLA 1198
G +++DG D+R Y L SLR +A+V Q LF TI NIAY E + +I EAAR+A
Sbjct: 398 GEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMA 457
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
A FI+ + +G T +GE GV LSGGQ+QR+AIARA +R + I++LDEATSALD ESER
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
++Q ALD +T++V+AHRLSTI A I V++DG++ E G+H+ LL N G YA++
Sbjct: 518 AIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN--GVYAQL 575
Query: 1319 IQLQ 1322
++Q
Sbjct: 576 HKMQ 579
|
Length = 582 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 7e-87
Identities = 169/458 (36%), Positives = 232/458 (50%), Gaps = 61/458 (13%)
Query: 889 LMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAI 948
+ LVA V W AL + + + TV+ + F M A S A A +++
Sbjct: 70 ISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSL 129
Query: 949 GNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYS- 1007
N TV F +E + L+T Y A+ + S
Sbjct: 130 LNFETVKYFGNEEYEAVRYDHALET-----------------------YEKAAIKVHVSL 166
Query: 1008 SWL--VKHGISDFSKTIRVFMVLMVSANGAAE-TLTLAPDFI------------------ 1046
L + I FS +RV M + SA G E LT+ D +
Sbjct: 167 LVLNFGQTAI--FSTGLRVMMTM--SALGVEEGQLTV-GDLVNVNALLFQLSIPLNFLGF 221
Query: 1047 ------KGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPI 1100
+ M +FDLLD + E+ D PDA P+ G V +V F+Y P PI
Sbjct: 222 SYREIRQALTDMEKMFDLLDVEAEVS-DAPDAPPLWPVRLGAVAFINVSFAY--DPRRPI 278
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
+S GKT+A+VG SG GKS+++ L+ RFY+ +SG + IDG+DIR +SLRR
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGV 1220
+ IVPQ+ LF TI NI YG AT E+ AA A FI SLP+GY T VGERG+
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
+LSGG+KQRVAIAR ++ I++LDEATSALD +E+++Q AL +G+TT+V+AHRL
Sbjct: 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRL 458
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
STI +A I V+D+G++ E G+H LL G YA M
Sbjct: 459 STIIDADEIIVLDNGRIVERGTHEELLAAG--GLYAEM 494
|
Length = 497 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = 3e-86
Identities = 176/559 (31%), Positives = 278/559 (49%), Gaps = 26/559 (4%)
Query: 120 IFLRFFADLVNSFGSNVNNMDKM-----MQEVLKYAFYFLVVGAAIWASSWAEISCWMW- 173
+ L+ FA + V +DK+ + + A L V AI+ + + +++
Sbjct: 149 LALQLFALVTPLLFQVV--IDKVLVHRGLSTLSVLALAMLAV--AIFEPALGGLRTYLFA 204
Query: 174 -TGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHY 232
R +++ + L + YF++ R D V + I L +
Sbjct: 205 HLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARVRELEQIRNFLTGSALTVVLDL 263
Query: 233 LATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQ 292
L V AV F L V + + A++ L K E + A + + +
Sbjct: 264 LFVVVF-LAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVE 322
Query: 293 TVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWY 352
+V I + A E + + L ++ + A + ++A+LLW+
Sbjct: 323 SVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWF 382
Query: 353 GGYLV-RHHFTNGGLAIATMFAVMIGG--LALAQAAPSISAFAKAKVAAAKIFRIIDHKP 409
G +LV + G L M A + L LAQ F + +A ++ I++ P
Sbjct: 383 GAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQD---FQQTGIALERLGDILNS-P 438
Query: 410 SIDRNSESGLELDSVSGLIELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALVGSSGSG 468
+ + S L + G I +++ F Y P PEV L+N +L + G+ I +VG SGSG
Sbjct: 439 T-EPRSAGLAALPELRGAITFENIRFRYAPDSPEV--LSNLNLDIKPGEFIGIVGPSGSG 495
Query: 469 KSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGR 528
KST+ L++R Y P GQVL+DG D+ WLR+Q+G+V QE LF+ +I++NI L
Sbjct: 496 KSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN 555
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAIL 588
P A + AA++A A+ FI +LP G++T+V E+G LSGGQ+QRIAIARA++ NP IL
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 589 LLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648
+ DEATSALD ESE L+ + GRT ++IAHRLST+R D + VL++G ++E G H
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675
Query: 649 DELIAKGENGVYAKLIRMQ 667
+EL+A G+YA+L + Q
Sbjct: 676 EELLALQ--GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 5e-86
Identities = 120/241 (49%), Positives = 168/241 (69%), Gaps = 5/241 (2%)
Query: 428 IELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
I +HV F Y P P IL+N SL + G+ + +VG SGSGKST+ LI+RFY P +G+
Sbjct: 1 ITFEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
VL+DGHD+ WLR+Q+G+V QE LF +I++NI L P + + EAA++A A+
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
FI +LP+G+DT V E+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666
+ GRT ++IAHRLST++ AD + V+++G + E G+HDEL+A+ NG+YA L ++
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQL 236
Query: 667 Q 667
Q
Sbjct: 237 Q 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 272 bits (699), Expect = 2e-84
Identities = 101/213 (47%), Positives = 131/213 (61%), Gaps = 43/213 (20%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE K+V FSYP RP+ +L + SLT+ G+ +A+VG SGSGKST++ L+ R YDPTSG++
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
L+DG D++ L L LR+ I V Q+P LF+ TI+ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
LSGGQ+QRIAIARA+L++P IL+LDEATSALD E+E L+ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQG 640
AL G+T +VIAHRLSTIR AD + VL G
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 3e-82
Identities = 114/221 (51%), Positives = 161/221 (72%)
Query: 422 DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD 481
D + G+++ ++V F+YP+RP+ +L + S T+ G+ ALVG SGSGKSTVV+L+E FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 482 PTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAAR 541
P GQVLLDG I + ++L ++ LV QEP LFA ++++NI G ++EAA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
A+A+SFI +L G+DT+V E+G QLSGGQKQR+AIARA+++NP +L+LDEATSALD+ES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 602 EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
E+ VQ+AL + RT LVIAHRLST+ +AD + VL G +
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 3e-82
Identities = 115/222 (51%), Positives = 160/222 (72%)
Query: 1076 PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135
PD L+G V+ ++V F+YP+RPD + +D+S G+ ALVGPSG GKS+V+AL++ FY
Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAA 1195
+P G+V++DGK I +Y K L +++V QEP LFA ++ +NIAYG +S + + EAA
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAA 124
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
+ A+A FIS L GY T VGE+G QLSGGQKQRVAIARA +R ++++LDEATSALDAE
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 1256 SERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
SE+ VQ+AL +T +V+AHRLST+ A I V+D G++
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 2e-81
Identities = 152/368 (41%), Positives = 209/368 (56%), Gaps = 29/368 (7%)
Query: 308 KALQAY-SSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGL 366
AL+ Y +A+KV L + + T V + + L + T G L
Sbjct: 150 HALETYEKAAIKVHVSLLVLNFGQTAIFS--TGLRVMMTMSALG-----VEEGQLTVGDL 202
Query: 367 AIATMFAVMIGGLALAQAAP------SISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLE 420
V + L + P S +A K+F ++D + + ++
Sbjct: 203 -------VNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS-DAPDAPP 254
Query: 421 LDSVS-GLIELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
L V G + +V F+Y P RP ILN S T+P GKT+A+VG SG+GKST++ L+ R
Sbjct: 255 LWPVRLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR 311
Query: 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEE 538
FYD SG + +DG DI+ + + LR+ IG+V Q+ LF TI NI GRPDA E+
Sbjct: 312 FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGA 371
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
AA A + FI LP+G+DT V ERG++LSGG+KQR+AIAR +LKNP IL+LDEATSALD
Sbjct: 372 AAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658
+ +E+ +Q AL GRTTLVIAHRLSTI AD + VL G + E GTH+EL+A G G
Sbjct: 432 THTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG--G 489
Query: 659 VYAKLIRM 666
+YA++ R
Sbjct: 490 LYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 4e-80
Identities = 114/241 (47%), Positives = 159/241 (65%), Gaps = 5/241 (2%)
Query: 1083 VELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ +HV F Y +PD P I ++SLR + G+ + +VG SG GKS++ L+QRFY P +GR
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANAD 1201
V++DG D+ + LRR + +V QE LF +I +NIA + +IEAA+LA A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
FIS LP+GY T VGE+G LSGGQ+QR+AIARA + I++ DEATSALD ESE ++
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
+ C+G+T I++AHRLST++NA I V++ G++ E GSH LL N G YA + QL
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN--GLYAYLYQL 236
Query: 1322 Q 1322
Q
Sbjct: 237 Q 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 7e-80
Identities = 148/423 (34%), Positives = 219/423 (51%), Gaps = 22/423 (5%)
Query: 905 ALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIV 964
+LV A+ V V +L+K F + AT E++ + T+ A +E
Sbjct: 287 SLVCYALLSVFVGP-ILRKRVEDKFERS-----AAATSFLVESVTGIETIKATATEPQFQ 340
Query: 965 GLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRV 1024
+ L + F + + ++A+ LW+ + LV G + +
Sbjct: 341 NRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGG----ALSPGQ 396
Query: 1025 FMVL-MVSANGAAETLTLAP---DFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLR 1080
+ M++ L LA DF + G A+ + D+L+ TE A P LR
Sbjct: 397 LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE---LR 453
Query: 1081 GEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
G + +++ F Y PD P + +L+L + G+ + +VGPSG GKS++ L+QR Y P
Sbjct: 454 GAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLAN 1199
G+V++DG D+ + LRR M +V QE LF+ +I +NIA + A +I AA+LA
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAG 571
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
A FIS LP GY T VGE+G LSGGQ+QR+AIARA V I++ DEATSALD ESE
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 1260 VQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319
+ + C G+T I++AHRLST+R I V++ G++AE G H LL G YAR+
Sbjct: 632 IMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ--GLYARLW 689
Query: 1320 QLQ 1322
Q Q
Sbjct: 690 QQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-78
Identities = 97/214 (45%), Positives = 133/214 (62%), Gaps = 43/214 (20%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E K+V FSYP RP P+ +D+SL + G+ +A+VGPSG GKS+++ L+ R Y+P+SG +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
+IDG D+R +L+SLR+++A VPQ+P LF+ TI ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
LSGGQ+QR+AIARA +R I++LDEATSALD E+E + E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGK 1296
AL GKT IV+AHRLSTIR+A I V+DDG+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 1e-76
Identities = 149/425 (35%), Positives = 228/425 (53%), Gaps = 17/425 (4%)
Query: 240 FAVGFSAV-----WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQA-GNIVEQT 293
FA+ F V L V L +PLI + G + L++LA +S +Q +VE +
Sbjct: 272 FALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-S 330
Query: 294 VVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYG 353
+ + + A E + + + + R G KS F + F+ ++ G
Sbjct: 331 LSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390
Query: 354 GYLVRH-HFTNGGLAIATMFAVMIGGLALA---QAAPSISAFAKAKVAAAKIFRIIDHKP 409
YL+ T GGL IA VM+ G ALA Q A ++ + +AK A + ++ P
Sbjct: 391 VYLISDGELTMGGL-IA---CVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ-LP 445
Query: 410 SIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGK 469
L + G IE ++V F+YP + E L+N SLT+ G+ +A++G GSGK
Sbjct: 446 VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGK 504
Query: 470 STVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP 529
ST++ L+ Y PT G VLLDG DI+ + LR+ IG V Q+P LF T+++NI LG P
Sbjct: 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP 564
Query: 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
AD EI AA +A F+ + PDG D Q+ ERG LSGGQ+Q +A+ARA+L++P ILL
Sbjct: 565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL 624
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
LDE TSA+D+ SE+ ++ L R++ G+T +++ HR S + D + V+ G + G D
Sbjct: 625 LDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684
Query: 650 ELIAK 654
+++
Sbjct: 685 QVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 2e-74
Identities = 147/465 (31%), Positives = 219/465 (47%), Gaps = 61/465 (13%)
Query: 233 LATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI--- 289
+ + A+ F W AL+ L PLI + + + + K AL++
Sbjct: 126 IVPLLILIAIFFFN-WAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLD 184
Query: 290 -------------VEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFA------ 330
E T +IR + + + V R+ + S
Sbjct: 185 RLRGLETLRAFGRTEATEERIR--------KDSEDFRKATMSVL-RIAFLSSAVLEFFAY 235
Query: 331 KGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAP--SI 388
+ L A Y G L + V+I LA P +
Sbjct: 236 LSIALVAVYIGF----------------RLLGEGDLTLFAGLFVLI--LAPEFFQPLRDL 277
Query: 389 SAF---AKAKVAAA-KIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVR 444
+F A A AAA K+F +++ + + E + I L+++ F YP
Sbjct: 278 GSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--P 335
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
L++ +LT+ AG+ ALVG+SG+GKST+++L+ F PT G++ ++G D++ L R+
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
QI VSQ P LFA TI+ENILL RPDA EI A A F+ PDG DT + E G
Sbjct: 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGG 454
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHR 624
LSGGQ QR+A+ARA+L ++LLLDE T+ LD+E+E+++ +AL +T LVI HR
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
Query: 625 LSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEA 669
L AD + VL G + E GTH+EL + G+YA L++ QE
Sbjct: 515 LEDAADADRIVVLDNGRLVEQGTHEELSE--KQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 3e-74
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 1/215 (0%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
G IE ++V FSYP++ L+N SLT+ AG+ +A++G GSGKST++ L+ Y PTSG
Sbjct: 1 GRIEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANA 545
VLLDG DI+ L LR+ IG V Q+ LF T+++NI LG P AD I AA +A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
F+ K P+G D Q+ ERG LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQG 640
+E L + + +T ++I HR S + D + V+ G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 2e-73
Identities = 165/452 (36%), Positives = 249/452 (55%), Gaps = 38/452 (8%)
Query: 232 YLATFVTGF---AVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGN 288
+LATFV F F+ W+L++V + + L +I + +
Sbjct: 137 HLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFK 196
Query: 289 IVEQTVVQIRVVFAF---VGESKALQAYSSALKVAQR--LGYKSGFAKGMGLGATYFVVF 343
V ++ + VV ++ E+ AL+ +++ L AQ L + + A G+ A+ +
Sbjct: 197 HVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA-LASGLNRMASTISMM 255
Query: 344 CSYALLLWYGGYLVRHHFTNGGLAIATMFA------VMIGGLALAQAAPSISAFAKAKVA 397
C +L G LV G L++ + A ++IG L +S F
Sbjct: 256 C----ILVIGTVLVI----KGELSVGEVIAFIGFANLLIGRL------DQMSGFITQIFE 301
Query: 398 A-AKIFRIIDHKPSIDRNSESG--LELDSVSGLIELKHVDFSYP-SRPEVRILNNFSLTV 453
A AK+ D + S+ + E EL +V G +E +H+ F + S V + S
Sbjct: 302 ARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVF---DVSFEA 358
Query: 454 PAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEP 513
AG+T+A+VG +G+GK+T+++L++R YDPT GQ+L+DG DI ++ LR+ I V Q+
Sbjct: 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA 418
Query: 514 ALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573
LF +I+ENI LGR A E+ EAA+ A A+ FI+K +G+DT V ERG +LSGG++Q
Sbjct: 419 GLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478
Query: 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADV 633
R+AIARA+LKN IL+LDEATSALD E+E V+ A+D RTT +IAHRLST+R AD+
Sbjct: 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADL 538
Query: 634 VAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
V L QG + E G+ ELI K +G + KL+R
Sbjct: 539 VLFLDQGRLIEKGSFQELIQK--DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 9e-72
Identities = 145/455 (31%), Positives = 224/455 (49%), Gaps = 37/455 (8%)
Query: 233 LATFVTG-FAVGFSAV------WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQ 285
LAT + F A+ L L+ +A + + + + + Q+ +
Sbjct: 271 LATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGK 330
Query: 286 AGNIVEQTVVQIRVVFAFVGES----KALQAYSSALKVAQRLGYKSGFAKGMGLGATYFV 341
+ + I + A ES + + L Q LG + +G+ T
Sbjct: 331 LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI---LGVLPTLLT 387
Query: 342 VFCSYALLLWYGGYLV-RHHFTNGGL----AIATMFAVMIGGL-ALAQAAPSISAFAK-- 393
+ AL+L GG V T G L ++ + F + L +
Sbjct: 388 SL-NSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRL 446
Query: 394 AKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTV 453
V + +++ + + SE L SG +EL+++ F Y S E ++ NFSLT+
Sbjct: 447 DDVLRNPVDPLLEEEEAPAAGSEPSPRL---SGYVELRNITFGY-SPLEPPLIENFSLTL 502
Query: 454 PAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEP 513
G+ +ALVG SGSGKST+ L+ Y P SG++L DG + + L + +V Q+
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI 562
Query: 514 ALFATTIKENILL---GRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570
LF T+++N+ L PDADL A + A + I P G+D ++ E G LSGG
Sbjct: 563 FLFEGTVRDNLTLWDPTIPDADL---VRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619
Query: 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK 630
Q+QR+ IARA+++NP+IL+LDEATSALD E+EK++ + L R G T +++AHRLSTIR
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRD 677
Query: 631 ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
D + VL++G V + GTH+EL A G G YA+LIR
Sbjct: 678 CDEIIVLERGKVVQRGTHEELWAVG--GAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 4e-70
Identities = 90/217 (41%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
G +E ++V FSYP++ IP ++SL RAG+ +A++G G GKS+++ L+ Y+P+SG
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANA 1200
V++DG DIR+ + LRR++ VPQ+ LF T+ +NI G A + I+ AA LA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
F++ P+G +GERG LSGGQ+Q VA+ARA + I+LLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
+E L + KT I++ HR S + I V+D G++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 9e-69
Identities = 144/419 (34%), Positives = 193/419 (46%), Gaps = 48/419 (11%)
Query: 241 AVGFSAVWQLALVTLAVVPLI----AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQ 296
A F W L+ L PLI +IG A A K ALS+ +
Sbjct: 137 AAVFPQDWISGLILLLTAPLIPIFMILIG--WAA--QAAARKQWAALSRLSGHFLDRLRG 192
Query: 297 IRVVFAFVGESKA----LQAYSSALKVAQ----RLGYKSGFAKGMGLGATYFV----VFC 344
+ + F G +KA ++ S + R+ + S + L AT V V+
Sbjct: 193 LPTLKLF-GRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAV--LELFATLSVALVAVYI 249
Query: 345 SYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLA------LAQAAPSISAFAKAKVAA 398
+ LL G L +AT V++ LA L Q A A AA
Sbjct: 250 GFRLL-------------AGDLDLATGLFVLL--LAPEFYLPLRQLGAQYHARADGVAAA 294
Query: 399 AKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKT 458
+F ++D P + S +E V +YP R L S TVP G+
Sbjct: 295 EALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRPA--LRPVSFTVPPGER 350
Query: 459 IALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT 518
+ALVG SG+GKST+++L+ F DPT G + ++G + R QI V Q P LFA
Sbjct: 351 VALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG 410
Query: 519 TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578
TI ENI L RPDA EI EA A F+ LP G DT + E G LSGGQ QR+A+A
Sbjct: 411 TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALA 470
Query: 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVL 637
RA L++ +LLLDE T+ LD+E+E V EAL GRT L++ HRL+ AD + VL
Sbjct: 471 RAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 1e-68
Identities = 101/270 (37%), Positives = 154/270 (57%), Gaps = 6/270 (2%)
Query: 1054 SVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKT 1113
+F LL+ P + V + E+ L+++ F YP P DL+L +AG+
Sbjct: 293 KLFTLLESPVAT-PGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQL 349
Query: 1114 LALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS 1173
ALVG SG GKS+++ L+ F P+ G + ++G D+R + ++ R+ ++ V Q P LFA
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
Query: 1174 TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233
TI ENI A++ EII A A +F+ PDG T +GE G LSGGQ QR+A+A
Sbjct: 410 TIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALA 468
Query: 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVID 1293
RA + A ++LLDE T+ LDAE+E+ + +AL KT +V+ HRL +A I V+D
Sbjct: 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLD 528
Query: 1294 DGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
+G++ E G+H L + G YA +++ Q
Sbjct: 529 NGRLVEQGTHEELSEKQ--GLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 2e-68
Identities = 148/446 (33%), Positives = 238/446 (53%), Gaps = 38/446 (8%)
Query: 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGES 307
WQL L+ L +P++A++ + L + +Q A S + ++++ IR++ AF
Sbjct: 137 WQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAF---- 192
Query: 308 KALQAYSSAL--KVAQRLGYKSGFAKGMGLG--------ATYFVVFCSYALLLWYGGYLV 357
L+ SAL A+ G K M + Y + + L + G ++V
Sbjct: 193 -GLEDRQSALFAADAEDTG-----KKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV 246
Query: 358 RHH-FTNGGLAIATMF-AVMIGG-LALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRN 414
+ T G L M+ +MI LALA + + A ++I ++ P +
Sbjct: 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWM---FNIVERGSAAYSRIRAMLAEAPVVKDG 303
Query: 415 SESGLELDSVSGLIELKHVDFSYP--SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTV 472
SE + G +++ F+YP P L N + T+ G+ + + G +GSGKST+
Sbjct: 304 SEP---VPEGRGELDVNIRQFTYPQTDHP---ALENVNFTLKPGQMLGICGPTGSGKSTL 357
Query: 473 VSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532
+SLI+R +D + G + + L+L R ++ +VSQ P LF+ T+ NI LGRPDA
Sbjct: 358 LSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDAT 417
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
EIE AR+A+ + I++LP G+DT+V ERGV LSGGQKQRI+IARA+L N IL+LD+
Sbjct: 418 QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELI 652
A SA+D +E + L ++ GRT ++ AHRLS + +A + V+Q G +++ G HD+L
Sbjct: 478 ALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
Query: 653 AKGENGVYAKLIRMQEAAHETALNNA 678
++G Y + R Q+ E AL++A
Sbjct: 538 Q--QSGWYRDMYRYQQL--EAALDDA 559
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 3e-68
Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 29/444 (6%)
Query: 888 ALMLVACTAGFVLQWRLALVLI--AVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAG 945
AL L+ TA F + WRL++VL+ + +++A V+Q+ K +E + +
Sbjct: 143 ALFLLIPTA-FAMDWRLSIVLMVLGILYILIAKLVMQRT--KNGQAAVEHHYHNVFKHVS 199
Query: 946 EAIGNVRTVAAFN---SELMIVGLFSSNL---QTPLRRCFWKGQIAGSGYGVAQFCLYAS 999
++I NV V ++N +E + F++NL Q P+ W +G + +
Sbjct: 200 DSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD--WWALASGLNRMASTISMMCI 257
Query: 1000 YALGLWYSSWLVKHGISDFSKTIRV--FMVLMVSANGAAETLTLAPDFIKGGRA-MRSVF 1056
+G + LV G + I F L++ G + ++ I RA + F
Sbjct: 258 LVIG----TVLVIKGELSVGEVIAFIGFANLLI---GRLDQMSGFITQIFEARAKLEDFF 310
Query: 1057 DLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLAL 1116
DL D + E +P P ++G VE +H+ F + + D+S A+AG+T+A+
Sbjct: 311 DLEDSVFQRE--EPADAPELPNVKGAVEFRHITFEFANSSQG--VFDVSFEAKAGQTVAI 366
Query: 1117 VGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIY 1176
VGP+G GK+++I L+QR Y+P+ G+++IDG DI +SLR+ +A V Q+ LF +I
Sbjct: 367 VGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426
Query: 1177 ENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236
ENI G E AT+ E+ EAA+ A A FI +GY T VGERG +LSGG++QR+AIARA
Sbjct: 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486
Query: 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGK 1296
++ A I++LDEATSALD E+E V+ A+D +TT ++AHRLST+RNA ++ +D G+
Sbjct: 487 LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546
Query: 1297 VAELGSHSHLLKNNPDGCYARMIQ 1320
+ E GS L+ DG + ++++
Sbjct: 547 LIEKGSFQELI--QKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 9e-67
Identities = 123/429 (28%), Positives = 200/429 (46%), Gaps = 61/429 (14%)
Query: 898 FVLQWRLALVLIAVFPVVVAAT-VLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAA 956
++ L V + P+++ +LQ+ + M + + + E++ + T+ A
Sbjct: 281 AIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQR-NAVLVESLSGLETIKA 339
Query: 957 FNSELMI------VGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWL 1010
N+E + R ++ AQF
Sbjct: 340 LNAEGRFQRRWEQTVAALARSGLKSRF------LSNLATNFAQFIQQLVSVA-------- 385
Query: 1011 VKHGISDFSKTIRVFMVLMVSANGAAETLT---LAPDFIKGGRAM--------------- 1052
I V V ++S LT L + GRA+
Sbjct: 386 -----------IVVVGVYLISDG----ELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQ 430
Query: 1053 -RSVFDLLDR--KTEIEPDDPDATPV-PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRA 1108
++ LD + +E + RL+GE+E ++V F+YP + + P ++SL
Sbjct: 431 AKTALQSLDELMQLPVE-RPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTI 488
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
R G+ +A++G G GKS+++ L+ Y+P+ G V++DG DIR+ + LRR++ VPQ+P
Sbjct: 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548
Query: 1169 CLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228
LF T+ +NIA G A + EI+ AA LA +F+ PDG +GERG LSGGQ+Q
Sbjct: 549 RLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608
Query: 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHV 1288
VA+ARA +R I+LLDE TSA+D SE ++ L R +GKT ++V HR S +
Sbjct: 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR 668
Query: 1289 IAVIDDGKV 1297
I V+D+G++
Sbjct: 669 IIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 2e-66
Identities = 158/445 (35%), Positives = 227/445 (51%), Gaps = 43/445 (9%)
Query: 240 FAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTV----- 294
+ F W+LALV +A L V A+ K + L +G I TV
Sbjct: 267 LGLMFYYSWKLALVAVA---LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLING 323
Query: 295 -VQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFV----VFCSYALL 349
++RV A E++A ++ ++L A+ + T F V S AL
Sbjct: 324 ISKLRVAGA---ENRAFARWAKLFSRQRKLELS---AQRIENLLTVFNAVLPVLTSAALF 377
Query: 350 LWYGGYLVRHHFTNGG-LAIATMFAVMIGG-LALAQAAPSISAFAKAKVAAAKIFR---- 403
L + G LA T F G L+ SI +A ++
Sbjct: 378 AAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISI-------LAVIPLWERAKP 430
Query: 404 IIDHKPSIDRNSESGLELDSVSGLIELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALV 462
I++ P +D +L SG IE+ V F Y P P IL++ SL + G+ +A+V
Sbjct: 431 ILEALPEVDEAKTDPGKL---SGAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIV 485
Query: 463 GSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKE 522
G SGSGKST++ L+ F P SG V DG D+ L ++ +R+Q+G+V Q L + +I E
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 523 NILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582
NI G P L+E EAAR+A I +P G T + E G LSGGQ+QR+ IARA++
Sbjct: 546 NIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604
Query: 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
+ P ILL DEATSALD+ ++ +V E+L+R + R +VIAHRLSTIR AD + VL G V
Sbjct: 605 RKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRV 662
Query: 643 SEIGTHDELIAKGENGVYAKLIRMQ 667
+ GT+DEL+A+ G++A+L R Q
Sbjct: 663 VQQGTYDELMARE--GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 1e-65
Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 8/225 (3%)
Query: 426 GLIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
G IE K+V Y RP + +L N S ++ G+ + +VG +GSGKS+++ + R + +S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI--LLGRPDADLNEIEEAARV 542
G +L+DG DI + L LR +I ++ Q+P LF+ TI+ N+ D +L + E +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGL 118
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
F+ LP G DT V E G LS GQ+Q + +ARA+L+ IL+LDEAT+++D E++
Sbjct: 119 K---EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 603 KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
L+Q+ + T L IAHRL TI +D + VL +G V E +
Sbjct: 176 ALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 3e-65
Identities = 86/223 (38%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 1081 GEVELKHVDFSYPSRPDI-PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
G++E K+V Y RP++ P+ +++S + G+ + +VG +G GKSS++ + R E SS
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLAN 1199
G ++IDG DI K L LR ++I+PQ+P LF+ TI N+ E ++ E+ +A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
+F+ SLP G T V E G LS GQ+Q + +ARA +RK++I++LDEAT+++D E++
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 1260 VQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
+Q+ + A T + +AHRL TI ++ I V+D G+V E S
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-64
Identities = 115/344 (33%), Positives = 184/344 (53%), Gaps = 20/344 (5%)
Query: 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATM-FAVMIGGLALAQAA 385
+G ++ + + A V L+LW V + G L IA FA + AL
Sbjct: 244 TGLSQALMILANGLTVV----LMLWLAAGGVGGNAQPGAL-IALFVFAALAAFEALM--- 295
Query: 386 PSISAF---AKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPE 442
P AF + +A +I I + KP + + S D + L +V F+YP +P+
Sbjct: 296 PVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQPQ 353
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502
+L SL + AG+ +AL+G +G GKST++ L+ R +DP G++LL+G I L
Sbjct: 354 -PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412
Query: 503 RQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA-ARVANAYSFIIKLPDGFDTQVR 561
RQ I +VSQ LF+ T+++N+LL P+A + E +V +++ G + +
Sbjct: 413 RQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEK--LLEDDKGLNAWLG 470
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI 621
E G QLSGG+++R+ IARA+L + +LLLDE T LD+E+E+ + E L +T L+I
Sbjct: 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMI 530
Query: 622 AHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
HRL+ + + D + V+ G + E GTH EL+A+ G Y +L +
Sbjct: 531 THRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ--QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 3e-64
Identities = 112/260 (43%), Positives = 162/260 (62%), Gaps = 8/260 (3%)
Query: 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGC 1122
E P+ +A P +L G +E+ V F Y RPD P I D+SL+ G+ +A+VGPSG
Sbjct: 433 EALPEVDEAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGS 490
Query: 1123 GKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG 1182
GKS+++ L+ F P SG V DG+D+ +++++RR + +V Q L + +I+ENIA G
Sbjct: 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-G 549
Query: 1183 HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
T E EAAR+A + I ++P G T + E G LSGGQ+QR+ IARA VRK I
Sbjct: 550 GAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
+L DEATSALD ++ V E+L+R T IV+AHRLSTIRNA I V+D G+V + G+
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGT 667
Query: 1303 HSHLLKNNPDGCYARMIQLQ 1322
+ L+ +G +A++ + Q
Sbjct: 668 YDELM--AREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 3e-63
Identities = 111/363 (30%), Positives = 184/363 (50%), Gaps = 22/363 (6%)
Query: 308 KALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLA 367
++ A + R S + L LLLW V G LA
Sbjct: 226 ATEASWLKAQRKQARFTGLSDAI--LLL----IAGLLVIGLLLWMAA-QVGA----GALA 274
Query: 368 IATMFAVMIGGLALAQAAPSISAFAKAKV-----AAAKIFRIIDHKPSIDRNSESGLELD 422
++ A +A ++ A + +A ++ I+D KP + + +
Sbjct: 275 QPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV---TFPDEQTA 331
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
+ +EL++V F+YP + + L NF+LT+ G+ +A++G SGSGKST++ L+ +DP
Sbjct: 332 TTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP 390
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARV 542
G + L+G +I SL + LR+ I +++Q LF+ T+++N+ L PDA E+ A +
Sbjct: 391 QQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQ 450
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
+ PDG +T + E G +LSGG+++R+A+ARA+L + + LLDE T LD +E
Sbjct: 451 VGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 603 KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662
+ V L G+T L++ HRL + + D + VL G + E GTH EL+A NG Y +
Sbjct: 511 RQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA--NNGRYKR 568
Query: 663 LIR 665
L +
Sbjct: 569 LYQ 571
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 4e-63
Identities = 101/269 (37%), Positives = 144/269 (53%), Gaps = 20/269 (7%)
Query: 1038 TLTLAPDF--------------IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEV 1083
L LAP+F G A ++F +LD T P +
Sbjct: 266 VLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAP---SL 322
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E V +YP R P R +S G+ +ALVGPSG GKS+++ L+ F +P+ G +
Sbjct: 323 EFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKF 1203
++G + + S R +A VPQ P LFA TI ENI A+++EI EA A D+F
Sbjct: 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEF 440
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
+++LP G T +GE G LSGGQ QR+A+ARAF+R A ++LLDE T+ LDAE+E V EA
Sbjct: 441 VAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 1264 LDRACSGKTTIVVAHRLSTIRNA-HVIAV 1291
L G+T ++V HRL+ A ++ +
Sbjct: 501 LRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 9e-63
Identities = 102/262 (38%), Positives = 151/262 (57%), Gaps = 5/262 (1%)
Query: 1059 LDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVG 1118
+D E E + RL G VEL+++ F Y S + P+ + SL + G+ +ALVG
Sbjct: 454 VDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVG 512
Query: 1119 PSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYEN 1178
SG GKS++ LV Y+P SG ++ DG + + L +A+V Q+ LF T+ +N
Sbjct: 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572
Query: 1179 IAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238
+ + +++++ A + A I+S P GY + E G LSGGQ+QR+ IARA VR
Sbjct: 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632
Query: 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVA 1298
I++LDEATSALD E+E+ + + L R G T I+VAHRLSTIR+ I V++ GKV
Sbjct: 633 NPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690
Query: 1299 ELGSHSHLLKNNPDGCYARMIQ 1320
+ G+H L G YAR+I+
Sbjct: 691 QRGTHEELWAVG--GAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 4e-62
Identities = 151/501 (30%), Positives = 252/501 (50%), Gaps = 29/501 (5%)
Query: 175 GERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAI-SEKLGNFIHYL 233
G+R SI + + Y++ + +F T RT ++V TDA + DA+ S L F+
Sbjct: 224 GQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRF-TDASSIIDALASTILSLFLDMW 281
Query: 234 ATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQT 293
+ G + + L L++L +P+ AVI + + KL + +A + + + +
Sbjct: 282 ILVIVGLFLVRQNM-LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIED 340
Query: 294 VVQIRVVFAFVGESKALQA----YSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALL 349
+ I + + E++ + L + Y+ + A ++ ++
Sbjct: 341 LNGIETIKSLTSEAERYSKIDSEFGDYLN--KSFKYQKADQGQQAIKAVTKLILN--VVI 396
Query: 350 LWYGGYLV-RHHFTNGGL----AIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRI 404
LW G YLV R T G L A+ + F + + Q A+VA ++ +
Sbjct: 397 LWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQ-----PKLQAARVANNRLNEV 451
Query: 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGS 464
S N + EL++++G I + V +SY IL++ SLT+ +VG
Sbjct: 452 Y-LVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGM 508
Query: 465 SGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI 524
SGSGKST+ L+ F+ SG++LL+G +K + LRQ I + QEP +F+ +I EN+
Sbjct: 509 SGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL 568
Query: 525 LLG-RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583
LLG + + +EI A +A I +P G+ T++ E G +SGGQKQRIA+ARA+L
Sbjct: 569 LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
+ +L+LDE+TS LD+ +EK + L + +T + +AHRLS +++D + VL G +
Sbjct: 629 DSKVLILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687
Query: 644 EIGTHDELIAKGENGVYAKLI 664
E G+HDEL+ NG YA LI
Sbjct: 688 EQGSHDELLD--RNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-60
Identities = 89/261 (34%), Positives = 157/261 (60%), Gaps = 9/261 (3%)
Query: 1063 TEIEPD---DPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGP 1119
TE +P+ +T D+ + L +V F+YP +P P+ + LSL+ +AG+ +AL+G
Sbjct: 318 TEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALLGR 374
Query: 1120 SGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENI 1179
+GCGKS+++ L+ R ++P G ++++G+ I Y+ +LR+ +++V Q LF++T+ +N+
Sbjct: 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNL 434
Query: 1180 AYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239
+A++ +IE + +K + G ++GE G QLSGG+++R+ IARA +
Sbjct: 435 LLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493
Query: 1240 AEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299
A ++LLDE T LDAE+ER + E L KT +++ HRL+ + I V+D+G++ E
Sbjct: 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIE 553
Query: 1300 LGSHSHLLKNNPDGCYARMIQ 1320
G+H LL G Y ++ Q
Sbjct: 554 QGTHQELLAQ--QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 3e-59
Identities = 98/301 (32%), Positives = 168/301 (55%), Gaps = 11/301 (3%)
Query: 1025 FMVLMVSANGAAETLTLAPD-FIKGGRAMRS---VFDLLDRKTEIEPDDPDATPVPDRLR 1080
+ L+V LAP F G+ + S + D+LD+K E+ D + T +
Sbjct: 279 ALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-EQTATTGQA- 336
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+EL++V F+YP + ++ +L G+ +A++G SG GKS+++ L+ ++P G
Sbjct: 337 --LELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANA 1200
+ ++G +I + ++LR ++++ Q LF+ T+ +N+ + A++ E+ A +
Sbjct: 394 SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGL 453
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
+K + S PDG T++GE G +LSGG+++R+A+ARA + A + LLDE T LD +ER V
Sbjct: 454 EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
L GKT ++V HRL + I V+D+GK+ E G+H+ LL NN Y R+ Q
Sbjct: 514 LALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR--YKRLYQ 571
Query: 1321 L 1321
L
Sbjct: 572 L 572
|
Length = 573 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 4e-59
Identities = 129/412 (31%), Positives = 203/412 (49%), Gaps = 30/412 (7%)
Query: 260 LIAVIGAIHATSLA--------KLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQ 311
++A+ GA+ LA K ++ EA +A N+ + + V+ A +G L
Sbjct: 145 ILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEA-MGMMGNLT 203
Query: 312 A-----YSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGL 366
+S L ++G + + YF + +L G YL G+
Sbjct: 204 KRWGRFHSKYLSAQSAASDRAGMLSNL---SKYFRIVLQSLVLGL-GAYLAIDGEITPGM 259
Query: 367 AIATMFAVMIGGLALA---QAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDS 423
IA ++ G ALA A F+ A+ A ++ ++ + PS D + L
Sbjct: 260 MIA---GSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
G + +++V P + L S ++ AG+ +A++G SGSGKST+ LI + PT
Sbjct: 313 PEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT 371
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
SG V LDG D+K + IG + Q+ LF T+ ENI +AD +I EAA++A
Sbjct: 372 SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLA 431
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
+ I++LPDG+DT + G LSGGQ+QRIA+ARA+ +P +++LDE S LD E E+
Sbjct: 432 GVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 604 LVQEALDRFMI-GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ A+ G T +VI HR S + D + VLQ G ++ G DE++AK
Sbjct: 492 ALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 8e-57
Identities = 228/928 (24%), Positives = 413/928 (44%), Gaps = 108/928 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS--LIERFYDPTSG 485
I +K+ FS+ S+ L++ +L +P G +A+VG +G GK++++S L E + TS
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARV--A 543
V+ R + V Q +F T++ENIL G +D E E R
Sbjct: 675 VVI--------------RGSVAYVPQVSWIFNATVRENILFG---SDF-ESERYWRAIDV 716
Query: 544 NAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE-S 601
A + L G D T++ ERGV +SGGQKQR+++ARA+ N I + D+ SALD+ +
Sbjct: 717 TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
Query: 602 EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYA 661
++ + + G+T +++ ++L + D + ++ +G + E GT EL G ++
Sbjct: 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGS--LFK 834
Query: 662 KLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFS 721
KL + NA K A N + I + S R
Sbjct: 835 KL-----------MENAGKMDATQEVNTNDEN---ILKLGPTVTIDVSER---------- 870
Query: 722 LSLDATYPSYRHEKLAFKEQASSF----W----RLAKMNSPEWVYALVGSVGSVICGSLN 773
+L +T R + K++ W R K WV ++ ++C
Sbjct: 871 -NLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMIL-----LVCYLTT 924
Query: 774 AFFAYVLSAIMSVY--------YNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWD 825
S +S++ Y+P + I Y L+G + T +SFW
Sbjct: 925 EVLRVSSSTWLSIWTDQSTPKSYSP--GFYI-----VVYALLGFGQVAV---TFTNSFWL 974
Query: 826 IVGE-NLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIV 884
I + KR+ + ML ++L+ + +F N + R+ R + D ++ + + + + +
Sbjct: 975 ISSSLHAAKRLHDAMLNSILRAPMLFF--HTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032
Query: 885 QNTALMLVACTAGFVLQWRLALV-LIAVFPVVV---AATVLQKMFMKGFSGDMEAAHSKA 940
N L++ F L ++ + L A+ P+++ AA + + + S
Sbjct: 1033 -NQLWQLLST---FALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPI 1088
Query: 941 TQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASY 1000
GEA+ + ++ A+ + + + ++ +R F + + + +
Sbjct: 1089 YAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIR--FTLANTSSNRWLTIRLETLGGV 1146
Query: 1001 ALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRS------ 1054
+ L + ++++G ++ M L++S TL L+ + +A S
Sbjct: 1147 MIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL-LSGVLRQASKAENSLNSVER 1205
Query: 1055 VFDLLDRKTEIEPDDPDATPVPD-RLRGEVELKHVDFSYPSRPDIP-IFRDLSLRARAGK 1112
V + +D +E + PV RG ++ + V Y RP +P + LS +
Sbjct: 1206 VGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSE 1263
Query: 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA 1172
+ +VG +G GKSS++ + R E GR+MID D+ K+ L LRR ++I+PQ P LF+
Sbjct: 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323
Query: 1173 STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232
T+ NI E ++++ EA A+ I P G V E G S GQ+Q +++
Sbjct: 1324 GTVRFNIDPFSEH-NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVI 1292
ARA +R+++I++LDEAT+++D ++ +Q + T +V+AHRL+TI + I V+
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVL 1442
Query: 1293 DDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
G+V E S LL + + RM+
Sbjct: 1443 SSGQVLEYDSPQELLSRDTSA-FFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-56
Identities = 129/412 (31%), Positives = 207/412 (50%), Gaps = 30/412 (7%)
Query: 260 LIAVIGAIHATSLA--------KLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQ 311
LIA+ GAI LA K ++ EA +A + + T+ V+ A +G L
Sbjct: 163 LIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEA-MGMLGNLA 221
Query: 312 A-----YSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGL 366
++ L +R ++G G + + A+L G +LV G+
Sbjct: 222 KRWGRFNAAYLSAQERASDRNG---AFGALSRALRMALQSAVLGL-GAWLVIKGEITPGM 277
Query: 367 AIATMFAVMIGGLALA---QAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDS 423
IA ++ G ALA A + F A+ + ++ ++ P+ + L +
Sbjct: 278 MIA---GSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPA 330
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
G + ++ + + P + + IL S + AG+ + ++G SGSGKST+ L+ + PT
Sbjct: 331 PQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
SG V LDG D++ L + IG + Q+ LF TI ENI +AD ++ EAAR+A
Sbjct: 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
+ I++LP G+DT++ E G LSGGQ+QRIA+ARA+ +P +++LDE S LDSE E
Sbjct: 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509
Query: 604 LVQEALDRFMI-GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ A+ G T +VIAHR S + D + VLQ G ++ G +E++AK
Sbjct: 510 ALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 3e-56
Identities = 102/250 (40%), Positives = 148/250 (59%), Gaps = 4/250 (1%)
Query: 1074 PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133
PVP+ RGE+++ F+YP D P +++ + G+ L + GP+G GKS++++L+QR
Sbjct: 306 PVPEG-RGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363
Query: 1134 FYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIE 1193
++ S G + + K L S R +A+V Q P LF+ T+ NIA G AT+ EI
Sbjct: 364 HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEH 423
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
ARLA+ I LP GY T VGERGV LSGGQKQR++IARA + AEI++LD+A SA+D
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 1254 AESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313
+E + L + G+T I+ AHRLS + A I V+ G +A+ G+H L G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA--QQSG 541
Query: 1314 CYARMIQLQR 1323
Y M + Q+
Sbjct: 542 WYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 3e-56
Identities = 88/281 (31%), Positives = 156/281 (55%), Gaps = 8/281 (2%)
Query: 392 AKAKV--AAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNF 449
AKA+ AA + ++ + + E L + + ++ D S +
Sbjct: 313 AKAQAVGAAESLVTFLETPLAHPQQGEKELASNDP---VTIEAEDLEILSPDGKTLAGPL 369
Query: 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLV 509
+ T+PAG+ IALVG SG+GK+++++ + F P G + ++G +++ L R+ + V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 510 SQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569
Q P L T+++N+LLG PDA ++++A A F+ LP G DT + ++ LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIR 629
GQ QR+A+ARA+L+ +LLLDE T++LD+ SE+LV +AL+ +TTL++ H+L +
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA 548
Query: 630 KADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
+ D + V+Q G + + G + EL G++A L+ ++
Sbjct: 549 QWDQIWVMQDGQIVQQGDYAELSQ--AGGLFATLLAHRQEE 587
|
Length = 588 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-55
Identities = 113/287 (39%), Positives = 169/287 (58%), Gaps = 11/287 (3%)
Query: 389 SAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNN 448
S +A VA ++F ++D N + L+ SG I++ +V F+Y R + +L N
Sbjct: 306 SMLQQAVVAGERVFELMDGPRQQYGNDDRPLQ----SGRIDIDNVSFAY--RDDNLVLQN 359
Query: 449 FSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508
+L+VP+ +ALVG +GSGKST+ SL+ +Y T G++ LDG + SL LRQ + +
Sbjct: 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419
Query: 509 VSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568
V Q+P + A T N+ LGR D ++ +A LPDG T + E+G LS
Sbjct: 420 VQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL-VIAHRLST 627
GQKQ +A+AR +++ P IL+LDEAT+ +DS +E+ +Q+AL + TTL VIAHRLST
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLST 537
Query: 628 IRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETA 674
I +AD + VL +G E GTH +L+A G Y ++ ++Q A E A
Sbjct: 538 IVEADTILVLHRGQAVEQGTHQQLLAA--QGRYWQMYQLQLAGEELA 582
|
Length = 592 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 4e-53
Identities = 125/437 (28%), Positives = 205/437 (46%), Gaps = 28/437 (6%)
Query: 203 RTSDVVYAINTDAVIVQD----AISEKLGNFIHYLAT--FVTGFAVGFSAVWQL-ALVTL 255
R D++ + D +QD I + A + +V + + L+
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAG 167
Query: 256 AVVPLIAV-IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYS 314
V PL+++ +LA+L G L+ ++ A AL
Sbjct: 168 FVAPLVSLRAARAAEQALARLRG----ELAAQLTDALDGAAELV---ASGALPAALAQVE 220
Query: 315 SALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAV 374
A + R ++ A +G T + LW GG V +G LA T+ +
Sbjct: 221 EADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAV----ADGRLAPVTLAVL 276
Query: 375 MIGGLALAQAAPSISAFA----KAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGL--I 428
++ LA +A ++ A A + + AA +I ++D + + G +
Sbjct: 277 VLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVA-EGSAPAAGAVGLGKPTL 335
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
EL+ + YP P V L+ SL +P G+ +A++G SGSGKST+++ + DP G+V
Sbjct: 336 ELRDLSAGYPGAPPV--LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSF 548
LDG + SL +R+++ + +Q+ LF TT++EN+ L RPDA E+ A +
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADW 453
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
+ LPDG DT + E G +LSGG++QR+A+ARA+L + ILLLDE T LD+E+ + E
Sbjct: 454 LRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 609 LDRFMIGRTTLVIAHRL 625
L + GRT ++I H L
Sbjct: 514 LLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 9e-52
Identities = 75/217 (34%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
L+ AG+ +ALVGPSG GK+S++ + F P G + I+G ++R+ + +S R+H++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1164 VPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223
V Q P L T+ +N+ G+ A++ ++ +A A +F+ LP G T +G++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTI 1283
GQ QR+A+ARA ++ +++LLDE T++LDA SE+ V +AL+ A +TT++V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 1284 RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
I V+ DG++ + G ++ L + G +A ++
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAELSQA--GGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 1e-51
Identities = 183/759 (24%), Positives = 328/759 (43%), Gaps = 144/759 (18%)
Query: 28 VSSPPFNNHNNSNNN------YANPSPQAQAQETTTTTKRQMENNSS------SSSSAAN 75
VSS +N++N ++ Y + E +K + E+ S+ S +A+
Sbjct: 730 VSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASE 789
Query: 76 SE---------------PKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPI 120
+ PK P+++ V E+F + + + ++I V G +P+
Sbjct: 790 NNAGGKLPFLRNLFKRKPKAPNNLRIV-YREIFSYKKDVTIIALSI-----LVAGGLYPV 843
Query: 121 FLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSI 180
F +A V++ N + KY+ Y LV+ A++ S + GE+
Sbjct: 844 FALLYAKYVSTLFDFAN----LEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEK 899
Query: 181 KMRIKYLEAALNQDVQYFDTEVRTSDVVYA-INTDAVIVQDAISEKLGNFIHYLATFVTG 239
M+ + E L Q++ +FD + ++ A IN D +++ + + F H++ F+
Sbjct: 900 TMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVS 959
Query: 240 FAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNI---------- 289
+ F +A V + + AI A L ++ ++Q G +
Sbjct: 960 MVMSFYFCPIVAAVLTGTYFIFMRVFAIRA-RLTANKDVEKKEINQPGTVFAYNSDDEIF 1018
Query: 290 ------VEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAK----------GM 333
+++ + V + L+ Y L + + + Y + K G
Sbjct: 1019 KDPSFLIQEAFYNMNTVIIY-----GLEDYFCNL-IEKAIDYSNKGQKRKTLVNSMLWGF 1072
Query: 334 GLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAK 393
A F+ +Y W+G +L+R + ++F + G +
Sbjct: 1073 SQSAQLFINSFAY----WFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128
Query: 394 AKVAAAKIFRIIDHKPSIDRNSESGLEL---DSVSGLIELKHVDFSYPSRPEVRILNNFS 450
AK++ K + +I K +ID G+ + + + G IE+ V+F Y SRP V I + +
Sbjct: 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLT 1188
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ----- 505
+ + KT A+VG +GSGKSTV+SL+ RFYD + ++ ++ + Q
Sbjct: 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248
Query: 506 -IGL-------VSQEPA-------------------------------LFATTIKENIL- 525
+G+ +++E LF+ +E +L
Sbjct: 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308
Query: 526 ---------LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576
G+ DA +++ A + A FI LP+ +DT V G LSGGQKQRIA
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368
Query: 577 IARAMLKNPAILLLDEATSALDSESEKLVQEAL----DRFMIGRTTLVIAHRLSTIRKAD 632
IARA+L+ P ILLLDEATS+LDS SEKL+++ + D+ +T + IAHR+++I+++D
Sbjct: 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK--ADKTIITIAHRIASIKRSD 1426
Query: 633 VVAVL----QQGS-VSEIGTHDELIAKGENGVYAKLIRM 666
+ V + GS V GTH+EL++ ++GVY K +++
Sbjct: 1427 KIVVFNNPDRTGSFVQAHGTHEELLS-VQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 8e-51
Identities = 90/244 (36%), Positives = 141/244 (57%), Gaps = 3/244 (1%)
Query: 1066 EPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS 1125
P A P+P G + +++V P P R +S +AG+ LA++GPSG GKS
Sbjct: 301 YPSRDPAMPLP-EPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKS 358
Query: 1126 SVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES 1185
++ L+ + P+SG V +DG D+++++ ++ +H+ +PQ+ LF T+ ENIA E+
Sbjct: 359 TLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN 418
Query: 1186 ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
A +IIEAA+LA + I LPDGY T +G G LSGGQ+QR+A+ARA ++++L
Sbjct: 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478
Query: 1246 DEATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHS 1304
DE S LD E E+++ A+ G T +V+ HR S + I V+ DG++A G
Sbjct: 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERD 538
Query: 1305 HLLK 1308
+L
Sbjct: 539 EVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 5e-50
Identities = 89/242 (36%), Positives = 142/242 (58%), Gaps = 6/242 (2%)
Query: 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
L G++ + V +SY I D+SL + +VG SG GKS++ L+ F++
Sbjct: 470 LNGDIVINDVSYSYGYGS--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-HESATESEIIEAARL 1197
SG ++++G ++ + +LR+ + +PQEP +F+ +I EN+ G E+ ++ EI A +
Sbjct: 528 SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI 587
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A I ++P GY+T + E G +SGGQKQR+A+ARA + +++++LDE+TS LD +E
Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647
Query: 1258 RSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ + L KT I VAHRLS + + I V+D GK+ E GSH LL N G YA
Sbjct: 648 KKIVNNL-LNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN--GFYAS 704
Query: 1318 MI 1319
+I
Sbjct: 705 LI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 9e-50
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 44/216 (20%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E+++V F YP +L N S ++ G+++A++G SGSGKST+ LI PTSG+V
Sbjct: 1 LEVENVSFRYPGAEPP-VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
LDG DI L +G + Q+ LF+ +I ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
SGGQ+QR+ +ARA+ NP IL+LDE S LD E E+ + +
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 608 ALDRF-MIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
A+ G T +VIAHR T+ AD + VL+ G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-49
Identities = 118/434 (27%), Positives = 187/434 (43%), Gaps = 33/434 (7%)
Query: 863 ARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQ 922
RL D + ++ I + A A VL AL+L A +
Sbjct: 114 GRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFV---- 169
Query: 923 KMFMKGFSG-DMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLF----------SSNL 971
S AA +L GE + +EL+ G L
Sbjct: 170 ---APLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADREL 226
Query: 972 QTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFS---KTIRVFMVL 1028
RR A + G A L A L + + W ++D T+ V ++L
Sbjct: 227 TRAERR-----AAAATALGAALTLLAA--GLAVLGALWAGGPAVADGRLAPVTLAVLVLL 279
Query: 1029 MVSANGAAETLTLAPDFIKGGR-AMRSVFDLLDRKTEI-EPDDPDATPVPDRLRGEVELK 1086
++A A L A + R A + ++LD + E P A V +EL+
Sbjct: 280 PLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPT-LELR 338
Query: 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG 1146
+ YP P+ +SL G+ +A++GPSG GKS+++A + +P G V +DG
Sbjct: 339 DLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 396
Query: 1147 KDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISS 1206
+ + +RR +++ Q+ LF +T+ EN+ AT+ E+ A ++ +
Sbjct: 397 VPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRA 456
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR 1266
LPDG T +GE G +LSGG++QR+A+ARA + A I+LLDE T LDAE+ + E L
Sbjct: 457 LPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA 516
Query: 1267 ACSGKTTIVVAHRL 1280
A SG+T +++ H L
Sbjct: 517 ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 4e-49
Identities = 93/245 (37%), Positives = 145/245 (59%), Gaps = 3/245 (1%)
Query: 1066 EPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS 1125
P + P+P +G + ++ + + P + PI + +S +AG+ L ++GPSG GKS
Sbjct: 319 LPAAAERMPLP-APQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKS 376
Query: 1126 SVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES 1185
++ L+ + P+SG V +DG D+R+++ + L RH+ +PQ+ LF TI ENIA E
Sbjct: 377 TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEE 436
Query: 1186 ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
A ++IEAARLA + I LP GY T +GE G LSGGQ+QR+A+ARA +++L
Sbjct: 437 ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496
Query: 1246 DEATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHS 1304
DE S LD+E E ++ A+ A + G T +V+AHR S + + I V+ DG++A G
Sbjct: 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556
Query: 1305 HLLKN 1309
+L
Sbjct: 557 EVLAK 561
|
Length = 580 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-49
Identities = 99/253 (39%), Positives = 144/253 (56%), Gaps = 24/253 (9%)
Query: 427 LIELKHVDFSYPSR--PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+IEL++V ++ V L++ SL +P G+ ++G SG+GKST++ LI PTS
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 485 GQVLLDGHDIKSLK---LRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE 535
G V +DG D+ +L LR LRQ+IG++ Q L ++ T+ EN+ L G P A E
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA---E 117
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
I+ RVA ++ L D D QLSGGQKQR+AIARA+ NP ILL DEATS
Sbjct: 118 IK--QRVAELLE-LVGLSDKADR----YPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 596 ALDSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652
ALD E+ + + E L +G T ++I H + +++ D VAVL QG + E GT E+
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230
Query: 653 AKGENGVYAKLIR 665
A ++ + + I
Sbjct: 231 ANPKHAITQEFIG 243
|
Length = 339 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 3e-48
Identities = 85/219 (38%), Positives = 119/219 (54%), Gaps = 14/219 (6%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
ELK++ FSYP P D+SL + G+ + +VGP+G GKS+++ L+ P+SG V+
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG--HESATESEIIEAARLAN 1199
+DGKD+ K +LK LRR + +V Q P F T+ E +A+G + E EI E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
+ L D F LSGGQKQRVAIA +I+LLDE T+ LD R
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1260 VQEALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGK 1296
+ E L + GKT I+V H L + A + V++DGK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-47
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ELK + +Y S + DLSL G+ LAL+GPSGCGK++++ L+ P SG +
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
+IDG+D+ + RR++ +V Q+ LF T+ ENIA+G ++ + + E
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L + ++ P +LSGGQ+QRVA+ARA R+ ++LLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1256 SERSVQEALDRACS--GKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELG 1301
++E L G TTI V H + A IAV+++G++ ++G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 7e-47
Identities = 97/272 (35%), Positives = 158/272 (58%), Gaps = 16/272 (5%)
Query: 1055 VFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTL 1114
VF+L+D + D P+ G +++ +V F+Y R D + ++++L + +
Sbjct: 318 VFELMDGPRQ--QYGNDDRPLQS---GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFV 370
Query: 1115 ALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAST 1174
ALVG +G GKS++ +L+ +Y + G + +DG+ + + LR+ +A+V Q+P + A T
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 1175 IYENIAYGHESATES--EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232
N+ G + + E + +E +LA + SLPDG T +GE+G LS GQKQ +A+
Sbjct: 431 FLANVTLGRDISEEQVWQALETVQLA---ELARSLPDGLYTPLGEQGNNLSVGQKQLLAL 487
Query: 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVV-AHRLSTIRNAHVIAV 1291
AR V+ +I++LDEAT+ +D+ +E+++Q+AL A TT+VV AHRLSTI A I V
Sbjct: 488 ARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILV 546
Query: 1292 IDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
+ G+ E G+H LL G Y +M QLQ
Sbjct: 547 LHRGQAVEQGTHQQLLAAQ--GRYWQMYQLQL 576
|
Length = 592 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 9e-47
Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ + +V FSYP + + +L N SL + G+ IAL+G SGSGKST++ L+ P G++
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
LDG + L+ + L I +++Q P LF TT++ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
G + SGG++QR+A+AR +L++ I+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646
+ + +T + I H L+ I D + L+ G + G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-46
Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 16/229 (6%)
Query: 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+IELK+V Y E V L + +L + AG+ +A+VG SGSGKST+++L+ PTSG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 486 QVLLDGHDIKSL------KLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEE 538
+VL++G D+ L KLR R++IG V Q L T+ EN+ L +
Sbjct: 61 EVLINGKDLTKLSEKELAKLR--RKKIGFVFQNFNLLPDLTVLENVELP---LLIAGKSA 115
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
R A ++++ D ++++ +LSGGQ+QR+AIARA++ NP I+L DE T LD
Sbjct: 116 GRRKRAAEE-LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 599 SESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645
S++ K V E L G+T +++ H + AD V L+ G + E
Sbjct: 175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 3e-46
Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 24/224 (10%)
Query: 1081 GEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
GE+E++++ Y PD+P + +++S + +AG+ + +VG +G GKS++I + RF E
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENI-AYGHESATESEIIEAARLA 1198
G++ IDG DI L+ LR + I+PQ+P LF+ TI N+ + S + EI A R
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS--DEEIYGALR-- 118
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
V E G+ LS GQ+Q + +ARA +++ +++LDEAT+++D ++
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
+Q+ + + T + +AHRL TI + I V+D G+V E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 7e-46
Identities = 81/235 (34%), Positives = 123/235 (52%), Gaps = 22/235 (9%)
Query: 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
L+E+K++ S+P+ V+ L++ S ++ G+T+ LVG SGSGKST+ I PTSG
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 486 QVLLDGHDIKSLK---LRWLRQQIGLVSQEP--ALFAT-TIKENI-----LLGRPDADLN 534
++ DG D+ L + R++I +V Q+P +L TI E I + G+
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-- 118
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
E + LP+ + +LSGGQ+QR+AIARA+ NP +L+ DE T
Sbjct: 119 --EARKEAVLLLLVGVGLPEEV---LNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 595 SALDSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
SALD + + + L + +G T L I H L + K AD VAV+ G + E G
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 2e-45
Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 30/241 (12%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++++ F Y +P IL++ S ++P G+ ++G +GSGKST++ + P SG+
Sbjct: 2 MLEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEP-ALFATTIKENILLGR-P---------DADLNE 535
VLLDG DI SL + L +++ V Q P A F T+ E +LLGR P D
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+EEA + +R V +LSGG++QR+ IARA+ + ILLLDE T
Sbjct: 119 VEEALELLGLEHL------------ADRPVDELSGGERQRVLIARALAQETPILLLDEPT 166
Query: 595 SALDSESEKLVQEALDRFMI--GRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDEL 651
S LD + V E L G T +++ H L+ R AD + +L+ G + GT +E+
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226
Query: 652 I 652
+
Sbjct: 227 L 227
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 3e-45
Identities = 85/217 (39%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
ELK++ FSYP L++ SLT+ G+ + +VG +GSGKST++ L+ PTSG+VL
Sbjct: 1 ELKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPA--LFATTIKENILLGRPDADLNEIEEAARVANAY 546
+DG D+ L L+ LR+++GLV Q P F T++E + G + L E E RV A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA- 118
Query: 547 SFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
L +R+R LSGGQKQR+AIA + +P ILLLDE T+ LD + +
Sbjct: 119 -----LELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 606 QEALDRFMIGRTTLVIA-HRLSTIRK-ADVVAVLQQG 640
E L + T++I H L + + AD V VL+ G
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 4e-45
Identities = 82/240 (34%), Positives = 125/240 (52%), Gaps = 29/240 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
IEL+ ++ Y + L + SL +P G+ AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 483 TSGQVLLDGHDIKSLKLR--WLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G+VLLDG DI L + LR+++G+V Q+P F +I +N+ G + +L+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 535 EIEEAA--RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
E E A + A L D ++ G LSGGQ+QR+ +ARA+ P +LLLDE
Sbjct: 118 ERVEEALRKAA--------LWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDE 167
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDEL 651
TSALD S ++E + T +++ H + R AD A L G + E G +++
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 6e-45
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 44/215 (20%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E+++V F YP + P+ R++S G++LA++GPSG GKS++ L+ P+SGRV
Sbjct: 2 EVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKF 1203
+DG DI +++ L H+ +PQ+ LF+ +I ENI
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
LSGGQ+QR+ +ARA I++LDE S LD E ER++ +A
Sbjct: 97 ------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 1264 LDRA-CSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
+ +G T IV+AHR T+ +A I V++DG+V
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 27/243 (11%)
Query: 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+IELK+V + +V L + SL+VP G+ ++G SG+GKST++ I PTSG
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 486 QVLLDGHDIKSL---KLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNEI 536
VL+DG D+ L +LR R++IG++ Q L ++ T+ EN+ + G P A EI
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKA---EI 117
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
EE RV + G + + QLSGGQKQR+ IARA+ NP +LL DEATSA
Sbjct: 118 EE--RVLELLELV-----GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 597 LDSESEKLVQEAL----DRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
LD E+ + + L G T ++I H + +++ D VAV+++G V E GT +E+
Sbjct: 171 LDPETTQSILALLRDINREL--GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 652 IAK 654
A
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 6e-44
Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 25/234 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----P 1137
+EL+ ++ Y D +D+SL G+ AL+GPSGCGKS+++ L+ R + P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1138 SSGRVMIDGKDIRK--YNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESATES 1189
G V++DGKDI ++ LRR + +V Q+P F +IY+N+AYG
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
E +E A L A L D K + G LSGGQ+QR+ +ARA + E++LLDE T
Sbjct: 118 ERVEEA-LRKAA-----LWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
SALD S ++E + T ++V H + R A A + +G++ E G
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-43
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 20/239 (8%)
Query: 1083 VELKHVDFSYPSR--PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+EL++V ++ + D+SL G+ ++G SG GKS+++ L+ P+SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1141 RVMIDGKDI---RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG--HESATESEIIE- 1193
V +DG+D+ + L+ LR+ + ++ Q L +S T++EN+A+ ++EI +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
A L + L D + QLSGGQKQRVAIARA +I+L DEATSALD
Sbjct: 122 VAELLE----LVGLSDKADRYP----AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 1254 AESERSVQEAL-DRACSGKTTIV-VAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
E+ +S+ E L D TIV + H + ++ +AV+D G++ E G+ S + N
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232
|
Length = 339 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 81/224 (36%), Positives = 122/224 (54%), Gaps = 24/224 (10%)
Query: 426 GLIELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
G IE++++ Y P P V L N S V AG+ I +VG +G+GKST++ + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA-DLNEIEEAARVA 543
G++ +DG DI ++ L LR + ++ Q+P LF+ TI+ N L D EI A RV+
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN--LDPFDEYSDEEIYGALRVS 120
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
E G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D ++
Sbjct: 121 ------------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
L+Q+ + T L IAHRL TI D + V+ G V E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-43
Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 26/282 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE++++ Y + L+ S V G+ L+G +G+GK+T++ ++ PTSG+
Sbjct: 4 VIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEEA 539
+L+ G+D+ + +R++IG V QEP+L+ T++EN+ L G + E IEE
Sbjct: 62 ILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+ L D + +VR LSGG KQR++IA A+L +P +L+LDE TS LD
Sbjct: 121 LE-------LFGLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 600 ESEKLVQEALDRF--MIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAK-- 654
ES + + E L G T L+ H L D V +L G + GT +EL K
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
Query: 655 GENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPI 696
G+ + + R++ A L + + +
Sbjct: 230 GKGVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGV 271
|
Length = 293 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 3e-43
Identities = 83/234 (35%), Positives = 132/234 (56%), Gaps = 32/234 (13%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
E+ELK+V S+ + +D++L G+ + L+GPSGCGKS+++ ++ EP+SG
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESA------TESEIIEA 1194
++IDG+D+ +L +R +A+V Q L+ T+YENIA+G + + + E
Sbjct: 60 ILIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A+L + ++ P +QLSGGQ+QRVA+ARA VRK ++ LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1255 ESE---RSVQEALDRACSGKTTIVVAHRL---STIRNAHVIAVIDDGKVAELGS 1302
+ RS + L G TTI V H T+ A I V++DG++ ++G+
Sbjct: 167 KLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 4e-43
Identities = 84/241 (34%), Positives = 123/241 (51%), Gaps = 42/241 (17%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL+ + S+ R + + + L R G+ LA++GPSG GKS+++ L+ P SG V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1143 MIDGKDIRKYN---LKSLRRHMAIVPQEPCLFAS-TIYENIAYG---HESATESEIIEAA 1195
+IDG+DI + L LRR M ++ Q LF S T++EN+A+ H +E EI E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1196 RLANADKFISSLPDGYKTFVGERGV------QLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
VG RG +LSGG K+RVA+ARA E++L DE T
Sbjct: 118 LEKLE-------------AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 1250 SALD-------AESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
+ LD + RS+++ L G T+I+V H L T A IAV+ DGK+ G
Sbjct: 165 AGLDPIASGVIDDLIRSLKKEL-----GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
Query: 1302 S 1302
+
Sbjct: 220 T 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 5e-43
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 45/249 (18%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE+K++ S+ + +L SL+V G+ + ++G SGSGKST++ + +P SG
Sbjct: 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58
Query: 487 VLLDGHDIKSLK-LRWLRQQIGLVSQEPALFA-TTIKENILL------GRPDADLNEI-- 536
+ +DG D+ K + LR+++G+V Q+ LF T+ EN+ L A+ E
Sbjct: 59 ITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKAL 118
Query: 537 EEAARV-----ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
E +V A+AY P QLSGGQ+QR+AIARA+ +P ++L D
Sbjct: 119 ELLEKVGLADKADAY------PA-----------QLSGGQQQRVAIARALAMDPKVMLFD 161
Query: 592 EATSALDSESEKLVQEALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645
E TSALD E LV E LD M G T +++ H + R+ AD V + QG + E
Sbjct: 162 EPTSALDPE---LVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217
Query: 646 GTHDELIAK 654
G +E
Sbjct: 218 GPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 30/235 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++++ F Y +P I DLS G+ ++GP+G GKS+++ + +P SG V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCL-FASTIYENIAYG----------HESATESEI 1191
++DGKDI + K L + +A VPQ P F T+YE + G E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
EA L + +R V +LSGG++QRV IARA ++ I+LLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1251 ALDAESERSVQEALDRAC--SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
LD + V E L G T ++V H L+ R A + ++ DGK+ G+
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 14/223 (6%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ELK + +Y S VR L++ SLTV G+ +AL+G SG GK+T++ LI P SG++
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAY 546
L+DG D+ + R+ IG+V Q+ ALF T+ ENI G + + E ARV
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES-EKLV 605
+ G + + +LSGGQ+QR+A+ARA+ + P++LLLDE SALD++ E+L
Sbjct: 116 ELV-----GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 606 QEALDRFM-IGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIG 646
+E + +G TT+ + H + AD +AV+ +G + ++G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 13/221 (5%)
Query: 428 IELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
IELK++ +Y E V+ L SL++ G+ +A+VG SGSGKST+++++ PTSG+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 487 VLLDGHDIKSLKLRWL----RQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAAR 541
V +DG DI L + L R+ IG V Q L T EN+ L L + + R
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPKKER 117
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
A + ++ G ++ +LSGGQ+QR+AIARA+ +P I+L DE T LDSE+
Sbjct: 118 RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 602 EKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQG 640
K V E L G T +V+ H AD + L+ G
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-42
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 28/223 (12%)
Query: 1083 VELKHVDFSYPSRPDI--PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+ ++ F++ S +D++L G+ +A+VGP G GKSS+++ + E SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATE--SEIIEAARLA 1198
V S+ +A V QEP + TI ENI +G E ++I+A L
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL- 106
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
+ + LPDG T +GE+G+ LSGGQKQR+++ARA A+I LLD+ SA+DA R
Sbjct: 107 --EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1259 S-----VQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGK 1296
+ L KT I+V H+L + +A I V+D+G+
Sbjct: 165 HIFENCILGLLLN---NKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 5e-42
Identities = 79/221 (35%), Positives = 115/221 (52%), Gaps = 52/221 (23%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ELK+V Y + +LN+ SL + AG+ +AL+G SGSGKST++ I +P SG +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 488 LLDGHDIKSL--KLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVAN 544
L+DG D+ L +L LR++IG+V Q+ ALF T+ ENI LG
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES--- 601
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 602 -EKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQG 640
L++ + G T +++ H L + AD V VL+ G
Sbjct: 139 VRALLKSLQAQL--GITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 9e-42
Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 22/234 (9%)
Query: 1083 VELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+E+K++ S+P+ + D+S + G+TL LVG SG GKS++ + +P+SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1142 VMIDGKDIRKYN---LKSLRRHMAIVPQEPCLFAS-----TIYENIA---YGHESATESE 1190
++ DGKD+ K + K R+ + +V Q+P +S TI E IA H ++ E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 1191 IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
+ A L LP + + +LSGGQ+QRVAIARA ++++ DE TS
Sbjct: 120 ARKEAVLLLLVGV--GLP---EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 1251 ALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
ALD + + + L + G T + + H L + A +AV+ GK+ E G
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 9e-42
Identities = 80/243 (32%), Positives = 133/243 (54%), Gaps = 26/243 (10%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE ++V Y ++ + +++ +LT+ G+ + L+G SGSGK+T + +I R +PTSG+
Sbjct: 1 MIEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPDADLNEI--EE 538
+L+DG DI L LR++IG V Q+ LF T+ ENI LLG + + E
Sbjct: 58 ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADEL 117
Query: 539 AARVA-NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
V + + + P +LSGGQ+QR+ +ARA+ +P ILL+DE AL
Sbjct: 118 LDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 598 DSESEKLVQEALDRFM--IGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAK 654
D + K +QE + +G+T + + H + ++ AD +AV+ G + + T DE++A
Sbjct: 167 DPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 655 GEN 657
N
Sbjct: 227 PAN 229
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 9e-42
Identities = 77/231 (33%), Positives = 129/231 (55%), Gaps = 11/231 (4%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE ++V Y + +NN +L + G+ + L+G SGSGK+T + +I R +PTSG++
Sbjct: 1 IEFENVTKRYGGGKKA--VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAY 546
+DG DI+ LR++IG V Q+ LF T++ENI L P L + + A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VP--KLLKWPKEKIRERAD 115
Query: 547 SFIIKLPDGFDTQVRER-GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
++ L + +R +LSGGQ+QR+ +ARA+ +P +LL+DE ALD + +
Sbjct: 116 E-LLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 606 QEALDRF--MIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELIA 653
QE R +G+T + + H + R AD +A+++ G + ++GT DE++
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 41/219 (18%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ + +V FSYP + + + ++LSL + G+ +AL+G SG GKS+++ L+ +P G +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK 1202
+DG + K+L ++++ Q P LF +T+ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
G + SGG++QR+A+AR ++ A I+LLDE T LD +ER +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1263 ALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301
+ KT I + H L+ I + I +++GK+ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 26/227 (11%)
Query: 1083 VELKHVDFSYPS-RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+E+++V +Y + D+SL G+ +ALVGPSGCGKS+++ ++ P+SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANA 1200
V++DG+ + V Q+ L T+ +N+A G E + +A A
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERA 112
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
++ + + G F QLSGG +QRVA+ARA +++LLDE SALDA + +
Sbjct: 113 EELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170
Query: 1261 QEALDRACS--GKTTIVVAH------RLS------TIRNAHVIAVID 1293
QE L GKT ++V H L+ + R ++A ++
Sbjct: 171 QEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-41
Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IEL+ + S+ R +L L V G+ +A++G SGSGKST++ LI P SG+V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 488 LLDGHDIKSLK---LRWLRQQIGLVSQEPALF-ATTIKENILLG-RPDADLNEIEEAARV 542
L+DG DI L L LR+++G++ Q ALF + T+ EN+ R L+E E V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS-ES 601
+ G +LSGG K+R+A+ARA+ +P +LL DE T+ LD S
Sbjct: 118 LEKLEAV-----GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172
Query: 602 EKLVQEALD-RFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
+ + +G T++++ H L T AD +AVL G + GT +EL A
Sbjct: 173 GVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-41
Identities = 77/220 (35%), Positives = 108/220 (49%), Gaps = 48/220 (21%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ELK+V Y + D+SL AG+ +AL+GPSG GKS+++ + EP SG +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1143 MIDGKDIRKYN--LKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLAN 1199
+IDG+D+ L LRR + +V Q+ LF T+ ENIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
LSGGQ+QRVA+ARA +++LLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1260 VQEALD--RACSGKTTIVVAHRLS-TIRNAHVIAVIDDGK 1296
V+ L +A G T ++V H L R A + V+ DGK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-41
Identities = 80/236 (33%), Positives = 122/236 (51%), Gaps = 17/236 (7%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E +++ F YP +D+SL G+ + L+GP+G GKS+++ L+ +P+SG V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1143 MIDGKDIR-KYNLKSLRRHMAIVPQEPC--LFASTIYENIAYGHES--ATESEIIEAARL 1197
++DG D + +L LR+ + +V Q P LF T+ + +A+G E+ EI E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A + L D F LSGGQKQRVAIA EI+LLDE T+ LD +
Sbjct: 122 ALELVGLEELLD-RPPF------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 1258 RSVQEALD--RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNN 1310
R + E L + GKT I+V H L + A + V+DDGK+ G + + +
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-41
Identities = 76/245 (31%), Positives = 121/245 (49%), Gaps = 33/245 (13%)
Query: 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ELK+V + + +D+SL G+ ++G SG GKS++I + P+SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1142 VMIDGKDI---RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATES--EIIEAA 1195
V++DG D+ L+ RR + ++ Q L +S T++EN+A E A EI E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1196 R-------LAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
L + AD + + QLSGGQKQRV IARA +++L DE
Sbjct: 122 LELLELVGLEDKADAYPA---------------QLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 1248 ATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304
ATSALD E+ +S+ L G T +++ H + ++ +AV++ G+V E G+
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVE 226
Query: 1305 HLLKN 1309
+ N
Sbjct: 227 EVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 9/231 (3%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E ++V Y +L+L G+ L L+GPSG GK++ + ++ R EP+SG +
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANAD 1201
IDG+DIR+ + LRR + V Q+ LF T+ ENIA + + AD
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL---VPKLLKWPKEKIRERAD 115
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+ ++ + F +LSGGQ+QRV +ARA ++L+DE ALD + +Q
Sbjct: 116 ELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 1262 EALDR--ACSGKTTIVVAHRL-STIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
E R GKT + V H + R A IA++ +G++ ++G+ +L++
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 3e-40
Identities = 76/233 (32%), Positives = 130/233 (55%), Gaps = 27/233 (11%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+E+++V S+ D D+SL + G+ + L+GPSGCGK++++ ++ F +PSSG
Sbjct: 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE---SATESEII---- 1192
+++DG+DI ++ +R + +V Q LF T+ EN+A+G + ++EI
Sbjct: 61 EILLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
EA L + F P QLSGGQ+QRVA+ARA V + +++LLDE SAL
Sbjct: 119 EALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 1253 DAESERSVQEALDRAC--SGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGS 1302
DA+ +++ L G T + V H + + + IAV++DG++ ++G+
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 46/232 (19%)
Query: 428 IELKHVDFSYPSRPEVR--ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I ++ F++ S + L + +L VP G+ +A+VG GSGKS+++S + + SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAARVAN 544
V + G I VSQEP + TI+ENIL G+P D +
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEER----------- 96
Query: 545 AYSFIIK----------LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
Y +IK LPDG T++ E+G+ LSGGQKQRI++ARA+ + I LLD+
Sbjct: 97 -YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 595 SALDSES-----EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGS 641
SA+D+ E + L + +T +++ H+L + AD + VL G
Sbjct: 156 SAVDAHVGRHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 1e-39
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 22/235 (9%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++++ Y D +S G+ L+GP+G GK++++ ++ +P+SG +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENI-----AYGHESATESEIIEAAR 1196
++ G D+ K +RR + VPQEP L+ T+ EN+ YG E IE
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL- 120
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
+ F L D V LSGG KQR++IA A + E+++LDE TS LD ES
Sbjct: 121 ---LELF--GLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1257 ERSVQEAL-DRACSGKTTIVVA-HRLSTI-RNAHVIAVIDDGKVAELGSHSHLLK 1308
R + E L + A G TI+++ H L + +++DGK+ G+ L +
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-39
Identities = 68/215 (31%), Positives = 99/215 (46%), Gaps = 60/215 (27%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++++ F Y R ++SL +AG+ +ALVGP+G GKS+++ + +P+SG ++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKF 1203
IDGKDI K L+ LRR
Sbjct: 58 IDGKDIAKLPLEELRRR------------------------------------------- 74
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
I +P QLSGGQ+QRVA+ARA + +++LLDE TS LD S + E
Sbjct: 75 IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1264 LDR-ACSGKTTIVVAHRLSTIRNA-HVIAVIDDGK 1296
L A G+T I+V H A + V+ DGK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 85/239 (35%), Positives = 127/239 (53%), Gaps = 15/239 (6%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+IE +++ F YP L + SL + G+ + L+G +GSGKST++ L+ PTS
Sbjct: 1 LRMIEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 485 GQVLLDGHDIKSLKLRW-LRQQIGLVSQEPA--LFATTIKENILLGRPDADLNEIEEAAR 541
G+VL+DG D S K LRQ++GLV Q P LF T+++ + G + L E R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
VA A ++L ++ +R LSGGQKQR+AIA + P ILLLDE T+ LD +
Sbjct: 119 VAEA----LELVGL--EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172
Query: 601 SEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656
+ + E L + G+T +++ H L + + AD V VL G + G E+ E
Sbjct: 173 GRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-39
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 46/222 (20%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++++ Y R + DLSL AG+ + ++GP+G GKS+++ + +PSSG ++
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLAN-ADK 1202
+DGKD+ + K L R +A VPQ +E LA+ AD+
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ------------------------ALELLGLAHLADR 93
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
+ LSGG++QRV +ARA ++ I+LLDE TS LD + + E
Sbjct: 94 PFNE---------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1263 ALDRAC--SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELG 1301
L R GKT ++V H L+ R A + ++ DG++ G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-39
Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 57/254 (22%)
Query: 428 IELKHVDFSYP-SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
IELK++ +P + LNN SL +PAG+ ++G+SG+GKST++ I PTSG+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 487 VLLDGHDIKSLK---LRWLRQQIGLVSQEPALFAT-TIKENILL-----GRPDADLNEIE 537
VL+DG D+ +L LR R+QIG++ Q L ++ T+ +N+ L G P A EI+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA---EIK 118
Query: 538 EAARV------------ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585
ARV A+ Y P QLSGGQKQR+AIARA+ NP
Sbjct: 119 --ARVTELLELVGLSDKADRY------P-----------AQLSGGQKQRVAIARALASNP 159
Query: 586 AILLLDEATSALDSESEKLVQEALDRFMIGR----TTLVIAHRLSTIRK-ADVVAVLQ-- 638
+LL DEATSALD + + + E L I R T ++I H + +++ D VAV+
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKD--INRELGLTIVLITHEMDVVKRICDRVAVIDAG 217
Query: 639 ----QGSVSEIGTH 648
QG+VSE+ +H
Sbjct: 218 RLVEQGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-39
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKS---SVIALVQRFYEPS 1138
+ELK+V Y + +D++L AG+ +A+VGPSG GKS +++ + + P+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1139 SGRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIE 1193
SG V+I+GKD+ K + K L R+ + V Q L T+ EN+ A +S
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
+ + K +LSGGQ+QRVAIARA + +I+L DE T LD
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS----ELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 1254 AESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299
+++ + V E L GKT I+V H + A + + DGK+ E
Sbjct: 175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-39
Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 428 IELKHVDFSYPS-RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+E+++V +Y V L + SL+V G+ +ALVG SG GKST++ +I PTSG+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANA 545
VL+DG + G V Q+ AL T+ +N+ LG + + E R
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ G QLSGG +QR+A+ARA+ +P +LLLDE SALD+ + + +
Sbjct: 116 LELV-----GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170
Query: 606 QEALDRFMI----GRTTLVIAHRLS-TIRKADVVAVL 637
QE L I G+T L++ H + + AD V VL
Sbjct: 171 QEELLD--IWRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E+K++ S+ D + + +SL G+ + ++GPSG GKS+++ + EP SG +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1143 MIDGKDI-RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG--------HESATESEII 1192
+DG+D+ K ++ LRR + +V Q+ LF T+ EN+ A E +
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
++ ADK + P QLSGGQ+QRVAIARA ++ML DE TSAL
Sbjct: 120 LLEKVGLADKA-DAYPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 1253 DAESERSVQEAL-DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
D E V + + D A G T I+V H + R A + +D GK+ E G N
Sbjct: 168 DPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+E++ V S+ V +L + +L+V G+ +A++G SG GKST++ LI PTSG+
Sbjct: 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANA 545
VLLDG + IG V QE AL T+ +N+ LG ++ E R
Sbjct: 60 VLLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 546 Y------SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
F K P QLSGG +QR+AIARA+ P +LLLDE ALD+
Sbjct: 115 LELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163
Query: 600 ESEKLVQEALDR--FMIGRTTLVIAHRLS-TIRKADVVAVL 637
+ + +Q+ L R +T L++ H + + AD V VL
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL 204
|
Length = 248 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-38
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 16/199 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ V S+ + D++L G+ +A++GPSGCGKS+++ L+ +P+SG V
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANAD 1201
++DG+ + + V QE L T+ +N+A G E +S+ A A
Sbjct: 61 LLDGRPV-----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK---AEARERAK 112
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+ + + G F + QLSGG +QRVAIARA + +++LLDE ALDA + +Q
Sbjct: 113 ELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170
Query: 1262 EALDRACS--GKTTIVVAH 1278
+ L R KT ++V H
Sbjct: 171 DELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-38
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 48/218 (22%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE++++ Y + L++ SLTV G+ L+G +G+GK+T++ +I P SG++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAY 546
+ G DIK ++++IG + +EP+L+ T++EN+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+LSGG KQR+A+A+A+L +P +L+LDE TS LD ES +
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 607 EALDRFM-IGRTTLVIAHRLSTI-RKADVVAVLQQGSV 642
E L G+T L+ +H L R D VA+L G +
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 84/235 (35%), Positives = 119/235 (50%), Gaps = 46/235 (19%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE+K++ S+ +L LTV G+ + ++G SGSGKST++ I +P SG +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 488 LLDGHDI--KSLKLRWLRQQIGLVSQEPALFA-TTIKENILL------GRPDADLNEI-- 536
++DG + + LRQ++G+V Q+ LF T+ ENI L G A+ E
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 537 EEAARV-----ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
E +V A+AY P QLSGGQ+QR+AIARA+ NP ++L D
Sbjct: 118 ELLEKVGLADKADAY------PA-----------QLSGGQQQRVAIARALAMNPKVMLFD 160
Query: 592 EATSALDSESEKLVQEALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQG 640
E TSALD E LV E LD M G T +V+ H + R+ AD V + G
Sbjct: 161 EPTSALDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
E++ + SY S + IL + S+ G +VG SG+GKST++ LI R DPT G +L
Sbjct: 3 EIEFKEVSYSSFGKE-ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG---RPDADLNEIEEAARVANA 545
+DG DIK++ + LR++IG+V Q+P LF T+K+NI G + + +++
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD--------VEY 113
Query: 546 YSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
Y I+ G + + R V+ LSGG+ QR++IAR + NP +LLLDE TSALD S ++
Sbjct: 114 YLSIV----GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 605 VQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
++E + + + T + I H + ++ D A L +G + E
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-38
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 1083 VELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKS---SVIALVQRFYEPS 1138
+ELK++ +Y + + + +SL G+ +A+VGPSG GKS +++ + R P+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1139 SGRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIE 1193
SG V +DG DI K + K L RRH+ V Q L T EN+ + + +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 1194 AARLANADKFISS--LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
R A++ + L D + +LSGGQ+QRVAIARA +I+L DE T
Sbjct: 115 KERRERAEELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGN 170
Query: 1252 LDAESERSVQEALDR--ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
LD+E+ + V E L +G T +VV H A I + DGK+
Sbjct: 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 9e-38
Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 32/255 (12%)
Query: 427 LIELKHVDFSYPSRPEV-RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
L+ ++++ Y LNN SL + G+T+ +VG SGSGKST+ L+ P+SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 486 QVLLDGHDIKSLK-LRWLRQQIGLVSQEP--ALFA-TTIKENIL-----LGRPDADLNEI 536
+LLDG + K + + + +V Q+P +L T+ + G +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E +V LP F + R +LSGGQ+QRIAIARA++ P +L+LDE TSA
Sbjct: 123 ELLDQVG--------LPPSF---LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 597 LDSESEKLVQ-EALDRF-MIGR----TTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
LD VQ + L+ + + T L I+H L+ + D +AV+ G + EIG +
Sbjct: 172 LDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227
Query: 650 ELIAKGENGVYAKLI 664
EL++ + +L+
Sbjct: 228 ELLSHPSHPYTRELL 242
|
Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 1e-37
Identities = 83/231 (35%), Positives = 136/231 (58%), Gaps = 6/231 (2%)
Query: 1080 RGEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
RG VE + ++ R D+ + R +++ G+ + +VG +G GKSS+ + R E +
Sbjct: 1282 RGRVEFR--NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENI-AYGHESATESEIIEAARL 1197
G ++IDG +I K L LR + I+PQ+P LF+ ++ N+ + S + E+ A L
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS--DEEVWWALEL 1397
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A+ F+S+LPD E G LS GQ+Q V +ARA +RK +I++LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 1258 RSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 1308
+Q + T + +AHRL+TI + + V+D G+VAE G+ S+LL+
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 2e-37
Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 48/218 (22%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++++ Y + D+SL G+ L+GP+G GK+++I ++ +P SG +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANAD 1201
+ GKDI+K + ++R + +P+EP L+ + T+ EN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+LSGG KQR+A+A+A + E+++LDE TS LD ES R
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1262 EALDRACSGKTTIVVA-HRLSTIRN-AHVIAVIDDGKV 1297
E L TI+++ H L +A++++G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-37
Identities = 82/251 (32%), Positives = 132/251 (52%), Gaps = 35/251 (13%)
Query: 427 LIELKHVDFSYPSRP--------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
L+ ++++ Y SR EV+ +++ S + G+T+ LVG SGSGKST+ ++
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 479 FYDPTSGQVLLDGHD--IKSLKLRWLRQQIGLVSQEPALFAT-----TIKENILLGRPDA 531
P+SG ++ DG D + +LR LR++I +V Q+P +++ T+ + + P
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDIL--AEPLR 395
Query: 532 DLNEIEEA---ARVANAYSFIIKLPDGF-DTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587
A ARVA ++ LP F D E LSGGQ+QR+AIARA+ P +
Sbjct: 396 IHGGGSGAERRARVAELLE-LVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKL 450
Query: 588 LLLDEATSALDSESE----KLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
L+LDE SALD + L+++ + G T L I+H L+ +R AD VAV+ G +
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRI 508
Query: 643 SEIGTHDELIA 653
E G +++
Sbjct: 509 VEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 77/281 (27%), Positives = 125/281 (44%), Gaps = 10/281 (3%)
Query: 104 MAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWAS 163
+ I L + G + +F ++S ++ A + VG
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGN---GDERSSLISLAILLIAVGVLQGLL 57
Query: 164 SWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDT---EVRTSDVVYAINTDAVIVQD 220
+ GER ++R + A L Q + + ++ + D ++D
Sbjct: 58 LQG----SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRD 113
Query: 221 AISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQ 280
+ +KLG F LAT V GF V F W+L LV LA++PL+ ++ A+ A L KL K Q
Sbjct: 114 GLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQ 173
Query: 281 EALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYF 340
+A ++AG++ E+++ IR V AF E L+ Y AL+ A++ G K G+ G T
Sbjct: 174 KAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQL 233
Query: 341 VVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLAL 381
+ + SYAL LW+G YLV + G A + + L
Sbjct: 234 ISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-37
Identities = 76/232 (32%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+E+++V S+ +++ SL + G+ + L+G SG GK+T++ +I F P+SG
Sbjct: 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLG-RPDADLNEIEEAARVA 543
++LLDG DI + ++ IG+V Q ALF T++EN+ G + L + E ARV
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 544 NAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
A ++ L +R QLSGGQ+QR+A+ARA++ P +LLLDE SALD++
Sbjct: 119 EALE-LVGL-----EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172
Query: 603 KLVQEALDR--FMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ +++ L +G T + + H + + +D +AV+ G + ++GT +E+
Sbjct: 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 3e-37
Identities = 86/241 (35%), Positives = 125/241 (51%), Gaps = 14/241 (5%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IEL++V Y L+ SL + G+ L+G SG GK+T++ LI F PTSG++
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAY 546
LLDG DI L ++ + V Q ALF T+ ENI G L + E RVA A
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+ + + QLSGGQ+QR+AIARA++ P +LLLDE ALD + K +Q
Sbjct: 116 DLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 607 EALDRF--MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
L R +G T + + H + +D +AV+ +G + +IGT +E+ + N A
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADF 230
Query: 664 I 664
I
Sbjct: 231 I 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-37
Identities = 92/274 (33%), Positives = 153/274 (55%), Gaps = 23/274 (8%)
Query: 411 IDRNSESGLELDS--------VSGLIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIAL 461
ID SE+ L +++ SG I+ + V Y RPE+ +L+ S + + + +
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGI 1270
Query: 462 VGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIK 521
VG +G+GKS++++ + R + G++L+DG DI L LR+ +G++ Q P LF+ T++
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 522 ENILLGRP-----DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576
N+ P DADL E E A + + I + G D +V E G S GQ+Q ++
Sbjct: 1331 FNL---DPFNEHNDADLWESLERAHLKDV---IRRNSLGLDAEVSEAGENFSVGQRQLLS 1384
Query: 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAV 636
+ARA+L+ IL+LDEAT+A+D ++ L+Q+ + T L+IAHRL+TI D + V
Sbjct: 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV 1444
Query: 637 LQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670
L G V E T + L++ E ++K+++ AA
Sbjct: 1445 LDAGRVVEFDTPENLLSN-EGSAFSKMVQSTGAA 1477
|
Length = 1622 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 7e-37
Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 36/255 (14%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE++++ +YP+ + L + SL++ G+ +AL+G SG+GKST++ + +PTSG V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 488 LLDGHDIKSLK---LRWLRQQIGLVSQEPALFA-TTIKENILLGR--------------P 529
L+DG DI LK LR LR+QIG++ Q+ L ++ EN+L GR P
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 530 DADLNEIEEA-ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAIL 588
+ A RV G + +R QLSGGQ+QR+AIARA+++ P ++
Sbjct: 119 KEEKQRALAALERV------------GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLI 166
Query: 589 LLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645
L DE ++LD S + V + L R G T +V H++ R+ AD + L+ G +
Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226
Query: 646 GTHDELIAKGENGVY 660
G EL + + +Y
Sbjct: 227 GPPAELTDEVLDEIY 241
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 7e-37
Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 26/230 (11%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLR 1158
D+SL R G+ ++G SG GKS+++ + R EP+SG+V+IDG+DI + L+ LR
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1159 RH-MAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANA------DKFISSLPDG 1210
R +++V Q L T+ EN+A+G E R A A + + PD
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD- 159
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--AC 1268
+LSGG +QRV +ARA +I+L+DEA SALD R +Q+ L R A
Sbjct: 160 ----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1269 SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
KT + + H L +R IA++ DG++ ++G+ +L NP Y R
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL-TNPANDYVR 258
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 7e-37
Identities = 85/265 (32%), Positives = 139/265 (52%), Gaps = 26/265 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE+K++ +YP + L + +L + G+ +A++G SG+GKST++ + DPTSG++
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 488 LLDGHDIKSLK---LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEI------- 536
L +G I LK LR LR+ IG++ Q+ L ++ EN+LLGR +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR-LGYTSTWRSLFGLF 120
Query: 537 --EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
E+ A+ A + ++ G + +R LSGGQ+QR+AIARA+++ P I+L DE
Sbjct: 121 SKEDKAQ---ALDALERV--GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 595 SALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
++LD ES K V + L G T +V H++ +K AD + L+ G + G EL
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
Query: 652 IAKGENGVYAKLIRMQEAAHETALN 676
+ + +Y I E + N
Sbjct: 236 TDEALDEIYGNEIS--EDINRGVEN 258
|
Length = 258 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 7e-37
Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 31/243 (12%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD----- 481
IE+++++ Y E L N +L +P + AL+G SG GKST++ + R D
Sbjct: 1 AIEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 482 PTSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADL 533
G+VL DG DI K + + LR+++G+V Q+P F +I +NI G + +L
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+EI E + A L D ++ + + LSGGQ+QR+ IARA+ P +LLLDE
Sbjct: 118 DEIVEESLKKAA------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 594 TSALDSES----EKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTH 648
TSALD + E+L+QE ++ T +++ H + R +D A G + E G
Sbjct: 172 TSALDPIATGKIEELIQELKKKY----TIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227
Query: 649 DEL 651
+++
Sbjct: 228 EQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-36
Identities = 83/291 (28%), Positives = 132/291 (45%), Gaps = 46/291 (15%)
Query: 1058 LLDRKTEIEPDDPDATPVPDRLRGE--VELKHVDFSYPSRPDIPI--------FRDLSLR 1107
LL + + P LR E + ++++ Y SR + + D+S
Sbjct: 254 LLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFD 313
Query: 1108 ARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD--IRKYNLKSLRRHMAIVP 1165
R G+TL LVG SG GKS++ ++ PSSG ++ DG+D + L+ LRR + +V
Sbjct: 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF 373
Query: 1166 QEPCLFAS-----TIYENIAYGHESATESEIIEAARLANAD----------KFISSLPDG 1210
Q+P ++S T+ + +A A R A +F+ P
Sbjct: 374 QDP--YSSLNPRMTVGDILAE--PLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH- 428
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS- 1269
+LSGGQ+QRVAIARA + ++++LDE SALD + V L
Sbjct: 429 ----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 1270 -GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
G T + ++H L+ +R A +AV+ DG++ E G + + NP Y R
Sbjct: 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP-TEKVFENPQHPYTRK 528
|
Length = 539 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 62/272 (22%), Positives = 126/272 (46%), Gaps = 8/272 (2%)
Query: 766 SVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWD 825
++ G+ F +L + + + + ++ ++ L LQ SF+
Sbjct: 8 LILAGATALVFPLLLGRFLDSLIDGNGDERS---SLISLAILLIAVGVLQGLLLQGSFY- 63
Query: 826 IVGENLTKRVREKMLAAVLKNEIAWFDQ--EENESARIAARLALDANNVRSAIGDRIQVI 883
+GE L +R+R+++ A+L+ + + N + +RL D + +R +GD++ +
Sbjct: 64 -LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 884 VQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQL 943
Q+ A ++ F W+L LVL+A+ P+++ + + ++ + + A++KA +
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182
Query: 944 AGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALG 1003
A E++ +RTV AF E + + L+ + K AG +G+ Q Y SYAL
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 1004 LWYSSWLVKHGISDFSKTIRVFMVLMVSANGA 1035
LW+ ++LV G F+ L + +G
Sbjct: 243 LWFGAYLVISGGLSVGTVF-AFLSLGLQLSGP 273
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 2e-36
Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 33/244 (13%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
LIE++ V S+ R IL+ L VP G+ +A++G SGSGKST++ LI P G+
Sbjct: 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64
Query: 487 VLLDGHDIKSLK---LRWLRQQIGLVSQEPALF-ATTIKENI-LLGRPDADLNEIEEAAR 541
+L+DG DI L L +R+++G++ Q+ ALF + T+ EN+ R L E
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE-SLIRE 123
Query: 542 VANAYSFIIKLPDGFDTQVRERGV-------QLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+ ++KL V RG +LSGG ++R+A+ARA+ +P +L LDE T
Sbjct: 124 LV-----LMKL-----ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173
Query: 595 SALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
S LD ++L++E D G T +++ H L ++ AD VAVL G V GT +
Sbjct: 174 SGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231
Query: 650 ELIA 653
EL+A
Sbjct: 232 ELLA 235
|
Length = 263 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-36
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E ++V Y ++ D++L G+ L L+GPSG GK++ + ++ R EP+SG +
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAY------GHESATESEIIEAA 1195
+IDG+DI + LRR + V Q+ LF T+ ENIA + + E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 1196 RLA--NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
L + ++ P +LSGGQ+QRV +ARA I+L+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1254 AESERSVQEALDR--ACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
+ + +QE + GKT + V H + ++ A IAV+D G++ + + +L N
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-36
Identities = 80/248 (32%), Positives = 133/248 (53%), Gaps = 28/248 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ELK+V S+ S +L + +L + G+ + L+G SG GKST++ +I +PTSG++
Sbjct: 4 LELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEEAA 540
L+DG D+ L ++ I +V Q AL+ T+ ENI L G P A++++ ++E A
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
++ + + P +QLSGGQ+QR+A+ARA+++ P + LLDE S LD++
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 601 S-EKLVQE--ALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656
+ E L +G TT+ + H AD + V+ G + ++GT EL +
Sbjct: 168 LRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226
Query: 657 NGVYAKLI 664
N A I
Sbjct: 227 NLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 4e-36
Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 25/223 (11%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---KLRWL 502
+N+ SL V G+ ++G SGSGKST++ I R +PTSG+VL+DG DI ++ +LR L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 503 R-QQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYS------FIIKLPD 554
R ++I +V Q AL T+ EN+ G + E R A A + K PD
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF-- 612
+LSGG +QR+ +ARA+ +P ILL+DEA SALD + +Q+ L R
Sbjct: 160 -----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 613 MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ +T + I H L +R D +A+++ G + ++GT +E++
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-36
Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 23/218 (10%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+++SL G ++GP+G GKS ++ + F +P SG+++++GKDI NL +R +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1162 AIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTF 1214
+ VPQ LF T+Y+NIAYG + E +++E A + D ++ P+
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA--CSGKT 1272
LSGG++QRVAIARA V +I+LLDE SALD ++ ++E L + G T
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 1273 TIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+ V H A +A++ +GK+ ++G + K
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 74/253 (29%), Positives = 127/253 (50%), Gaps = 35/253 (13%)
Query: 1083 VELKHVDFSYPSRPDI-PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ ++++ Y ++SL G+TL +VG SG GKS++ L+ +PSSG
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1142 VMIDGKDI-RKYNLKSLRRHMAIVPQEPCLFAS---------TIYENIAYGHESATESEI 1191
+++DGK + K K+ R + +V Q+P ++S + E + S ++ I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP--YSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E LP + R +LSGGQ+QR+AIARA + + ++++LDE TSA
Sbjct: 122 AELLDQVG-------LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1252 LDAESERSVQ-EALD-----RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304
LD SVQ + L+ + G T + ++H L+ + + IAV+D+G++ E+G
Sbjct: 172 LDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227
Query: 1305 HLLKNNPDGCYAR 1317
L ++P Y R
Sbjct: 228 -ELLSHPSHPYTR 239
|
Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 23/234 (9%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS-- 1138
+E+++++ Y + ++++L + AL+GPSGCGKS+++ + R + P
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1139 -SGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESATES 1189
G+V+ DG+DI +K ++ LRR + +V Q+P F +IY+NIAYG +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
EI+E + L A +L D K + + + LSGGQ+QR+ IARA + E++LLDE T
Sbjct: 119 EIVEES-LKKA-----ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
SALD + ++E + T ++V H + R + A DG++ E G
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 87/258 (33%), Positives = 147/258 (56%), Gaps = 9/258 (3%)
Query: 410 SIDRNSESGLELDSVSGLIELKHVDFSYPS--RPEVRILNNFSLTVPAGKTIALVGSSGS 467
SI +S SGL + G I++ + Y + +P +L + + G+ + + G +GS
Sbjct: 4 SISGSSNSGLV--GLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGS 58
Query: 468 GKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG 527
GKS++ R D G++++DG DI L L LR ++ ++ Q+P LF+ +I+ N+
Sbjct: 59 GKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPE 118
Query: 528 RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587
D + + EA +A + + LP G D V E G S GQ+Q +ARA ++ +I
Sbjct: 119 CKCTD-DRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177
Query: 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
L++DEAT+++D +E ++Q+ + RT + IAHR+STI AD+V VL +G + E T
Sbjct: 178 LIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDT 237
Query: 648 HDELIAKGENGVYAKLIR 665
+ L+A+ E+GV+A L+R
Sbjct: 238 PENLLAQ-EDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-35
Identities = 71/214 (33%), Positives = 98/214 (45%), Gaps = 60/214 (28%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
E++++ F Y R L+N SLT+ AG+ +ALVG +GSGKST++ I PTSG++L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSF 548
+D G+ A L E R+ Y
Sbjct: 58 ID------------------------------------GKDIAKLPLEELRRRIG--YVP 79
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD S + + E
Sbjct: 80 -----------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 609 LDRFMI-GRTTLVIAHRLSTIRKA-DVVAVLQQG 640
L GRT +++ H A D V VL+ G
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 26/230 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL++V Y +SL + G+ L+GPSGCGK++++ L+ F P+SG +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
++DGKDI NL +R + V Q LF T++ENIA+G ++ + + EA
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L + + + P QLSGGQ+QRVAIARA V + +++LLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 1256 SERSVQEALDRACS--GKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
+ +Q L R G T + V H + + IAV++ GK+ ++G+
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-35
Identities = 83/246 (33%), Positives = 139/246 (56%), Gaps = 15/246 (6%)
Query: 1081 GEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
G ++ + V Y RP++P + LS + + +VG +G GKSS++ + R E
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIA--YGHESATESEIIEAARL 1197
GR++IDG DI K+ L LR+ + I+PQ P LF+ T+ N+ H A E +E A L
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
+ I G V E G S GQ+Q +++ARA +R+++I++LDEAT+A+D ++
Sbjct: 1354 KDV---IRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 1258 RSVQEALD---RACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314
+Q+ + ++C T +++AHRL+TI + I V+D G+V E + +LL N
Sbjct: 1411 ALIQKTIREEFKSC---TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE-GSA 1466
Query: 1315 YARMIQ 1320
+++M+Q
Sbjct: 1467 FSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-35
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 44/221 (19%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
E++++ Y R +L++ SL++ AG+ + ++G +G+GKST++ + P+SG++L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSF 548
LDG D+ SL + L ++I V Q AL + L RP
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--ALELLGLAH--LADRP------------------- 94
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
F+ LSGG++QR+ +ARA+ + P ILLLDE TS LD + + E
Sbjct: 95 -------FNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 609 LDRF--MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIG 646
L R G+T +++ H L+ R AD V +L+ G + G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 3e-35
Identities = 80/238 (33%), Positives = 125/238 (52%), Gaps = 13/238 (5%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
S +IE+K++ F Y E LN+ S V G+ ++++G +GSGKST V LI+ + S
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARV 542
GQ+++DG + + +R +IG+V Q P T+++++ G + + E RV
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERV 121
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
A + D + RE +LSGGQKQR+AIA A+ P I++LDEATS LD E
Sbjct: 122 NEALELV----GMQDFKEREPA-RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 603 ----KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGE 656
K ++ D + T + I H L + +D V V++ G V T EL ++G
Sbjct: 177 LELIKTIKGIRDDY--QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-35
Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 34/231 (14%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E+K++ S+ + + + L + G+ + ++GPSG GKS+++ + EP SG +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1143 MIDGKDI--RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG-----HESATESE---- 1190
+IDG + K N+ LR+ + +V Q+ LF T+ ENI S E+E
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 1191 -IIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
++E LA+ AD + + QLSGGQ+QRVAIARA ++ML DE
Sbjct: 118 ELLEKVGLADKADAYPA---------------QLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 1249 TSALDAESERSVQEAL-DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297
TSALD E V + + D A G T +VV H + R A + +DDG++
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 4e-35
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 57/240 (23%)
Query: 427 LIELKHVDFSYPSR------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480
L+E+K++ +P V+ ++ S ++ G+T+ LVG SG GKST+ LI
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 481 DPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA- 539
+PTSG++L +G DI L KE + E
Sbjct: 64 EPTSGEILFEGKDITKLS----------------------KEERR--------ERVLELL 93
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
+V G + R +LSGGQ+QRI IARA+ NP +++ DE SALD
Sbjct: 94 EKV------------GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
Query: 599 ----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
++ L+++ + G T L I+H LS +R +D +AV+ G + EIG +E+ +
Sbjct: 142 VSVQAQILNLLKDLQEEL--GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-35
Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 42/247 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS--- 484
IE++ ++ Y + L + +L +P K AL+G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 485 --GQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENI-----LLGRPDADLNE 535
G+VLLDG +I + + LR+++G+V Q+P F +I +N+ L G D +L+E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 536 I-EEAARVANAYSFIIKLPDGFDTQVRER----GVQLSGGQKQRIAIARAMLKNPAILLL 590
I E + + A L D +V++R + LSGGQ+QR+ IARA+ P +LL+
Sbjct: 125 IVESSLKKAA-------LWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173
Query: 591 DEATSALDSES----EKLVQEALDRFMIGRTTLVI-AHRLS-TIRKADVVAVLQQGSVSE 644
DE TSALD S E+L+ E ++ T+VI H + R +D A G + E
Sbjct: 174 DEPTSALDPISTLKIEELITELKKKY-----TIVIVTHNMQQAARVSDYTAFFYLGELVE 228
Query: 645 IGTHDEL 651
G D++
Sbjct: 229 FGPTDKI 235
|
Length = 253 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 5e-35
Identities = 66/211 (31%), Positives = 120/211 (56%), Gaps = 14/211 (6%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
LK++ + + IL++ +LT+ GK A++G SGSGKST++++I SGQV L
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 490 DGHDIKSLKLR----WLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVAN 544
+G + L + + R+++G + Q AL T++EN+ LG L++ E+ +
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
A + G + +++++ +LSGG++QR+A+ARA+LK P ++L DE T +LD ++
Sbjct: 118 ALEKV-----GLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDE 172
Query: 605 VQEALDRFM-IGRTTLVIAHRLSTIRKADVV 634
V + L G+T +++ H ++AD V
Sbjct: 173 VLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 47/252 (18%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ V S+ R I + L G+ LA++G SG GKS+++ L+ P G +
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1143 MIDGKDIRKYN---LKSLRRHMAIVPQEPCLFAS-TIYENIAYG---HESATESEI---- 1191
+IDG+DI + + L +R+ M ++ Q+ LF+S T++EN+A+ H ES I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1192 ---IEAARL--ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLD 1246
+E L A AD + S +LSGG ++RVA+ARA E++ LD
Sbjct: 126 LMKLELVGLRGAAADLYPS---------------ELSGGMRKRVALARAIALDPELLFLD 170
Query: 1247 EATSALD-------AESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
E TS LD E R + +AL G T I+V H L ++ A +AV+ DGKV
Sbjct: 171 EPTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKVI 225
Query: 1299 ELGSHSHLLKNN 1310
G+ LL ++
Sbjct: 226 AEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 77/242 (31%), Positives = 136/242 (56%), Gaps = 3/242 (1%)
Query: 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
L GE+++ + Y + P+ + + + G+ + + G +G GKSS+ R +
Sbjct: 16 LGGEIKIHDLCVRYENNLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA 1198
G+++IDG DI K L +LR ++I+ Q+P LF+ +I N+ T+ + EA +A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD-PECKCTDDRLWEALEIA 133
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
+ SLP G V E G S GQ+Q +ARAFVRK+ I+++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
+Q+ + A + +T + +AHR+STI +A ++ V+ G + E + +LL DG +A +
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE-DGVFASL 252
Query: 1319 IQ 1320
++
Sbjct: 253 VR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 28/233 (12%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++++ +YP+ +D+SL G+ +AL+GPSG GKS+++ + EP+SG V+
Sbjct: 2 EVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1144 IDGKDIRKY---NLKSLRRHMAIVPQEPCLFA-STIYENI---AYGHESA--------TE 1188
IDG DI K L+ LRR + ++ Q+ L ++ EN+ G S +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1189 SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
E A LA ++ G +R QLSGGQ+QRVAIARA +++ +++L DE
Sbjct: 120 EEKQRA--LAALERV------GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 1249 TSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVA 1298
++LD S R V + L R G T IV H++ R A I + DG++
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 3e-34
Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 36/234 (15%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
VEL++V + + DL+L G+ + L+GPSGCGK++ + ++ EP+SGR+
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESE------IIEAA 1195
I G+D+ +L R +A+V Q L+ T+Y+NIA+G + + + E A
Sbjct: 58 YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L + + P QLSGGQ+QRVA+ RA VR+ ++ L+DE S LDA+
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 1256 ------SE-RSVQEALDRACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELG 1301
+E + +Q+ L G TTI V H ++ + A IAV++DG++ ++G
Sbjct: 165 LRVQMRAELKRLQQRL-----GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 5e-34
Identities = 85/270 (31%), Positives = 136/270 (50%), Gaps = 28/270 (10%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWL 502
+N+ SL V G+ ++G SGSGKST+V L+ R +PT G++L+DG DI L LR L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 503 RQ-QIGLVSQEPALFA-TTIKENI-----LLGRPDADLNEI-EEAARVANAYSFIIKLPD 554
R+ +I +V Q AL T+ EN+ + G P A+ E EA + + K P+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF-- 612
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L
Sbjct: 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 613 MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR-MQEAA 670
+ +T + I H L +R D +A+++ G + ++GT +E++ N +R + +
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSR 272
Query: 671 HETALNNARKSSARPSSARNSVSSPIIARN 700
TA + R+ + P +A
Sbjct: 273 VLTAKDIMRR--PDLLIRKTPGDGPRVALK 300
|
Length = 386 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 8e-34
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 25/234 (10%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---KLRWL 502
+N+ L + G+ ++G SGSGKST V ++ R +PT+GQ+ +DG +I +LR +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 503 -RQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIE------EAARVANAYSFIIKLPD 554
R++IG+V Q+ ALF TI +N LG E E E ++ + + PD
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM- 613
+LSGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L +
Sbjct: 129 -----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 614 -IGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
+ +T + I H L IR D + +++ G + ++GT DE++ N + I
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-34
Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 38/258 (14%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE++++ SY +RP +L + SL+V G+ AL+G +G+GKST++ I P+SG+
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPAL---FATTIKENILLGRP----------DADL 533
+ + G K ++ R R +IG V Q+ ++ F T+K+ +LLGR D
Sbjct: 61 IKIFG---KPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+++EA D Q+ E LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 594 TSALDSESEKLVQEALDR-FMIGRTTLVIAHRLSTIRK-ADVVAVLQQ-----GSVSEIG 646
+ +D +K + + L G+T L++ H L + D V L + G E+
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVL 226
Query: 647 THDELI-AKGENGVYAKL 663
T + L A G + +A
Sbjct: 227 TEENLEKAFGGSLAHALA 244
|
Length = 254 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
E+E K V +S I +D+S++ G +VGPSG GKS++I L+ R +P+ G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANAD 1201
++IDG DI+ ++ LRR + +V Q+P LF T+ +NI YG +++ + + +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-------PMLKGEKNVDVE 112
Query: 1202 KFIS--SLPDGYKTFVGERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
++S L Y T R V+ LSGG+ QRV+IAR E++LLDE TSALD S
Sbjct: 113 YYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 1259 SVQEALDRACS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELG 1301
++E + + + T I + H + R A ++ G + E
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-33
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 25/222 (11%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLR 1158
D SL G+ ++G SG GKS+++ L+ R EP+ G +++DGKDI K + L+ LR
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1159 RH-MAIVPQEPCLFAS-TIYENIAYGHESA------TESEIIEAARLANADKFISSLPDG 1210
R +++V Q L T+ EN+A+G E E +EA L + + P+
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN- 163
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--AC 1268
+LSGG +QRV +ARA +I+L+DEA SALD +Q+ L A
Sbjct: 164 ----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 1269 SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
KT + + H L +R IA++ DG++ ++G+ +L N
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 24/228 (10%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+ELK V + ILNN SL+V AG+ IA+ G SG GKST++ ++ PTSG
Sbjct: 3 LLELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT 59
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILL------GRPDADLNEIEEAA 540
+L +G D+ +LK RQQ+ +Q PALF T+++N++ RPD ++ A
Sbjct: 60 LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLA 118
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
R A LP D+ + + +LSGG+KQRIA+ R + P ILLLDE TSALD
Sbjct: 119 RFA--------LP---DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167
Query: 601 SEKLVQEALDRFMI--GRTTLVIAH-RLSTIRKADVVAVLQQGSVSEI 645
+++ ++E + R++ L I H + IR AD V LQ G E+
Sbjct: 168 NKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 25/226 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E +V +YP + D+SL R G+ L L GPSG GK++++ L+ PS G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1143 MIDGKDI---RKYNLKSLRRHMAIVPQE-PCLFASTIYENIA------YGHESATESEII 1192
I G+D+ R L LRR + +V Q+ L T+YEN+A E + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
A R L F QLSGG++QRVAIARA V ++L DE T L
Sbjct: 120 AALRQVG-------LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1253 DAESERSVQEALDRACSGKTTIVVA-HRLSTIRN-AHVIAVIDDGK 1296
D + + + L R TT++VA H LS + AH + ++DDG+
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 18/232 (7%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE+++V + L++ SL +P+G+ +AL+G SGSGK+T++ LI P SG +
Sbjct: 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLG---RPDADL-NEIEEAARV 542
L G D + ++ + +G V Q ALF T+ +N+ G +P ++ E E A+V
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
++L D + QLSGGQ+QR+A+ARA+ P +LLLDE ALD++
Sbjct: 118 HELLKL-VQL-DWLADRYPA---QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172
Query: 603 KLVQEALDRFM--IGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDEL 651
K ++ L R + TT+ + H + AD V V+ +G + ++GT DE+
Sbjct: 173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-33
Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 54/261 (20%)
Query: 427 LIELKHVDFSYP-SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP--- 482
L+E+K++ S+P V+ ++ S + G+ + +VG SGSGKS + I
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 483 --TSGQVLLDGHDIKSL------KLRWLRQQIGLVSQEP--AL---------FATTIKEN 523
G++L DG D+ SL K+R ++I ++ Q+P +L A ++ +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRG--KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118
Query: 524 ILLGRPDADLNE---------IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQR 574
I + R +Y +LSGG +QR
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-----------------ELSGGMRQR 161
Query: 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-A 631
+ IA A+ NP +L+ DE T+ALD + + + L G ++I H L + + A
Sbjct: 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA 221
Query: 632 DVVAVLQQGSVSEIGTHDELI 652
D VAV+ G + E G +E+
Sbjct: 222 DRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 34/237 (14%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++++ YP+ + L N +L + G+ +A++G SG+GKST++ I R +P+SG
Sbjct: 1 MLEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS 58
Query: 487 VLLDGHDIKSL---KLRWLRQQIGLVSQEPALFA-TTIKENILLGR-------------- 528
+LL+G DI L KLR LR++IG++ Q L T+ EN+L GR
Sbjct: 59 ILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF 118
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAIL 588
+ D A S + ++ G + +R QLSGGQ+QR+AIARA+ + P ++
Sbjct: 119 SEEDKER---------ALSALERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167
Query: 589 LLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
L DE ++LD ++ K V + L R G T ++ H++ +K AD + L+ G +
Sbjct: 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 5e-33
Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 38/247 (15%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E+K++ +YP +D++L G+ +A++GPSG GKS+++ + +P+SG +
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1143 MIDGKDIRKYN---LKSLRRHMAIVPQEPCLFA-STIYENIAYG---HES---------- 1185
+ +G I K L+ LRR + ++ Q+ L ++ EN+ G + S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 1186 -ATESEIIEA-ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243
+++ ++A R+ DK +R LSGGQ+QRVAIARA V++ +I+
Sbjct: 122 KEDKAQALDALERVGILDK------------AYQRASTLSGGQQQRVAIARALVQQPKII 169
Query: 1244 LLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN--AHVIAVIDDGKVAE 1299
L DE ++LD ES + V + L G T IV H++ + +I + G++
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG-LKAGRIVF 228
Query: 1300 LGSHSHL 1306
G S L
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-33
Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I + +V + + L++ SL + +G+ +AL+G SG+GKST++ +I P +G++
Sbjct: 3 IRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 488 LLDGHDIKSLKLRWLRQ-QIGLVSQEPALFA-TTIKENILLG--RPDADLNEIEEAARVA 543
L+G + + +R ++G V Q ALF T+ +NI G +E E ARV
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 544 NAYSFIIKLPDGFDTQVRER-GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD---- 598
+++L + +R QLSGGQ+QR+A+ARA+ P +LLLDE ALD
Sbjct: 120 ELLR-LVQL-----EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
E + +++ DR G TT+ + H + AD V VL QG + ++G DE
Sbjct: 174 KELRRWLRKLHDRL--GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 6e-33
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 24/234 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS--- 1139
+E++ ++ Y + +D++L K AL+GPSGCGKS+++ + R +
Sbjct: 8 IEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1140 --GRVMIDGKDIR--KYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE-----SATESE 1190
G V++DGK+I K ++ LRR + +V Q+P F +IY+N+AYG E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 1191 IIEAA-RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
I+E++ + A +L D K + + + LSGGQ+QR+ IARA K E++L+DE T
Sbjct: 125 IVESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
SALD S ++E + T ++V H + R + A G++ E G
Sbjct: 178 SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-33
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 24/234 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ L V FSY P F LTVPAG+ +A++G SG+GKST+++LI F P SG++
Sbjct: 2 LALDDVRFSYGHLPM-----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGR-PDADLNEIEEAARVANA 545
L++G D + + + ++ QE LFA T+ +NI LG P LN + A A
Sbjct: 57 LINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ GF ++ +LSGGQ+QR+A+AR +++ ILLLDE SALD L
Sbjct: 115 AQVGL---AGFLKRLPG---ELSGGQRQRVALARCLVREQPILLLDEPFSALD---PALR 165
Query: 606 QEALD-----RFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
E L T L++ H + AD V L G ++ G+ EL++
Sbjct: 166 AEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 9e-33
Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 33/238 (13%)
Query: 1083 VELKHVDFSYP-SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ELK++ +P I ++SL AG+ ++G SG GKS++I + P+SGR
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1142 VMIDGKDIRKYN---LKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATES-------- 1189
V++DG+D+ + L+ RR + ++ Q L +S T+++N+A E A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1190 -EIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
E++E L++ AD++ + QLSGGQKQRVAIARA +++L DE
Sbjct: 122 TELLELVGLSDKADRYPA---------------QLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 1248 ATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
ATSALD + RS+ E L G T +++ H + ++ +AVID G++ E G+
Sbjct: 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 9e-33
Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I++++V FSYP+ E L N S + G+ +A++G +GSGKST+ ++ P SG++
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNE------IEEA 539
+DG I L+ +R++IG++ Q P T++++I G + + I++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
A+ ++ K P LSGGQKQR+AIA + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 600 ESEKLVQEALD--RFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ ++ +++ + R +T + I H + AD V V +G + G E+
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 1e-32
Identities = 84/247 (34%), Positives = 134/247 (54%), Gaps = 13/247 (5%)
Query: 427 LIELKHVD-FSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+I+L ++ + ++ LNN SL VPAG+ ++G+SG+GKST++ + PTSG
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 486 QVLLDGHDIKSLK---LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAAR 541
V++DG D+ +L L R+QIG++ Q L ++ T+ N+ L + + E +
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
V + + G + LSGGQKQR+AIARA+ NP +LL DEATSALD +
Sbjct: 121 VTELLALV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 602 EKLVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658
+ + E L +G T L+I H + +++ D VAV+ G + E GT E+ + +
Sbjct: 176 TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTP 235
Query: 659 VYAKLIR 665
+ K IR
Sbjct: 236 LAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-32
Identities = 86/274 (31%), Positives = 147/274 (53%), Gaps = 14/274 (5%)
Query: 409 PSIDRNSE--SGLELDSVSGLIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIALVGSS 465
+I N+ SG G I+ + V Y RP + +L+ S V + + +VG +
Sbjct: 1217 TAIIENNRPVSGWPS---RGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRT 1271
Query: 466 GSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI- 524
G+GKS++++ + R + G++++D D+ L LR+ + ++ Q P LF+ T++ NI
Sbjct: 1272 GAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNID 1331
Query: 525 -LLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583
DADL E E A + + I + P G D +V E G S GQ+Q +++ARA+L+
Sbjct: 1332 PFSEHNDADLWEALERAHIKDV---IDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
IL+LDEAT+++D ++ L+Q + T LVIAHRL+TI D + VL G V
Sbjct: 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448
Query: 644 EIGTHDELIAKGENGVYAKLIRMQEAAHETALNN 677
E + EL+++ + + +++ A+ L+N
Sbjct: 1449 EYDSPQELLSR-DTSAFFRMVHSTGPANAQYLSN 1481
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-32
Identities = 75/231 (32%), Positives = 134/231 (58%), Gaps = 4/231 (1%)
Query: 425 SGLIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
G +E + ++ R ++ +L + ++T+ G+ + +VG +G+GKS++ + R +
Sbjct: 1282 RGRVEFR--NYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
G++++DG +I + L LR +I ++ Q+P LF+ +++ N+ +D E+ A +A
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSD-EEVWWALELA 1398
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
+ +F+ LPD D + E G LS GQ+Q + +ARA+L+ IL+LDEAT+A+D E++
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
L+Q + T L IAHRL+TI V VL +G V+E G L+ +
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-32
Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 27/250 (10%)
Query: 425 SGLIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKST----VVSLIERF 479
S L+E++++ + + V + + S V G+ + +VG SGSGKST ++ L+
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 480 YDPTSGQVLLDGHDIKSLKLRWLRQ----QIGLVSQEP-ALF--ATTI----KENILLGR 528
TSG+V+LDG D+ L R +R+ +I ++ Q+P TI +E + L
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 529 PDADLNEIEEA-ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587
+ EA R + LPD QLSGG +QR+ IA A+ P +
Sbjct: 123 KGSR----AEARKRAVELLE-QVGLPDPERRDRYPH--QLSGGMRQRVMIAMALALKPKL 175
Query: 588 LLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644
L+ DE T+ALD ++ + + L G L I H L + + AD V V+ +G + E
Sbjct: 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235
Query: 645 IGTHDELIAK 654
G +E+++
Sbjct: 236 TGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 26/237 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E+ + F Y +R R L++ S TV G+ +AL+G +G+GKST+ SL+ R Y GQ+
Sbjct: 2 LEVAGLSFRYGAR---RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENIL-------LGRPDADLNEIEEA 539
+ GHD++ L ++G+V Q+P L ++++N+ L R +A E
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
AR+ L + D +VRE L+GG ++R+ IARA+L PA+LLLDE T LD
Sbjct: 118 ARLG--------LAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Query: 600 ESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
S + + G + L H + I D + VL +G V G EL
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-32
Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 15/212 (7%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L++ +L VP G +AL+G SGSGKST++ +I P SG++ L+G D + R ++
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFI--IKLPDGFDTQVRE 562
IG V Q ALF T+++NI G + + ARV + L D +
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN---- 129
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLV 620
QLSGGQ+QR+A+ARA+ P +LLLDE ALD++ K ++ L + + TT+
Sbjct: 130 ---QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF 186
Query: 621 IAHRLS-TIRKADVVAVLQQGSVSEIGTHDEL 651
+ H + AD + V+ G + +IG+ DE+
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 8e-32
Identities = 82/256 (32%), Positives = 123/256 (48%), Gaps = 41/256 (16%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
S L++L++V + ILNN S ++ AG+ + G SG GKST++ ++ PTS
Sbjct: 5 SPLLQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILL------GRPDADLNEIEE 538
G +L +G DI +LK RQQ+ +Q P LF T+ +N++ +PD
Sbjct: 62 GTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD-------P 114
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A + + F LP DT + + +LSGG+KQRI++ R + P +LLLDE TSALD
Sbjct: 115 AIFLDDLERF--ALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658
++ V E I HR + V+ V EI D++I
Sbjct: 170 ESNKHNVNE-------------IIHRYVREQNIAVLWVTH--DKDEINHADKVIT----- 209
Query: 659 VYAKLIRMQEAAHETA 674
+ MQEA +E A
Sbjct: 210 LQPHAGEMQEARYELA 225
|
Length = 225 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 25/236 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E+++++ Y + +IL SLTVP G+ +AL+G +G+GK+T++ I P SG +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 488 LLDGHDIKSLKL-RWLRQQIGLVSQEPALFAT-TIKENILLG---RPDADLNEIEEAARV 542
DG DI L R IG V + +F T++EN+LLG R A AR+
Sbjct: 58 RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK-----RKARL 112
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
Y +L + + ++ LSGG++Q +AIARA++ P +LLLDE + L +
Sbjct: 113 ERVYELFPRLKE----RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---AP 165
Query: 603 KLVQEALDRFM----IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
K+V+E + G T L++ + AD VL++G V GT EL+A
Sbjct: 166 KIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-31
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 30/237 (12%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+EL+ + S+ V+ L+ SLTV G+ AL+G +G+GKST++ ++ Y P SG+
Sbjct: 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 487 VLLDG--HDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDA------DLNEIE 537
+L+DG S + L I V QE +L ++ ENI LGR D +
Sbjct: 65 ILIDGKPVAFSSPRDA-LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR 123
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
AR A + L DT V + LS Q+Q + IARA+ + +L+LDE T+AL
Sbjct: 124 RRARELLAR---LGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL 176
Query: 598 D-SESEKL---VQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
E+E+L ++ + G + I+HRL + + AD + VL+ G V +GT
Sbjct: 177 TVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRV--VGTRP 228
|
Length = 500 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 23/225 (10%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I ++V +YP E L + S +P G+ + L G SG+GKST++ LI PT G+
Sbjct: 1 MIRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58
Query: 487 VLLDGHDIKSLKLR---WLRQQIGLVSQEPALFAT-TIKENILL-----GRPDADLNEIE 537
+L++GHD+ LK R +LR+QIG+V Q+ L T+ EN+ L G+P ++
Sbjct: 59 ILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR-- 116
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
RV+ + G + R QLSGG++QR+AIARA++ PA+LL DE T L
Sbjct: 117 ---RVSEVLDLV-----GLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 598 DSESEKLVQEALDRFMIGRTTLVIA-HRLSTIRKADV-VAVLQQG 640
D + + + TT+++A H L + + V L+ G
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK--LR 500
+ L++ S +V G+ L+G +G+GK+T+ +LI F PTSG VL DG DI L
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 501 WLRQQIGLVSQEPALFAT-TIKENILLG-------RPDADLNEIEEAARVANAYSFI--I 550
R IG Q P LF T+ EN+++ EE A + +
Sbjct: 73 A-RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLVQ--E 607
L D D E LS GQ++R+ IARA+ +P +LLLDE + L E+E+L +
Sbjct: 132 GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIR 187
Query: 608 ALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
L G T L++ H + + AD V VL QG V GT DE+
Sbjct: 188 ELRER--GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 11/231 (4%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E+ + SY S+ V+ + + S G+ L+G +G+GK+T++ +I P SG+
Sbjct: 1 MLEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANA 545
V +DG D ++R++IG++ E L+A T +EN+ L+ E AR+A
Sbjct: 59 VTIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL 117
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
S ++L + D +V E S G KQ++AIARA++ +P+IL+LDE TS LD + +
Sbjct: 118 -SKRLQLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172
Query: 606 QEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654
+ + + GR + +H + + D V VL +G V G+ + L A+
Sbjct: 173 HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 14/236 (5%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I K+V F Y S L + S +P G+ ++VG +GSGKST+ L+ SG+
Sbjct: 7 IIVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVAN 544
+ + I LR+ IG+V Q P + +K ++ G + + E RV+
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK- 603
A + + + D + LSGGQKQR+AIA + NP++++LDEATS LD ++ +
Sbjct: 126 ALK-QVDMLERADYEPN----ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180
Query: 604 ---LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGE 656
LV++ I T + I H LS +AD V V+ +G+V + GT E+ E
Sbjct: 181 LLDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
Length = 269 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 28/231 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
VEL+ + S+ + + +L L G+ L L+GPSGCGK++V+ L+ F P SGR+
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
M+DG+DI ++ + RH+ V Q LF T++EN+A+G + ++EA
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
R+ ++F P QLSGGQ+QRVAIARA V K +++LLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 1256 SERSVQ---EALDRACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGS 1302
+ +Q +AL R G T + V H + + + I V+ DG++ + G+
Sbjct: 179 LRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 21/200 (10%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
++++ FSY + IL++ SL + AG+ IAL G +G+GK+T+ ++ +SG +L
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLG--RPDADLNEIEEAARVAN 544
L+G K +K + R+ IG V Q+ LF +++E +LLG DA + E + +
Sbjct: 59 LNG---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
Y+ + P LSGGQKQR+AIA A+L +L+ DE TS LD ++ +
Sbjct: 116 LYALKERHP--LS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 605 VQEALDRFM-IGRTTLVIAH 623
V E + G+ +VI H
Sbjct: 165 VGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 5e-31
Identities = 77/234 (32%), Positives = 131/234 (55%), Gaps = 16/234 (6%)
Query: 428 IELKHVDFSY-PSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I+++++ Y P E + L+N ++ + G+ + L+G +GSGKST++ + PTSG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 486 QVLLDGHDI--KSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAAR 541
++++DG DI K +KL +R+++GLV Q P LF TI+++I G + L+E E R
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD--- 598
V A + I+ L ++ + +LSGGQK+R+AIA + P IL+LDE T+ LD
Sbjct: 123 VKRAMN-IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 599 -SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
E ++E + T ++++H + + K AD + V+ +G GT E
Sbjct: 180 RDEILNKIKELHKEY--NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 6e-31
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ ++V +YP RD+S G+ + L GPSG GKS+++ L+ P+ G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1143 MIDGKDI---RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEII 1192
+++G D+ + + LRR + +V Q+ L T+YEN+A +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
E L +LP QLSGG++QRVAIARA V + ++L DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1253 DAE-SERSVQ--EALDRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSH 1303
D + S ++ E ++R G T ++ H L + R H + ++DG++ S
Sbjct: 169 DPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-31
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 25/197 (12%)
Query: 1092 YPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK 1151
YP P++ + L+ A G+ LAL+G +G GKS+++ + P SG V+IDG+ +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL-D 57
Query: 1152 YNLKSL---RRHMAIVPQEP--CLFASTIYENIAYG------HESATESEIIEAARLANA 1200
Y+ K L R+ + +V Q+P LFA+ + +++A+G E+ E + EA A
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
LSGG+K+RVAIA A + +++LLDE T+ LD +
Sbjct: 118 SGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 1261 QEALDRACSGKTTIVVA 1277
L R + T+V++
Sbjct: 167 LAILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+++++V FSYP+ + +++S G+ +A++G +G GKS++ ++ +P SG +
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATES-----EII-EA 1194
IDG I K NLK +R+ + I+ Q P +T+ ++IA+G E+ +II +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A+ + ++ P LSGGQKQRVAIA EI++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1255 ESERSVQEALD--RACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
+ +R +++ + R KT I + H + A + V +GK+ G +L N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 26/231 (11%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+EL+ + S+ + +++N LT+ G+ + L+G SG GK+TV+ LI F P SG+
Sbjct: 14 LVELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLG-----RPDADLNEIEEAA 540
++LDG DI + + + V Q ALF T+ EN+ G P A EI
Sbjct: 71 IMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA---EITP-- 123
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
RV A +++L + + QLSGGQ+QR+AIARA++ P +LLLDE+ SALD +
Sbjct: 124 RVMEALR-MVQLEEFAQRKPH----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 601 SEKLVQ---EALDRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGT 647
K +Q +AL R +G T + + H + + +D + V++ G + + GT
Sbjct: 179 LRKQMQNELKALQR-KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 66/220 (30%), Positives = 116/220 (52%), Gaps = 22/220 (10%)
Query: 1072 ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131
+ ++++++++F Y ++++L + A +GPSGCGKS+++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 1132 QRFYE--P---SSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-- 1182
R YE P + G +++DG++I K ++ LR + +V Q+P F +IY+NIA+G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 1183 -HESATESEI---IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238
E + +E+ +E A L A +L + K + + G LSGGQ+QR+ IAR
Sbjct: 120 LFEKLSRAEMDERVEWA-LTKA-----ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173
Query: 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
+ E++LLDE SALD S ++E + T ++V H
Sbjct: 174 RPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 22/221 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE +V +YP L+ ++++ AG+ + LVG SG+GKST++ LI + PTSG +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 488 LLDGHDIKSLKLR---WLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVA 543
++G D+ L+ R +LR++IG+V Q+ L + EN+ + E RV
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
A + G + R +LSGG++QR+AIARA++ +P IL+ DE T LD ++
Sbjct: 119 AALELV-----GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
Query: 604 LVQEALDRFMIGRTTLVIA-----------HRLSTIRKADV 633
+ L + TT+V+A HR+ + + +
Sbjct: 174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 23/246 (9%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS 1138
G++ +K +D Y D + ++L + AL+GPSGCGKS+ + + R + PS
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1139 ---SGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESAT 1187
G V++DG+DI ++ LR+ + +V Q+P F +IY+N+AYG +
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
EI+E + A L D K + + + LSGGQ+QR+ IARA + E++L+DE
Sbjct: 119 LDEIVEKSLKGAA------LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRL-STIRNAHVIAVIDDGKVAELGSHSHL 1306
TSALD S ++E + T ++V H + R + A +G++ E G L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 1307 LKNNPD 1312
N D
Sbjct: 233 FTNPKD 238
|
Length = 250 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 11/223 (4%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L N SL V G ++G +GSGKS ++ I F P SG++LL+G DI +L ++
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
I V Q ALF T+ +NI G +++ E +V + G D + +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKP 127
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES-EKLVQEALD-RFMIGRTTLVIA 622
LSGG++QR+AIARA++ NP ILLLDE SALD + EKL +E R G T L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVT 187
Query: 623 HRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
H AD VA++ G + ++G +E+ K +N A+ +
Sbjct: 188 HDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E +V +YP +++ AG+ + LVGPSG GKS+++ L+ + P+SG +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1143 MIDGKDIRKYNLKS---LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLA 1198
++G+D+ ++ LRR + +V Q+ L +YEN+A+ E R+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
A + + L ++ +LSGG++QRVAIARA V I++ DE T LD ++
Sbjct: 119 AALELVG-LSHKHRAL----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAH---VIAVIDDGKV 1297
+ L + TT+VVA + + VIA ++ GK+
Sbjct: 174 EIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA-LERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 26/220 (11%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
E++ + SY P +L + S V G+ +A+VG +G+GKST++ I PTSG +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 489 LDGHDIKSLKLRWLRQQIGLVSQEPAL---FATTIKENILLGRPDADLNEI-----EEAA 540
+ G L R++IG V Q ++ F ++++ +L+G + A
Sbjct: 58 VFG-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGL-YGHKGLFRRLSKADKA 111
Query: 541 RVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+V A ++ + + +R + +LSGGQ+QR+ +ARA++++P +LLLDE + +D
Sbjct: 112 KVDEA----LERVGLSE--LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 600 ESEKLVQEALDRF-MIGRTTLVIAHRLSTIRK-ADVVAVL 637
++++ + E L G T LV+ H L + + D V +L
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-30
Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-- 1138
G + + H+ +Y + + DLSL AG+ LAL+G SGCGK++++ + F + +
Sbjct: 4 GGIRIDHLRVAYGANT---VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARL 1197
+GR+ I +D+ + +R +A++ Q LF + +N+A+G + + A R+
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A+A K + G QLSGG +QR+AIARA + +++LLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 1258 RSVQE---ALDRACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313
+++E AL T + V H + + A ++ DG++A G L DG
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233
Query: 1314 CYARMI 1319
A +
Sbjct: 234 FAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 21/200 (10%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
++++ FSY +I DLSL AG+ +AL G +G GK+++ ++ + SSG ++
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATESEIIEAARLANAD 1201
++GK I K R+ + V Q+ LF ++ E + G + A A+
Sbjct: 59 LNGKPI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-------DAGNEQAE 108
Query: 1202 KFISSL-PDGYKTFVGERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
+ L K ER LSGGQKQR+AIA A + ++++ DE TS LD ++
Sbjct: 109 TVLKDLDLYALK----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 1260 VQEALDR-ACSGKTTIVVAH 1278
V E + A GK IV+ H
Sbjct: 165 VGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 4e-30
Identities = 80/261 (30%), Positives = 132/261 (50%), Gaps = 24/261 (9%)
Query: 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123
E+EPD + + + + + F++ +R P ++ G +A+VG GCG
Sbjct: 618 ELEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCG 676
Query: 1124 KSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH 1183
KSS+++ + + G V + G +A VPQ+ + ++ ENI +G
Sbjct: 677 KSSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRENILFGK 723
Query: 1184 --ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241
+++EA L D + LP G +T +GE+GV LSGGQKQRV++ARA A+
Sbjct: 724 ALNEKYYQQVLEACALL-PD--LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780
Query: 1242 IMLLDEATSALDAESERSVQEAL---DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVA 1298
I L D+ SA+DA + + E + + KT I+V H +S + VI V+ GK++
Sbjct: 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKIS 840
Query: 1299 ELGSHSHLLKNNPDGCYARMI 1319
E+GS+ LL+ DG +A +
Sbjct: 841 EMGSYQELLQR--DGAFAEFL 859
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 4e-30
Identities = 70/229 (30%), Positives = 115/229 (50%), Gaps = 26/229 (11%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL----R 1158
D L G+ ++G SG GKS+ + ++ R EP++G++ IDG++I K + L R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESE------IIEAARLANADKFISSLPDGY 1211
+ + +V Q+ LF TI +N + G E E +E +L +++ PD
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-- 128
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACS 1269
+LSGG +QRV +ARA + +I+L+DEA SALD S+Q+ L + A
Sbjct: 129 ---------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 1270 GKTTIVVAHRL-STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
KT + + H L IR I ++ G++ ++G+ +L NP Y
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL-RNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 70/214 (32%), Positives = 114/214 (53%), Gaps = 24/214 (11%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE +V +YP V L++ SL + G+ + L G SG+GK+T++ L+ P+ GQ
Sbjct: 1 MIEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58
Query: 487 VLLDGHDIKSLKLR---WLRQQIGLVSQEPALFAT-TIKENILL-----GRPDADLNE-I 536
V + G D+ L+ R LR++IG+V Q+ L T+ EN+ L G+ + ++ +
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
A R + L D QLSGG++QR+AIARA++ +P +LL DE T
Sbjct: 119 GAALR-------QVGLEHKADA----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 597 LDSESEKLVQEALDRFMIGRTTLVIA-HRLSTIR 629
LD + + + + L R TT+++A H LS +
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502
+ +N+ SL V G+ + L+G +G+GK+T+ +LI FY P+SG V+ G DI L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-R 75
Query: 503 RQQIGLVS--QEPALFAT-TIKENILLG-----------RPDADLNEIEEAARVANAYSF 548
++G+ Q LF T+ EN+ +G E EA A
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLVQE 607
+ L + D LS GQ++R+ IARA+ P +LLLDE + L E+E+L +
Sbjct: 136 FVGLGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 608 ALD-RFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
+ R G T L+I H + + AD + VL G V GT +E
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 31/247 (12%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD---- 481
G I +K +D Y + + L +L + + AL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 482 -PTSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDAD 532
G+VLLDG DI + + LR+++G+V Q+P F +I +N+ G +
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
L+EI E + A L D ++++ + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 119 LDEIVEKSLKGAA------LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 593 ATSALDSES----EKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGT 647
TSALD S E+L+QE + T +++ H + R +D A G + E G
Sbjct: 173 PTSALDPISTLKIEELIQELKKDY----TIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228
Query: 648 HDELIAK 654
+L
Sbjct: 229 TVDLFTN 235
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 7e-30
Identities = 68/191 (35%), Positives = 102/191 (53%), Gaps = 13/191 (6%)
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS 496
YP PEV L + G+ +AL+G++G+GKST++ + P SG VL+DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 497 LK--LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKL 552
+ L RQ++GLV Q+P LFA + +++ G + L+E E RV A + +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA- 117
Query: 553 PDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDR 611
G RER LSGG+K+R+AIA A+ P +LLLDE T+ LD + + L R
Sbjct: 118 -SGL----RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 612 FMIGRTTLVIA 622
T+VI+
Sbjct: 173 LRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 77/234 (32%), Positives = 115/234 (49%), Gaps = 42/234 (17%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK--------- 495
+L SL AG I+++GSSGSGKST + I P++G + ++G +I+
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 496 ----SLKLRWLRQQIGLVSQEPALFA-TTIKENIL------LGRPDADLNEIEEA--ARV 542
+L+ LR ++G+V Q L++ T+ EN++ LG A+ E E A+V
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
G + LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 141 ------------GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE-- 186
Query: 603 KLVQEAL----DRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
LV E L D GRT +V+ H + R + V L QG + E G +++
Sbjct: 187 -LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 9e-30
Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 34/245 (13%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++++ YP+ ++++L G+ +A++GPSG GKS+++ + R EPSSG +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1143 MIDGKDIRKYN---LKSLRRHMAIVPQEPCLFA-STIYENIAYGHESA-----------T 1187
+++G DI K L+ LRR + ++ Q L T+ EN+ +G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
E + A L+ ++ G +R QLSGGQ+QRVAIARA ++ +++L DE
Sbjct: 120 EEDKERA--LSALERV------GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 1248 ATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN--AHVIA-----VIDDGKVA 1298
++LD ++ + V + L R G T I+ H++ + ++ ++ DG +
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 1299 ELGSH 1303
EL
Sbjct: 232 ELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 43/226 (19%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++ + SY P + D+S + G+ LA+VGP+G GKS+++ + +P+SG +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQE---PCLFASTIYENIA---YGH------ESATESEI 1191
+ GK + K R+ + VPQ F ++ + + YGH S +
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1192 IEAA-----RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLD 1246
++ A AD+ I +LSGGQ+QRV +ARA V+ +++LLD
Sbjct: 113 VDEALERVGLSELADRQIG---------------ELSGGQQQRVLLARALVQDPDLLLLD 157
Query: 1247 EATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRNA--HVI 1289
E + +D +++ + E L G T +VV H L + V+
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 427 LIELKHVDFSYPSRP--------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
L+E++ + +P + +R ++ SLT+ G+T+ LVG SGSGKST+ + R
Sbjct: 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335
Query: 479 FYDPTSGQVLLDGHDIKSLK---LRWLRQQIGLVSQEP--AL-----FATTIKENILLGR 528
P+ G++ DG DI L +R LR+++ +V Q+P +L I+E + +
Sbjct: 336 L-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRER-GVQLSGGQKQRIAIARAMLKNPAI 587
P L+ E RV A + G D R R + SGGQ+QRIAIARA++ P +
Sbjct: 395 PK--LSAAERDQRVIEALEEV-----GLDPATRNRYPHEFSGGQRQRIAIARALILKPEL 447
Query: 588 LLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644
+LLDE TSALD + V + L G + L I+H L+ +R V V++ G + E
Sbjct: 448 ILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
Query: 645 IGTHDELIA 653
G + + A
Sbjct: 508 QGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 23/245 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD----- 481
+IE+++ Y E + + N ++ + + A++G SG GK+T++ I R D
Sbjct: 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGF 59
Query: 482 PTSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADL 533
G++ G DI L + R+++G+V Q+P F +I +N+ G + L
Sbjct: 60 RVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKL 119
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+ I E + A L D +++ + G +LSGGQ+QR+ IARA+ P ++LLDE
Sbjct: 120 DRIVEESLKKAA------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
TSALD + + +++ L+ T +++ H + IR AD +A + +G + E G E++
Sbjct: 174 TSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
Query: 653 AKGEN 657
+ +N
Sbjct: 234 ERPKN 238
|
Length = 250 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 38/235 (16%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+EL++V + + L++ +L + G+ + L+G SG GK+T + +I +PTSG++
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPDADLNE-IEEAA 540
+ G D+ L + + I +V Q AL+ T+ +NI L P +++E + E A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD-- 598
+ + + P QLSGGQ+QR+A+ RA+++ P + L+DE S LD
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 599 ------SESEKLVQEALDRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIG 646
+E ++L Q +G TT+ + H ++ + AD +AV+ G + +IG
Sbjct: 165 LRVQMRAELKRLQQR------LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 30/231 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ L V FSY P L AG+ +A++GPSG GKS+++ L+ F P+SG +
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE-----SATESEIIE--A 1194
+I+G D R ++++ QE LFA T+ +NI G +A + E +E A
Sbjct: 57 LINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A++ A F+ LP +LSGGQ+QRVA+AR VR+ I+LLDE SALD
Sbjct: 115 AQVGLAG-FLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 1255 ESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
+ + + C T ++V H A + +D+G++A GS
Sbjct: 163 ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 2e-29
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 17/228 (7%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PTS- 484
I+ + V+F Y + L S+ + +A +G SG GKST + L R D P +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 485 --GQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAA 540
G++ +DG +I K +++ LR+ +G+V Q P F +I EN+ G +N +++ A
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG---LRVNGVKDNA 117
Query: 541 RVANAYSFIIK---LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
+ +K L D +++E LSGGQ+QR+ IARAM +P++LL+DE SAL
Sbjct: 118 FIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177
Query: 598 DSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSE 644
D S V+E + T +++ H + R +D A G + E
Sbjct: 178 DPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 32/231 (13%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ L + FSY +P +F LT G+ A+VG SGSGKST+++LI F P SG+V
Sbjct: 1 VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGR-PDADLNE-----IEEAA 540
L++G D+ + + + ++ QE LFA T+++N+ LG P L IE A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD-- 598
+LP +LSGG++QR+A+AR ++++ +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 599 --SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
+E LV + T L++ H+ ++ A V L G ++ G
Sbjct: 163 LRAEMLDLVLDL--HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 71/211 (33%), Positives = 112/211 (53%), Gaps = 29/211 (13%)
Query: 449 FSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508
F L V G+ +A++G SG+GKST+++LI F +P SG + ++ L ++ + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSM 74
Query: 509 VSQEPALFA-TTIKENILLG-RPDADLN-----EIEEAARVANAYSFIIKLPDGFDTQVR 561
+ QE LFA T+++NI LG P LN ++ +AA+ ++ +LP+
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------- 127
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-----GR 616
QLSGGQ+QR+A+AR +++ ILLLDE SALD L +E L R
Sbjct: 128 ----QLSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLREEMLALVKQLCSERQR 180
Query: 617 TTLVIAHRLS-TIRKADVVAVLQQGSVSEIG 646
T L++ H LS A +AV+ QG + +
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503
L + SL+V G+ + L+G SG GK+T++ +I T+G + G DI L + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 504 QQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRE 562
+ G+V Q ALF T+ +NI G + + E A RVA + G R+
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERK 130
Query: 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS-ESEKLVQE--ALDRFMIGRTTL 619
QLSGGQ+QR+A+ARA+ +P +LLLDE SALD+ E L E L R +G TT+
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTI 189
Query: 620 VIAH----RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ H LS AD + V+ G + ++GT E+
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 77/255 (30%), Positives = 126/255 (49%), Gaps = 37/255 (14%)
Query: 427 LIELKHVDFSYP--SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+I ++H+ F YP + L + S +V G+ +A+VG +GSGKST+ L+ P +
Sbjct: 5 IIRVEHISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIK-------ENILLGRPDADLNE 535
G + + G + + +R+Q+G+V Q P T++ ENI + R + +
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEM-VER 120
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+++A R F+ + P +LSGGQKQR+AIA + P I++LDEATS
Sbjct: 121 VDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 596 ALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
LD E + V++ ++ I T L I H L +AD V V+ +G + E GT +E+
Sbjct: 170 MLDPRGRREVLETVRQLKEQKGI--TVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227
Query: 652 IAKGENGVYAKLIRM 666
G L +
Sbjct: 228 FKSGH-----MLQEI 237
|
Length = 279 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-29
Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 43/250 (17%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+E++++ SY +RP + D+SL G+ AL+GP+G GKS+++ + +PSSG
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCL---FASTIYENIA---------YGHESATES 1189
+ I GK +RK + R + VPQ+ + F T+ + + + + +
Sbjct: 61 IKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 1190 EIIEAA-RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
E ++ A + +GE LSGGQKQRV +ARA + +++LLDE
Sbjct: 118 EKVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 1249 TSALDAESERSVQEALDR-ACSGKTTIVVAHRLSTIR---------NAHVIAVIDDGKVA 1298
+ +D ++ + + L GKT ++V H L + N H+IA G
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA---SGPPE 223
Query: 1299 ELGSHSHLLK 1308
E+ + +L K
Sbjct: 224 EVLTEENLEK 233
|
Length = 254 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-29
Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 15/225 (6%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG----HDIKSL 497
E + +++ + GK A+VG +GSGKST++ I PT+G V +D H K
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 498 KLRWLRQQIGLVSQ--EPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDG 555
+R +R++IG+V Q E LF T++ I+ G + +N ++E A+ ++ L G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN-LDEVK--NYAHRLLMDL--G 133
Query: 556 FDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI 614
F V + Q+SGGQ ++IAI + NP I++LDE T+ LD +S++ V L
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 615 --GRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAKGE 656
+T ++++H ++ + R AD V V+++GS+ + EL +
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-29
Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 23/207 (11%)
Query: 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIV 1164
L G+ +A++GPSG GKS+++ L+ F EP+SG + ++ + L +R ++++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSML 75
Query: 1165 PQEPCLFAS-TIYENIAYGHE-----SATESE-IIEAARLANADKFISSLPDGYKTFVGE 1217
QE LFA T+ +NI G +A + E +++AA+ ++ LP+
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-------- 127
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK--TTIV 1275
QLSGGQ+QRVA+AR VR I+LLDE SALD + + + CS + T ++
Sbjct: 128 ---QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184
Query: 1276 VAHRLS-TIRNAHVIAVIDDGKVAELG 1301
V H LS A IAV+ GK+ +
Sbjct: 185 VTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 60/231 (25%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++++++ +Y + +++ SL V G+ L+G +G+GK+T + ++ PTSG
Sbjct: 1 LQIRNLTKTYKKGTKP-AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILL-----GRPDADLNEIEEAAR 541
++G+ I++ + RQ +G Q ALF T++E++ G P E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPK------SEIKE 112
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
++ L D + + R LSGG K+++++A A++ P++LLLDE TS LD S
Sbjct: 113 EVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 602 EKLVQEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDEL 651
+ + + + GR+ ++ H + D +A++ G + IG+ EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 19/231 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++++++ +Y P DLSL G+ L+G +G GK++ + ++ P+SG
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAY-----GHESATESEIIEAAR 1196
I+G IR + K+ R+ + PQ LF T+ E++ + G + E +E
Sbjct: 60 YINGYSIR-TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELL- 117
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
L D LSGG K+++++A A + ++LLDE TS LD S
Sbjct: 118 ---LRVL--GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 1257 ERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306
R++ + + G++ I+ H + IA++ DGK+ +GS L
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 9e-29
Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 20/224 (8%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRK--Y 1152
++++++ + A++GPSGCGK++++ + R + P G++ G+DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 1153 NLKSLRRHMAIVPQEPCLFASTIYENIAYG---HESATES---EIIEAARLANADKFISS 1206
++ R+ + +V Q+P F +IY+N+A+G H ++ I+E + L A +
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEES-LKKA-----A 131
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR 1266
L D K+ + + G +LSGGQ+QR+ IARA + E++LLDE TSALD + + +++ L+
Sbjct: 132 LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191
Query: 1267 ACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
T ++V H + IR A IA + G++ E G +++
Sbjct: 192 LSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++++ Y +++ L SL V G+ +AL+G +G+GK+T++ I P SG+
Sbjct: 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 487 VLLDGHDIKSLKL-RWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVAN 544
++ DG DI L R I V + +F T++EN+LLG A ++ + +
Sbjct: 60 IIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLG-AYARRDKEAQERDLEE 118
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
Y +L + + +R LSGG++Q +AIARA++ P +LLLDE + L + K+
Sbjct: 119 VYELFPRLKE----RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKI 171
Query: 605 VQEALD-----RFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
V+E + R G T L++ + AD VL+ G + GT EL+A
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-28
Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 470 STVVSLIERFYDPTSGQVLLDGHDIKSLK-LRWLRQQIGLVSQEPALFAT-TIKENILLG 527
ST++ LI PTSG +LLDG D L + LR++IG+V Q+P LF T++EN+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 528 -RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586
R EEA F+ RE LSGGQKQR+AIARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLD----------REPVGTLSGGQKQRVAIARALLKKPK 110
Query: 587 ILLLDEATS 595
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 70/214 (32%), Positives = 119/214 (55%), Gaps = 20/214 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---K 498
+ R+L SL++ G+ +A+VGSSGSGKST++ L+ +PTSG+VL +G + L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 499 LRWLR-QQIGLVSQEPALFAT-TIKENI----LLGRPDADLNEIEEAARVANAYSFIIKL 552
LR +++G + Q L T EN+ L+G+ ++EA AY + K+
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-----VKEAKER--AYEMLEKV 129
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
G + ++ R +LSGG++QR+AIARA++ P+++L DE T LD+ + K++ + +
Sbjct: 130 --GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 613 MIGRTT--LVIAHRLSTIRKADVVAVLQQGSVSE 644
T LV+ H L +K D V ++ G +
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 461 LVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TT 519
L+G SG GK+T++ L+ F P SG ++LDG D+ ++ + I +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 520 IKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG----VQLSGGQKQRI 575
++EN+ G + E RV A + Q+ E QLSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLV---------QLEEFADRKPHQLSGGQQQRV 109
Query: 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLS-TIRKAD 632
A+ARA++ P ILLLDE SALD + +Q L +G T + + H + +D
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 633 VVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
+A++++G +++IGT +E+ + N A+ I
Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVARFI 201
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-28
Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 23/197 (11%)
Query: 1116 LVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-T 1174
L+GPSGCGK++++ L+ F +P SG +M+DG+D+ N+ RH+ +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLRHINMVFQSYALFPHMT 58
Query: 1175 IYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228
+ EN+A+G + + ++EA RL ++F P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLS-TIRN 1285
RVA+ARA V K +I+LLDE SALD + +Q L G T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1286 AHVIAVIDDGKVAELGS 1302
+ IA++ GK+A++G+
Sbjct: 168 SDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L+++ Y + +SL G L+GP+G GK++++ ++ PSSG +
Sbjct: 1 LQLENLTKRYGKKR---ALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
IDG+D+ K K LRR + +PQE ++ + T+ E + Y ++ + E
Sbjct: 57 RIDGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L N L D K +G LSGG ++RV IA+A V I+++DE T+ LD E
Sbjct: 116 ELVN-------LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 1256 SERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
+ L + I+ H + + + + +AV++ GK+ G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-28
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 39/240 (16%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKS----SVIALVQRF-YEPSSGRVMIDGKDIRK 1151
+ +S + G+ L +VG SG GKS +++ L+ + G ++ DGKD+
Sbjct: 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 1152 YNLKSLR----RHMAIVPQEPCLFA--------STIYENIAYGHESATESEIIEAA---- 1195
+ K LR + +A++ Q+P + + I E + + ++ E E A
Sbjct: 77 LSEKELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 1196 ---RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+ + ++ + S P +LSGG +QRV IA A ++++ DE T+AL
Sbjct: 136 ELVGIPDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1253 DAESERSVQEALD--RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
D + + + L + G I++ H L + A +AV+ G++ E G + KN
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E+ + SY S+ + RD+S A G+ L+G +G GK++++ ++ P SG+V
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANAD 1201
IDG D + +RR + ++ E L+A T EN+ Y S AR+A
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
K + L + VGE S G KQ+VAIARA V I++LDE TS LD + R
Sbjct: 119 KRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 1262 EALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308
+ + + G+ I +H + + + V+ G+V GS L
Sbjct: 174 DFI-KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-28
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 41/248 (16%)
Query: 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS----SVIALVQRFYEPSSGRVM 1143
V+F+ +P RD+S G+ L +VG SG GKS +++ L+ +SG V+
Sbjct: 13 VEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 1144 IDGKDIRKYNLKSLR----RHMAIVPQEPCLFAS-----TIYENIA---YGHESATES-- 1189
+DG+D+ + + +R + +A++ Q+P S TI + I H + +
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHGKGSRAEA 129
Query: 1190 -----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIML 1244
E++E L + ++ P QLSGG +QRV IA A K ++++
Sbjct: 130 RKRAVELLEQVGLPDPER-RDRYPH-----------QLSGGMRQRVMIAMALALKPKLLI 177
Query: 1245 LDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
DE T+ALD ++ + + L G + + H L + A + V+ G++ E G
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG 237
Query: 1302 SHSHLLKN 1309
+L N
Sbjct: 238 PTEEILSN 245
|
Length = 539 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 43/248 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
+E+++++ Y + + L + S+ +P + A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G++ LDG +I K + + LR+++G+V Q P F +I EN++ G L+
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
E E + A L D ++ E LSGGQ+QR+ IARA+ P +LLLDE T
Sbjct: 143 EAVERSLRGAA------LWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 595 SALDSES----EKLVQEALDRFMIGRTTLVI-------AHRLSTIRKADVVAVLQQGSVS 643
SALD S E+L+ E ++ T+VI A R+S D A + G +
Sbjct: 197 SALDPISTLKIEELITELKSKY-----TIVIVTHNMQQAARVS-----DYTAFMYMGKLV 246
Query: 644 EIGTHDEL 651
E G D L
Sbjct: 247 EYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 5e-28
Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 6/258 (2%)
Query: 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCG 1123
IEP P + G + + V Y R +P + R +S R + + +VG +G G
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 1124 KSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH 1183
KS+++ R E G + ++G++I Y L+ LRR +++PQ+P LF T+ +N+
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408
Query: 1184 ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE-I 1242
E A+ +E+ A L + ++S +G + V E G S GQ+Q + +ARA ++K
Sbjct: 1409 E-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467
Query: 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
+L+DEAT+ +D +R +Q + A S T I +AHRL T+ I V+D G VAE+GS
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527
Query: 1303 HSHLLKNNPDGCYARMIQ 1320
L+ N + M++
Sbjct: 1528 PRELVM-NRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 7e-28
Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+E++ + +P V ++ SL+V G+ AL+G +G+GKST++ ++ Y P SG+
Sbjct: 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 487 VLLDGHDIKSLKLRW------LRQQIGLVSQEPALFAT-TIKENILLGRPDA-----DLN 534
+ +DG ++R +R IG+V Q L T T+ ENI+LG + D
Sbjct: 61 IRVDGK-----EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR 115
Query: 535 EI-EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+ ++ Y + D +V + LS G++QR+ I +A+ + +L+LDE
Sbjct: 116 QARARIKELSERYGLPVDP----DAKVAD----LSVGEQQRVEILKALYRGARLLILDEP 167
Query: 594 TSAL-DSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
T+ L E+++L E L R G+T + I H+L + AD V VL++G V +GT D
Sbjct: 168 TAVLTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV--VGTVDP 224
|
Length = 501 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 9e-28
Identities = 126/578 (21%), Positives = 253/578 (43%), Gaps = 89/578 (15%)
Query: 388 ISAFAKAKVAAAKIFRIIDHKP----SIDRNSESGLELDSVSGLIELKHVDFSYPSRPEV 443
IS+ +A V+ ++ + H+ SI+R + E +S I + + F++ +R
Sbjct: 597 ISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS----ITVHNATFTW-ARDLP 651
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503
LN + ++P G +A+VG G GKS+++S + D G V + G
Sbjct: 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699
Query: 504 QQIGLVSQEPALFATTIKENILLGRPDADLNE------IEEAARVANAYSFIIKLPDGFD 557
+ V Q+ + +++ENIL G+ LNE +E A + + + LP G
Sbjct: 700 -SVAYVPQQAWIQNDSLRENILFGKA---LNEKYYQQVLEACALLPD----LEILPSGDR 751
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL---DRFMI 614
T++ E+GV LSGGQKQR+++ARA+ N I L D+ SA+D+ K + E + + +
Sbjct: 752 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 615 GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM-----QEA 669
+T +++ H +S + + DV+ V+ G +SE+G++ EL+ + +G +A+ +R Q+
Sbjct: 812 NKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR--DGAFAEFLRTYAPDEQQG 869
Query: 670 AHE---TALNNARKSSARPSSARNSVSSPI-------IARNSSYGRSPYSRRLSDFSTSD 719
E TAL + A+ V+ + ++ +SS SR +
Sbjct: 870 HLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGD-QSRHHGSSAELQ 928
Query: 720 FSLSLDATYPSYRHEKLAFKE-QASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAY 778
+ + + T+ +K + + S +W K ++G + + + F +
Sbjct: 929 KAEAKEETWKLMEADKAQTGQVELSVYWDYMK------------AIG--LFITFLSIFLF 974
Query: 779 V---LSAIMSVYY------NP--DHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIV 827
V +SA+ S Y+ +P + + Y +G+ +F I
Sbjct: 975 VCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVF--GYSMAVSIG 1032
Query: 828 GENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNT 887
G ++ + + +L L++ +++F++ S + R + + + V S I VI
Sbjct: 1033 GIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIP---PVIKMFM 1087
Query: 888 ALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMF 925
+ A V+ + + + P+ + +Q+ +
Sbjct: 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFY 1125
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 25/253 (9%)
Query: 417 SGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI 476
+ + I++++++F Y + L N +L + + A +G SG GKST++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 477 ERFYD--P---TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG-- 527
R Y+ P G++LLDG +I + LR ++G+V Q+P F +I +NI G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 528 ----RPDADLNE-IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582
A+++E +E A A L + ++ + G LSGGQ+QR+ IAR +
Sbjct: 120 LFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172
Query: 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGS 641
P +LLLDE SALD S ++E + T +++ H + R +D A + G
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGE 232
Query: 642 VSEIGTHDELIAK 654
+ E G D + K
Sbjct: 233 LIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-27
Identities = 118/453 (26%), Positives = 212/453 (46%), Gaps = 60/453 (13%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I +K+ FS+ S+ E L+N +L VP G +A+VGS+G GK++++S + P S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS--- 671
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
D + +R + V Q +F T+++NIL G P D E A V
Sbjct: 672 --DASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQH 721
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV-Q 606
+ LP G T++ ERGV +SGGQKQR+++ARA+ N + + D+ SALD+ + V
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI-- 664
+ + + G+T +++ ++L + + D + ++ +G + E GT++EL G ++ KL+
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGP--LFQKLMEN 839
Query: 665 --RMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSL 722
+M+E E ++S++P + N + + ++SS + + S+
Sbjct: 840 AGKMEEYVEENGEEEDDQTSSKPVANGN---ANNLKKDSSSKKKSKEGK---------SV 887
Query: 723 SLDATYPSYRHEKLAFKEQASSFWR-LAKMNSP---EWVYALVGSVGSVICGSLNAFFAY 778
+ K +E W+ L + + WV ++ +C L F
Sbjct: 888 LI----------KQEERETGVVSWKVLERYKNALGGAWVVMIL-----FLCYVLTEVFRV 932
Query: 779 VLSAIMSVYYNPDHAYMIREIAKYCYLLI--GLSSAELLFNTLQHSFWDIVGE-NLTKRV 835
S +S + + + Y LI LS ++L TL +S+W I+ KR+
Sbjct: 933 SSSTWLSEWTDQG---TPKTHGPLFYNLIYALLSFGQVLV-TLLNSYWLIMSSLYAAKRL 988
Query: 836 REKMLAAVLKNEIAWFDQEENESARIAARLALD 868
+ ML ++L+ +++F N RI R A D
Sbjct: 989 HDAMLGSILRAPMSFF--HTNPLGRIINRFAKD 1019
|
Length = 1622 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147
++ D+SL ++G+ +AL+GPSG GKS+++ ++ P +GR+ ++G+
Sbjct: 5 INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64
Query: 1148 DIRKY-NLKSLRRHMAIVPQEPCLFA-STIYENIAYGH----ESATESEI----IEAARL 1197
+ NL R + V Q LF T+ +NIA+G E +E+EI E RL
Sbjct: 65 VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA--- 1254
+ P QLSGGQ+QRVA+ARA + +++LLDE ALDA
Sbjct: 125 VQLEGLADRYP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 173
Query: 1255 -ESERSVQEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
E R +++ DR G TT+ V H + A + V++ G++ ++G
Sbjct: 174 KELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-27
Identities = 91/288 (31%), Positives = 132/288 (45%), Gaps = 68/288 (23%)
Query: 1067 PDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFR----------DLSLRARAGKTLAL 1116
P DA + +E++ + +P + R +SL R G+TL L
Sbjct: 268 PLPEDAPVL-------LEVEDLRVWFPIKG--GFLRRTVDHLRAVDGISLTLRRGQTLGL 318
Query: 1117 VGPSGCGKSS----VIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLRRHMAIVPQEPC 1169
VG SG GKS+ ++ L+ PS G + DG+DI + ++ LRR M +V Q+P
Sbjct: 319 VGESGSGKSTLGLALLRLI-----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP- 372
Query: 1170 LFAS-----TIYENIAYG------HESATESE--IIEAARLANADKFISSLPDGYKTFVG 1216
+ S T+ + I G SA E + +IEA D P +
Sbjct: 373 -YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLD------PATRNRYPH 425
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE---ALDRACSGK-- 1271
E SGGQ+QR+AIARA + K E++LLDE TSALD RSVQ L R K
Sbjct: 426 E----FSGGQRQRIAIARALILKPELILLDEPTSALD----RSVQAQVLDLLRDLQQKHG 477
Query: 1272 -TTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ + ++H L+ +R H + V+ DGK+ E G + NP Y R
Sbjct: 478 LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF-ANPQHEYTR 524
|
Length = 534 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E K+V + + ++ L G+ + ++GPSG GKS+++ + + E +SG +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1143 MIDGKDIR--KYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLAN 1199
++DG + K + + +R+ +V Q+ LF T EN+ +G + EA + A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1200 ADKFISSLPDGYKTFVGERG----VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L K + ER +LSGGQ+QRVAIARA K ++ML DE TSALD E
Sbjct: 119 E------LLA--KVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170
Query: 1256 SERSVQEAL-DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311
V + + D A G T ++V H + A + ID G++AE G L+KN P
Sbjct: 171 LRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228
|
Length = 240 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 81/253 (32%), Positives = 130/253 (51%), Gaps = 22/253 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
LIE + D Y LNN + P IA++G +G+GKST+ PTSG
Sbjct: 3 LIETR--DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS 60
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVAN 544
VL+ G I +R +R+ +GLV Q P +F+ T++++I G + L+E A RV++
Sbjct: 61 VLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSS 120
Query: 545 AYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
A + G + ++R+R LSGG+K+R+AIA + P +L+LDE T+ LD + K
Sbjct: 121 ALHML-----GLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 604 LVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQ------QGSVSEIGTHDELIAK 654
+ + L+ G T + H+L + + AD + V+ G+V EI +L+A+
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
Query: 655 G--ENGVYAKLIR 665
+ KLIR
Sbjct: 235 VHLDLPSLPKLIR 247
|
Length = 277 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 26/228 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L+++ Y + R L+ SLT+ G L+G +G+GK+T++ ++ P+SG +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKE-----NILLGRPDADLN-EIEEAA 540
+DG D+ + LR++IG + QE ++ T++E L G P ++ ++E
Sbjct: 57 RIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 541 RVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+ N ++ + LSGG ++R+ IA+A++ +P+IL++DE T+ LD
Sbjct: 116 ELVNLG------------DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP 163
Query: 600 ESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
E + L R ++ H + + + VAVL +G + G
Sbjct: 164 EERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
+ H+ SY +P D+SL +G+ + ++GPSGCGK++++ L+ F PS G + +
Sbjct: 6 VSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64
Query: 1145 DGKDIRKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANADKF 1203
+G+ I R +V Q L + +N+A+G + I +A R A +
Sbjct: 65 NGRRIEG---PGAER--GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQM 116
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
++ + G + + QLSGG +QRV IARA + +++LLDE ALDA + +QE
Sbjct: 117 LALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 1264 LDRAC--SGKTTIVVAH 1278
L +GK +++ H
Sbjct: 175 LLDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 50/248 (20%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE+ ++ S+ ++LN+ SL +P+G+ +AL+G SGSGK+T++ +I TSG +
Sbjct: 3 IEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLG--------RPDAD------ 532
G D+ L R +++G V Q ALF T+ +NI G RP+A
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 533 --LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
L E+ + A +A+ Y QLSGGQKQR+A+ARA+ P ILLL
Sbjct: 118 TQLLEMVQLAHLADRYP-----------------AQLSGGQKQRVALARALAVEPQILLL 160
Query: 591 DEATSALDSESEKLVQEALDRFM------IGRTTLVIAH-RLSTIRKADVVAVLQQGSVS 643
DE ALD++ V++ L R++ + T++ + H + + AD V V+ QG++
Sbjct: 161 DEPFGALDAQ----VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216
Query: 644 EIGTHDEL 651
+ GT D++
Sbjct: 217 QAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 23/244 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
+E K+++ Y E + LN+ +L + K AL+G SG GKST + + R D
Sbjct: 5 MESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G+VLLDG +I K + + LR+++G+V Q+P F +I +N+ G + +L+
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+I E A A L D +++ ++LSGGQ+QR+ IAR + P ++L+DE T
Sbjct: 122 KIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIA 653
SALD S +++ + T +++ H + R +D A G + E +++
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235
Query: 654 KGEN 657
+ +
Sbjct: 236 EPQK 239
|
Length = 251 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 72/239 (30%), Positives = 128/239 (53%), Gaps = 13/239 (5%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++++ F Y +V LN S ++ G+ ++++G +GSGKST LI+ ++ G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVAN 544
V +DG + + + LR++IG+V Q P T+++++ G + + E RV
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SE 600
A + L D + RE +LSGGQKQR+A+A + P I++LDE+TS LD E
Sbjct: 124 ALLAVNML----DFKTREPA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
Query: 601 SEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659
+++ E +++ + T L I H L +D + V++ G + + EL A E+ V
Sbjct: 179 IMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMV 235
|
Length = 277 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 83/241 (34%), Positives = 130/241 (53%), Gaps = 40/241 (16%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ LK++ + S +++N +LT+ G + L+G SG GK+TV+ L+ PT GQ+
Sbjct: 7 VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 488 LLDGHDI--KSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPDADLNEIEEA 539
+DG D+ +S++ R I +V Q ALF ++ EN+ +LG P E
Sbjct: 64 FIDGEDVTHRSIQQR----DICMVFQSYALFPHMSLGENVGYGLKMLGVPKE-----ERK 114
Query: 540 ARVANAYSFIIKLPD--GFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
RV A ++L D GF+ +R V Q+SGGQ+QR+A+ARA++ P +LL DE S
Sbjct: 115 QRVKEA----LELVDLAGFE----DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 597 LD-----SESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDE 650
LD S EK ++E +F I T+L + H S +D V V+ +G + +IG+ E
Sbjct: 167 LDANLRRSMREK-IRELQQQFNI--TSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223
Query: 651 L 651
L
Sbjct: 224 L 224
|
Length = 351 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE + DF+ + + G+SG+GKST++ I P G +
Sbjct: 6 IEKRLPDFTL----------KIDFDLNEE-VTGIFGASGAGKSTLLRCIAGLEKPDGGTI 54
Query: 488 LLDGHDI----KSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARV 542
+L+G + K + L +++IGLV Q+ ALF ++EN+ G E +
Sbjct: 55 VLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD- 113
Query: 543 ANAYSFIIKLPDGFD-TQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
+L D + R QLSGG+KQR+A+ARA+ P +LLLDE SALD
Sbjct: 114 --------ELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 601 S----EKLVQEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIG 646
+++ I + + H LS AD + V++ G + IG
Sbjct: 166 LRLQLLPELKQIKKNLNI--PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-27
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 59/241 (24%)
Query: 1083 VELKHVDFSYPSR------PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE 1136
+E+K++ +P + +S + G+TL LVG SGCGKS++ L+ E
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1137 PSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAAR 1196
P+SG ++ +GKDI K + + R + E++E
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVL---------------------------ELLEKVG 97
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
L ++F+ P +LSGGQ+QR+ IARA ++++ DE SALD
Sbjct: 98 LP--EEFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1257 E-------RSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308
+ + +QE L G T + ++H LS +R + IAV+ GK+ E+G +
Sbjct: 145 QAQILNLLKDLQEEL-----GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
Query: 1309 N 1309
N
Sbjct: 200 N 200
|
Length = 268 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 64/213 (30%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PSS 1139
+++ + V+F Y D + +S+ +A +GPSGCGKS+ + L R + P++
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1140 ---GRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-------HESAT 1187
G + IDG++I + + LR+++ +V Q P F +I+EN+AYG +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
+ E + A +L D K + E LSGGQ+QR+ IARA ++L+DE
Sbjct: 120 RQRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
SALD S V+E + T ++V H +
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-27
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 38/234 (16%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTV---VSLIERFYDPTSGQVLLDGHDIKS--- 496
V+ L+ S T+ GKT+A+VG SG GKST+ +++IE PT G++ G D+
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADP 84
Query: 497 LKLRWLRQQIGLVSQEPALFAT-----TIKENILLGRP---DADLNEIEEAARVANAYSF 548
+ LRQ+I +V Q P + + + + +L P + L+ E + +
Sbjct: 85 EAQKLLRQKIQIVFQNP--YGSLNPRKKVGQ--ILEEPLLINTSLSAAERREKALAMMAK 140
Query: 549 IIKLPDGFDTQVRERGVQL-SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ- 606
+ G + +R + SGGQ+QRIAIARA++ +P +++ DE SALD VQ
Sbjct: 141 V-----GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQA 191
Query: 607 EALDRFM-----IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654
+ L+ M +G + + I+H LS + AD V V+ G E GT +++
Sbjct: 192 QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 29/221 (13%)
Query: 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIV 1164
L G+ +A++GPSG GKS+++ L+ F P+SG + ++G+D RR ++++
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT--TTPPSRRPVSML 76
Query: 1165 PQEPCLFAS-TIYENIAYG-H-----ESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
QE LF+ T+ +NI G + +A ++ AR + ++ LP
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-------- 128
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK--TTIV 1275
QLSGGQ+QRVA+AR VR+ I+LLDE SALD + + + + C + T ++
Sbjct: 129 ---QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185
Query: 1276 VAHRLSTIRNAHVIA----VIDDGKVAELGSHSHLLKNNPD 1312
V+H L +A IA V+ DG++A G LL
Sbjct: 186 VSHSLE---DAARIAPRSLVVADGRIAWDGPTDELLSGKAS 223
|
Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 19/189 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YNLK 1155
+ ++ K AL+GPSG GKS+ + + R + +G+++ G DI + N+
Sbjct: 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97
Query: 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHESATES------EIIEAARLANADKFISSLPD 1209
+R+H+ +V Q P FA +IYENI + E A EI+E + A L D
Sbjct: 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA------LWD 151
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
K + + + LSGGQ+QR+ IARA K +I+L+DE SALD S ++E +
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211
Query: 1270 GKTTIVVAH 1278
T I+V H
Sbjct: 212 NYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 7e-27
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 43/211 (20%)
Query: 438 PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI--ERFYDPTSGQVLLDGHDIK 495
PS+ ++L N S G+ A++G SG+GKST+++ + R SG+VL++G
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR--- 73
Query: 496 SLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPD 554
L R R+ IG V Q+ L T T++E ++ F KL
Sbjct: 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLM----------------------FAAKL-- 109
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM- 613
RG LSGG+++R++IA ++ NP++L LDE TS LDS S V L R
Sbjct: 110 --------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159
Query: 614 IGRTTLVIAHRLST--IRKADVVAVLQQGSV 642
GRT + H+ S+ D + +L QG V
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 8e-27
Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 18/225 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL+ + S+ + +SL R G+ AL+G +G GKS+++ ++ Y P SG +
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1143 MIDGKDIRKYNLK-SLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARL-AN 1199
+IDGK + + + +L +A V QE L + ++ ENI G E +I+ +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1200 ADKFISSL--PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD-AES 1256
A + ++ L T VG+ LS Q+Q V IARA A +++LDE T+AL E+
Sbjct: 126 ARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 1257 ER--SVQEALDRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVA 1298
ER + L +A G I ++HRL + A I V+ DG+V
Sbjct: 182 ERLFDLIRRL-KA-QGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-27
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 1125 SSVIALVQRFYEPSSGRVMIDGKDIRKYN-LKSLRRHMAIVPQEPCLFAS-TIYENIAYG 1182
S+++ L+ +P+SG +++DG+D + K LR+ + +V Q+P LF T+ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1183 -HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241
+ ++ EA F+ P G LSGGQKQRVAIARA ++K +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1242 IMLLDEATS 1250
++LLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V L + FSY +P L G+ A+VGPSG GKS+++ L+ F P SGRV
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG-----HESATESEIIE-AA 1195
+I+G D+ R ++++ QE LFA T+ +N+ G +A + + IE A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
LP +LSGG++QRVA+AR VR ++LLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 1256 SERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
+ + + + T ++V H+ + A + +D+G++A G
Sbjct: 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 28/250 (11%)
Query: 1071 DATPVPDRLRGEVE-----LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS 1125
A P+ D L E +++++ Y + + D+S+R + A +GPSGCGKS
Sbjct: 9 MALPLLDVLNLSDEQTALEVRNLNLFYGDKQAL---FDISMRIPKNRVTAFIGPSGCGKS 65
Query: 1126 SVIALVQRFYE-----PSSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYEN 1178
+++ R + G + +DG++I +K ++ LRR + +V Q P F +IYEN
Sbjct: 66 TLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYEN 125
Query: 1179 IAYG------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232
+ YG + E +E + L A +L D K + E LSGGQ+QR+ I
Sbjct: 126 VVYGLRLQGINNRRVLDEAVERS-LRGA-----ALWDEVKDRLHENAFGLSGGQQQRLVI 179
Query: 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL-STIRNAHVIAV 1291
ARA + E++LLDE TSALD S ++E + S T ++V H + R + A
Sbjct: 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAF 239
Query: 1292 IDDGKVAELG 1301
+ GK+ E G
Sbjct: 240 MYMGKLVEYG 249
|
Length = 272 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 79/244 (32%), Positives = 134/244 (54%), Gaps = 23/244 (9%)
Query: 428 IELKHVDFSY-PSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I + V+ Y P E R L + ++++P+G +A++G +GSGKST++ + PTSG
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 486 QVLLDGHDI----KSLKLRWLRQQIGLVSQ--EPALFATTIKENILLGRPDADLNEIEEA 539
V + I K+ KL+ LR+++G+V Q E LF T++++I G + ++E E+A
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE-EDA 121
Query: 540 ARVANAYSFIIKLPDGFDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
+ A +I+L G ++ R +LSGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 122 KQKARE---MIELV-GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 599 SESEKLVQEALDRFMI-----GRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
+ K E ++ F G TT+++ H + R AD + V+ +G+V GT E+
Sbjct: 178 PKGRK---EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 653 AKGE 656
A +
Sbjct: 235 ADPD 238
|
Length = 290 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 20/254 (7%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E + + +SYP E L + G+ +AL+G +G+GKST+ PTSG+
Sbjct: 1 ILETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE 58
Query: 487 VLLDGHDIKSLK--LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARV 542
VL+ G IK K L +R+ +G+V Q P LFA T++E++ G + L++ E RV
Sbjct: 59 VLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD---- 598
A + +GF+ + LSGGQK+R+AIA + P I++LDE TS LD
Sbjct: 119 KEALKAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGEN 657
S+ KL+ + G T ++ H + + AD V V+ G + + GT E+ + E
Sbjct: 174 SQIMKLLYDLNKE---GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIET 230
Query: 658 GVYAKLIRMQEAAH 671
A L R+ AH
Sbjct: 231 IRKANL-RLPRVAH 243
|
Length = 275 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 13/216 (6%)
Query: 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---KLRWL-RQQ 505
SL + G+ ++G SGSGKST+V L+ R +PT GQVL+DG DI + +LR + R++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
I +V Q AL T+ +N G A +N E + +A + G +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV-----GLENYAHSYP 162
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIG--RTTLVIA 622
+LSGG +QR+ +ARA+ NP ILL+DEA SALD +Q+ L + RT + I+
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 623 HRL-STIRKADVVAVLQQGSVSEIGTHDELIAKGEN 657
H L +R D +A++Q G V ++GT DE++ N
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPAN 258
|
Length = 400 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 23/225 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE++ + F Y + L SL++P G AL+G +G+GKST++ + Y P G+V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLG------RPDADLNEIEEA 539
+ G ++ + +W+R ++GLV Q+P +F++T+ +++ G D +EEA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+ + F K P LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 600 ESEKLVQEALDRFMIGRTTLVIA-HRLS-TIRKADVVAVLQQGSV 642
++ + E LDR T+++A H + AD V VL++G V
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 74/211 (35%), Positives = 112/211 (53%), Gaps = 19/211 (9%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+D+SL + G+ + L+GPSGCGK++++ ++ ++G + G+DI L +R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 1160 HMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGER 1218
IV Q LF + T+ +NIAYG ++ A R+A + LP + + G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-LPGSERKYPG-- 133
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA---ESERSVQEALDRACSGKTTIV 1275
QLSGGQ+QRVA+ARA ++LLDE SALDA E R+ L R G TTI+
Sbjct: 134 --QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIM 190
Query: 1276 VAH----RLSTIRNAHVIAVIDDGKVAELGS 1302
V H LS A I V++ G + ++G+
Sbjct: 191 VTHDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 72/233 (30%), Positives = 133/233 (57%), Gaps = 14/233 (6%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
+++ L+E++++ S+ + V ++ SLT+ G+ AL+G+SG GKST++ ++ F P
Sbjct: 15 ALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP 71
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAAR 541
T+GQ++LDG D+ + ++ I ++ Q ALF T+++NI G L + E A+R
Sbjct: 72 TAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASR 129
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE- 600
V + + + QLSGGQ+QR+A+AR++ K P +LLLDE ALD +
Sbjct: 130 VNEMLGLV-----HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKL 184
Query: 601 SEKLVQEALDRF-MIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+++ E +D +G T +++ H + + A +A++ +G +IG +E+
Sbjct: 185 RDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 3e-26
Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
D I ++SL RAG+ +A+ GPSGCGKS+++ +V P+SG ++ +G+D+ ++
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1157 LRRHMAIVPQEPCLFASTIYENIAY---GHESATESEIIEAARLANADKFISSLPDGYKT 1213
R+ ++ Q P LF T+ +N+ + + LA LPD +
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA-LDLLARFA-----LPD---S 125
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
+ + +LSGG+KQR+A+ R +I+LLDE TSALD ++R+++E + R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 1274 IV--VAH-RLSTIRNAHVIAVIDDGKVAEL 1300
V + H + IR+A + + G E+
Sbjct: 186 AVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 62/205 (30%), Positives = 109/205 (53%), Gaps = 11/205 (5%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
+L++V + I ++S RAG+ + GPSGCGKS+++ +V P+SG ++
Sbjct: 9 QLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKF 1203
+G+DI + R+ ++ Q P LF T+Y+N+ + + + A L + ++F
Sbjct: 66 FEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-IRNQQPDPAIFLDDLERF 124
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
+LPD T + + +LSGG+KQR+++ R +++LLDE TSALD ++ +V E
Sbjct: 125 --ALPD---TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI 179
Query: 1264 LDRACSGKTTIV--VAHRLSTIRNA 1286
+ R + V V H I +A
Sbjct: 180 IHRYVREQNIAVLWVTHDKDEINHA 204
|
Length = 225 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 20/235 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE K+V + ++L+N L + G+ + ++G SGSGKST++ I + + TSG
Sbjct: 1 MIEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD 57
Query: 487 VLLDGHDIK--SLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVA 543
+++DG + + R +RQ+ G+V Q+ LF T EN++ G EEA + A
Sbjct: 58 LIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA 117
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
+ K+ G + +LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 118 RE--LLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE--- 170
Query: 604 LVQEALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652
L E L + M G T +++ H + K A + + +G ++E G LI
Sbjct: 171 LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 37/242 (15%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E+++++ Y I +SL G+ +AL+G +G GK++++ + P SG +
Sbjct: 2 EVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1144 IDGKDIRKYNLKS---LRRHMAIVPQEPCLFAS-TIYENI---AYGHESATESEIIEAA- 1195
DG+DI L R + VP+ +F T+ EN+ AY A +E
Sbjct: 59 FDGRDIT--GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVY 116
Query: 1196 ----RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
RL K + LSGG++Q +AIARA + + +++LLDE +
Sbjct: 117 ELFPRL--------------KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162
Query: 1252 LDAESERSVQEALDRACSGKTTIVV----AHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307
L + + EA+ TI++ A I A V++ G+V G+ + LL
Sbjct: 163 LAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELL 220
Query: 1308 KN 1309
+
Sbjct: 221 AD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-26
Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 31/230 (13%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
IE + ++ Y + + L++ S+ +P + A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP----DADLNE- 535
G++ G ++ + LR++IG+V Q+P F +I +N+ G D D++E
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+EE+ R A L D Q+ G+ LSGGQ+QR+ IARA+ +P ++L+DE S
Sbjct: 157 VEESLRRA-------ALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209
Query: 596 ALD----SESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQG 640
ALD S+ E L++E + + T +++ H + R +D AV G
Sbjct: 210 ALDPVATSKIEDLIEELAEEY----TVVIVTHNMQQAARISDKTAVFLTG 255
|
Length = 285 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 12/225 (5%)
Query: 1092 YPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI-- 1149
+ I ++SL AG+ ++G SG GKS++I V P+SG V++DG+D+
Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71
Query: 1150 -RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSL 1207
L RR + ++ Q L +S T++ N+A E + E R + L
Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-EIKRKVTELLALVGL 130
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
D + ++ LSGGQKQRVAIARA +++L DEATSALD + +S+ E L
Sbjct: 131 GDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 1268 CS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKN 1309
G T +++ H + + R +AVI +G++ E G+ S + +
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 5e-26
Identities = 68/213 (31%), Positives = 116/213 (54%), Gaps = 7/213 (3%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS---GRVMIDGKDIRKYNLKSLRR 1159
D++++ K AL+G SGCGKS+ + R + + G V I+GKD++ ++ +LR+
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 1160 HMAIVPQEPCLFASTIYENIAYGHE--SATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
++ +V Q+P +F +IYENI+Y + +++ E A + + + + L + K + +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVG-LFEEVKDKLKQ 138
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVA 1277
+ LSGGQ+QR+ IARA K +++LLDE TSALD S ++E L + I+V
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
Query: 1278 HRLST-IRNAHVIAVIDDGKVAELGSHSHLLKN 1309
H + R A A G++ E G +N
Sbjct: 199 HNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155
D D+SL +G+ +AL+GPSG GK++++ L+ P SG ++ G+D ++
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 1156 SLRRHMAIVPQEPCLFAS-TIYENIAYG----HESATESEIIEAARLANADKFI--SSLP 1208
R++ V Q LF T+++N+A+G S E A++ K + L
Sbjct: 73 --ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA----ESERSVQEAL 1264
D Y QLSGGQ+QRVA+ARA + +++LLDE ALDA E R ++
Sbjct: 131 DRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183
Query: 1265 DRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
D TT+ V H + A + V++ G++ ++G+
Sbjct: 184 DEL--HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-26
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 27/223 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++ + +Y + R+L++ SL V G+ +G +G+GK+T + +I P SG++
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNEIEEAAR 541
DG + ++IG + + P + T +EN+ LLG ++E+ +
Sbjct: 58 TFDGKSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD--- 112
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
++ L D +V+ S G KQR+ IA A+L NP +L+LDE T+ LD +
Sbjct: 113 -------VVGLKDSAKKKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 602 EKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
K ++E + G T L+ +H LS I+K AD + ++ +G +
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 25/235 (10%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE----- 1136
++E + + F Y D D+SL + AL+GPSGCGKS+ + + R +
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 1137 PSSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-------HESAT 1187
G +++DG++I ++ LRR + +V Q+P F +I+EN+AYG ++
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
+ + R A +L D K + E + LSGGQ+QR+ IARA + E++L+DE
Sbjct: 123 AERVERSLRHA-------ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRL-STIRNAHVIAVIDDGKVAELG 1301
SALD + + ++E + + T I+V H + R + V A GK+ E+G
Sbjct: 176 PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 68/239 (28%), Positives = 120/239 (50%), Gaps = 17/239 (7%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE----- 1136
++E K+++ Y + + D++L K AL+GPSGCGKS+ + + R +
Sbjct: 4 KMESKNLNLWYGEKQAL---NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 1137 PSSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG---HESATESEI 1191
G V++DGK+I + ++ LR+ + +V Q+P F +IY+N+AYG H + E+
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL 120
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
+ A ++L D K + + ++LSGGQ+QR+ IAR K +++L+DE TSA
Sbjct: 121 DKIVEWALKK---AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177
Query: 1252 LDAESERSVQEALDRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKN 1309
LD S +++ + T ++V H + R + A G + E +
Sbjct: 178 LDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-26
Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 17/223 (7%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E+K++ F Y + D+S + G+ L+++G +G GKS+ + L+ E SG++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESA--TESEIIEAARLA 1198
+IDG + + N+ +R + +V Q P +T+ +++A+G E+ E+ E R+
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--RVN 122
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE- 1257
A + + G + F +LSGGQKQRVAIA A + +I++LDEATS LD E
Sbjct: 123 EALELV-----GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177
Query: 1258 ---RSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
++++ D T I + H L + + + V+ +G+V
Sbjct: 178 ELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 25/188 (13%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V LK++ + S I +L+L + G + L+GPSGCGK++V+ LV +P+ G++
Sbjct: 7 VVLKNITKRFGSNTVI---DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE----SATE--SEIIEAA 1195
IDG+D+ +++ +R + +V Q LF ++ EN+ YG + E + EA
Sbjct: 64 FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121
Query: 1196 RLANADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
L + F +R V Q+SGGQ+QRVA+ARA + K +++L DE S LDA
Sbjct: 122 ELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
Query: 1255 ESERSVQE 1262
RS++E
Sbjct: 170 NLRRSMRE 177
|
Length = 351 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 69/219 (31%), Positives = 100/219 (45%), Gaps = 28/219 (12%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
I DLSL GK AL+GP+GCGKS+++ R P SG V + K I + + L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHE---------SATESEIIEAARLANADKFISSLP 1208
R +A++PQ T+ E +AYG SA ++ + A I+ L
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAM---EQTRINHLA 132
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD----AESERSVQEAL 1264
D R LSGGQ+QR +A + ++LLDE T+ LD E R ++E
Sbjct: 133 D-------RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE-- 183
Query: 1265 DRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
GKT + V H L+ R + V+ +G V G+
Sbjct: 184 -LNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 27/233 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E + + +SYP + ++ +A G+ +AL+GP+G GKS++ +P+SG V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1143 MIDGKDIRKYNLKSL---RRHMAIVPQEP--CLFASTIYENIAYG------HESATESEI 1191
+I G+ I KY+ KSL R+ + IV Q P LFA T+ E++A+G + E +
Sbjct: 60 LIKGEPI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
EA + + F + P LSGGQK+RVAIA K EI++LDE TS
Sbjct: 119 KEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 1252 LDAESERSVQEAL-DRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGS 1302
LD + + L D G T I+ H + + A + V+ DGK+ + G+
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 1063 TEIEPDDPDATPVPDRLRGE--VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPS 1120
T D D + P GE +E + ++ Y D D+S+ + A++GPS
Sbjct: 18 TTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPS 74
Query: 1121 GCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRKYNLK--SLRRHMAIVPQEPCLFAS 1173
GCGKS+ + + R + G + GK++ ++ +LRR + +V Q+P F
Sbjct: 75 GCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK 134
Query: 1174 TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233
+IY+N+AYG + I+ R+ + + ++L D K + G+ LSGGQ+QR+ IA
Sbjct: 135 SIYDNVAYGLKIQGYDGDIDE-RVEESLRR-AALWDEVKDQLDSSGLDLSGGQQQRLCIA 192
Query: 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
RA E++L+DE SALD + +++ ++ T ++V H +
Sbjct: 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNM 239
|
Length = 285 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 1e-25
Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 7/212 (3%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS---GQVLLDGHDIKSLKLRWL 502
L + ++ + K AL+G+SG GKST + R D + G V ++G D+K+ + L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 503 RQQIGLVSQEPALFATTIKENILLGRPDADL--NEIEEAARVANAYSFIIKLPDGFDTQV 560
R+ +G+V Q+P +F +I ENI + N+ EE A V + + L + ++
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQ-KVGLFEEVKDKL 136
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620
++ + LSGGQ+QR+ IARA+ P +LLLDE TSALD S +++E L + ++
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 621 IAHRLST-IRKADVVAVLQQGSVSEIGTHDEL 651
+ H + R AD A G + E G E
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 37/210 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT---- 483
I++K ++ Y S V + +L + A +G SG GKSTV+ + R ++
Sbjct: 5 IDVKDLNIYYGSFHAVE---DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 484 -SGQVLLDGHDIKSLKLR--WLRQQIGLVSQEPALFAT-TIKENILLG------RPDADL 533
G+VLLDG D+ + +R+ IG+V Q P F T +I++N++ G R DL
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 534 NEI-EEAARVANAYSFIIKLPDGFDTQVRER----GVQLSGGQKQRIAIARAMLKNPAIL 588
+E+ E++ R AN + +V++R G LSGGQ+QR+ IARA+ P +L
Sbjct: 122 DELVEKSLRGANLW-----------NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVL 170
Query: 589 LLDEATSALDSES----EKLVQEALDRFMI 614
L+DE SALD S E L+ E + I
Sbjct: 171 LMDEPCSALDPISTLAIEDLINELKQDYTI 200
|
Length = 258 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 427 LIELKHVDFSYPS------RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480
L+E++ V +Y + + +L N SL++ G+T+ L+G SG GKST+ L+
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 481 DPTSGQVLLDGHDIKSLK---LRWLRQQIGLVSQE-PALFATTIKENILLGRPDADLNEI 536
P G V G D+ L R R+ + LV Q+ P+ + ++G P L +
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
+E+ + A + ++ + + QLSGGQ QRI IARA+ P +++LDEA S
Sbjct: 122 DESEQKARI-AELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 597 LDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644
LD + ++ E L + G L I H L ++ VAV+ +G + E
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 72/242 (29%), Positives = 103/242 (42%), Gaps = 44/242 (18%)
Query: 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP----TSGQVLLDGHDIKSLKLRWLR 503
+ +L++ G+ +ALVG SGSGKS I P TSG++LLDG + L +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61
Query: 504 QQIGLVSQEP-----ALF--ATTIKENIL-LGRPDADLNEI----------EEAARVANA 545
+ I + Q P LF E + LG+ + + V
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
Y F QLSGG QR+ IA A+L P L+ DE T+ LD ++ V
Sbjct: 122 YPF-----------------QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARV 164
Query: 606 QEALDRFMIGRTT--LVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662
+ L T L+I H L + R AD VAV+ G + E GT E+ ++ K
Sbjct: 165 LKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRK 224
Query: 663 LI 664
L+
Sbjct: 225 LL 226
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
LK++ + + I DL+L GK A++G SG GKS+++ ++ + SG+V +
Sbjct: 1 LKNISKKFGDKV---ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1145 DGKDIRKYNLKS----LRRHMAIVPQEPCLFAS-TIYENI----AYGHESATE--SEIIE 1193
+G++ N K R + + Q L + T+ EN+ Y S E + E
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
A + + K + E LSGG++QRVA+ARA ++ ++L DE T +LD
Sbjct: 118 ALEKVGLNLKL-------KQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Query: 1254 AESERSVQEAL-DRACSGKTTIVVAH 1278
++ V + L + GKT I+V H
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 72/254 (28%), Positives = 129/254 (50%), Gaps = 22/254 (8%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+++++ ++++Y L ++ + G+ A++G +G+GKST+ + P+S
Sbjct: 3 DYILKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 485 GQVLLDGH--DIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAA 540
G++L DG D L LR+ +G+V Q+P LF+ ++ +++ G + L E E
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALD- 598
RV NA L ++++ LS GQK+R+AIA ++ P +L+LDE T+ LD
Sbjct: 121 RVDNA------LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174
Query: 599 ---SESEKLVQEALDRFMIGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAK 654
SE KL+ E +G T ++ H + + D V V+++G V G E+ A+
Sbjct: 175 MGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
Query: 655 GE--NGVYAKLIRM 666
E V +L R+
Sbjct: 233 KEMLRKVNLRLPRI 246
|
Length = 283 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 61/196 (31%), Positives = 104/196 (53%), Gaps = 18/196 (9%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDI-RKYNL 1154
+ ++L A + AL+GPSGCGKS+++ + R + +G++ +DG+DI ++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLP 1208
LR + +V Q+P F +IYEN+AYG + E++E + L A +L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS-LRGA-----ALW 132
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
D K + LSGGQ+QR+ IAR + +++L+DE TSALD + ++E ++
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1269 SGKTTIVVAHRLSTIR 1284
T ++V H + R
Sbjct: 193 KNYTIVIVTHSMQQAR 208
|
Length = 249 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 73/224 (32%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 446 LNNFSL----TVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI----KSL 497
L +FSL T+P A+ G SGSGK+T++ LI P G+++L+G + K +
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 498 KLRWLRQQIGLVSQEPALFA-TTIKENILLG--RPDADLNEIEEAARVANAYSFIIKLPD 554
L +++IG V QE LF +++ N+ G R I +I+L
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER--------VIELL- 119
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM- 613
G + +LSGG+KQR+AI RA+L +P +LL+DE +ALD + + L+R
Sbjct: 120 GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 614 -IGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAKG 655
G L ++H L + R AD V VL+ G V+ G E+ A
Sbjct: 180 EFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 72/210 (34%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRKYNLK--SLRRHMAI 1163
GK AL+GPSGCGKS+V+ + R + GRV+ DG D+ + +RR + +
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 1164 VPQEPCLFASTIYENIAYGHE----SATESEIIEAARLANADKFISSLPDGYKTFVGERG 1219
V Q+P F +IYENIA+G + E++E + L A ++ D K + E G
Sbjct: 99 VFQQPNPFPKSIYENIAFGARINGYTGDMDELVERS-LRKA-----AVWDECKDKLNESG 152
Query: 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH- 1278
LSGGQ+QR+ IAR + E++L+DE SALD S ++E + T ++V H
Sbjct: 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
Query: 1279 -----RLSTIR---NAHVIAVIDDGKVAEL 1300
R+S + NA + GKV L
Sbjct: 213 MQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242
|
Length = 269 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 415 SESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS 474
+ ++ LIELK+V + IL + S V G+ A+VG +G+GK+T++S
Sbjct: 19 PKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLS 75
Query: 475 LIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQIGLVS---QEPALFATTIKENIL----- 525
L+ + P+SG V L G + + LR++IGLVS E T+++ +L
Sbjct: 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135
Query: 526 -LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLK 583
+G DL + AA A L + +R LS G+++R+ IARA++K
Sbjct: 136 SIGIYQEDLTAEDLAA--AQWL-----LELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMI---GRTTLVIAHR 624
+P +L+LDE LD + + + L+ L + H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 29/227 (12%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS-- 496
+IL + +L + + A +G SG GKST + R D G++ +DG D+ S
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLG-------RPDADLNEIEEAARVANAYSFI 549
+ LR ++G+V Q+P F +I +N+ G + L+EI E + +
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS------ 132
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES----EKLV 605
+ L + ++++ +LSGGQ+QR+ IARA+ P +LL+DE SALD + E L+
Sbjct: 133 VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
QE F I +V+ H + +K +D VA Q G + E T E+
Sbjct: 193 QELKKNFTI----IVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ +++ Y ++ RILN+ SL++P GK AL+G +G GKST++ R P SG V
Sbjct: 3 LRTENLTVGYGTK---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQE-PALFATTIKENILLGRPD-----ADLNEIEEAAR 541
L I L R L +++ L+ Q T++E + GR L+ E+ AR
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSA-EDNAR 118
Query: 542 VANAYSFIIKLPDGFDTQVRE----RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
V A T++ R LSGGQ+QR +A + ++ ++LLDE T+ L
Sbjct: 119 VNQAME---------QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
Query: 598 D----SESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
D E +L++E + G+T + + H L+ R D + VL G V GT +E++
Sbjct: 170 DINHQVELMRLMRELNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 26/222 (11%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI--RKYNLKSLRRH 1160
++++ G+ + L+G +G GKS++I + +P+SG+++IDG DI +K L +R+
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1161 MAIVPQEP--CLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYK 1212
+ +V Q P LF TI ++IA+G E E+ + A + D Y+
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YE 135
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA----ESERSVQEALDRAC 1268
+ + +LSGGQK+RVAIA + +I++LDE T+ LD E ++E
Sbjct: 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-- 193
Query: 1269 SGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKN 1309
T I+V+H + + + A I V++ GK G+ + K
Sbjct: 194 YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
Length = 287 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 25/245 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PTS- 484
+E + + F Y + + L++ SL + AL+G SG GKST + + R D P +
Sbjct: 7 MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 485 --GQVLLDGHDIKSLKLRW--LRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G++LLDG +I + LR+++G+V Q+P F +I EN+ G + A L
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 535 E-IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
E +E + R A L D ++ E + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 124 ERVERSLRHA-------ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELI 652
SALD + + ++E + T +++ H + R +DV A G + E+G +++
Sbjct: 177 ASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236
Query: 653 AKGEN 657
+
Sbjct: 237 TRPRE 241
|
Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 16/213 (7%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSLKLR 500
LN+ SL + AL+G SGSGKST++ I R D +G ++ +GH+I S +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 501 W--LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
LR++IG+V Q+P F +I EN++ G L I++ + A +K +D
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYG---LRLKGIKDKQVLDEAVEKSLKGASIWD- 136
Query: 559 QVRER----GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI 614
+V++R + LSGGQ+QR+ IAR + +P I+LLDE TSALD S ++E L
Sbjct: 137 EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196
Query: 615 GRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIG 646
T L++ + R +D G + E
Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
Length = 252 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 5e-25
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 27/252 (10%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-- 482
G I + H+ +Y + +L++ SL + AG+ +AL+G SG GK+T++ I F
Sbjct: 3 CGGIRIDHLRVAYGANT---VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLG-----RPDADLNEI 536
+G++ + D+ ++ + L+ Q ALF +++N+ G P AD+ E
Sbjct: 60 LTGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE- 116
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
RVA+A + G QLSGG +QRIAIARA+ P +LLLDE SA
Sbjct: 117 ----RVADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 597 LDSESEKLVQE---ALDRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELI 652
LD+ ++E AL + T L + H + + AD +++ G ++ G L
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 653 AKGENGVYAKLI 664
+G A+ +
Sbjct: 228 DAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 34/215 (15%)
Query: 425 SGLIELKHVDFSYPS-RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
+IE+ H+ + E+ IL L V G+T+A+VG SGSGKST+++++ DP+
Sbjct: 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63
Query: 484 SGQVLLDGHDIKSL------KLRWLRQQIGLVSQEPALFAT-TIKENILL-------GRP 529
SG+V L G + L LR + +G V Q L T EN+ L
Sbjct: 64 SGEVRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
D+ V G ++ QLSGG++QR+A+ARA P +L
Sbjct: 122 DSRAGAKALLEAV------------GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169
Query: 590 LDEATSALDSESEKLVQEALDRFMIGR---TTLVI 621
DE T LD + + + L F + R TTLV+
Sbjct: 170 ADEPTGNLDRATGDKIADLL--FALNRERGTTLVL 202
|
Length = 228 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 6e-25
Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+ +++ SY R ++N+ SL V +G+ + L+G +G+GK+T +I P SG
Sbjct: 3 STLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 486 QVLLDGHDIKSLKL-RWLRQQIGLVSQEPALF-ATTIKENIL--LGRPDADLNEIEEAAR 541
++LLD DI L + + R IG + QE ++F T+++NI+ L + DL + E
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 542 VANAYSFIIKLPDGFD-TQVRER-GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD- 598
+ L + F T +R+ LSGG+++R+ IARA+ NP +LLDE + +D
Sbjct: 120 LDA-------LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172
Query: 599 ---SESEKLVQEALDRFMIG--------RTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645
+ +++++ L IG R TL I R I V+A +GS EI
Sbjct: 173 IAVIDIQRIIKH-LKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA---EGSPEEI 226
|
Length = 243 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-25
Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 20/233 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVI-ALVQRFYEPSSGR 1141
+ +K+ FS+ S+ + P +++L G +A+VG +G GK+S+I A++ S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG--HESATESEIIEAARLAN 1199
V+I G +A VPQ +F +T+ +NI +G + I+ L +
Sbjct: 675 VVIRGT-------------VAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQH 721
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
+ LP G T +GERGV +SGGQKQRV++ARA +++ + D+ SALDA R
Sbjct: 722 D---LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 1260 V-QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNP 1311
V + + GKT ++V ++L + I ++ +G + E G++ L N P
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGP 831
|
Length = 1622 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 34/196 (17%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDI-- 494
E + L + L +P A +G SG GKST + + R D +G++ LDG DI
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 495 KSLKLRWLRQQIGLVSQEPALFATTIKENILLG-------RPDADLNEI-EEAARVANAY 546
L + LR ++G+V Q+P F +I EN+ G R A+L+EI E + R A
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKA--- 147
Query: 547 SFIIKLPDGFDTQVRER----GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD---- 598
G +V++R G LSGGQ+QR+ IARA+ +P ++L+DE SALD
Sbjct: 148 --------GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 599 SESEKLVQEALDRFMI 614
++ E+L+ E + I
Sbjct: 200 AKVEELIDELRQNYTI 215
|
Length = 267 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
+ H+ SY +P L + SLT+ +G+ + ++G SG GK+T+++LI F P+ G + L
Sbjct: 6 VSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSF 548
+G I+ G+V Q AL + +N+ G L IE+A R A+
Sbjct: 65 NGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQM 116
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
+ + G + + QLSGG +QR+ IARA+ P +LLLDE ALD+ + + +QE
Sbjct: 117 LALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 609 LDRF--MIGRTTLVIAH 623
L G+ L+I H
Sbjct: 175 LLDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 28/237 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
I L++V SY + V+ N +P GK AL+G SG GKSTV+ + R D
Sbjct: 14 ISLQNVTISYGTFEAVK---NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP----DADLNE- 535
G+VL DG D+ + +R++IG+V Q+P F +I ENI G D++E
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+E + R A + D ++ E G LSGGQ+QR+ IAR + P ++L+DE S
Sbjct: 131 VERSLRKAAVW-------DECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 596 ALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVA-----VLQQGSVSEIG 646
ALD S ++E + T +++ H + +R +D+ A ++ GS ++G
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240
|
Length = 269 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 32/239 (13%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKST---VVSLIERFYDPTS 484
I+L ++ Y + + L + +L P G+T+ L+G SG+GKS+ V++L+E P S
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRS 56
Query: 485 GQVLLDGH------DIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIE 537
G + + G+ +R LR+ +G+V Q+ L+ T+++N L+ P L +
Sbjct: 57 GTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQN-LIEAPCRVLGLSK 115
Query: 538 EAARVANAYSFIIKL-----PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
+ A A A + +L D F + LSGGQ+QR+AIARA++ P +LL DE
Sbjct: 116 DQAL-ARAEKLLERLRLKPYADRFP-------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 593 ATSALDSE-SEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
T+ALD E + ++V + G T +++ H + RK A V ++ G + E G
Sbjct: 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-25
Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 22/234 (9%)
Query: 428 IELKHVDFSYPS-RP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I L++V ++Y + P E R L + +LT+ G A +G +GSGKST++ L+ + PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 486 QVLLDGHDI----KSLKLRWLRQQIGLVSQ--EPALFATTIKENILLGRPDADLNEIEEA 539
V +D I K+ ++ +R+++GLV Q E LF T+ +++ G + +++ EEA
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQ-EEA 121
Query: 540 ARVANAYSFIIKLPDGFDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
+A ++ G + E+ +LSGGQ +R+AIA + P IL+LDE T+ LD
Sbjct: 122 EALAREKLALV----GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 599 SESEKLVQEALDRF----MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
+ K E + F G T +++ H + + AD V VL++G + G
Sbjct: 178 PKGRK---ELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 78/259 (30%), Positives = 112/259 (43%), Gaps = 30/259 (11%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPTSGQV 487
L+ D + IL +LTV G+ A++G +GSGKST+ I Y+ T G++
Sbjct: 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63
Query: 488 LLDGHDIKSLKL--RWLRQQIGLVSQEPALFA-TTIKE------NILLGRPD---ADLNE 535
L DG DI L R R I L Q P T + N G + E
Sbjct: 64 LFDGEDILELSPDER-ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
++E A + + L + F R SGG+K+R I + +L P + +LDE S
Sbjct: 123 LKEKAEL-------LGLDEEFLE--RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 596 ALDSESEKLVQEALDRFM-IGRTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHD-EL 651
LD ++ K+V E ++ GR L+I H RL K D V VL G + + G D EL
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG--DPEL 231
Query: 652 IAKGENGVYAKLIRMQEAA 670
+ E Y L +
Sbjct: 232 AEELEEKGYDWLKEVVGGE 250
|
Length = 251 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 23/225 (10%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK----- 498
+L+ L V G+ +A++G SGSGK+T++ I P +G + + I + +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 499 ---LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLP- 553
+R LRQ +G V Q LF T+ ENI+ G P E +E A A A + K+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEA-TARARELLAKVGL 134
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
G +T R LSGGQ+QR+AIARA+ P ++L DE TSALD E LV E L+
Sbjct: 135 AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIR 188
Query: 614 I----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
RT +++ H +S R AD + QG + E G L A
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 25/217 (11%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
D++L G +AL+GPSG GKS+++ ++ +P SGR+ ++G+D + +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT--RVHA 69
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHE------SATESEIIEAARLANADKFISSLPD 1209
R + V Q LF T+ +NIA+G E + ++ + E L + P+
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
QLSGGQ+QRVA+ARA + +++LLDE ALDA+ + ++ L R
Sbjct: 130 -----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL-RKLH 177
Query: 1270 GK---TTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
+ TT+ V H + A I V+ +GK+ ++GS
Sbjct: 178 DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-24
Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 29/238 (12%)
Query: 1072 ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131
ATP +R ++K DF + P + + RD+S+ GK ++G +G GKS+++ +
Sbjct: 649 ATPTSERSAKTPKMKTDDF-FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL 706
Query: 1132 QRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEI 1191
+E S GRV + R +A VPQ+ + +T+ NI + E
Sbjct: 707 LSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE------ 747
Query: 1192 IEAARLANADKF------ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
+AARLA+A + ++ L G +T +GE+GV LSGGQK RV++ARA ++ LL
Sbjct: 748 -DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806
Query: 1246 DEATSALDAE-SERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
D+ SALDA ER V+E A +GKT ++ H++ + A + + DG+V GS
Sbjct: 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864
|
Length = 1560 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-24
Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 16/207 (7%)
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS 496
+ P+V +L + S++VP GK ++G++GSGKST++ + ++ + G+V
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGF 556
W + I V Q+ + T++ NIL + D + +A RV+ + + +L G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGL 772
Query: 557 DTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE-SEKLVQEALDRFMIG 615
+T++ E+GV LSGGQK R+++ARA+ N + LLD+ SALD+ E++V+E + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 616 RTTLVIAHRLSTIRKADVVAVLQQGSV 642
+T ++ H++ + +AD V L G V
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDI--RKYNL 1154
D+ L A +GPSGCGKS+ + + R + +G++ +DG+DI + ++
Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYG-------HESATESEIIEAARLANADKFISSL 1207
LR + +V Q+P F +IYEN+AYG A EI+E + L A L
Sbjct: 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS-LRKA-----GL 149
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
+ K + E G LSGGQ+QR+ IARA E++L+DE SALD + V+E +D
Sbjct: 150 WEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209
Query: 1268 CSGKTTIVVAH 1278
T ++V H
Sbjct: 210 RQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 23/241 (9%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG-- 485
I+++ V+F Y ++L N ++ P + A++G SG GKST++ + R D SG
Sbjct: 5 IKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 486 ---QVLLDGHDIKS--LKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
VLLD +I S L + LR+++G+V Q+P F +I +N+ G + L+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
E+ E + A L D + + G+ LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 122 EVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELIA 653
SALD S ++E + T ++ H + R +D L G + E G E+ +
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
Query: 654 K 654
+
Sbjct: 236 R 236
|
Length = 251 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 13/212 (6%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI--KSLKL 499
E R LN SL + G + ++GS+G+GKST+++ I PTSGQ+L+DG D+ KS+
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 500 RWLRQQIGLVSQEPA--LFAT-TIKENILLGRPDADLNEIEEAARVANAYSF---IIKLP 553
R + V Q+P TI+EN+ L + A SF + +L
Sbjct: 78 RANL--LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLG 135
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
G + ++ +R LSGGQ+Q +++ A L P ILLLDE T+ALD ++ + V E + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 614 IGR--TTLVIAHRL-STIRKADVVAVLQQGSV 642
TTL++ H + + + + +L G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 72/249 (28%), Positives = 110/249 (44%), Gaps = 55/249 (22%)
Query: 428 IELKHVDFSYPS-------------------RPEVRILNNFSLTVPAGKTIALVGSSGSG 468
IEL++V SYP+ E L + S VP G+ I L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 469 KSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL-VSQEPALFATTIKENI--- 524
KST++ L+ Y P SG V + G ++ L +GL P L T +ENI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG------RVSSL---LGLGGGFNPEL---TGRENIYLN 108
Query: 525 --LLGRPDADLNEIEEAARVANAYSFII---KLPDGFDTQVRERGVQLSGGQKQRIAIAR 579
LLG +++E + II +L D D V+ S G K R+A A
Sbjct: 109 GRLLGLSRKEIDEKID---------EIIEFSELGDFIDLPVKT----YSSGMKARLAFAI 155
Query: 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIA-HRLSTIRK-ADVVAVL 637
A P ILL+DE + D+ ++ Q L + T+++ H S+I++ D VL
Sbjct: 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL 215
Query: 638 QQGSVSEIG 646
++G + G
Sbjct: 216 EKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 428 IELKHVDFSY-PSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I+ ++VD+ Y P P E + L+N S + G +ALVG +GSGKST++ P+SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 486 QVLLDGHDI------KSLKLRWLRQQIGLVSQ--EPALFATTIKENILLGRPDADLNEIE 537
+ + G+ I K+LK LR+++ LV Q E LF T+ +++ G + E
Sbjct: 63 TITIAGYHITPETGNKNLKK--LRKKVSLVFQFPEAQLFENTVLKDVEFG--PKNFGFSE 118
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
+ A+ A ++ K+ G + + +LSGGQ +R+AIA M P IL LDE +
Sbjct: 119 DEAKEK-ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 597 LDSESEK-LVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQG 640
LD E K ++Q D G T +++ H + + + AD V VL+ G
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK---DIRK-YNLKSLRRHMAIVPQ 1166
+ + G SG GKS+++ + +P G ++++G D RK NL +R + +V Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 1167 EPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225
+ LF + EN+A+G + E + D+ + L G + QLSGG
Sbjct: 83 QYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGG 135
Query: 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTI 1283
+KQRVA+ARA + E++LLDE SALD + L + I V H LS
Sbjct: 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195
Query: 1284 -RNAHVIAVIDDGKVAELG 1301
A I V++DG++ +G
Sbjct: 196 EYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 41/188 (21%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVI-ALV-QRFYEPSSGRVMIDGKDIRKYNLKS 1156
+ +++S +A+ G+ A++GPSG GKS+++ AL +R SG V+I+G+ + K +S
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215
R+ + VPQ+ L + T+ E + + AA+L
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLMF------------AAKL------------------ 109
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-GKTTI 1274
RG LSGG+++RV+IA V ++ LDE TS LD+ S V L R G+T I
Sbjct: 110 --RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165
Query: 1275 VVAHRLST 1282
H+ S+
Sbjct: 166 CSIHQPSS 173
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 27/237 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
++++D Y E + L + +L +PA + AL+G SG GKST++ + R D
Sbjct: 4 FNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 483 TSGQVLLDGHDI-KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLNE 535
+G++ +DG DI ++ + LR ++G+V Q+P F +I EN+ G + L+E
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120
Query: 536 I-EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+ E + R A L D +++ LSGGQ+QR+ IAR + P ++L+DE T
Sbjct: 121 VVERSLRGA-------ALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
SALD + ++E ++ T +++ H + R+ +D A G + E HD+
Sbjct: 174 SALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE---HDD 227
|
Length = 249 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 24/216 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS--- 1139
+++ ++ F Y ++ I +S+ K A++GPSGCGKS+ + + R E S
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 1140 --GRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESATES 1189
GRV ++I R+ NL LRR +++V +P LF ++Y+N+AYG
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
+I+E+A L +AD L D K + + + LSGGQ+QR+ IARA K +++L+DE
Sbjct: 125 DIVESA-LKDAD-----LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 1250 SALDAESERSVQEALD--RACSGKTTIVVAHRLSTI 1283
LD + V+ + R S T ++V+H L +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 57/240 (23%), Positives = 118/240 (49%), Gaps = 14/240 (5%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+ + ++ + V G+ +G +G+GK+T + ++ PTSG + G+D+ + R
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 502 LRQQIGLVSQEPALF-ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD-TQ 559
+R+ IG+V Q ++ T +EN+ + L + + A +L + F+ +
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEM---MGRLYGLPKDE----AEERAEELLELFELGE 116
Query: 560 VRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRT 617
+R V SGG ++R+ IA +++ P +L LDE T+ LD + + + + + G T
Sbjct: 117 AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVT 176
Query: 618 TLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK-GENGVYAKLIRMQEAAHETAL 675
L+ H + K D +A++ G + GT +EL + G++ + ++ +Q E ++
Sbjct: 177 ILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSM 236
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 61/192 (31%), Positives = 106/192 (55%), Gaps = 19/192 (9%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDI--RKYNL 1154
++++L + A++GPSGCGKS+ I + R E PS +G+++ ++I + Y++
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLP 1208
+ LR ++ +V Q+P F +IY+N+ YG + T EI+E + L A ++
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKS-LRGA-----AIW 154
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
D K + + LSGGQ+QR+ IAR + +++L+DE TSALD S V+E +
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 1269 SGKTTIVVAHRL 1280
+ I+V H +
Sbjct: 215 KDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 22/238 (9%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ ++H+ F YP +D+S G+ +A+VG +G GKS++ L+ P +G +
Sbjct: 6 IRVEHISFRYPDAAT-YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHES--ATESEIIE----A 1194
+ G + + + +RR + +V Q P +T+ +++A+G E+ E++E A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
R + F++ P +LSGGQKQRVAIA + +I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 1255 ESERSVQEALDR--ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
R V E + + G T + + H L A + V++ G++ E G+ + K+
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
|
Length = 279 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 23/260 (8%)
Query: 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123
++ + + P P+ +E+K + Y + + D+S+ AL+GPSGCG
Sbjct: 3 QMVREKIEIAPFPEAKEHILEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCG 59
Query: 1124 KSSVIALVQRFYE-----PSSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIY 1176
KS+ + + R + S G ++ +G +I N+ +LRR + +V Q+P F +IY
Sbjct: 60 KSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIY 119
Query: 1177 ENIAYGHESATE------SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230
NI + + A E EI+E + L A +L D K + + LSGGQ+QR+
Sbjct: 120 NNITHALKYAGERRKSVLDEIVEES-LTKA-----ALWDEVKDRLHSSALSLSGGQQQRL 173
Query: 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL-STIRNAHVI 1289
IAR K ++LLDE SALD S ++E + + I+V H + +R +
Sbjct: 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT 233
Query: 1290 AVIDDGKVAELGSHSHLLKN 1309
A +G + E + +
Sbjct: 234 AFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 3e-24
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 8/213 (3%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK 1151
D I ++++L AL+GPSGCGKS+ I + R + G + +DG DI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1152 YNLK--SLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209
+ LR+ + +V Q+P F +I++N+AYG E + ++L D
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
K + + + LSGGQ+QR+ IAR E++L+DE SALD S +++ + +
Sbjct: 135 EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE 194
Query: 1270 GKTTIVVAHRL-STIRNAHVIAVIDDGKVAELG 1301
T ++V H + R + + +G++ E G
Sbjct: 195 DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 4e-24
Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 26/230 (11%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLR 1158
+D SL G+ ++G SG GKS+++ L+ R EP+ G+V+IDG DI K + L+ +R
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1159 R-HMAIVPQEPCLFAS-TIYENIAYGHESA------TESEIIEAARLANADKFISSLPDG 1210
R +A+V Q L T+ +N A+G E A + ++A R + + S PD
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--AC 1268
+LSGG +QRV +ARA +I+L+DEA SALD +Q+ L + A
Sbjct: 164 ----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 1269 SGKTTIVVAHRL-STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+T + ++H L +R IA++ +G+V ++G+ +L NNP Y R
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL-NNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 60/217 (27%), Positives = 115/217 (52%), Gaps = 19/217 (8%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ ++++L+ G+ LA+ G +G GK+S++ L+ EPS G++ G+
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 1159 RHMAIVPQEPCLFASTIYENIAYG--HESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
++ Q + TI ENI +G ++ +++A +L ++ I+ P+ T +G
Sbjct: 100 --ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---EEDITKFPEKDNTVLG 154
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIV 1275
E G+ LSGGQ+ R+++ARA + A++ LLD LD +E+ + E+ + + + KT I+
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL 214
Query: 1276 VAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
V ++ ++ A I ++ +G G+ S L PD
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPD 251
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 441 PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500
+ L+N ++ +P G+ +VG G GKS+++ I G+V +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 501 WL----RQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSF---IIKLP 553
R + +Q+P L T++ENI G P N+ A V +A S I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP---FNKQRYKA-VTDACSLQPDIDLLP 127
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE-SEKLVQEALDRF 612
G T++ ERG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ L+QE + +F
Sbjct: 128 FGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187
Query: 613 MIG--RTTLVIAHRLSTIRKADVVAVLQQGS 641
+ RT +++ H+L + AD + ++ GS
Sbjct: 188 LQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 22/212 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PSS- 1139
+ K+++ Y + + D+++ + AL+GPSGCGKS+++ R + P
Sbjct: 7 LSTKNLNLWYGEKHAL---YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1140 --GRVMIDGKDIR--KYNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESATES 1189
G ++ +G++I ++ +LRR + +V Q P F +IYEN+AYG T
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
I+E + L A +L D K + + + LSGGQ+QR+ IAR E++L+DE
Sbjct: 124 TIVEKS-LKGA-----ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLS 1281
SALD + +++ ++ T I+V H +
Sbjct: 178 SALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 428 IELKHVDFSYPS-RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
I +++++ Y ++L + +L + G+ + L G SGSGK+T+++LI G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 487 VLLDGHDIKSL---KLRWLRQQIGLVSQEPALF-ATTIKENILLGRPDADLNE-IEEAAR 541
+ + G ++ +L LR+ IG + Q L T ++N+ + +L +
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA---LELQPNLSYQEA 118
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
A + + + G + LSGGQKQR+AIARA++ P ++L DE T+ALDS+S
Sbjct: 119 RERARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
Query: 602 EKLVQEALDRFMI--GRTTLVIAH 623
+ V E + + G T L++ H
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 29/233 (12%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK--- 498
E +L SL AG I+++GSSGSGKST + I P+ G ++++G I ++
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 499 ----------LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYS 547
LR LR ++ +V Q L++ T+ EN++ P L ++ AR A
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKQEAR-ERAVK 134
Query: 548 FIIKLPDGFDTQVRER-GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
++ K+ G D + + + V LSGGQ+QR++IARA+ P +LL DE TSALD E LV
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 607 EALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
E L R M G+T +V+ H + R + V L QG + E G ++L
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PT---SGQVLLDGHDI-- 494
+ IL N +L +P AL+G SG GKST + + R D P G + LDG DI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 495 KSLKLRWLRQQIGLVSQEPALFATTIKENI-----LLGRPDADLNE--IEEAARVANAYS 547
++ + LR+++G+V Q+P F +I +N+ + G D D E +EE+ + A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA---- 130
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
L D ++ + + LSGGQ+QR+ IAR + +P ++L+DE SALD S +++
Sbjct: 131 ---ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 608 ALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDEL 651
+ + T +++ H + R + + G + E G D++
Sbjct: 188 LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 8e-24
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 32/238 (13%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E +++ R +L++ SLT+ G+ +A++G +G+GKST++ + P SG+
Sbjct: 2 MLEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGR------PDADLNEIEEA 539
V L+G + L ++ ++ Q +L F T++E + +GR D + A
Sbjct: 59 VRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAML------KNPAILLLDE 592
+ + R QLSGG++QR+ +AR + P LLLDE
Sbjct: 119 LAQVDL------------AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE 166
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIA--HRLS-TIRKADVVAVLQQGSVSEIGT 647
TSALD + V + R VI H L+ R AD + +L QG + GT
Sbjct: 167 PTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 68/224 (30%), Positives = 97/224 (43%), Gaps = 46/224 (20%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPTSGQVLLDGHDIKSLKL 499
IL +LT+ G+ AL+G +GSGKST+ I Y+ T G++L G DI L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 500 --RWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD 557
R R I L Q P EI +K D F
Sbjct: 72 EER-ARLGIFLAFQYPP--------------------EIPG-----------VKNAD-F- 97
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGR 616
+R SGG+K+R I + +L P + +LDE S LD ++ +LV E +++ G+
Sbjct: 98 --LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 617 TTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTH---DELIAKG 655
+ L+I H RL K D V VL G + + G E+ KG
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKG 199
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS-----GQVLLDGHDI--KS 496
L S+ +P AL+G SG GKST + + R D G V LDG DI
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENI-----------------LLGRPDADLNE--IE 537
+ L LR+++G+V Q P F +I+ENI LLGR D D + +E
Sbjct: 119 VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
+ R A L D + ++ + + LSGGQ+QR+ IAR + +P ++L+DE SAL
Sbjct: 179 RSLRQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
Query: 598 D----SESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAV-LQQGSVSEIGTHDEL 651
D S+ E L++E + + T +V+ H + R +D AV L G + E D++
Sbjct: 232 DPIATSKIEDLIEELAEEY----TVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287
|
Length = 305 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E+ + F Y +R D+S R G+ +AL+GP+G GKS++ +L+ R Y G++
Sbjct: 3 EVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCL-FASTIYENIAY-----GHESATESEIIEA--A 1195
+ G D+R+ +L R + +V Q+P L ++ +N+ Y G A I A
Sbjct: 60 VAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLA 118
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
RL A++ ++ +L+GG ++RV IARA + + ++LLDE T LD
Sbjct: 119 RLGLAER------------ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 1256 SERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
S ++ + G + + H + I + V+ G+V G+
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGA 215
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 34/235 (14%)
Query: 1083 VELKHVDFSYPSRPDIPI-FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ K+V F Y S D +D+S G+ ++VG +G GKS++ L+ + SG
Sbjct: 8 IVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG-----------HESATE 1188
+ + + I N + LR+H+ IV Q P S + ++A+G H +E
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 1189 SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
+ + + L AD P+ LSGGQKQRVAIA +++LDEA
Sbjct: 126 A-LKQVDMLERAD----YEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEA 169
Query: 1249 TSALDAESERSVQEALDRACSGK--TTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301
TS LD ++ +++ + + + S T I + H LS A + V++ G V + G
Sbjct: 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEG 224
|
Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 23/238 (9%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ + F Y + LSL G AL+GP+G GKS+++ + Y P GRV
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG------HESATESEIIEA 1194
+ G+++ N K +R + +V Q+P +F+ST+++++A+G + E + EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ F P LS GQK+RVAIA ++++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1255 ESERSVQEALDR-ACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
+ ++ E LDR GKT IV H + A + V+ +G+V G S L +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 23/218 (10%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
+ D+SL R G+ +A++GP+G GKS+++ + P SG V ++G+ + ++ L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 1159 RHMAIVPQEPCL-FASTIYENIAYG----HESATESEIIEAARLANADKFISSLPDGYKT 1213
R A++PQ L F T+ E +A G S E + + AA LA D ++ L
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD--LAHLAGRDYP 133
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAE------IMLLDEATSALD-AESERSVQEALDR 1266
QLSGG++QRV +AR + E +LLDE TSALD A ++ A
Sbjct: 134 -------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 1267 ACSGKTT-IVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
A IVV H L+ R A I ++ G++ G+
Sbjct: 187 AHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 42/250 (16%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
LK + E L + S + G+ + ++G +G+GKST++ LI Y PTSG+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 488 LLDGHDIKSLKLRWLRQQIGL-VSQEPALFATTIKENI-----LLGRPDADLNEIEEAAR 541
+ G K+ L I L +P L T +ENI +LG +++E +
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVD--- 129
Query: 542 VANAYSFIIK---LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
II+ L D D V+ S G R+A + A P ILLLDE + D
Sbjct: 130 ------EIIEFAELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179
Query: 599 SESEKLVQEALDRFM----IGRTTLVIAHRLSTIRKA-DVVAVLQQGSVSEIGTHDELIA 653
++ L+R +T ++++H L I++ D L+ G + G+ +E+I
Sbjct: 180 ---AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
Query: 654 KGENGVYAKL 663
E + +L
Sbjct: 237 AYEEDLADRL 246
|
Length = 249 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 75/246 (30%), Positives = 130/246 (52%), Gaps = 16/246 (6%)
Query: 423 SVSGLIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480
S I L +V ++Y + E + LNN SLT K ++G++GSGKST++ L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 481 DPTSGQVLLDGH----DIKSLK-LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADL 533
+GQ ++ + ++K +K ++ LR++IGLV Q P LF TI+++I G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
N+ E +V +++LP+ + V+ +LSGGQK+R+A+A + + L+LDE
Sbjct: 122 NKQEAYKKVPELLK-LVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 594 TSALDSESEKLVQEALDRF--MIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDE 650
T LD + E+ +R + +++ H + + R AD V V+ +G V IG+ E
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 651 LIAKGE 656
+ + E
Sbjct: 238 IFSNQE 243
|
Length = 289 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 25/218 (11%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PT---SGQVLLDGHDI--KSLK 498
+ + S+ P A++G SG GKSTV+ I R +D P+ +G++LLD DI + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 499 LRWLRQQIGLVSQEPALF-ATTIKENILLGR------PDADLNEIEEAA--RVANAYSFI 549
+R+++G+V Q+P F A +I +N++ G ++ +EI E++ RVA
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA------ 133
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
L D +++ ++LSGGQ+QR+ IAR + P ++L+DE SALD S ++E +
Sbjct: 134 --LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 610 DRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIG 646
+ T +++ H + R +D A G + E G
Sbjct: 192 EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I L++V +SYP L N +L + G+ I ++G +GSGKST+ + P G+
Sbjct: 1 MIRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58
Query: 487 VLLDGHDIKSL-KLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVA 543
VL+ G D KL+ +R+ +G+V Q P T++E++ G + L IE RV
Sbjct: 59 VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
A + I G + LSGGQ Q +A+A + P L+ DE TS LD +S
Sbjct: 119 RALAEI-----GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 604 LVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
V E + + G+T + I H L + AD + V+ +G + G + +++
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 38/219 (17%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
L++V F P R +L+ SLT PAGK L+G +GSGKST++ ++ R P+ G++LL
Sbjct: 14 LRNVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 490 DGHDIKSLKLRWLRQQIGLVSQE-PALFATTIKENILLGR----------PDADLNEIEE 538
D ++S + +++ + Q+ PA T++E + +GR AD ++EE
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A + +L D LSGG++QR IA + ++ LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVL 637
+ V L + HRLS R V+AVL
Sbjct: 180 IAHQVDV-------------LALVHRLSQERGLTVIAVL 205
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF---YDP---TSGQVLLDGHDIKSLK 498
IL + ++ +P ++G SGSGKST++ ++ R YD G+VL G DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 499 LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD 557
LR+++G+V Q+P F +I +NI + E E ++ + L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRT 617
++ QLSGGQ+QR+ IARA+ P +LL+DE TS +D + + +++ +
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIA 204
Query: 618 TLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
++++H + R AD VA L G + E G+ +E+ +N + K +
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252
|
Length = 257 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 25/227 (11%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF--YEPS---SGRVMIDGKDI--RKY 1152
I D++L + A +GPSGCGKS+ + R + P+ G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1153 NLKSLRRHMAIVPQEPCLFASTIYENIAYG---HESATE----SEIIEAA--RLANADKF 1203
N+ LR + +V Q+P F +IY+N+AYG H A EI+E + + ++
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL 139
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
L D +LSGGQ+QR+ IARA K ++L+DE SALD + ++
Sbjct: 140 GDRLKDS--------AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191
Query: 1264 LDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+ T IVV H + + + +A G++ E + + KN
Sbjct: 192 IQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 62/187 (33%), Positives = 104/187 (55%), Gaps = 8/187 (4%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDI--RKYNL 1154
+D+S+ A++GPSGCGKS+V+ + R ++ PS +G++++D DI R +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1155 KSLRRHMAIVPQEPCLF-ASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKT 1213
S+RR + +V Q+P F A +IY+N+ G++ EA + + +L D K
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
+ ++LSGGQ+QR+ IAR K E++L+DE SALD S ++E ++ T
Sbjct: 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTI 200
Query: 1274 IVVAHRL 1280
I+V H +
Sbjct: 201 IIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 36/234 (15%)
Query: 436 SYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK 495
Y R +++N SL+V G+ + L+G +G+GK+T +I P SG++LLDG DI
Sbjct: 9 RYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 496 SLKL-RWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLP 553
L + + R IG + QE ++F T++ENIL L++ E ++ L
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE-------LL 118
Query: 554 DGFD-TQVRER-GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQE 607
+ F T +R+ LSGG+++R+ IARA+ NP LLLDE + +D + +K+++
Sbjct: 119 EEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
Query: 608 ALDRFMIG--------RTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
DR IG R TL I R ++ +G V GT +E+ A
Sbjct: 179 LKDR-GIGVLITDHNVRETLSITDR---------AYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 78/240 (32%), Positives = 120/240 (50%), Gaps = 47/240 (19%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK--- 498
+ +L+ + +V AG+ +AL+G SGSGKST++ ++ GQ+ ++G + +
Sbjct: 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN 71
Query: 499 ----------LRWLRQQIGLVSQEPALFA-TTIKENI------LLGRPDADLNEIEEAAR 541
LR +R +IG+V Q LF T+ +N+ +LG A E E+ A
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARA---EAEKRA- 127
Query: 542 VANAYSFIIKLPD--GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
++L D G + QLSGGQ+QR+AIARA+ P ++L DE TSALD
Sbjct: 128 --------MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
Query: 600 ESEKLVQEALDRFMIGR-------TTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
E LV E L+ +I R T L++ H + R+ AD V +G + E G DE+
Sbjct: 180 E---LVGEVLN--VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 26/227 (11%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS-------------LIERFY--DPTSGQ 486
E+ LNN S T K ++G+SGSGKST+V+ + Y D +
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 487 VLLDGHDIKSLK-LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVA 543
L+ K +K + LR+++ +V Q P LF TI+++I+ G P A + EA ++A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLA 156
Query: 544 NAYSFIIKLPDGFDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
Y + K+ G D ER LSGGQK+R+AIA + P IL+ DE T+ LD + E
Sbjct: 157 KFY--LNKM--GLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 603 K-LVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
++Q LD +T VI H + + + AD V V+ +G + + GT
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-23
Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 14/215 (6%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L S + + + +VG +GSGKST++ R + G++ ++G +I + LR LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 505 QIGLVSQEPALFATTIKENI---LLGRPD---ADLNEIEEAARVANAYSFIIKLPDGFDT 558
Q ++ Q+P LF T+++N+ L A L + RVA+ +G D+
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASE-------SEGIDS 1437
Query: 559 QVRERGVQLSGGQKQRIAIARAMLK-NPAILLLDEATSALDSESEKLVQEALDRFMIGRT 617
+V E G S GQ+Q + +ARA+LK +L+DEAT+ +D ++ +Q + T
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYT 1497
Query: 618 TLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELI 652
+ IAHRL T+ + D + V+ G+V+E+G+ EL+
Sbjct: 1498 VITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532
|
Length = 1560 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 23/238 (9%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
++ ++ K+++ Y + L + ++++P + AL+G SG GKST++ R D
Sbjct: 2 TMEIILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL 58
Query: 483 TS-----GQVLLDGHDIKSLKLR--WLRQQIGLVSQEPALFATTIKENILLG------RP 529
G +L +G +I LR++IG+V Q P F +I EN+ G +
Sbjct: 59 IPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
L+ I E + A L D ++ + + LSGGQ+QR+ IAR + NP ++L
Sbjct: 119 KKTLDTIVEKSLKGAA------LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIG 646
+DE SALD + +++ ++ T +++ H + R +D + G + E
Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 64/205 (31%), Positives = 104/205 (50%), Gaps = 10/205 (4%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----P 1137
+++K + F Y + I +S+ K A++GPSGCGKS+ I + R E
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1138 SSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAA 1195
G V G++I + N+ LRR + +V Q P F +IYEN+AYG + + +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
+ + ++L K + + + LSGGQ+QR+ IARA K +++L+DE SALD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 1256 SERSVQEALDRACSGKTTIVVAHRL 1280
+ V+E + S T +V H +
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 36/241 (14%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I+L ++ Y + + L + +L P G+T+ L+G SG+GKS+++ ++ P SG +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 488 LLDGH--DIKSLK----LRWLRQQIGLVSQEPALFA-TTIKENIL------LGRPD---- 530
+ G+ D +R LR+ +G+V Q+ L+ T++EN++ LG
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 531 ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
A ++ + R+ D + + LSGGQ+QR+AIARA++ P +LL
Sbjct: 120 ARAEKLLKRLRLKP-------YADRYP-------LHLSGGQQQRVAIARALMMEPQVLLF 165
Query: 591 DEATSALDSE-SEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH 648
DE T+ALD E + ++V + G T +++ H + RK A V ++ G + E G
Sbjct: 166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
Query: 649 D 649
Sbjct: 226 S 226
|
Length = 242 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-23
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 1083 VELKHVDFSYPS-RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+E+ H+ + ++ I + + L + G+T+A+VGPSG GKS+++A++ +PSSG
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1142 VMIDGKDIRKYN---LKSLR-RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAAR 1196
V + G+ + K + +LR RH+ V Q L + T EN+A E ES A
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADS 123
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
A A + ++ G + QLSGG++QRVA+ARAF + +++ DE T LD +
Sbjct: 124 RAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
Query: 1257 ERSVQE---ALDRACSGKTTIVVAH---------RLSTIRNAHVIA 1290
+ + AL+R G T ++V H R +R+ ++
Sbjct: 182 GDKIADLLFALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-23
Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 50/249 (20%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L ++ Y + D++L G+TL L+GPSG GKSS++ ++ P SG +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1143 MI-----------DGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENI--------AYG 1182
I K IR+ LRR++ +V Q+ L+ T+ +N+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRE-----LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS 114
Query: 1183 HESATES--EIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239
+ A +++E RL AD+F P + LSGGQ+QRVAIARA + +
Sbjct: 115 KDQALARAEKLLERLRLKPYADRF----P-----------LHLSGGQQQRVAIARALMME 159
Query: 1240 AEIMLLDEATSALDAE-SERSVQEALDRACSGKTTIVVAHRLSTIRNA--HVIAVIDDGK 1296
+++L DE T+ALD E + + V + A +G T ++V H + R V+ +++G
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV-YMENGH 218
Query: 1297 VAELGSHSH 1305
+ E G S
Sbjct: 219 IVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 4e-23
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 61/218 (27%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+EL+ + + V+ L+ SL+V G+ AL+G +G+GKST++ ++ Y P SG++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
LV + FA+ DA A +A Y
Sbjct: 58 --------------------LVDGKEVSFASPR---------DA------RRAGIAMVY- 81
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLVQ 606
QLS G++Q + IARA+ +N +L+LDE T+AL +E E+L
Sbjct: 82 ------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122
Query: 607 EALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
+ + R G + I+HRL + + AD V VL+ G V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 4e-23
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488
E+ +++ Y + IL SL VP G+ ++G +G GK+T++ + SG +
Sbjct: 2 EVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 489 LDGHDIKSLKLRWL-RQQIGLVSQEPALFAT-TIKENILLG---RPDADLNEIEEAARVA 543
LDG DI L R I V Q +F T++EN+L G P +E
Sbjct: 59 LDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEI---- 114
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
Y P + R RG LSGGQ+Q++AIARA++ P +LLLDE T + K
Sbjct: 115 --YEL---FPVLKEMLGR-RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 604 LVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+ + R G L++ L R+ AD V+++G V G DEL
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 5e-23
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS- 1156
I R +SL G+ +AL+G +G GK++++ + P SGR++ DG+DI L
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG--LPPH 73
Query: 1157 --LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKT 1213
R +A VP+ +F T+ EN+ G A + + L + Y+
Sbjct: 74 ERARLGIAYVPEGRRIFPRLTVEENLLLG-----------AYARRDKEAQERDLEEVYEL 122
Query: 1214 F------VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD-- 1265
F +R LSGG++Q +AIARA + + +++LLDE + L + + EA+
Sbjct: 123 FPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182
Query: 1266 RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
R G T ++V A V+++G++ G+ + LL +
Sbjct: 183 RKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 5e-23
Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 36/224 (16%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+NN SLTVP L+G +G+GKST++ +I PTSG+++ DGH W R+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-------PWTRK 67
Query: 505 ---QIGLVSQEPALFAT-TIKENI-----LLGRPDADLNEIEEAARVANAYSFIIKLPDG 555
+IG + + P L+ T +EN+ LLG PD+ ++E+ I+ L +
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNT 117
Query: 556 FDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIG 615
+++ Q S G KQR+ IA A+L +P +L+LDE T+ LD + ++E + F
Sbjct: 118 G----KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 616 RTTLVI-AHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGEN 657
T+++ +H LS +++ AD + ++ +G +G + I K EN
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEG---VLGYQGK-INKSEN 213
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 28/238 (11%)
Query: 427 LIELKHVDFSYPS------RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480
L+ + + Y +LNN SL++ +G+T+AL+G SG GKST+ L+
Sbjct: 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE 62
Query: 481 DPTSGQVLLDGHDIKSLK---LRWLRQQIGLVSQEPALFATTIKENI--LLGRPDADLNE 535
P+ G V G + L + R+ I +V Q+ ++ A ++ + ++ P L
Sbjct: 63 SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQD-SISAVNPRKTVREIIREPLRHLLS 121
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+++A R+A A +++ D D+ + +R QLSGGQ QR+ +ARA+ P +L+LDEA S
Sbjct: 122 LDKAERLARASE-MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180
Query: 596 ALD--------SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644
LD +KL Q+ G L I H L + + V V+ G + E
Sbjct: 181 NLDLVLQAGVIRLLKKLQQQF------GTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 38/243 (15%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L ++ Y + D++L G+TL L+GPSG GKSS++ ++ P SG +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1143 MIDGKDIRKYNLKS------LRRHMAIVPQEPCLFAS-TIYEN----------IAYGHES 1185
I G S LRR++ +V Q+ L+ T+ EN ++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 1186 ATESEIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIML 1244
A ++++ RL AD++ + LSGGQ+QRVAIARA + + +++L
Sbjct: 120 ARAEKLLKRLRLKPYADRY---------------PLHLSGGQQQRVAIARALMMEPQVLL 164
Query: 1245 LDEATSALDAESERSVQEAL-DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
DE T+ALD E + + + A +G T ++V H + R A + +++G + E G
Sbjct: 165 FDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 1303 HSH 1305
S
Sbjct: 225 ASC 227
|
Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 7e-23
Identities = 65/217 (29%), Positives = 118/217 (54%), Gaps = 19/217 (8%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P+ +++S + G+ LA+ G +G GKSS++ ++ EPS G++ G+
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 1159 RHMAIVPQEPCLFASTIYENIAYG--HESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
++ PQ + TI +NI +G ++ + +I+A +L ++ I+ P+ KT +G
Sbjct: 489 --ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQL---EEDIALFPEKDKTVLG 543
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIV 1275
E G+ LSGGQ+ R+++ARA + A++ LLD + LD +E+ + E+ L + S KT I+
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 1276 VAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
V +L ++ A I ++ +G G+ S L PD
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPD 640
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (246), Expect = 7e-23
Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-- 481
+ +I K V SY L+ SL + AL+G SG GKST + + R D
Sbjct: 1 MENIISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 482 ---PTSGQVLLDGHDIKSLK--LRWLRQQIGLVSQEPALFATTIKENI-----LLGRPDA 531
+G++ +G +I K L LR+++G+V Q+P F ++ +N+ + G D
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 532 DL--NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAIL 588
+L +EE+ + A + + D D R Q SGGQ+QRI IARA+ P ++
Sbjct: 118 ELIDQRVEESLKQAAIWK---ETKDNLD-----RNAQAFSGGQQQRICIARALAVRPKVV 169
Query: 589 LLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGT 647
LLDE TSALD S ++E L T +++ H L R +D A L G + E G
Sbjct: 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
Query: 648 HDEL 651
+E+
Sbjct: 230 TEEM 233
|
Length = 251 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 8e-23
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 30/218 (13%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-H 1160
D+S R G+ L+GP+G GK+++ L+ F P+SG V+ DG+DI L
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEIAR 74
Query: 1161 MAIVP--QEPCLFAS-TIYENIAYGHESATESEII-------EAARLANADKFISSLPDG 1210
+ I Q P LF T+ EN+ ++ T S ++ E A++ +
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL------ 128
Query: 1211 YKTFVGERGV------QLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DAESERSVQEA 1263
VG + +LS GQ++R+ IARA +++LLDE + L E+E +
Sbjct: 129 --ERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 1264 LDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKV-AE 1299
+ G T ++V H + + + A + V+D G+V AE
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-23
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 39/237 (16%)
Query: 425 SGLIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
+ L+ELK + SYPS E V +L SL + AG+ +A+VG+SGSGKST+++++ PT
Sbjct: 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT 61
Query: 484 SGQVLLDGHDIKSL------KLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEI 536
SG + G D+ +L +LR R+ G + Q L + T +N+ + A +
Sbjct: 62 SGTYRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNVEV---PAVYAGL 116
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E R+ A + +L G + +V + QLSGGQ+QR++IARA++ ++L DE T A
Sbjct: 117 ERKQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA 174
Query: 597 LDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
LDS S G + I H+L +G I THD +A
Sbjct: 175 LDSHS-------------GEEVMAILHQLR-----------DRGHTVIIVTHDPQVA 207
|
Length = 648 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (248), Expect = 8e-23
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG-----QVLLDGHDIKSLK- 498
+L+ S+ PA +L+G +GSGK+T + + R D SG VLL G I + +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
+ R+++G++ Q P F +I +N+L G L +E VA A + L D
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTT 618
++ + +LSGGQ+Q + +AR + NP +LLLDE TSALD + + ++E + T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 619 LVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
+++ H L+ R +D A+ G + E G ++L + ++ A+ +
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 9e-23
Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 12/234 (5%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT--- 483
L+ + V+ Y + V+ N +L V G AL+G SG GK+T + I R +D T
Sbjct: 4 LLSAQDVNIYYGDKQAVK---NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60
Query: 484 --SGQVLLDGHDIKSLKLR--WLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEE 538
+G++LLDG DI ++ +R+++G+V Q+P F T ++ +N++ G A + + +
Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDH 120
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
VA L D +++ LSGGQ+QR+ IARA+ P ILL+DE TSALD
Sbjct: 121 LMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDEL 651
S +++ + T +++ H + R +D + G + E G D+L
Sbjct: 181 PASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 9e-23
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 27/233 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ L V +S R I++ +T P G L+G +GSGKST++ L+ P +G V
Sbjct: 2 LRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQE-PALFATTIKENILLGR----------PDADLNEI 536
L G D+ L R +++ LV Q+ T+++ + LGR D +
Sbjct: 59 DLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVV 118
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
+ A + T LSGG++QR+ +ARA+ + P +LLLDE T+
Sbjct: 119 DRALARTELSHLADR---DMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNH 167
Query: 597 LDSESEKLVQEALDRFMIGRTTLVIA-HRLS-TIRKADVVAVLQQGSVSEIGT 647
LD ++ + T+V A H L+ D V VL G V G
Sbjct: 168 LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 9e-23
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 15/242 (6%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
++E KHV F+YP + LN+ S ++P G AL+G +GSGKST+ LI P
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
Query: 483 TS---GQVLLDGHDIKSLKLRW-LRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEI 536
++ +DG + + K W +R+++G+V Q P T+ +++ G + +
Sbjct: 60 DDNPNSKITVDGITLTA-KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRP 118
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E V + + + G + LSGGQKQR+AIA + P I++LDE+TS
Sbjct: 119 EMIKIVRDVLADV-----GMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 597 LDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
LD ++ + + + + T + I H + AD V VL G + G+ E+ +K
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 655 GE 656
E
Sbjct: 234 VE 235
|
Length = 282 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-23
Identities = 61/245 (24%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 1057 DLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLAL 1116
+ TE D + L+++ P + +L+ R G+ L +
Sbjct: 367 EAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLI 424
Query: 1117 VGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI--VPQEPCLFAST 1174
G SG GK+S++ + + SGR+ S+ A+ +PQ P L T
Sbjct: 425 TGESGAGKTSLLRALAGLWPWGSGRI-------------SMPADSALLFLPQRPYLPQGT 471
Query: 1175 IYENIAY--GHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232
+ E + Y +++E++ L + LSGG++QR+A
Sbjct: 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAF 526
Query: 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAH--VIA 1290
AR + K + + LDEATSALD E+E + + L T I V HR T+ N H +
Sbjct: 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-PTLWNFHSRQLE 585
Query: 1291 VIDDG 1295
++DD
Sbjct: 586 LLDDA 590
|
Length = 604 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 1e-22
Identities = 78/233 (33%), Positives = 118/233 (50%), Gaps = 34/233 (14%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--------- 1150
+ + +SL+A AG ++++G SG GKS+ + + +PS+G + ++G++IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1151 ----KYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESA---TESEIIEAARLANADK 1202
K L+ LR + +V Q L++ T+ EN+ +++E IE A A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
I+ D Y LSGGQ+QRVAIARA + E+ML DE TSALD E V E
Sbjct: 141 GIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGE 190
Query: 1263 AL----DRACSGKTTIVVAHRLSTIRN--AHVIAVIDDGKVAELGSHSHLLKN 1309
L D A G+T +VV H + R+ +HVI + GK+ E G + N
Sbjct: 191 VLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI-FLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 20/214 (9%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN--- 1153
D + + +SL G+ +A+VG SG GKS+++ L+ P+SG V+ +G+ + K +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1154 LKSLR-RHMAIVPQEPCLFAS-TIYENIAY----GHESATESEIIEAARLANADKFISSL 1207
LR + + + Q L T EN+A G +S E++ L +K
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEML---EKV---- 129
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
G + + R +LSGG++QRVAIARA V + ++L DE T LD + + + + +
Sbjct: 130 --GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1268 CSGKTT--IVVAHRLSTIRNAHVIAVIDDGKVAE 1299
T +VV H L + + + DG++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 1e-22
Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 26/188 (13%)
Query: 449 FSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508
F LTV G+ +A++G SG+GKST+++LI F P SG + L+G D + R+ + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 509 VSQEPALFA-TTIKENILLG-RPDADLN-----EIEEAARVANAYSFIIKLPDGFDTQVR 561
+ QE LF+ T+ +NI LG P LN ++ AR + +LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------- 128
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEALDRFMIGRT 617
QLSGGQ+QR+A+AR +++ ILLLDE SALD E LV + + T
Sbjct: 129 ----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--T 182
Query: 618 TLVIAHRL 625
L+++H L
Sbjct: 183 LLMVSHSL 190
|
Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-22
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 22/218 (10%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDI-- 494
+ + + K AL+G SGSGKST + + R D +GQ+L G DI
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 495 KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLNEI-EEAARVANAYS 547
K + + +R+ IG+V Q P FA +I ENI + L+EI E + + A
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA---- 147
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
L D + + + LSGGQ+QR+ IARA+ P ILL+DE SALD S ++E
Sbjct: 148 ---ALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204
Query: 608 ALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSE 644
+ T +++ H + R +D A G + E
Sbjct: 205 TMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 19/179 (10%)
Query: 1115 ALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDI--RKYNLKSLRRHMAIVPQE 1167
AL+GPSG GKS+++ + R + P +G ++ +G +I + + LR+ + +V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 1168 PCLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
P F +IYEN+ YG + E +E + L A S+ D K + + +
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKS-LKGA-----SIWDEVKDRLHDSALG 148
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGGQ+QRV IAR +I+LLDE TSALD S ++E L T ++V +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 1e-22
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 12/209 (5%)
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155
+ ++++R G+ +VG GCGKSS++ + + G+V K+ + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1156 SL----RRHMAIVPQEPCLFASTIYENIAYGHESATE--SEIIEAARLANADKFISSLPD 1209
+ R +A Q+P L +T+ ENI +G + + +A L I LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPD---IDLLPF 128
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE-SERSVQEALDRAC 1268
G +T +GERG+ LSGGQ+QR+ +ARA + I+ LD+ SALD S+ +QE + +
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 1269 SG--KTTIVVAHRLSTIRNAHVIAVIDDG 1295
+T ++V H+L + +A I + DG
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 1e-22
Identities = 65/190 (34%), Positives = 103/190 (54%), Gaps = 19/190 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PSS---GRVMIDGKDI--RKYNLK 1155
D+ L+ A K +A +GPSGCGKS+++ R + P + GR++ ++I + N
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 1156 SLRRHMAIVPQEPCLFASTIYENIAY-----GHESATESEIIEAARLANADKFISSLPDG 1210
LRR + +V Q P F +IYENIA+ G++ + + ++ R A ++ +
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA-------AIWEE 150
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
K + E+G LSGGQ+QR+ IARA K +++L+DE SALD S R V+E
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ 210
Query: 1271 KTTIVVAHRL 1280
T I+V H +
Sbjct: 211 YTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 1e-22
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 17/190 (8%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRKYNLK- 1155
+++ L + A +GPSGCGKS+++ R + P G+V GK++ ++
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1156 -SLRRHMAIVPQEPCLFASTIYENIAYGHE----SATESEIIEAARLANADKFISSLPDG 1210
+RR + +V Q+P F +IY+NIAYG E++E + L A +L D
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS-LRQA-----ALWDE 140
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
K + + G+ LSGGQ+QR+ IARA + E++L+DE SALD S ++E +
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ 200
Query: 1271 KTTIVVAHRL 1280
T I+V H +
Sbjct: 201 YTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-22
Identities = 79/245 (32%), Positives = 109/245 (44%), Gaps = 52/245 (21%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPT---SGQVLLDGHDIKS 496
V + S + AG+T+ALVG SGSGKS I SG +L DG D+ +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 497 LKLRWLR----QQIGLVSQEP--ALFAT-TIKENIL--------LGRPDA--------DL 533
R LR +IG++ QEP +L TI + + L R A +L
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLEL 141
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
I E + +AY +LSGGQ+QR+ IA A+ P +L+ DE
Sbjct: 142 VGIPEPEKRLDAYPH-----------------ELSGGQRQRVMIAMALANEPDLLIADEP 184
Query: 594 TSALDSESE----KLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH 648
T+ALD + L++E G L I H L +RK AD V V+Q G + E GT
Sbjct: 185 TTALDVTVQAQILDLLKELQAEL--GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242
Query: 649 DELIA 653
+ L A
Sbjct: 243 ETLFA 247
|
Length = 534 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 66/208 (31%), Positives = 119/208 (57%), Gaps = 19/208 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
D+SL G+ AL+G SGCGKS+++ ++ F +P++G++M+DG D+ ++ +R +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 1163 IVPQEPCLFAS-TIYENIAYG--HESATESEIIEAARLANADKFISSLPDGYKTFVGERG 1219
++ Q LF T+ +NIA+G + ++EI A+R+ + + F +
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI--ASRVNEMLGLVH-----MQEFAKRKP 147
Query: 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ----EALDRACSGKTTIV 1275
QLSGGQ+QRVA+AR+ ++ +++LLDE ALD + +Q + L+R G T ++
Sbjct: 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV--GVTCVM 205
Query: 1276 VAH-RLSTIRNAHVIAVIDDGKVAELGS 1302
V H + + A IA+++ GK ++G
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-22
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 33/236 (13%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP----SSGRVMIDGKDIRKYNLKSLR 1158
DL+L + G+ LALVG SG GKS + P +SG +++DG+ + +++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 1159 RHMAIVPQEPC-----LF--ASTIYENI-AYGHESATESEII----EAARLANADKFISS 1206
RH+A + Q P LF + E + + G S +I EA L + ++ +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR 1266
P QLSGG QRV IA A + + ++ DE T+ LD ++ V + L
Sbjct: 122 YP-----------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1267 ACS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319
G +++ H L + R A +AV+DDG++ E G+ + NP R +
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT-VKEIFYNPKHETTRKL 225
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 15/237 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----P 1137
+ K V SY + +SL + AL+GPSGCGKS+ + + R +
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 1138 SSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESA--TESEIIE 1193
+G + +G++I K +L LR+ + +V Q+P F ++Y+N+AYG + A + E+I+
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
R+ + K +++ K + SGGQ+QR+ IARA + +++LLDE TSALD
Sbjct: 122 Q-RVEESLK-QAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
Query: 1254 AESERSVQEALDRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKN 1309
S ++E L T I+V H L R + A + +G + E G +
Sbjct: 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-22
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 42/220 (19%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I L+++ +Y RP +L N SLT+ G+ I LVG +G+GKST++ ++ +P SG+
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLG--RPDADLNEIEEAARV- 542
V ++G +SQEP L T+ + ++ G L E+EEA +
Sbjct: 60 VTRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 543 -------ANAYSFIIKLPDGFDTQVRERGV--------------QLSGGQKQRIAIARAM 581
+++ DG+ + R LSGG ++R+A+ARA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI 621
L+ P +LLLDE T+ LD ES + +++ L R+ T+++
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PGTVIV 205
|
Length = 530 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 23/245 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD----- 481
+IE ++++ Y + + LNN ++ + AL+G SG GKST + + R D
Sbjct: 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI 63
Query: 482 PTSGQVLLDGHDIKS--LKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADL 533
G V+ +G +I S + LR++IG+V Q P F +I +NI G + L
Sbjct: 64 KIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+EI E + +A L + ++ + LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 124 DEIVEQSLKKSA------LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 594 TSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
TSALD S ++E + T +++ H + R +D A G + E + DEL
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
Query: 653 AKGEN 657
+N
Sbjct: 238 FNPKN 242
|
Length = 254 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-22
Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE++++ Y + + S V G+ L+G +G+GK+T + ++ PTSG+
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILL-----GRPDADLNEIEEAAR 541
+ GHD+ + R +R++IG+V Q+ ++ T EN+ + G P A+ E R
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----R 111
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ F + L + D V+ SGG ++R+ IAR+++ P +L LDE T LD ++
Sbjct: 112 IDELLDF-VGLLEAADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
Query: 602 E----KLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+ +++ + F G T L+ H + + D VA++ G + GT +EL
Sbjct: 167 RAHVWEYIEKLKEEF--GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 24/211 (11%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L +LT+ G+ I+L+G SG GKST+++LI PTSG V+L+G I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---------TE 51
Query: 506 IG----LVSQEPALFA-TTIKENILLG--RPDADLNEIEEAARVANAYSFIIKLPDGFDT 558
G +V Q +L T++ENI L R DL++ E A V + + G
Sbjct: 52 PGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALV-----GLTE 106
Query: 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGR 616
+R QLSGG KQR+AIARA+ P +LLLDE ALD+ + +QE L +
Sbjct: 107 AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 617 TTLVIAHRL-STIRKADVVAVLQQGSVSEIG 646
T L++ H + + +D V +L G + IG
Sbjct: 167 TVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 29/246 (11%)
Query: 427 LIELKHVDFSYPSRPEVR---ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
+I+ K+V + Y S E L++ +L V G+ + ++G +GSGKST+ + P+
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 484 SGQVLLDGHDIKSLKLRW-LRQQIGLVSQEP--ALFATTIKENILLG------RPDADLN 534
G+V +DG D + W +R + G+V Q P + AT ++E++ G P+
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
++E+ + Y + P LSGGQKQR+AIA + P ++ DE T
Sbjct: 124 RVDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 595 SALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDE 650
+ LD E ++E ++ I T ++I H + +AD + V+ G V GT E
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGI--TIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 651 LIAKGE 656
+ + E
Sbjct: 231 IFKEVE 236
|
Length = 280 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-22
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+S + G+ L+GP+G GK++ + ++ EP +G +DG D+ K RR +
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80
Query: 1162 AIVPQEPCLFAS-TIYENIAY--------GHESATESEIIEAARLANADKFISSLPDGYK 1212
V L+ T EN+ Y G E ARL ++ L G +
Sbjct: 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT--------ARL---EELADRL--GME 127
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-GK 1271
+ R S G +Q+VAIARA V ++LLDE T+ LD + R+++E + + + GK
Sbjct: 128 ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 1272 TTIVVAHRLSTI-RNAHVIAVIDDGKVAELG 1301
+ H + + R + V+ G+V G
Sbjct: 188 CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 3e-22
Identities = 58/190 (30%), Positives = 105/190 (55%), Gaps = 13/190 (6%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDI--RKYN 1153
++++L + A++GPSGCGKS+ I + + P+ +G + +G +I K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYG---HESATESEIIEAARLANADKFISSLPDG 1210
L LR+++ +V Q+ F +I++N+AYG H + + ++ E + D +L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD---VALWDE 144
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
K + + + LSGGQ+QR+ IARA +++L+DE TSALD S R ++E + +
Sbjct: 145 VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEK 204
Query: 1271 KTTIVVAHRL 1280
T ++V H +
Sbjct: 205 YTIVIVTHNM 214
|
Length = 259 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 4e-22
Identities = 64/208 (30%), Positives = 110/208 (52%), Gaps = 15/208 (7%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L N +L + G+ +A+ GS+GSGK++++ LI +P+ G++ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
+I SQ + TIKENI+ G D + + I K P+ +T + E G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-LDRFMIGRTTLVIAH 623
+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T +++
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 624 RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
++ ++KAD + +L +GS GT EL
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 41/248 (16%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ +++V SY ++ + D+SL G +++GP+G GKS++++++ R + SG +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG----HESATESE---IIEA 1194
IDG ++ K L + ++I+ QE + + T+ + + +G + E II
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1195 A----RLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
A L + +D+++ +LSGGQ+QR IA + + +LLDE
Sbjct: 119 AIEYLHLEDLSDRYLD---------------ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 1250 SALDAESERSVQEALDRACS--GKTTIVVAHRL--STIRNAHVIAVIDDGKVAELGS--- 1302
+ LD + + + L R GKT +VV H + ++ + H++A+ +GKV + GS
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL-KNGKVVKQGSPDE 222
Query: 1303 --HSHLLK 1308
+L
Sbjct: 223 IIQPEILS 230
|
Length = 252 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-22
Identities = 60/179 (33%), Positives = 98/179 (54%), Gaps = 19/179 (10%)
Query: 1115 ALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRKYNLKS--LRRHMAIVPQE 1167
A++GPSGCGKS+ + + R + PS +G +M DG+DI LR+ + +V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 1168 PCLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
P F +I++NIAYG ++ EI+E + L A +L D + + +
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS-LRKA-----ALWDEVSDRLDKNALG 182
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGGQ+QR+ +AR + EI+LLDE TSALD ++ +++ + T ++V H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
|
Length = 286 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 4e-22
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS----LIERFYDP-TSGQVLLDGHDIKS 496
+V +L+ +L +P AL+G SGSGKST++ LIE + + SG+V LDG DI
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 497 LKLRWLRQQIGLVSQEPALFAT-TIKENILLG----RPDADLNEIEEAARVANAYSFIIK 551
+ + LR+++ +V Q P +I EN+ LG R E++E R A + +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKA---Q 131
Query: 552 LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDR 611
L D ++ +LSGGQ+QR+ IARA+ P +LL DE T+ LD E+ ++
Sbjct: 132 LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 612 FMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
T +++ H R +D VA L +G + E G E+
Sbjct: 192 LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 4e-22
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 19/184 (10%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRKYNLKS--LRRHMAI 1163
+ AL+GPSGCGKS+ + + R + P +G V + G++I N LR+ + +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 1164 VPQEPCLFASTIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
V Q+P F +IYEN+ YG + A E +E + A + D K + E
Sbjct: 91 VFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------IWDEVKDHLHE 144
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVA 1277
+ LSGGQ+QRV IAR K +++LLDE TSALD S ++ L T I+V
Sbjct: 145 SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204
Query: 1278 HRLS 1281
H +
Sbjct: 205 HSMH 208
|
Length = 252 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 19/237 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I +++ +S R R+L+ SL + G+ +A++G +G+GKST++ + P SG+
Sbjct: 1 MIRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE 57
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGR-PDADLNEIEEAARVAN 544
V L+G + S L + ++ Q +L F T++E + +GR P E EE R+A
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 545 AYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLK------NPAILLLDEATSAL 597
L G R + LSGG++QR+ +AR + + + L LDE TSAL
Sbjct: 118 QALAATDL-SGLA----GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172
Query: 598 D-SESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
D + ++ A G L + H L+ + AD + +L QG V G+ +++
Sbjct: 173 DIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-22
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK------DIR 1150
D I +D++++ ++GPSG GKS+++ ++ R E ++ +DGK DI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 1151 KYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209
+ + LR+ + +V Q+P F +IY+NIAY +S E E ++ L
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
+ QLSGGQ+QR+ IARA K +++L+DE TS +D + +++++ + +
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 1270 GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLL 1307
++V+H + R A +A + +G++ E GS + +
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (241), Expect = 5e-22
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 24/233 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
I++++++ Y E + L N S+ +P AL+G SG GKST + + R D
Sbjct: 13 IKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNE----- 535
G+V ++G DI + + LR+ +G+V Q+P F +I +N+ G N+
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 536 -IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+E A R A + D +++ + LSGGQ+QR+ IAR + P I+L DE T
Sbjct: 130 VVENALRSAALW-------DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT 182
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIG 646
SALD S +++ + T +++ H + R +D G + E G
Sbjct: 183 SALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 6e-22
Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 19/203 (9%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI----RKYNLKSLR 1158
D + A AL GPSG GK+S+I ++ P GR+ ++G+ + + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
R + V Q+ LF T+ N+ YG + + A D+ ++ L G + +
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYG---------MWKSMRAQFDQLVALL--GIEHLLDR 124
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIV- 1275
LSGG+KQRVAI RA + E++L+DE ++LD +R + L+R I+
Sbjct: 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 1276 VAHRLSTI-RNAHVIAVIDDGKV 1297
V+H L + R A + V+++GKV
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKV 207
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 8e-22
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-H 1160
D+SL R G+ + L+GP+G GK+++ L+ FY+PSSG V+ G+DI L R
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRIAR 78
Query: 1161 MAIVP--QEPCLFAS-TIYENIAYGHESAT--------------ESEIIEAARLANADKF 1203
+ I Q LF T+ EN+A G + E E E AR +
Sbjct: 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAR-ELLEFV 137
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
L + LS GQ++R+ IARA + +++LLDE + L+ E + E
Sbjct: 138 --GLGE----LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 1264 LD--RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297
+ R G T +++ H + + A I V++ G+V
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 8e-22
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSLKLR 500
L L + AL+G SG GKST + + R D +G V L G +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 501 --WLRQQIGLVSQEPALFATTIKENILLG------RPDADLNEIEEAARVANAYSFIIKL 552
LR+Q+G+V Q+P F +I EN++ G + A L+E E + A +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------I 134
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
D + E + LSGGQ+QR+ IAR + P ++LLDE TSALD S ++ L
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 613 MIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSE 644
T +++ H + R +D A G++ E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 1089 DFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148
D Y +++ A +A++GP+G GKS++ +P+SG V+I G+
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 1149 IRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG------HESATESEIIEAARLANA 1200
I K N++ +R+ + +V Q P +F+ T+ ++IA+G E + A +
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
++ +P LSGG+K+RVAIA + ++++LDE T+ LD + + +
Sbjct: 128 EELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 1261 QEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
+ L+ G T I H+L + A I V+D G++ G+
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 1e-21
Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 23/241 (9%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--- 481
++E+K + Y + R +N+ S+ + AL+G SG GKST + I R D
Sbjct: 19 EHILEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP 75
Query: 482 --PTSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDA 531
+ G++L +G +I ++ + LR++IG+V Q+P F +I NI R +
Sbjct: 76 SARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKS 135
Query: 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
L+EI E + A L D ++ + LSGGQ+QR+ IAR + PA+LLLD
Sbjct: 136 VLDEIVEESLTKAA------LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189
Query: 592 EATSALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDE 650
E SALD S ++E + + +++ H + +R +D A G + E ++
Sbjct: 190 EPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249
Query: 651 L 651
+
Sbjct: 250 I 250
|
Length = 268 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 34/217 (15%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR---KYNLKS 1156
+ D++L G+ + L GPSG GK++++ L+ G + + G+++ + L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYG---HESATESEIIEAAR----LANADKFISSLP 1208
LRR++ + Q L T +N+ + + E E AR + P
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV-----QEA 1263
LSGGQKQRVAIARA V + +++L DE T+ALD++S R V + A
Sbjct: 140 H-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 1264 LDRACSGKTTIVVAH--RLSTIRNAHVIAVIDDGKVA 1298
++ C T ++V H R+ + A I ++DGK+
Sbjct: 189 REQGC---TILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 64/234 (27%), Positives = 129/234 (55%), Gaps = 18/234 (7%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I +++V SY ++ +L++ SL +P G +++G +G+GKST++S++ R SG+
Sbjct: 1 MITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGR-PDADLNEIEEAARVAN 544
+ +DG ++ S + L +++ ++ QE + + T+++ + GR P + +E R+ N
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN 117
Query: 545 AYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALD----S 599
+ L D + +R + +LSGGQ+QR IA + ++ +LLDE + LD
Sbjct: 118 EAIEYLHLED-----LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV 172
Query: 600 ESEKLVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
+ K+++ D G+T +V+ H ++ +D + L+ G V + G+ DE+I
Sbjct: 173 QIMKILRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 1e-21
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 12/207 (5%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PS 1138
E+++ +F Y +R + DL+L + K A +GPSGCGKS+ + + + +
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1139 SGRVMIDGKDIRKYNLKSL--RRHMAIVPQEPCLFASTIYENIAYG--HESATESEIIEA 1194
G + G + R + SL R + +V Q+P F +I++N+AYG + + +I+E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE- 199
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
++ ++L D K + + G LSGGQ+QR+ IARA + E++L+DE TSALD
Sbjct: 200 -KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 1255 ESERSVQEALDRACSGKTTIVVAHRLS 1281
+ ++E + + I+V H ++
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMA 285
|
Length = 329 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-21
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498
+ +L+ L+V G + LVG +G+GK+T++ I PT+G VL+ G D+++L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 499 LRWLRQQIGLVSQEPAL-FATTIKENILLGRP----------DADLNEIEEAARVANAYS 547
R +++ V Q+ +L F +++ + +GR + D +E A
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE----K 603
F D V LSGG++QR+ +ARA+ + +LLLDE T++LD + +
Sbjct: 132 FA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180
Query: 604 LVQEALDRFMIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIG 646
LV+ +D G+T + H L R D + +L G V G
Sbjct: 181 LVRRLVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 2e-21
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--------- 1150
+ + +SL+A AG ++++G SG GKS+ + + +PS G ++++G+ I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1151 ----KYNLKSLRRHMAIVPQEPCLFAS-TIYENI--------AYGHESATESEIIEAARL 1197
K L+ LR + +V Q L++ T+ EN+ + A E + A++
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
++ P V LSGGQ+QRV+IARA + E++L DE TSALD E
Sbjct: 140 GIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 1258 RSVQEALDR-ACSGKTTIVVAHRLSTIRN--AHVIAVIDDGKVAELGSHSHLLKN 1309
V + + A GKT +VV H + R+ +HVI + GK+ E G+ L N
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 21/226 (9%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDIRKYNLK- 1155
++++L + G AL+GPSGCGK++ + + R ++ + +GR+++DG+DI +
Sbjct: 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80
Query: 1156 -SLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKT 1213
++RR + +V Q+P F + ++++N+ G + A + +A ++L D K
Sbjct: 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD 140
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
+ LSGGQ+QR+ IARA + EI+L+DE TSALD S +++ + T
Sbjct: 141 RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTI 200
Query: 1274 IVVAHRLSTIRNAHVIAVIDD-------GKVAELGSHSHLLKNNPD 1312
I+V H N H A + D G + E G L N D
Sbjct: 201 IIVTH------NMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240
|
Length = 252 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 20/203 (9%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PT---SGQVLLDGHDI--KSLK 498
+ N L +P + A +G SG GKST++ R D P G+V G ++ +
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLGRP----DADLNE-IEEAARVANAYSFIIKLP 553
+R++IG+V Q+P F +I +NI G D++E +E + R A L
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA-------ALW 138
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
D ++++ G+ LSGGQ+QR+ IARA+ P ++L+DE SALD S ++E +
Sbjct: 139 DEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 614 IGRTTLVIAHRL-STIRKADVVA 635
T +++ H + R +D+ A
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----P 1137
+ L + DF + +I I ++ AL+GPSGCGKS+ + + R +
Sbjct: 13 LNLFYTDFKALNNINIKILKN--------SITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 1138 SSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG------HESATES 1189
G V+ +GK+I +++ LRR + +V Q P F +IY+NI+YG +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
EI+E + S+L + K + + LSGGQ+QR+ IAR + ++L+DE T
Sbjct: 125 EIVEQSLKK------SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLK 1308
SALD S ++E + T I+V H + R + A +G + E S L
Sbjct: 179 SALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238
Query: 1309 N 1309
N
Sbjct: 239 N 239
|
Length = 254 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 2e-21
Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--- 481
+ + E+++ +F Y +R + +L++ +L + K A +G SG GKST + + + D
Sbjct: 78 ANVFEIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE 136
Query: 482 --PTSGQVLLDGHDIKSLKLRWL--RQQIGLVSQEPALFATTIKENILLGRPDADLNEIE 537
G++ G + +S K+ L R +IG+V Q+P F +I +N+ G + +N+ +
Sbjct: 137 GTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRK 196
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
++ L D + + G LSGGQ+QR+ IARA+ P +LL+DE TSAL
Sbjct: 197 ILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSAL 256
Query: 598 DSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
D + ++E + + +++ H ++ ++ +D QG + E G
Sbjct: 257 DPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 2e-21
Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 15/193 (7%)
Query: 456 GKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WLRQQIGLVSQE 512
G+ L G SG+GKST++ LI P++G++ GHDI LK R +LR+QIG++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 513 PALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571
L T+ +N+ + A + + RV+ A + G + + +QLSGG+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV-----GLLDKAKNFPIQLSGGE 142
Query: 572 KQRIAIARAMLKNPAILLLDEATSALDSE-SEKLVQ--EALDRFMIGRTTLVIAHRLSTI 628
+QR+ IARA++ PA+LL DE T LD SE +++ E +R +G T L+ H + I
Sbjct: 143 QQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLI 200
Query: 629 -RKADVVAVLQQG 640
R++ + L G
Sbjct: 201 SRRSYRMLTLSDG 213
|
Length = 222 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 56/217 (25%), Positives = 111/217 (51%), Gaps = 17/217 (7%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E+++V + V L++ S +V G+ L+G +G+GK+T + +I P SG+V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALF-ATTIKENIL-LGRPDADLNEIEEAARVANA 545
L DG + R +IG + +E L+ + + ++ L + L EEA R +
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQL-KGLK-KEEARRRIDE 111
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ ++L + + +V E LS G +Q++ A++ +P +L+LDE S LD + +L+
Sbjct: 112 WLERLELSEYANKRVEE----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167
Query: 606 QEALDRFM-IGRTTLVIAHRLSTI-RKADVVAVLQQG 640
++ + G+T ++ H++ + D V +L +G
Sbjct: 168 KDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-- 483
G++ LK+V P +L N + T+ G+ + L+G SG GKST++S +
Sbjct: 1 GMLCLKNVSLRLPGSC---LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 484 -SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAAR 541
+G++ L+ + L ++QIG++ Q+ LF ++ +N+L P ++ AR
Sbjct: 58 CTGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNAR 111
Query: 542 VANAYSFIIKLP-DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A + + + DG Q LSGGQ+ R+A+ RA+L P LLLDE S LD
Sbjct: 112 RNAANAALERSGLDGAFHQDPA---TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-21
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDI--KSLK 498
L N +L + + A++G SG GKST + + R + T+G++L +I KS
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLNEI-EEAARVANAYSFIIK 551
+ LR +G+V Q+P F +I +N+ G + L+EI E++ R A + +
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---E 156
Query: 552 LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES----EKLVQE 607
L D LSGGQ+QR+ IAR + P ++L+DE TSALD S E+LVQE
Sbjct: 157 LKDRLHDN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 608 ALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDEL 651
+ I +++ H + R +D A G V+E D++
Sbjct: 213 LKKDYSI----IIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253
|
Length = 271 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 3e-21
Identities = 76/246 (30%), Positives = 121/246 (49%), Gaps = 27/246 (10%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--PTS-- 484
E+ ++F Y + L N ++ V + AL+G SG GKST + R +D P +
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 485 -GQVLL--DGHDIKSLKLR--WLRQQIGLVSQEPALFATTIKENILLG------RPDADL 533
G+++L D +I S ++ +R +I +V Q+P F +I EN+ G + + L
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 534 NE-IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
E +E A R A L D ++ + LSGGQ+QR+ IARA+ +P ILL DE
Sbjct: 135 EERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDEL 651
TSALD + ++E + T L++ H + R +D A + G + E G D +
Sbjct: 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
Query: 652 IAKGEN 657
K +N
Sbjct: 248 FIKPKN 253
|
Length = 265 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 4e-21
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 19/198 (9%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS-----GRVMIDGKDIRK--YNL 1154
+ +S+ AL+GPSGCGKS+ + + R + G V +DG+DI + NL
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADK------------ 1202
LR+ + +V Q P F +I ENI+YG + ARL D
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
++L D + + + LSGGQ+QR+ IAR E++L+DE SALD + +++
Sbjct: 182 RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241
Query: 1263 ALDRACSGKTTIVVAHRL 1280
++ T +VV H +
Sbjct: 242 LIEELAEEYTVVVVTHNM 259
|
Length = 305 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 4e-21
Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 25/240 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP---SS 1139
VE KHV F+YP P D+S G AL+G +G GKS++ L+ P +
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHES--ATESEIIEAA 1195
++ +DG + + +R + IV Q P +T+ +++A+G E+ E+I+
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1196 RLANAD----KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
R AD +I S P LSGGQKQRVAIA + +I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1252 LDAESERSVQEALDRACSGK--TTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
LD + + + + + T I + H + A + V+DDGK+ GS +
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-21
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 39/251 (15%)
Query: 384 AAPSISAFAKAKVAAAK--IFRIIDHKPSIDRNS------ESGLELDSVSGLIELKHVDF 435
AA S + AK+++ + R+ + +P + G L + ++E ++V
Sbjct: 272 AAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKL--VLEFENVSK 329
Query: 436 SYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK 495
Y +L + S + G IA+VG +G+GKST++ L+ P SG V + G +K
Sbjct: 330 GYDGGRL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-GETVK 386
Query: 496 SLKLRWLRQQIGLVSQE-PALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLP 553
IG Q L T+ E + G PD D E+ F
Sbjct: 387 ----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG-----RF----- 426
Query: 554 DGFDT-QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
GF + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES + ++EAL F
Sbjct: 427 -GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF 485
Query: 613 MIGRTTLVIAH 623
G T L+++H
Sbjct: 486 E-G-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 4e-21
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+ ++L + G+ ++L+G SGCGKS+++ L+ +P+SG V+++GK I + +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 1162 AIVPQEPCLFA-STIYENIAYG------HESATESEIIEAARLANADKFISSLPDGYKTF 1214
+V Q L T+ ENIA S +E I +A G
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALV---------GLTEA 107
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKT 1272
+R QLSGG KQRVAIARA + +++LLDE ALDA + ++QE L + T
Sbjct: 108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167
Query: 1273 TIVVAH 1278
++V H
Sbjct: 168 VLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 60/201 (29%), Positives = 107/201 (53%), Gaps = 18/201 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++++ H+ Y +P L + +LT+ +G+ + ++G SG GK+T+++LI F G
Sbjct: 1 MLQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANA 545
+ LDG ++ + G+V Q L +++N+ G L +E+ R+ A
Sbjct: 58 ITLDGKPVEGPG-----AERGVVFQNEGLLPWRNVQDNVAFG---LQLAGVEKMQRLEIA 109
Query: 546 YSFIIKLP-DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
+ + K+ +G + + QLSGGQ+QR+ IARA+ NP +LLLDE ALD+ + +
Sbjct: 110 HQMLKKVGLEGAE---KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166
Query: 605 VQEALDRFM--IGRTTLVIAH 623
+Q L + G+ L+I H
Sbjct: 167 MQTLLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 4e-21
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 28/234 (11%)
Query: 453 VPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDI--KSLKLRWLRQQ 505
+ + +G SG GKSTV+ + R D G V G D+ K + +R+
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 506 IGLVSQEPALFATTIKENILLG----RPDADLNE-IEEAARVANAYSFIIKLPDGFDTQV 560
IG+V Q+P F+ +I +N+ G R DL + ++ A + A L D ++
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWDEVKDKL 143
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620
+ G+ LSGGQ+QR+ IARA+ P +LLLDE SALD + + V+E + T +
Sbjct: 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203
Query: 621 IAHRL-STIRKADVVAVL--------QQGSVSEIGTHDELIAKGENGVYAKLIR 665
+ H + IR AD A + G + E+G ++ + + I
Sbjct: 204 VTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSDYIS 257
|
Length = 261 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 5e-21
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 61/219 (27%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL+ + + + +SL R G+ AL+G +G GKS+++ ++ Y+P SG +
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1143 MIDGKDIRKYNLKSLRRH-MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANAD 1201
++DGK++ + + RR +A+V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLS--------------------------------- 84
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
VGER Q V IARA R A +++LDE T+AL +
Sbjct: 85 -------------VGER---------QMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 1262 EALDRACS-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
+ + R + G I ++HRL + A + V+ DG+V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-21
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 20/215 (9%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDIKSLK-- 498
L N +L++P + A++G SG GKST + + +G++ +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLNEIEEAARVANAYSFIIKL 552
L LR+ IG+V Q+ F +I +N+ G + L EI E + A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
D ++ + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S + ++E + +
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 613 MIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIG 646
T +++ H + R +D A G + E
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236
|
Length = 259 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 7e-21
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 16/198 (8%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
++ H+ Y +P D++L +G+ L ++GPSGCGK++++ L+ F G +
Sbjct: 3 QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANADK 1202
+DGK + R +V Q L + +N+A+G + A + + RL A +
Sbjct: 60 LDGKPVEG---PGAER--GVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQ 111
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
+ + G + QLSGGQ+QRV IARA +++LLDE ALDA + +Q
Sbjct: 112 MLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1263 ALDR--ACSGKTTIVVAH 1278
L + +GK +++ H
Sbjct: 170 LLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 8e-21
Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----P 482
I++K + F Y + + + S+ + K A++G SG GKST + + R +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 483 TSGQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G V G +I + + LR+QIG+V Q P F +I EN+ G P ADL+
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
EI E+A A L ++ + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRL-STIRKADVVA 635
SALD + V+E + T ++ H + R +D A
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTA 220
|
Length = 259 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 8e-21
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 16/223 (7%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDI--RKY 1152
+ + + L+ AL+GPSGCGKS+++ R E + G V + G++I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 1153 NLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE----SATESEIIEAARLANADKFISSL 1207
+ +RR + +V Q P F TIY+N+A G + ++ E+ E A ++L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK---AAL 135
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
D K + + LSGGQ+QR+ IARA K +I+L+DE T+ +D ++E L
Sbjct: 136 WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
Query: 1268 CSGKTTIVVAHR-LSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
T ++V H R + +A + GK+ E+G + +N
Sbjct: 196 KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238
|
Length = 253 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 8e-21
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 22/171 (12%)
Query: 440 RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE---RFYDPTSGQVLLDGHDIKS 496
RILN+ SL V +G+ +A++GSSGSGK+T++ I TSGQ+L +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QP 73
Query: 497 LKLRWLRQQIGLVSQEPALFAT-TIKE------NILLGRPDADLNEIEEAARVANAYSFI 549
K ++ + V Q+ L T++E + L R +D + V
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVL------ 127
Query: 550 IKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
L D T++ V+ +SGG+++R++IA +L +P +L+LDE TS LDS
Sbjct: 128 --LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 8e-21
Identities = 65/246 (26%), Positives = 124/246 (50%), Gaps = 10/246 (4%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L N S ++ G+ + L+G +GSGKST++S R + T G + +DG S+ L+ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY---SFIIKLPDGFDTQVR 561
G++ Q+ +F+ T ++N+ P ++ EE +VA S I + P D +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNL---DPYGKWSD-EEIWKVAEEVGLKSVIEQFPGQLDFVLV 133
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI 621
+ G LS G KQ + +AR++L ILLLDE ++ LD + +++++ L + T ++
Sbjct: 134 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193
Query: 622 AHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKS 681
HR+ + + V+++ V + + +L+ E + + I + N+ KS
Sbjct: 194 EHRIEAMLECQRFLVIEENKVRQYDSIQKLLN--EKSHFKQAISPSDRLKLFPRRNSSKS 251
Query: 682 SARPSS 687
+P
Sbjct: 252 KRKPRP 257
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 9e-21
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK---DIRK-YNLKSLR 1158
D A+ G SG GK+++I L+ P G ++++G+ D RK L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
R + V QE LF ++ N+ YG + A SE R + ++ I L G +G
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELL--GIGHLLGR 127
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACSGKTTIV 1275
+LSGG+KQRVAI RA + ++L+DE +ALD + + L+R A G +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 1276 VAHRLSTI-RNAHVIAVIDDGKVAELGS 1302
V+H L + R A + V++DG+VA G
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 9e-21
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 14/190 (7%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRKYNLK 1155
+++S++ AL+GPSGCGKS+ I + R + G+V I+G+DI + ++
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 1156 --SLRRHMAIVPQEPCLFASTIYENIAYGHE--SATESEIIEAARLA-NADKFISSLPDG 1210
LR+++ +V Q+P F +IY+N+AYG A + ++ A + D
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
K+ + LSGGQ+QR+ IAR K +I+L DE TSALD S +++ +
Sbjct: 148 LKS----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203
Query: 1271 KTTIVVAHRL 1280
T ++V H +
Sbjct: 204 YTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 9e-21
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRKYNLKS 1156
RD + R + +GPSGCGKS+V+ + R + G V G+D+ +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1157 L--RRHMAIVPQEPCLFASTIYENIAYG-----HESATESEIIEAARLANADKFISSLPD 1209
+ RR++ +V Q+P F+ +I++N+A+G ++ + A + A +L D
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
K + G+ LSGGQ+QR+ IARA + E++LLDE SALD + R V+E +
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1270 GKTTIVVAHRL-STIRNAHVIAVID--------DGKVAELGSHSHLLKN 1309
T +V H + IR A A G + E+G + + +N
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 1e-20
Identities = 57/206 (27%), Positives = 109/206 (52%), Gaps = 10/206 (4%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG- 1140
+++++ V+F Y + +++++ + A++GPSGCGKS+++ + R + SG
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 1141 ----RVMIDGKDIRKYNLK--SLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEA 1194
V++D ++I NL +LR+ + +V Q+P F +I++N+A+G +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ ++L D K + + G+ LSGGQ+QR+ IAR + E++L+DE SALD
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 1255 ESERSVQEALDRACSGKTTIVVAHRL 1280
S ++E + T +V H +
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 1e-20
Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 28/236 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS--- 484
I++ ++ F Y ++ +IL S+ + K A++G SG GKST + + R + S
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 485 --GQVLLDGHDI--KSLKLRWLRQQIGLVSQEPALFATTIKENILLG------RPDADLN 534
G+V +I + + L LR+Q+ +V +P LF ++ +N+ G RP +++
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+I E+A L D ++ + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 DIVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 595 SALDSES----EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646
LD + E L+Q R + T ++++H L + + +G+ + IG
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232
|
Length = 261 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-20
Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 12/222 (5%)
Query: 1083 VELKHVDFSYPS-RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ELK + SYPS + + + +SL AG+ +A+VG SG GKS+++ ++ +P+SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1142 VMIDGKDIRKYN---LKSLRR-HMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAAR 1196
+ G+D+ + L LRR H + Q L + T +N+ A + + R
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV---PAVYAGLERKQR 121
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
L A + + L G + V + QLSGGQ+QRV+IARA + +++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 1257 ERSVQEALDRACS-GKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
V L + G T I+V H A + I DG++
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 1e-20
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 23/237 (9%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ L V +S R I + + A G L+GP+G GKS+++ L+ P +G
Sbjct: 1 GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQE-PCLFASTIYENIAYG---HES--ATES-EIIEA 1194
V + G D+ + ++ R +A+V Q+ T+ + +A G H S A +S
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 1195 ARLANADKFISSLPD-GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
A A +S L D T LSGG++QRV +ARA ++ +++LLDE T+ LD
Sbjct: 118 VDRALARTELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169
Query: 1254 AESERSVQEAL-DRACSGKTTIVVAHRLSTIRNA--HVIAVIDDGKVAELGSHSHLL 1307
++ + + A +G T + H L+ + HV+ V+D G+V G +L
Sbjct: 170 VRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV-VLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 25/213 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PSS- 1139
+++K ++ Y S + D++L A +GPSGCGKS+V+ + R +E P +
Sbjct: 5 IDVKDLNIYYGSFHAV---EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1140 --GRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATE 1188
G V++DG+D+ + ++RR + +V Q P F + +I +N+ G
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1189 SEIIEAA-RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
E++E + R AN L + K + + G LSGGQ+QR+ IARA + +++L+DE
Sbjct: 122 DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
SALD S ++++ ++ T ++V H +
Sbjct: 175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 27/223 (12%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV-----MIDG-KDIRKYN--LK 1155
+ L + G+ +A++GPSG GK++++ + +P +G + ID + + + ++
Sbjct: 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81
Query: 1156 SLRRHMAIVPQEPCLFA-STIYENIAYGH---ESATESEIIEAARLANADKFISSLPDGY 1211
LR+H+ V Q LF T+ ENI G + + E AR A ++ Y
Sbjct: 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY 141
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR----A 1267
+LSGGQ+QRVAIARA + E++L DE TSALD E V E L+ A
Sbjct: 142 PR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQLA 191
Query: 1268 CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+T ++V H +S R+ A +D G++ E G L +
Sbjct: 192 QEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-20
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 25/217 (11%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156
D ++ + R G+ +GP+G GK++ I ++ P+SG + G D+ + +
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 1157 LRRHMAIVPQEPCLF-ASTIYENIA-----YG-HESATESEIIEAARLANADKFISSLPD 1209
+RR + IVPQ + T EN+ YG + E E L L +
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF-------ELGE 116
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ---EALDR 1266
VG SGG ++R+ IA + + + +++ LDE T+ LD + R++ AL
Sbjct: 117 AADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172
Query: 1267 ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
G T ++ H + IA+ID G++ G+
Sbjct: 173 E--GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 2e-20
Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 23/266 (8%)
Query: 397 AAAKIFRIIDHKPSIDRNSESGLELDSVSGL-IELKHVDFSYPSRPEV------------ 443
+ +++F+ ID R S G + + L IE H +PS ++
Sbjct: 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230
Query: 444 --RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501
+L + S +V G+ + L+G +GSGKST++S + R T G++ +DG S+ L+
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY---SFIIKLPDGFDT 558
R+ G++ Q+ +F+ T ++N+ P ++ EE +VA S I + PD D
Sbjct: 1290 WRKAFGVIPQKVFIFSGTFRKNL---DPYEQWSD-EEIWKVAEEVGLKSVIEQFPDKLDF 1345
Query: 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTT 618
+ + G LS G KQ + +AR++L ILLLDE ++ LD + +++++ L + T
Sbjct: 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405
Query: 619 LVIAHRLSTIRKADVVAVLQQGSVSE 644
++ HR+ + + V++ SV +
Sbjct: 1406 ILSEHRVEALLECQQFLVIEGSSVKQ 1431
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 2e-20
Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 22/199 (11%)
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSLKLRW--LR 503
L +PA K IA +G SG GKST++ R D G++L +I ++ LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 504 QQIGLVSQEPALFATTIKENILLGRPDAD-----LNE-IEEAARVANAYSFIIKLPDGFD 557
+Q+G+V Q P F +I ENI P A+ L+E +E++ R A + +
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIW-------EEVK 152
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRT 617
+++E+G LSGGQ+QR+ IARA+ P +LL+DE SALD S + V+E T
Sbjct: 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYT 212
Query: 618 TLVIAHRLSTI-RKADVVA 635
+++ H + R AD A
Sbjct: 213 IIMVTHNMQQASRVADWTA 231
|
Length = 274 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 65/213 (30%), Positives = 114/213 (53%), Gaps = 12/213 (5%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PSS---GRVMI--DGKDI--RK 1151
+++++ + AL+GPSGCGKS+ + R ++ P + G +++ D +I +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 1152 YNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE-SATESEIIEAARLANADKFISSLPDG 1210
+ +R +++V Q+P F +I+EN+AYG + I R+ NA + ++L D
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRN-AALWDE 150
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
K +G+ LSGGQ+QR+ IARA EI+L DE TSALD + S++E + +
Sbjct: 151 VKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNK 210
Query: 1271 KTTIVVAHRL-STIRNAHVIAVIDDGKVAELGS 1302
T ++V H + R + A + G++ E G+
Sbjct: 211 VTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243
|
Length = 265 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 22/229 (9%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSLKL 499
++ L +P AL+G SG GKST++ R + G+V L G +I S +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 500 RWL--RQQIGLVSQEPALFA-TTIKENILLG-------RPDADLNEIEEAARVANAYSFI 549
+ R+++G+V Q P F TI +N+ +G + +L+E E A A
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA---- 134
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
L D ++ + LSGGQ+QR+ IARA+ P ILL+DE T+ +D ++E L
Sbjct: 135 --LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 610 DRFMIGRTTLVIAHR-LSTIRKADVVAVLQQGSVSEIGTHDELIAKGEN 657
T +++ H R +D VA L G + E+G ++ E+
Sbjct: 193 FELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
|
Length = 253 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 28/223 (12%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-LRWLRQ 504
LN+ SL V G+ ++G +G+GK+T++ +I P G VL G D+ L + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 505 QIGLVSQEPALF-ATTIKENILL--------------GRPDADLNEIEEAARVANAYSFI 549
IG Q+P +F T+ EN+ L + + IEE
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE-------T 130
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
I L D D LS GQKQ + I ++++P +LLLDE + + E + E L
Sbjct: 131 IGLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186
Query: 610 DRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+ +V+ H + +R AD V VL QGSV G+ D++
Sbjct: 187 KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 15/233 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ L++V +SYP P +++L + G+ + ++G +G GKS++ + P G+V
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1143 MIDGKDIRKYN-LKSLRRHMAIVPQEP--CLFASTIYENIAYGHESAT--ESEIIEAARL 1197
++ G D ++ L+ +R+ + IV Q P T+ E++A+G E+ EI +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A A+ G + + LSGGQ Q VA+A + E ++ DE TS LD +S
Sbjct: 120 ALAEI-------GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 1258 RSVQEALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
+V E + + GKT + + H L + +A I V+D GK+ G ++L +
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 4e-20
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 21/214 (9%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+L N S + G+ +A+ GS+GSGKS+++ +I +P+ G++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSF---IIKLPDGFDTQVR 561
+I Q + TIK+NI+ G +E + V A I P+ T +
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTS-VIKACQLEEDIALFPEKDKTVLG 543
Query: 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-LDRFMIGRTTLV 620
E G+ LSGGQ+ RI++ARA+ K+ + LLD + LD +EK + E+ L + M +T ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 621 IAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ +L ++KAD + +L +G GT EL AK
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-20
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 23/207 (11%)
Query: 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI----KSLKLRWLRQQ 505
+ T+PA AL G SGSGK++++++I P G++ L+G + K + L +++
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 506 IGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
IG V Q+ LF T++ N+ G + + ++ + + + P
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP----------- 126
Query: 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEALDRFMIGRTTLV 620
LSGG+KQR+AI RA+L P +LL+DE ++LD E ++ D I L
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI--PILY 184
Query: 621 IAHRLSTI-RKADVVAVLQQGSVSEIG 646
++H L + R AD V VL+ G V G
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-20
Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 30/242 (12%)
Query: 427 LIELKHVDFSYPSRP--------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
L++++ + ++P R ++ N S T+ G+T+ LVG SGSGKST + R
Sbjct: 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334
Query: 479 FYDPTSGQVLLDGHDIKSLKLRWL---RQQIGLVSQEP--AL-----FATTIKENILLGR 528
+ G++ DG + +L R L R +I +V Q+P +L I+E + + +
Sbjct: 335 LI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ 393
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRER-GVQLSGGQKQRIAIARAMLKNPAI 587
P L+ + +V + G D + R R + SGGQ+QRIAIARA++ P++
Sbjct: 394 PT--LSAAQREQQVIAVMEEV-----GLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446
Query: 588 LLLDEATSALDSESEKLVQEALDRFMIGR--TTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644
++LDE TS+LD + + L L I+H L +R V VL+QG V E
Sbjct: 447 IILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
Query: 645 IG 646
G
Sbjct: 507 QG 508
|
Length = 529 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 4e-20
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I+L V SY + ++N+ S T+ G+ L+G +G+GKST+ ++ P G++
Sbjct: 5 IDLVGVSKSYGDKV---VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILL-GRP-DADLNEIEEAARVAN 544
+ G + S + R R IG+V Q L T++EN+L+ GR EIE + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV--IPS 118
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
F +L D +V LSGG K+R+ +ARA++ +P +L+LDE T+ LD + L
Sbjct: 119 LLEFA-RLESKADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173
Query: 605 VQEALDRFM-IGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652
+ E L + G+T L+ H + R D + VL+ G G LI
Sbjct: 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-20
Identities = 67/257 (26%), Positives = 131/257 (50%), Gaps = 23/257 (8%)
Query: 424 VSGLIELK--HVDFSYPS----RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE 477
+ L+E++ F Y + R V + S T+ G+T+A++G +GSGKST+ ++
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 478 RFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI--LLGRP---DAD 532
+PTSG++L++ H + + ++I ++ Q+P + + I +L P + D
Sbjct: 61 GMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT-SLNPRLRIGQILDFPLRLNTD 119
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
L + ++ + LPD + L+ GQKQR+A+ARA++ P I++ DE
Sbjct: 120 LEPEQRRKQIFETLRMVGLLPDHANYYPH----MLAPGQKQRVALARALILRPKIIIADE 175
Query: 593 ATSALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
A ++LD S+ L+ E ++ G + + + + I+ +D V V+ +G V E G+
Sbjct: 176 ALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233
Query: 648 HDELIAKGENGVYAKLI 664
+++A + + +LI
Sbjct: 234 TADVLASPLHELTKRLI 250
|
Length = 267 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 5e-20
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 460 ALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDI--KSLKLRWLRQQIGLVSQE 512
A++G SG GKST + I R D T+G ++ DG DI K LR++IG+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 513 PALFATTIKENILLG------RPDADLNEI-EEAARVANAYSFIIKLPDGFDTQVRERGV 565
P F +I +NI G L EI E++ R A L D ++ + +
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKA-------ALWDEVSDRLDKNAL 181
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625
LSGGQ+QR+ +AR + P ILLLDE TSALD ++ +++ + T +++ H +
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
|
Length = 286 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 5e-20
Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 4/209 (1%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+ ++S G+ + L+G +G GKS++++ R + G + IDG L+ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 1160 HMAIVPQEPCLFASTIYENI-AYGHESATESEIIEAARLANADKFISSLPDGYKTFVGER 1218
++PQ+ +F+ T +N+ YG S + EI + A I P + +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWS--DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
G LS G KQ + +AR+ + KA+I+LLDE ++ LD + + +++ L +A + T I+ H
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEH 195
Query: 1279 RLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307
R+ + VI++ KV + S LL
Sbjct: 196 RIEAMLECQRFLVIEENKVRQYDSIQKLL 224
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 6e-20
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 19/225 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ + +P + D+SL + G+ AL+G +G GKS+++ ++ Y+P SG +
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1143 MIDGKDIRKYNLKSLRRH-MAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANA 1200
+DGK++R + + R + +V Q L + T+ ENI G E + I A
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
Query: 1201 DKFISSL-----PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DA 1254
+ PD V + LS G++QRV I +A R A +++LDE T+ L
Sbjct: 122 KELSERYGLPVDPDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1255 ESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
E++ + A GKT I + H+L + A + V+ GKV
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 6e-20
Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 33/228 (14%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH-DIKSLK-LRW 501
+ LN+ S +V G+ L+G +G+GK+T++ +I P G+VL DG D+ L R
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI 78
Query: 502 LRQQIGLVSQEPALF-ATTIKEN-------------ILLGRPDADLNEIEEAARVANAYS 547
R IG Q+P +F T++EN L R A EE R+ +
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRA-----EERRRIDELLA 133
Query: 548 FIIKLPDGFDTQVRERGVQ---LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
I L D ER LS GQKQ + I + ++P +LLLDE + + +
Sbjct: 134 -TIGLGD-------ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 605 VQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
E L + LV+ H + +R+ AD V VL +GSV G+ DE+
Sbjct: 186 TAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 6e-20
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL------K 498
+L+N S ++ G+ +A+VGSSGSGKST++ L+ PTSG V+ +G + L +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 499 LRWLRQQIGLVSQEPALFAT-TIKENI----LLGRPDADLNEIEEAARVANAYSFIIKLP 553
LR Q++G + Q L T EN+ L+G+ EI A A
Sbjct: 84 LR--NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--EINSRALEMLAAV------ 133
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
G + + R +LSGG++QR+AIARA++ NP ++L DE T LD+ + + + L
Sbjct: 134 -GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 614 IGRTT--LVIAHRLS 626
+ T LV+ H L
Sbjct: 193 RLQGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 7e-20
Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVI-ALVQRFYEPS--SGRVMIDGKDIRKYNLKS 1156
I D+SL +G+ +A++G SG GK++++ A+ R SG+++ +G+ + +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ- 80
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215
+ +A V Q+ L T+ E + Y + +A R + L D T +
Sbjct: 81 --KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDLALTRI 136
Query: 1216 GERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTT 1273
G V+ +SGG+++RV+IA + ++++LDE TS LD+ + ++ L + A +
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 1274 IVVAH 1278
I+ H
Sbjct: 197 ILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 7e-20
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
LS RAG+ L LVGP+G GKS+++A + SG + G+ + ++ L RH A
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1164 VPQ-EPCLFASTIYENIA-YGHESATESEIIEAARLAN-ADKFISSLPDGYKTFVGERGV 1220
+ Q + FA ++ + + + + + A DK S
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTN------------ 124
Query: 1221 QLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALDAESERSVQEALDRAC-SGKT 1272
QLSGG+ QRV +A ++ +++LLDE ++LD + ++ L C G
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLA 184
Query: 1273 TIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLL 1307
++ +H L+ T+R+AH ++ GK+ G +L
Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 8e-20
Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 54/199 (27%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL+++ + P + +DLS + G L + GPSG GKSS+ + + SGR+
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAY--GHESATESEIIEAARLANA 1200
+ + +PQ P L T+ E + Y
Sbjct: 59 GMPE-----------GEDLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
LSGG++QR+A AR + K + + LDEATSALD ESE +
Sbjct: 92 ---------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
Query: 1261 QEALDRACSGKTTIVVAHR 1279
+ L T I V HR
Sbjct: 131 YQLLKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 64/226 (28%), Positives = 101/226 (44%), Gaps = 40/226 (17%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSS----VIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155
I R +SL G+ ++G +G GK++ ++ L+ SG + +DG+DI K L
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRLDGEDITK--LP 68
Query: 1156 S---LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGY 1211
R +A VPQ +F T+ EN+ G A L + I + Y
Sbjct: 69 PHERARAGIAYVPQGREIFPRLTVEENLLTG-----------LAALPRRSRKI--PDEIY 115
Query: 1212 ------KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD----AESERSVQ 1261
K +G RG LSGGQ+Q++AIARA V + +++LLDE T + + R ++
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175
Query: 1262 EALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306
G ++V L R A V++ G+V G+ L
Sbjct: 176 RLRAEG--GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
+SL R G+ LA++GP+G GKS+++ + P SG V ++G + + + L RH A
Sbjct: 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78
Query: 1163 IVPQEPCL-FASTIYENIAYG---HES---ATESEIIEAARLANADKFISSLPDGYKTFV 1215
++PQ L F T+ E + G H S E E I A LA D
Sbjct: 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATD---------LSGLA 129
Query: 1216 GERGVQLSGGQKQRVAIARAF------VRKAEIMLLDEATSALD-AESERSVQEALDRAC 1268
G LSGG++QRV +AR V + LDE TSALD A +++ A A
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 1269 SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
G + V H L+ + A I ++ G+V GS
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (222), Expect = 2e-19
Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 25/242 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++++ F Y D+ +S G+ ++++G +G GKS+ L+ +E G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESA--TESEII----EA 1194
IDG+ + N+ +LRR + +V Q P +T+ +++A+G E+ E+I EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD- 1253
N F + P +LSGGQKQRVA+A + EI++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1254 ---AESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
E R + E ++ T + + H L ++ I V+ G++ + + S L +
Sbjct: 174 TGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 1311 PD 1312
D
Sbjct: 232 ED 233
|
Length = 277 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-19
Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 39/245 (15%)
Query: 1083 VELKHVDFSYPSRPDIPI----FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
++ ++VD+ Y P P+ ++S G +ALVG +G GKS+++ +PS
Sbjct: 3 IKFENVDYIYS--PGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 1139 SGRVMIDGKDIR----KYNLKSLRRHMAIVPQ--EPCLFASTIYENIAYGHES--ATESE 1190
SG + I G I NLK LR+ +++V Q E LF +T+ +++ +G ++ +E E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 1191 IIEAA-----RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
E A ++ ++ IS P +LSGGQ +RVAIA + EI+ L
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSP-----------FELSGGQMRRVAIAGVMAYEPEILCL 169
Query: 1246 DEATSALDAESERSVQEA-LDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHS 1304
DE + LD E + + + D +G T I+V H + + DD V E H
Sbjct: 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAE-----YADDVLVLE---HG 221
Query: 1305 HLLKN 1309
L+K+
Sbjct: 222 KLIKH 226
|
Length = 287 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 22/226 (9%)
Query: 427 LIELKHVDFSY-PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+I + + + V+ ++ S TV G+ L+G +G+GK+T + ++ +P +G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLG-RPDADLNEIEE 538
+DG D+ R+++G VS L+ T +EN+ L G + D +EE
Sbjct: 61 FATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEE 119
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A + + R S G +Q++AIARA++ +P +LLLDE T+ LD
Sbjct: 120 LADRLGMEELLDR-----------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
Query: 599 SESEKLVQEALDRFM-IGRTTLVIAHRLSTI-RKADVVAVLQQGSV 642
+ + ++E + + +G+ L H + + R D V VL +G V
Sbjct: 169 VMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I+ ++V+ Y + +++ S V G+ L+G +G+GK+T + ++ P +G +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQ----EPALFATTIKENILLGRPDADLNEIEEAARVA 543
L G + S + R RQ++G+V Q +P T++EN+L+ L+ A V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
F KL + D +V E LSGG K+R+ +ARA++ +P +L+LDE T+ LD ++
Sbjct: 121 PLLEFA-KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 604 LVQEALDRFMI-GRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIA 653
L+ E L + G+T L+ H + R D + V+++G G LI
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-19
Identities = 77/257 (29%), Positives = 130/257 (50%), Gaps = 22/257 (8%)
Query: 409 PSIDRNSESGLE-LDSVSG-----LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALV 462
I+R + E S+ G I+L V SY + ++N S TV +G+ L+
Sbjct: 17 SPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLL 73
Query: 463 GSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIK 521
G +G+GKST+ +I P +G++ + G + + + R R +IG+V Q L T++
Sbjct: 74 GPNGAGKSTIARMILGMTSPDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVR 132
Query: 522 ENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581
EN+L+ ++ E A + + F +L D +V + LSGG K+R+ +ARA+
Sbjct: 133 ENLLVFGRYFGMSTREIEAVIPSLLEFA-RLESKADARVSD----LSGGMKRRLTLARAL 187
Query: 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMI-GRTTLVIAHRLSTI-RKADVVAVLQQ 639
+ +P +L+LDE T+ LD + L+ E L + G+T L+ H + R D + VL+
Sbjct: 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247
Query: 640 G-SVSEIGTH---DELI 652
G ++E H DE I
Sbjct: 248 GRKIAEGRPHALIDEHI 264
|
Length = 340 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 61/230 (26%), Positives = 116/230 (50%), Gaps = 14/230 (6%)
Query: 1083 VELKHVDFSYPSRPDI--PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+ L++V ++Y + D++L G A +G +G GKS+++ L+ + P+ G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1141 RVMIDGKDIRKY----NLKSLRRHMAIVPQ--EPCLFASTIYENIAYGHESATESEIIEA 1194
V +D I ++K +R+ + +V Q E LF T+ +++A+G ++ S+ EA
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EA 121
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
LA + + + + + +LSGGQ +RVAIA + +I++LDE T+ LD
Sbjct: 122 EALAREKLALVGISE---SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178
Query: 1255 ESERSVQEALDRA-CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
+ + + + SG T ++V H + + N A + V++ GK+ G
Sbjct: 179 KGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 3e-19
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--PS---SGRVMIDGKDIRK 1151
+ + ++L AL+GPSG GKS+++ + R E P SG V +DG+DI K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1152 YNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE----SATESEIIEAARLANADKFISS 1206
++ LRR + +V Q P + +I+EN+A G + ++ E+ E R A +K +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA-LEK--AQ 131
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR 1266
L D K + +LSGGQ+QR+ IARA + E++L DE T+ LD E+ ++
Sbjct: 132 LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 1267 ACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
T ++V H R + +A + G++ E G + N
Sbjct: 192 LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-19
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 26/222 (11%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
D + + L R G + LVGP+G GK++++ + P++G V++ G D+ +
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1154 LKSLRRHMAIVPQEPCL-FASTIYENIAYG----------HESATESEIIEAARLANADK 1202
++ R +A VPQ+ L F + + + G + + A +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 1203 FISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE-RSV 1260
F +R V LSGG++QRV +ARA + ++LLDE T++LD + R++
Sbjct: 132 FA------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 1261 QEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELG 1301
+ GKT + H L R + ++ DG+V G
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 3e-19
Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 30/232 (12%)
Query: 441 PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500
P V+ L++ S AG+ AL+G +G+GKST++ ++ Y P +G +L+DG +++
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
Query: 501 -WLRQQIGLVSQE----PALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDG 555
L + ++ QE P + T+ EN+ LG+ + A + L
Sbjct: 75 AALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131
Query: 556 FD--TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS-ESEKL---VQEAL 609
D T ++ LS GQ+Q + IA+A+ +N ++ DE TS+L + E E+L ++E
Sbjct: 132 IDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 610 DRFMIGRTTLVIAHRLSTI-RKADVVAVLQQG-------SVSEIGTHDELIA 653
GR L ++HR+ I D + V + G ++++ D+L+
Sbjct: 188 AE---GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV-DRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (220), Expect = 4e-19
Identities = 66/231 (28%), Positives = 125/231 (54%), Gaps = 14/231 (6%)
Query: 427 LIELKHVDFSY-PSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+I+ + V+++Y P+ P R L + L V G AL+G +GSGKST++ + PT
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 485 GQV----LLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEE 538
G+V ++ K +++ +R+++G+V Q P LF T+ +++ G + + + E+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK-EK 119
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A ++A ++ L D F + +LSGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 120 AEKIAAEKLEMVGLADEF---WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 599 SESEKLVQEALDRF-MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
++ + + + G+T +++ H + + AD V +L++G + GT
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 39/242 (16%)
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
++ L+ L++V S+ R R+L++ SL + GK + L+G +G+GKST+V ++ P
Sbjct: 1 MTSLVSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT---TIKENILLGRPDADLNEIEEA- 539
G + +G KLR IG V Q+ L T T+ + L RP +I A
Sbjct: 58 EGVIKRNG------KLR-----IGYVPQKLYLDTTLPLTVNRFLRL-RPGTKKEDILPAL 105
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
RV + +I P Q +LSGG+ QR+ +ARA+L P +L+LDE T +D
Sbjct: 106 KRVQAGH--LIDAP----MQ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
Query: 600 ESEKLVQEALD--RFMIGRTTLVIAHRLSTIR-KADVVAVLQQ-----GSVSEIGTHDEL 651
+ + + +D R + L+++H L + K D V L G+ + H E
Sbjct: 154 NGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEF 213
Query: 652 IA 653
I+
Sbjct: 214 IS 215
|
Length = 251 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 38/225 (16%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
L++V F P R + LSL AGK L+G +G GKS+++ ++ R PS G +++
Sbjct: 14 LRNVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1145 DGKDIRKYNLKSLRRHMAIVPQE-PCLFASTIYENIAYGH----------ESATESEIIE 1193
D + + ++ K+ R +A +PQ+ P T+ E +A G +A ++ E
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
A L L D LSGG++QR IA + + +LLDE TSALD
Sbjct: 131 AISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 1254 AESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVA 1298
+ V + + HRLS R VIAV+ D +A
Sbjct: 180 IAHQVDV-------------LALVHRLSQERGLTVIAVLHDINMA 211
|
Length = 265 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 6e-19
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++++ ++++Y + +++ + G+ A++G +G GKS++ + +PSSGR+
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1143 MIDGK--DIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG--HESATESEIIEAAR 1196
+ DGK D + L LR + +V Q+P LF++++Y+++++G + E E+ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
A I L D LS GQK+RVAIA V + ++++LDE T+ LD
Sbjct: 124 NALKRTGIEHLKDKPTHC-------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1257 ERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKV 1297
+ + L G T I+ H + + + V+ +G+V
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 7e-19
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 32/171 (18%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+ D+SL +G+ +AL+GPSG GK++++ ++ +SG + G D+ + + + R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--R 74
Query: 1160 HMAIVPQEPCLFAS-TIYENIAYG------HESATESEI-------IEAARLAN-ADKFI 1204
+ V Q LF T+++NIA+G E + I +E +LA+ AD++
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1205 SSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
+ QLSGGQKQRVA+ARA + +I+LLDE ALDA+
Sbjct: 135 A---------------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 7e-19
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 30/215 (13%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
R +S R R G+ L+GP+G GK++ I ++ +P+SGR + G D+ + + +RR +
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRI 75
Query: 1162 AIVPQEPCL-FASTIYENIA-------YGHESATE--SEIIEAARLAN-ADKFISSLPDG 1210
IV Q+ + T +EN+ E E+++ L AD+ +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV------ 129
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--AC 1268
KT+ SGG ++R+ IAR+ V + E++ LDE T LD ++ V E +++
Sbjct: 130 -KTY--------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 1269 SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
G T ++ H + +A+ID G++ G+
Sbjct: 181 FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 9e-19
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 39/198 (19%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
L+++ +Y RP + ++SL G+ + LVG +G GKS+++ ++ EP SG V
Sbjct: 5 TLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATE-SEIIEAARLANAD 1201
K +R + + QEP L T+ + + G E +E A AD
Sbjct: 62 RP-KGLR----------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110
Query: 1202 KFISSLPDGYKTFVGERGVQ-----------------------LSGGQKQRVAIARAFVR 1238
L + G LSGG ++RVA+ARA +
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170
Query: 1239 KAEIMLLDEATSALDAES 1256
+ +++LLDE T+ LD ES
Sbjct: 171 EPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 30/208 (14%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503
+LN L +PAG+ +A+VG SG GKST++ L+ P++G+ LL G + L R
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEAR 80
Query: 504 QQIGLVSQEPALFA-TTIKENILLG-----RPDADLNEIEEAARVANAYSFIIKLPDGFD 557
+ L+ Q+ L + +N+ LG R A L + G
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA-LQALAAV---------------GLA 124
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--G 615
+ E LSGGQKQR+A+ARA++ P +LLLDE ALD+ + +Q+ ++ G
Sbjct: 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG 184
Query: 616 RTTLVIAHRLS-TIRKADVVAVLQQGSV 642
T L++ H +S + AD V ++++G +
Sbjct: 185 FTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 1e-18
Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 52/284 (18%)
Query: 1066 EPDDPDATPVPDRLRGEVELKHVDFSYPSRPDI--------PIFRDLSLRARAGKTLALV 1117
EP D P+P+ ++++ + ++P R I + +++S R G+TL LV
Sbjct: 260 EPSG-DPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLV 318
Query: 1118 GPSGCGKSSV-IALVQRFYEPSSGRVMIDGKDIRKYNLKSL---RRHMAIVPQEPCLFAS 1173
G SG GKS+ +AL++ S G + DG+ + N + L R + +V Q+P +S
Sbjct: 319 GESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP--NSS 374
Query: 1174 -----TIYENIAYG------HESATESE--IIEAARLANADKFISSLPDGYKTFVGERGV 1220
+ + I G SA + E +I D P+ + E
Sbjct: 375 LNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD------PETRHRYPAE--- 425
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE---ALDRACSGK---TTI 1274
SGGQ+QR+AIARA + K +++LDE TS+LD ++VQ AL ++ K +
Sbjct: 426 -FSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQQKHQLAYL 480
Query: 1275 VVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
++H L +R H + V+ G+V E G + P Y R
Sbjct: 481 FISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF-AAPQQEYTR 523
|
Length = 529 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-18
Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 44/252 (17%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
I + + S+ V L + +LTV G+ AL+G +G+GKST++ ++ ++PT G
Sbjct: 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT 61
Query: 487 VLLDGHDIKSLKLRWLRQQ-IGLVSQEPALF-ATTIKENILLGR---------PDADLNE 535
+ ++ + L + Q IG++ QE ++ T+ EN+ +GR D E
Sbjct: 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+ A ++ L G + E+ LS KQ + IA+ ++ + ++++DE TS
Sbjct: 122 MRVRAA-------MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
Query: 596 AL-DSESEKLVQEALDRFMI-------GRTTLVIAHRLSTIRK-ADVVAVLQQGS----- 641
+L + E + L F+I G + I+H+L+ IR+ D V++ GS
Sbjct: 175 SLTNKEVDYL-------FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Query: 642 -VSEIGTHDELI 652
VS++ ++D+++
Sbjct: 228 MVSDV-SNDDIV 238
|
Length = 510 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 435 FSYPSRPEVRILN-NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHD 493
F Y P ++ LN +FSL+ G LVG++G GKST+ + P G VL G
Sbjct: 9 FRYQDEPVLKGLNLDFSLSPVTG----LVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64
Query: 494 IKSLK--LRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLNEIEEAARVANAYSFI 549
+ K L LRQQ+ V Q+P +F T I +I + + E E RV A + +
Sbjct: 65 LDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV 124
Query: 550 IKLPDGFDTQ-VRERGVQ-LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
D Q R + +Q LS GQK+R+AIA A++ LLLDE T+ LD +
Sbjct: 125 -------DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 608 ALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656
+ R + G ++ +H + I + +D V VL+QG + G E+ A E
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228
|
Length = 271 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 1095 RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154
R +F LS AG+ L L GP+G GK++++ L+ P++G + +DG DI
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---D 68
Query: 1155 KSLRRHMAIV-PQEPCLFASTIYENIA-----YGHESATESEIIEAARLANADKFISSLP 1208
+ + + A T+ EN+ G E + +EA LA ++ LP
Sbjct: 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP----LAHLP 124
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
GY LS GQK+RVA+AR V I +LDE T+ALDA + E +
Sbjct: 125 FGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 1269 SGKTTIVVA-HRLSTIRNAHVIAV 1291
+ ++ A H + A + +
Sbjct: 175 AQGGIVIAATHIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-18
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L+ V SY + + + L G+ + LVGPSGCGKS+++ +V +SG +
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
I G+ + L+ R +A+V Q L+ ++ EN+AYG ++ E + EAA
Sbjct: 62 WIGGRVVN--ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
R+ + + P R +LSGGQ+QRVA+ RA VR+ + L DE S LDA
Sbjct: 120 RILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 36/234 (15%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V L++V +Y D+ I +D++L G+ + VGPSGCGKS+++ ++ + +SG +
Sbjct: 4 VTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE--SATESEII----EAA 1195
I K R ++ R + +V Q L+ ++ EN+++G + A + EI + A
Sbjct: 61 FIGEK--RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA 118
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA- 1254
+ + P LSGGQ+QRVAI R V + + LLDE S LDA
Sbjct: 119 EVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 1255 -----ESERS-VQEALDRACSGKTTIVVAH-RLSTIRNAHVIAVIDDGKVAELG 1301
E S + + L G+T I V H ++ + A I V+D G+VA++G
Sbjct: 168 LRVQMRIEISRLHKRL-----GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 48/225 (21%)
Query: 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLRRHM 1161
S GKTLA+VG SGCGKS++ L+ P+ G + G+D+ K + K LR+ +
Sbjct: 35 SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI 94
Query: 1162 AIVPQEPCLFAS--------TIYENIAYGHESATESEIIE-----AARLANADKFISSL- 1207
IV Q P + S I E E +I A R A ++ +
Sbjct: 95 QIVFQNP--YGSLNPRKKVGQILE----------EPLLINTSLSAAERREKALAMMAKVG 142
Query: 1208 --PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV----- 1260
P+ Y + SGGQ+QR+AIARA + ++++ DE SALD + V
Sbjct: 143 LRPEHYDRYPH----MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
Query: 1261 --QEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
Q+ L G + + ++H LS + + A + V+ G+ E G+
Sbjct: 199 DLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238
|
Length = 327 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 1091 SYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR 1150
Y R + +SL + G+ + L+GP+G GK++ ++ +P SG++++DG+DI
Sbjct: 9 RYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 1151 KYNL-KSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANA-DKF-ISS 1206
K + K R + +PQE +F T+ ENI E S+ +L ++F I+
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH 125
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
L + LSGG+++RV IARA + +LLDE + +D + + +Q+
Sbjct: 126 LRK-------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK 174
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-18
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 53/261 (20%)
Query: 427 LIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIALVGSSGSGKS-TVVSLIERFYDP-- 482
L+ ++++ ++ + VR ++N+ SL + AG+T+ALVG SGSGKS T +S++ P
Sbjct: 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPV 64
Query: 483 --TSGQVLLDGHDI---KSLKLRWLR-QQIGLVSQEPAL-------FATTIKENILLGR- 528
SG + G + LR +R +I ++ QEP + + E + L R
Sbjct: 65 VYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRG 124
Query: 529 --PDADLNE---------IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577
+A E I +AA+ Y QLSGG++QR+ I
Sbjct: 125 MRREAARGEILNCLDRVGIRQAAKRLTDYPH-----------------QLSGGERQRVMI 167
Query: 578 ARAMLKNPAILLLDEATSALDSESE----KLVQEALDRFMIGRTTLVIAHRLSTIRK-AD 632
A A+L P +L+ DE T+ALD + +L++E L + + L I H LS +RK AD
Sbjct: 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRE-LQQEL-NMGLLFITHNLSIVRKLAD 225
Query: 633 VVAVLQQGSVSEIGTHDELIA 653
VAV+Q G E L +
Sbjct: 226 RVAVMQNGRCVEQNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 25/258 (9%)
Query: 424 VSGLIELKHVD--FSYPS----RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE 477
V L+E++++ F Y + R V + S T+ G+T+A++G +GSGKST+ ++
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 478 RFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-------RPD 530
+PTSG++L+D H + + Q+I ++ Q+P +T++ + R +
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP---STSLNPRQRISQILDFPLRLN 117
Query: 531 ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
DL + ++ + LPD L+ GQKQR+ +ARA++ P +++
Sbjct: 118 TDLEPEQREKQIIETLRQVGLLPD----HASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 591 DEATSALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646
DEA ++LD S+ L+ E ++ I V H +D V V+ QG V E G
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGIS-YIYVTQHLGMMKHISDQVLVMHQGEVVERG 232
Query: 647 THDELIAKGENGVYAKLI 664
+ +++A + + +LI
Sbjct: 233 STADVLASPLHELTKRLI 250
|
Length = 267 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 19/190 (10%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---- 497
E+ IL L V G+TIAL+G SGSGKST+++++ D +SG+V L G + +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 498 --KLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPD 554
KLR + +G V Q L T EN+ L P E +R A + + +L
Sbjct: 82 RAKLR--AKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSR-NGAKALLEQL-- 134
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI 614
G ++ QLSGG++QR+A+ARA P +L DE T LD ++ + + L F +
Sbjct: 135 GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FSL 192
Query: 615 GR---TTLVI 621
R TTL++
Sbjct: 193 NREHGTTLIL 202
|
Length = 228 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-18
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 29/223 (13%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG---HDIKSLK 498
+V I + +L + G+ + VG SG GKST++ +I D TSG + + +D+ +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE 74
Query: 499 LRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD 557
+ +G+V Q AL+ ++ EN+ G A + E RV + +++L D
Sbjct: 75 -----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV-AEVLQLAHLLD 128
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS--------ESEKLVQEAL 609
+ + LSGGQ+QR+AI R ++ P++ LLDE S LD+ E +L +
Sbjct: 129 RKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR-- 182
Query: 610 DRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+GRT + + H ++ + AD + VL G V+++G EL
Sbjct: 183 ----LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 29/195 (14%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD--------- 1148
+P+ +++SL AG+ +AL GPSG GKS+++ + Y P SGR+++ +
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 1149 ------IRKYNLKSLRRHMAIVPQEPCL--FASTIYENIAYGHESATESEIIEAARLANA 1200
+R+ + + + + ++P+ L A + E + + E N
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAR--ELLARLNI 138
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
+ + LP TF SGG++QRV IAR F+ I+LLDE T++LDA + + V
Sbjct: 139 PERLWHLPPA--TF--------SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 1261 QEALDRACSGKTTIV 1275
E + A + ++
Sbjct: 189 VELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 34/199 (17%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL----DGHDI------ 494
+L N SLTV AG+ +AL G SG+GKST++ + Y P SG++L+ D+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 495 KSLKLRWLRQQIGLVSQ----EPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
+ L++R R+ IG VSQ P + A + LL R EAAR A +
Sbjct: 83 EVLEVR--RKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR-----EAARAR-ARELLA 134
Query: 551 KLPDGFDTQVRERGVQL-----SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+L + ER L SGG++QR+ IAR + + ILLLDE T++LD+ + ++V
Sbjct: 135 RL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 606 QEALDRFMIGRTTLV-IAH 623
E + L+ I H
Sbjct: 189 VELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 39/230 (16%)
Query: 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I++K++ + + E++ L+N S+ + G+ IA++G +GSGK+T + + P +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 486 QVLLDGHDIKSLK------------------------LRWLRQQIGLVSQ--EPALFATT 519
+ D K+ K ++ +R+++G+V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 520 IKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579
I+++I+ G P + EEA + A Y ++ L + + ++ +LSGGQK+R+A+A
Sbjct: 123 IEKDIIFG-PVSMGVSKEEAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALAG 178
Query: 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRF----MIGRTTLVIAHRL 625
+ P L+ DE T+ LD + V+E L+ F G+T +++ H L
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVTHDL 225
|
Length = 305 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 5e-18
Identities = 58/208 (27%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+ +DLS G+ + L+G +G GKS++++ + R + G + IDG L++ R+
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292
Query: 1160 HMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERG 1219
++PQ+ +F+ T +N+ +E ++ EI + A I PD + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHR 1279
LS G KQ + +AR+ + KA+I+LLDE ++ LD + + +++ L ++ S T I+ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 1280 LSTIRNAHVIAVIDDGKVAELGSHSHLL 1307
+ + VI+ V + S LL
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLL 1439
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 24/203 (11%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
D+SL + G+ +GP+G GK++ + ++ +P SG + DGK +K R +
Sbjct: 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEALRRIG 75
Query: 1163 IVPQEPCLFAS-TIYENI-----AYGHESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
+ + P + + T EN+ G E+++ L ++ K K F
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK------KKVKGF-- 127
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL-DRACSGKTTIV 1275
S G KQR+ IA A + ++++LDE T+ LD + + ++E + G T ++
Sbjct: 128 ------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181
Query: 1276 VAHRLSTIRN-AHVIAVIDDGKV 1297
+H LS I+ A I +I+ GK+
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI--ERFYDPTSGQVLLDGHDIKSLKL 499
+ IL +LTV G+ A++G +GSGKST+ I Y+ TSG +L G D+ L+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 500 --RWLRQQIGLVSQEP--------ALFATTIKENIL--LGRPDADLNEIEEAARVANAYS 547
R R + L Q P F + G DL + + + A
Sbjct: 72 DER-ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLA-- 128
Query: 548 FIIKLPDGFDTQVRERGVQ--LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
++ + + F R V SGG+K+R I + L P + +LDE S LD ++ K+V
Sbjct: 129 -LLGMDEEF----LNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 606 QEALDRFMI-GRTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHD---ELIAKG 655
E ++R R+ L+I H RL K D V VL G + + G + EL KG
Sbjct: 184 AEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKELEEKG 239
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 7e-18
Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 23/217 (10%)
Query: 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---KLRWLRQQI 506
+L + G+T+ +VG SG GKST I T G+V G D+ + + R +R I
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 507 GLVSQEP-------ALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
++ Q+P I E + P E+++ RV + LP+ +
Sbjct: 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKD--RVKAMMLKVGLLPNLINRY 158
Query: 560 VRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEALDRFMIG 615
E SGGQ QRI IARA++ P +++ DE SALD ++ L+Q+ L R M G
Sbjct: 159 PHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-LQREM-G 212
Query: 616 RTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
+ + IAH L+ ++ +D V V+ G E+GT+DE+
Sbjct: 213 LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 31/241 (12%)
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP----SSGRVMIDGKDIRK 1151
P+ +SL + G+ LALVG SG GKS A ++GRV++DGK +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 1152 YNLKSLRRHMAIVPQEP--------CLFASTIYENIAYGHES--ATESEIIEAARLANAD 1201
L+ R +A + Q P + +A G + AT + +EA L NA
Sbjct: 74 CALRG--RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+ + P ++SGG QR+ IA A + +A ++ DE T+ LD ++ +
Sbjct: 132 RVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 1262 EALDR--ACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
+ L+ ++V H + + R A +AV+ G++ E G L N P R
Sbjct: 181 DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD-VETLFNAPKHAVTRS 239
Query: 1319 I 1319
+
Sbjct: 240 L 240
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 1e-17
Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 1082 EVELKHVDFSYPSRPDIPIFR----DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137
++ + V+ Y + P R D+++ +G +A++G +G GKS+++ + +P
Sbjct: 2 DITFQKVEHRY--QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59
Query: 1138 SSGRVMIDGKDI----RKYNLKSLRRHMAIVPQ--EPCLFASTIYENIAYGHESATESEI 1191
+SG V I + I + LK LR+ + IV Q E LF T+ ++I +G + SE
Sbjct: 60 TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
+A + A + LP+ +LSGGQ +RVAIA + E+++LDE T+
Sbjct: 120 -DAKQKAREMIELVGLPEELLA---RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 1252 LDAESERSVQE---ALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307
LD + + + E L + G TT++V H + A I V+ G V G+ +
Sbjct: 176 LDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 1308 KN 1309
+
Sbjct: 235 AD 236
|
Length = 290 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 1050 RAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109
+ R V ++ + P+ +ELK+V + I DLS +
Sbjct: 6 ESSRGVELPEPKEPKKRHPIEINEPL-------IELKNVSVRRNGKK---ILGDLSWQVN 55
Query: 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRHMAIV---- 1164
G+ A+VGP+G GK+++++L+ + PSSG V + G+ K LR+ + +V
Sbjct: 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSEL 115
Query: 1165 -----PQEPC--LFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
+E + S + +I E T ++ AA+ L D + F
Sbjct: 116 HERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL-AAAQWLLELLGAKHLAD--RPFG-- 170
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD----AESERSVQEALDRACSGKTT 1273
LS G+++RV IARA V+ E+++LDE LD + ++E
Sbjct: 171 ---SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP-GAPAL 226
Query: 1274 IVVAHRLSTI-RNAHVIAVIDDGKVA 1298
+ V H I ++ +G+V
Sbjct: 227 LFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
+ +++ SY R + D+SL +G+ + L+GP+G GK++ ++ P S
Sbjct: 2 MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAI--VPQEPCLFAS-TIYENIAYGHESATES-EIIEAA 1195
G++++D +DI K + R + I +PQE +F T+ +NI E + + E
Sbjct: 59 GKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERK 117
Query: 1196 RLANA--DKF-ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+A ++F I+ L D + LSGG+++RV IARA + +LLDE + +
Sbjct: 118 EELDALLEEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGV 170
Query: 1253 D 1253
D
Sbjct: 171 D 171
|
Length = 243 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 47/253 (18%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
+ L+ + + Y V +L T+ AG+ AL+G +G+GKST++ +I P
Sbjct: 7 TAPPLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP 63
Query: 483 TSGQVLLDGHDIKSLKLRWLRQQIG--LVSQEPALFAT-TIKENILLGRPDADLNEIEEA 539
SG + + G+ L Q+G LV QEP LF ++KENIL G P
Sbjct: 64 DSGTLEIGGNPCARLTPA-KAHQLGIYLVPQEPLLFPNLSVKENILFGLP----KRQASM 118
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLS---------GGQKQRIAIARAMLKNPAILLL 590
++ + G QL +Q + I R ++++ IL+L
Sbjct: 119 QKMKQ--------------LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164
Query: 591 DEATSALD-SESEKL---VQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645
DE T++L +E+E+L ++E L + G + I+H+L IR+ AD ++V++ G+++
Sbjct: 165 DEPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIALS 221
Query: 646 G-----THDELIA 653
G + D++I
Sbjct: 222 GKTADLSTDDIIQ 234
|
Length = 510 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 1e-17
Identities = 109/521 (20%), Positives = 189/521 (36%), Gaps = 60/521 (11%)
Query: 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARL 865
GL LLF F G ++ +R + +L I EE + +
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPI-----EEIDRRGAHNLI 113
Query: 866 ALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVL-QKM 924
L +++ D+I + + +A F LA + + +F + ++A ++
Sbjct: 114 PLLTHDI-----DQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA 168
Query: 925 FMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984
+ F G + H A + +A EL I G R F G I
Sbjct: 169 QLLAFMGGFKFFH-AARDEEDAFNEHTHAIAFGAKELKIHG--------IRRLSFAHGAI 219
Query: 985 AGSGYGVAQFCLYASYALGLWYSS-----------------WLVKHGISDFSKTIRVFMV 1027
S +A L + + + S + I F++
Sbjct: 220 QESANNIADL----HIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVL 275
Query: 1028 LMVSANGAAETL-TLAPDFIKGGRAMRSVFDLLDRKTEIEPD------DPDATPVPDRLR 1080
++ G E L + P + A + + D +R E EP+ D D+
Sbjct: 276 ALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV 335
Query: 1081 GEVELKHVDFSYPSRPDIPIFR--DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
+ELK V + + F + LR G + +VG +GCGKS++ L Y P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA 1198
G +++DG + + R + + + LF I + G ++ ++ RL
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEHASLDNAQQYLQRLE 453
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
ADK + G+ T LS GQ++R+A+ A++ I+L DE + D +R
Sbjct: 454 IADK-VKIEDGGFST-----TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKR 507
Query: 1259 SVQEAL--DRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297
E L D GKT I+++H A I + G +
Sbjct: 508 FFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 37/231 (16%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI-------------R 1150
L+ AG+ +AL+GPSG GKS+++ ++ G++ ++G+ +
Sbjct: 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78
Query: 1151 KYNLKSLRRHMAIVPQEPCLFA-STIYENIAYG-------HESATESEIIEAARLAN-AD 1201
+ +L+ +R + +V Q LF T+ +N+ + E +E + AD
Sbjct: 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD 138
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
K +P QLSGGQ+QRVAIARA + ++ML DE TSALD E V
Sbjct: 139 K-ADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 1262 EALDRACSGK--TTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+ R S T ++V H + R A + D G++ E G + +
Sbjct: 187 NVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 2e-17
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 18/217 (8%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL---K 498
EV + S + G+T++LVG SGSGKST + R + G+++ +G I +L K
Sbjct: 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGK 395
Query: 499 LRWLRQQIGLVSQEPALFAT-----TIKENILLG-RPDADLNEIEEAARVANAYSFIIKL 552
L+ LR+ I + Q+P +A+ T+ ++I+ R L AARVA + L
Sbjct: 396 LQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL 453
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD-SESEKLVQEALD- 610
P+ + SGGQ+QRI IARA+ NP +++ DEA SALD S +++ LD
Sbjct: 454 PE----HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
Query: 611 RFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIG 646
+ G L I+H ++ + R + VAV+ G + EIG
Sbjct: 510 QRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LK 1155
P+ ++SL G+T+ L+G SGCGKS++ L+ +P+ G V G+D+ + + +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 1156 SLRRHMAIVPQEPCLFA----STIYENIAYGHESATESEIIEAARLANADKFIS--SLPD 1209
+ RR + +V Q+ A T+ + I T + E+ + A + + L
Sbjct: 85 AFRRDVQLVFQD-SPSAVNPRMTVRQIIGEPLRHLTSLD--ESEQKARIAELLDMVGLRS 141
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD--RA 1267
+ QLSGGQ QR+ IARA K ++++LDEA S LD + + E L +
Sbjct: 142 ---EDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198
Query: 1268 CSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLL 1307
G + + H L + +AV+D G++ E + LL
Sbjct: 199 AFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 15/236 (6%)
Query: 1083 VELKHVDFSYPSRPD---IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
++ K+V + Y S + D++L + G+ L ++G +G GKS++ + PS
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1140 GRVMIDGKDIRKY-NLKSLRRHMAIVPQEP--CLFASTIYENIAYGHES-ATESEIIEAA 1195
G+V +DG D NL +R +V Q P + A+ + E++A+G E+ E I
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE- 123
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
R+ + K + Y+ LSGGQKQRVAIA + E ++ DE T+ LD
Sbjct: 124 RVDESLKKVGMYE--YRRHAPH---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 1256 SERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
R V + G T I++ H + A I V+D GKV G+ + K
Sbjct: 179 GRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
|
Length = 280 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 38/180 (21%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
R + +F DLS AG+ L + GP+G GK++++ ++ P +G V G+ I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-- 68
Query: 1154 LKSLRRHMAIVPQEPCLFASTIYENIAY-GHESATESEIIEAARLANADKFISSLPDGYK 1212
+ ++ + Y GH+ ++E+ L F
Sbjct: 69 -----------------VRESYHQALLYLGHQPGIKTELTALENL----HFWQRFHGSGN 107
Query: 1213 T--------FVGERGV------QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
VG G+ QLS GQ++RVA+AR ++ A + +LDE +ALD E
Sbjct: 108 AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167
|
Length = 209 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-17
Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 27/234 (11%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT--- 483
L+E+K++ ++ V+ L+N SL V AG+ ++L G +G+GKST++ ++ Y P
Sbjct: 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTY 60
Query: 484 SGQVLLDGHDIKSLKLRWL-RQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAAR 541
G+++ +G ++++ +R R I ++ QE AL ++ ENI LG NEI
Sbjct: 61 EGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG------NEITPGGI 114
Query: 542 V------ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+ A + +L D L GQ+Q + IA+A+ K +L+LDE T+
Sbjct: 115 MDYDAMYLRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172
Query: 596 AL-DSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
+L +SE+ L+ D G + I+H+L+ ++ +D + V++ G IGT
Sbjct: 173 SLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG--RHIGT 224
|
Length = 506 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 8e-17
Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 51/254 (20%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKS----SVIALV-QRFYEPSSGRVMIDGKDIRK 1151
+ + +S AG+TLALVG SG GKS S++ L+ SG ++ DG+D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 1152 YNLKSLRR----HMAIVPQEPCLFAS-----TIYENIAYGHES-------ATESEIIEAA 1195
+ + LR + ++ QEP S TI + +A A + +E
Sbjct: 82 ASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 1196 R---LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+ +K + + P +LSGGQ+QRV IA A + ++++ DE T+AL
Sbjct: 140 ELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1253 DAESE-------RSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304
D + + +Q L G + + H L +R A + V+ G++ E G +
Sbjct: 189 DVTVQAQILDLLKELQAEL-----GMAILFITHDLGIVRKFADRVYVMQHGEIVETG-TT 242
Query: 1305 HLLKNNPDGCYARM 1318
L P Y R
Sbjct: 243 ETLFAAPQHPYTRK 256
|
Length = 534 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (201), Expect = 9e-17
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 26/264 (9%)
Query: 1077 DRLRGEVELKHVDFSYPSRPDI---------PIFRDLSLRARAGKTLALVGPSGCGKSSV 1127
+RL G+ VD + P+ + + +S+ A +L+GP+G GK++
Sbjct: 4 ERLGGQSGAADVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTF 63
Query: 1128 IALVQRFYEPSSG-----RVMIDGKDIRKY-NLKSLRRHMAIVPQEPCLFASTIYENIAY 1181
+ + R + SG V++ G+ I Y ++ RR + ++ Q P F +I +N+
Sbjct: 64 LRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLA 123
Query: 1182 G---HESATESEI--IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236
G H+ E + ARL L D K + + +LSGGQ+Q + +AR
Sbjct: 124 GVRAHKLVPRKEFRGVAQARLTEV-----GLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178
Query: 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLS-TIRNAHVIAVIDDG 1295
E++LLDE TSALD + ++E + T I+V H L+ R + A+ DG
Sbjct: 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238
Query: 1296 KVAELGSHSHLLKNNPDGCYARMI 1319
++ E G L + AR +
Sbjct: 239 RLVEEGPTEQLFSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 9e-17
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 15/233 (6%)
Query: 1073 TPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQ 1132
T RLRGE + Y + +L++ G A++GP+GCGKS+++ +
Sbjct: 2 TESVARLRGE----QLTLGYGKYT---VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54
Query: 1133 RFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEI 1191
R P+ G V +DG+ I+ Y K + R + ++ Q T+ E +A G +
Sbjct: 55 RLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYP--HQPL 112
Query: 1192 IEAARLANADKFISSL-PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
R + + ++ G + LSGGQ+QR IA ++ IMLLDE T+
Sbjct: 113 FTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
Query: 1251 ALDAESERSVQEALDR--ACSGKTTIVVAHRLS-TIRNA-HVIAVIDDGKVAE 1299
LD + + E L G T V H L+ R A H+IA+ + VA+
Sbjct: 173 WLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225
|
Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 28/222 (12%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI------------- 1149
++S K ++G SG GKS+++ + G + + DI
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV--GDIYIGDKKNNHELIT 101
Query: 1150 ----RKY-NLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATESEIIEAARLANADK 1202
+K N K LRR +++V Q P LF TI ++I +G + + EA +LA
Sbjct: 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS-EAKKLAK--F 158
Query: 1203 FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS-VQ 1261
+++ + +++ LSGGQK+RVAIA + EI++ DE T+ LD + E +Q
Sbjct: 159 YLNKMGLDD-SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217
Query: 1262 EALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
LD + KT V+ H + + A + V+D GK+ + G+
Sbjct: 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 79/241 (32%), Positives = 128/241 (53%), Gaps = 33/241 (13%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L+ V SY + +V + L V G+ I LVG SG GKST++ ++ TSG++
Sbjct: 4 LKLQAVRKSYDGKTQV--IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPDADLNE-IEEAA 540
+ G + L+ + I +V Q AL+ +++EN+ + G P A++ E + EAA
Sbjct: 62 WIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
R I++L D + R +LSGGQ+QR+A+ RA+++ PA+ L DE S LD+
Sbjct: 120 R-------ILELEPLLDRKPR----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA- 167
Query: 601 SEKL-VQ-----EALDRFMIGRTTLVIAH-RLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
KL VQ + L R + T+L + H ++ + AD V V+ G +IGT E+
Sbjct: 168 --KLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224
Query: 654 K 654
K
Sbjct: 225 K 225
|
Length = 356 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-16
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 58/211 (27%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR-WLRQ 504
+ + S V AG+ + + G G+G++ + + P SG++ LDG + R +R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 505 QIGLVSQEP---ALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQV 560
I V ++ L ++ ENI L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIALSS-------------------------------- 103
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEALDRFMIGR 616
LSGG +Q++ +AR + ++P +L+LDE T +D +E +L++E D G+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA---GK 155
Query: 617 TTLVIAHRLST-----IRKADVVAVLQQGSV 642
L+I S+ + D + V+ +G +
Sbjct: 156 AVLLI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 45/252 (17%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPTSGQVLLD---------- 490
+L N S T+ G+ + ++G SG+GKS ++ ++ Y+PTSG+++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 491 -------------GHDIKSLKL----------RWLRQQIGLVSQEP-ALFAT-TIKENIL 525
G ++ ++ R +R++I ++ Q AL+ T+ +N+L
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 526 LGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585
+ E +EA A +++L R+ LSGG+KQR+ +AR + K P
Sbjct: 133 EALEEIGY-EGKEAVGRAVDLIEMVQLSHRITHIARD----LSGGEKQRVVLARQLAKEP 187
Query: 586 AILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
+ L DE T LD ++ KLV AL+ + G + ++ +H I +D L+ G +
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Query: 643 SEIGTHDELIAK 654
E GT DE++A
Sbjct: 248 KEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 105/495 (21%), Positives = 200/495 (40%), Gaps = 59/495 (11%)
Query: 826 IVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQ 885
+G++ ++R + + +L + E SAR+ A L D N+ S R+ +VQ
Sbjct: 74 TLGQHFIYKLRSEFIKKILDTPLERI--ERLGSARLLAGLTSDVRNI-SFAFSRLPELVQ 130
Query: 886 NTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMF--MKGFSGDMEAAHSKATQL 943
A++L +A ++ L+ + + V + T+ + + M AA +
Sbjct: 131 --AIILTLGSAAYL--AYLSPKMFLLTVVWIVVTIWGGFVLMARVYKH-MAAA----RET 181
Query: 944 AGEAIGNVRTVAAFNSELMI---------VGLFSSNLQTPLRRCFWKGQIAGSGYGVAQF 994
+ + +T+ EL + L+ + Q +
Sbjct: 182 EDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNI 241
Query: 995 CLYASYALGLWYS---SWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRA 1051
L L W + W + + + ++SA G TL A
Sbjct: 242 MLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTA--------- 292
Query: 1052 MRSVFDLLDRKTEIEP--DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109
+ F+ + + D P PD + +EL++V F+Y + ++L +
Sbjct: 293 -QVAFNKIAKLELAPYKADFPRPQAFPD-WKT-LELRNVRFAYQ--DNAFHVGPINLTIK 347
Query: 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC 1169
G+ + L+G +G GKS++ L+ Y+P SG +++DGK + L+ R+ + V +
Sbjct: 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407
Query: 1170 LFASTIYENIAYGHESATESEIIEA--ARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227
LF + G E ++IE RL A K +SL DG + ++LS GQK
Sbjct: 408 LFDQLL------GPEGKASPQLIEKWLQRLELAHK--TSLNDGRFS-----NLKLSTGQK 454
Query: 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL--DRACSGKTTIVVAHRLSTIRN 1285
+R+A+ A + + +I++LDE + D R + L GKT ++H +
Sbjct: 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH 514
Query: 1286 AHVIAVIDDGKVAEL 1300
A + + +G+++EL
Sbjct: 515 ADRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
LSL G + ++G +G GKS+++ + +P+SG+++IDG D+ K ++
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 1159 RHMAIVPQEPC--LFAS-TIYENIA--------YGHESATESEIIEAARLANADKFISSL 1207
+A V Q+P TI EN+A G SA + R ++ L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER-----LARL 134
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA 1267
G + + +R LSGGQ+Q +++ A + +I+LLDE T+ALD ++ V E +
Sbjct: 135 GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI 194
Query: 1268 CSGK--TTIVVAHRL-STIRNAHVIAVIDDGKV 1297
TT++V H + + + + ++ GK+
Sbjct: 195 VEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-16
Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 22/244 (9%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDL---SLRARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137
++ L +V ++Y + F+ L SL + K ++G +G GKS++I L
Sbjct: 5 KDIILDNVSYTYAKKTPFE-FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1138 SSGRVMIDGKDI-----RKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYG--HESATE 1188
+G+ ++ I + +K LR+ + +V Q P LF TI ++IA+G + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1189 SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
E + ++ K + LP+ Y V +LSGGQK+RVA+A ++LDE
Sbjct: 124 QEAYK--KVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1249 TSALDAESERSVQEALDRACS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSH 1305
T LD + E +R K I+V H + + R A + V+ +GKV +GS
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 1306 LLKN 1309
+ N
Sbjct: 238 IFSN 241
|
Length = 289 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 39/262 (14%)
Query: 1082 EVELKHVDFSYPS----RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137
EV F Y + R + + +S R G+TLA++G +G GKS++ ++ EP
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1138 SSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC------LFASTIYEN----IAYGHESAT 1187
+SG ++I+ + + + + ++ Q+P L I +
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQR 125
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
+I E R+ + LPD + L+ GQKQRVA+ARA + + +I++ DE
Sbjct: 126 RKQIFETLRM------VGLLPDHANYYPH----MLAPGQKQRVALARALILRPKIIIADE 175
Query: 1248 ATSALDAESERS--------VQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
A ++LD S RS +QE G + I V + I++ + + V+ +G+V
Sbjct: 176 ALASLDM-SMRSQLINLMLELQEKQ-----GISYIYVTQHIGMIKHISDQVLVMHEGEVV 229
Query: 1299 ELGSHSHLLKNNPDGCYARMIQ 1320
E GS + +L + R+I+
Sbjct: 230 ERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 2e-16
Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 435 FSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI 494
F RP V LN +T + A +G +G+GK+T +S++ PTSG VL+ G DI
Sbjct: 938 FEPSGRPAVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 495 KSLKLRWLRQQIGLVSQEPALFA-TTIKENILL-----GRPDADLNEIEEAARVANAYSF 548
++ L +RQ +G+ Q LF T+ E+IL GR + ++E A + +
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDT--- 1049
Query: 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
G + E LSGG ++++++A A + + +++LDE TS +D S + + +
Sbjct: 1050 ------GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL 1103
Query: 609 LDRFMIGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
L ++ GRT ++ H + D +A++ QG + GT L G Y L+R
Sbjct: 1104 LLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 27/262 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI-DGK---DIRKYNLKSLR 1158
+ SL G+ L+G SG GKS+++ V S G V++ DG D+ + +LR
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 1159 R----HMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANADKFIS--SLPDGY 1211
R +++V Q+ L T+ EN+A+G E + A R D+ + L
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPK---AERRKRVDEQLELVGLAQWA 158
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-- 1269
GE LSGG +QRV +ARAF +A I+L+DE SALD +Q+ L S
Sbjct: 159 DRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKL 214
Query: 1270 GKTTIVVAHRL-STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 1328
KT + V+H L ++ + IA+++ G++ + G+ ++ N + A + H+
Sbjct: 215 KKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVA-----HTN 269
Query: 1329 VIGMTSGSSSSARPKDDEEREA 1350
+ + + RP E+
Sbjct: 270 PLNVLTA-RDLMRPLTTLEKVD 290
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 3e-16
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 31/239 (12%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY--DPTS 484
L+E+K + ++ V+ L+ L V G+ + L G +G+GKST++ ++ Y
Sbjct: 1 LLEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWD 57
Query: 485 GQVLLDGHDIKSLKLRWL-RQQIGLVSQEPALFAT-TIKENILLGRPDADLNEI------ 536
G++ G +K+ +R R I ++ QE L ++ ENI LG NEI
Sbjct: 58 GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG------NEITLPGGR 111
Query: 537 -EEAARVANAYSFI--IKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDE 592
A A + + ++L T R V GGQ+Q + IA+A+ K +L+LDE
Sbjct: 112 MAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQLVEIAKALNKQARLLILDE 167
Query: 593 ATSAL-DSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
+S+L + E+E L+ D G + I+H+L+ ++ D + V++ G + T D
Sbjct: 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG--QHVATKD 224
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 18/217 (8%)
Query: 1095 RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN- 1153
+ ++SL ++G+T+AL+G SGCGKS++ L+ PS G V G+ + K N
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 1154 --LKSLRRHMAIVPQEPCLFA----STIYENIAYGHESATESEIIEAARLANADKFISS- 1206
K+ RR + +V Q+ + A T+ E I + +A RLA A + + +
Sbjct: 82 AQRKAFRRDIQMVFQDS-ISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAV 138
Query: 1207 -LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265
L D + + +R QLSGGQ QRV +ARA + ++++LDEA S LD + V L
Sbjct: 139 DLDD---SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLK 195
Query: 1266 --RACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAE 1299
+ G + + H L + R + V+D+G++ E
Sbjct: 196 KLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 4e-16
Identities = 60/244 (24%), Positives = 124/244 (50%), Gaps = 30/244 (12%)
Query: 1083 VELKHVDFSYPSRPDIPI----FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
++ + V+++Y +P+ P D+ L + G AL+G +G GKS+++ + +P+
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 1139 SGRVMIDGKDI------RKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHE----SA 1186
G+V + DI ++ +K +R+ + +V Q P LF T+ +++A+G +
Sbjct: 60 EGKVTVG--DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK 117
Query: 1187 TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLD 1246
++E I A +L + F + +LSGGQ +RVAIA + E+++LD
Sbjct: 118 EKAEKIAAEKL--------EMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169
Query: 1247 EATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304
E T+ LD ++ + + + SG+T ++V H + + + A + +++ G + G+ S
Sbjct: 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
Query: 1305 HLLK 1308
+ +
Sbjct: 230 DVFQ 233
|
Length = 288 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 4e-16
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 1115 ALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS- 1173
A +G +G GK++ ++++ P+SG V++ GKDI NL ++R+ + + PQ LF
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHL 1018
Query: 1174 TIYENIAYGHESATESEIIEAARLANADKFISSLPD-GYKTFVGERGVQLSGGQKQRVAI 1232
T+ E+I + + S E A+L + + L D G E LSGG ++++++
Sbjct: 1019 TVAEHILFYAQLKGRSW--EEAQL----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072
Query: 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAV 1291
A AFV A++++LDE TS +D S RS+ + L + SG+T I+ H + IA+
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAI 1132
Query: 1292 IDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSAR 1341
I G++ G+ L G Y +++ + SQ G S +++
Sbjct: 1133 ISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSK 1182
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 69/250 (27%), Positives = 122/250 (48%), Gaps = 41/250 (16%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V+++ V F+ R + IF ++SL GK A++GPSG GK++++ L+ P G +
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1143 MIDGKDI---RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAY---GHESATESEI---- 1191
+ DG++I + L ++R+ M+++ Q LF +++N+AY H +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 1192 ---IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248
+EA L A K + S +LSGG +R A+ARA + ++++ DE
Sbjct: 125 MMKLEAVGLRGAAKLMPS--------------ELSGGMARRAALARAIALEPDLIMFDEP 170
Query: 1249 TSALDAESERSVQEALDRACS--GKTTIVVAHR----LSTIRNAHVIAVIDDGKVAELGS 1302
D + + + + S G T +VV+H LS +A+++A D K+ GS
Sbjct: 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA---DKKIVAHGS 227
Query: 1303 HSHLLKNNPD 1312
+ L+ NPD
Sbjct: 228 -AQALQANPD 236
|
Length = 269 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 425 SGLIE-LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
GLI LK EV L S T+ G+ + +G +G+GK+T + ++ PT
Sbjct: 17 PGLIGSLKS--LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT 74
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLV--SQEPALFATTIKENILLGRPDADLNEIEEAAR 541
SG+V + G + ++LR +IG+V + + + ++ L DL R
Sbjct: 75 SGEVRVAGLVPWKRRKKFLR-RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKR 133
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ S ++ L + DT VR QLS GQ+ R IA A+L P IL LDE T LD +
Sbjct: 134 LDE-LSELLDLEELLDTPVR----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 602 EKLVQEALDRFMIGRTTLVI--AHRLSTIRK-ADVVAVLQQG 640
++ ++ L + R T V+ +H + I A V V+ +G
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPS---SGRVMIDGKDIRKYNLKSLRRHMAIVPQE 1167
G+ + L+GPSGCGKS++++ + +G + ++ + + L + +R + I+ Q+
Sbjct: 28 GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPAAQRQIGILFQD 85
Query: 1168 PCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226
LF ++ +N+ + A + + AR A+ + G + LSGGQ
Sbjct: 86 ALLFPHLSVGQNLLF----ALPATLKGNARRNAANAALERS--GLDGAFHQDPATLSGGQ 139
Query: 1227 KQRVAIARAFVRKAEIMLLDEATSALDA 1254
+ RVA+ RA + + + +LLDE S LD
Sbjct: 140 RARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 76/258 (29%), Positives = 115/258 (44%), Gaps = 49/258 (18%)
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP----TSGQVLLDGH 492
++P V SLT+ G+ +ALVG SGSGKS + T+G+VLLDG
Sbjct: 13 QAAQPLVH---GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 493 DIKSLKLRWLRQQIGLVSQEP-ALF------ATTIKENIL-LGRPDAD------LNEI-- 536
+ LR ++I + Q P + F T +E L LG+P D L +
Sbjct: 70 PVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E AARV Y F ++SGG QR+ IA A+L ++ DE T+
Sbjct: 128 ENAARVLKLYPF-----------------EMSGGMLQRMMIALALLCEAPFIIADEPTTD 170
Query: 597 LDSESEKLVQEALDRFMIGRT--TLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIA 653
LD ++ + + L+ + R L++ H + + R AD VAV+ G + E G + L
Sbjct: 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
Query: 654 KGENGVYAKLIRMQEAAH 671
++ V R +AH
Sbjct: 231 APKHAV----TRSLVSAH 244
|
Length = 254 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 33/229 (14%)
Query: 447 NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506
NN +L V + ++L+G +G+GK+TV + + FY PT G +LL G I+ L QI
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQI 77
Query: 507 ---GLVS--QEPALFAT-TIKENI---------------LLGRPDADLNEIEEAARVANA 545
G+V Q LF T+ EN+ LL P E E R A
Sbjct: 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
+ L + R+ G L+ GQ++R+ IAR M+ P IL+LDE + L+ + K +
Sbjct: 138 LERVGLL----EHANRQAG-NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 606 QEALD--RFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
E + R T L+I H + + +D + V+ QG+ GT +E+
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 8e-16
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVI-ALVQRFYEPS--SGRVMIDGKDIRKYNLKS 1156
+ +++S A+ G+ LA++G SG GK++++ AL R + SG V+++G + K
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKE 96
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYG-----HESATES-------EIIEAARLANADKF 1203
+R A V Q+ + T+ E++ + T+ E+++A L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263
+P K LSGG+++R+A A + ++ DE TS LD+ SV +
Sbjct: 157 RIGVPGRVKG--------LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 1264 LDRAC-SGKTTIVVAHRLST--IRNAHVIAVIDDGKVAELGSHSHLLK 1308
L GKT I H+ S+ I ++ +G+VA LGS +
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 9e-16
Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 46/256 (17%)
Query: 427 LIELKHVDFSYPS--RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+I++++V Y S R V+ ++N SL V G+ +VG+SG+GK+T+ +I +PTS
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 485 GQV-LLDGHD-IKSLKLRWL-----RQQIGLVSQEPALFA-TTIKEN----ILLGRPDAD 532
G+V + G + + K ++ IG++ QE L+ T+ +N I L PD
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD-- 396
Query: 533 LNEIEEAARVA------------NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580
E A A A + K PD +LS G++ R+A+A+
Sbjct: 397 ----ELARMKAVITLKMVGFDEEKAEEILDKYPD-----------ELSEGERHRVALAQV 441
Query: 581 MLKNPAILLLDEATSALDSESEKLVQEAL--DRFMIGRTTLVIAHRLSTIRK-ADVVAVL 637
++K P I++LDE T +D ++ V ++ R + +T ++++H + + D A++
Sbjct: 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501
Query: 638 QQGSVSEIGTHDELIA 653
+ G + +IG +E++
Sbjct: 502 RDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 36/230 (15%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
LK + + +D+S G+ + ++G +G GKS+++ L+ Y+P+SG+V
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIA-----YGHE----SATESEIIEA 1194
+ GK L P+ T ENI G EIIE
Sbjct: 86 VTGKVAPLIEL-----GAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEIIEF 134
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A L FI P KT+ S G R+A + A + +I+LLDE + DA
Sbjct: 135 AEL---GDFI-DQP--VKTY--------SSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180
Query: 1255 E-SERSVQEALDRACSGKTTIVVAHRLSTIRNA-HVIAVIDDGKVAELGS 1302
E+ ++ + KT ++V+H L I+ ++ G++ GS
Sbjct: 181 AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-----LRRHMAI 1163
R G+ L G SG GKS+++ L+ PS+G++ G DI + LK+ LRR + +
Sbjct: 26 RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITR--LKNREVPFLRRQIGM 83
Query: 1164 VPQEP-CLFASTIYENIAYGHESATES-EIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
+ Q+ L T+Y+N+A A S + I A DK L D K F +Q
Sbjct: 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV--GLLDKAKNF----PIQ 137
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALD-AESERSVQ--EALDRACSGKTTIVVAH 1278
LSGG++QRV IARA V K ++L DE T LD A SE ++ E +R G T ++ H
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATH 195
Query: 1279 RLSTI-RNAHVIAVIDDGKV 1297
+ I R ++ + + DG +
Sbjct: 196 DIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
D+S G+ L+GP+G GK++ I ++ P SG V+ DGK + + R +
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IAARNRI 72
Query: 1162 AIVPQEPCLFAS-TIYENIAY-------GHESATESEIIEAARLANADKFISSLPDGYKT 1213
+P+E L+ + + + Y E A D+++ L
Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA----------RRRIDEWLERL--ELSE 120
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL-DRACSGKT 1272
+ +R +LS G +Q+V A + E+++LDE S LD + +++ + + A +GKT
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 1273 TIVVAHRLSTI-RNAHVIAVIDDGKV 1297
I+ H++ + + +++ G+
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 1e-15
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 52/208 (25%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
RD+S RAG+ + + G G G++ + + P+SG + +DGK + + + + R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 1161 -MAIVPQEP----CLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215
+A VP++ + ++ ENIA +SSL
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA-----------------------LSSL-------- 104
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTI 1274
LSGG +Q+V +AR R +++LDE T +D ++ + + A +GK +
Sbjct: 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 1275 VVAHRLST-----IRNAHVIAVIDDGKV 1297
++ S+ + I V+ +G++
Sbjct: 159 LI----SSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 42/242 (17%)
Query: 1074 PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133
P ++ + + +D+S G+ + L+G +G GKS+++ L+
Sbjct: 11 PTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70
Query: 1134 FYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIA-----YGHESATE 1188
Y P SG V + G+ L P+ T ENI G S E
Sbjct: 71 IYPPDSGTVTVRGRVSSLLGL-----GGGFNPE------LTGRENIYLNGRLLGL-SRKE 118
Query: 1189 S-----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV--AIARAFVRKAE 1241
EIIE + L FI LP KT+ S G K R+ AIA A + +
Sbjct: 119 IDEKIDEIIEFSEL---GDFID-LP--VKTY--------SSGMKARLAFAIATAL--EPD 162
Query: 1242 IMLLDEATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
I+L+DE + DA + Q L GKT I+V+H S+I+ V++ GK+
Sbjct: 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
Query: 1300 LG 1301
G
Sbjct: 223 DG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-15
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 30/269 (11%)
Query: 370 TMFAVMIGGLALAQAAPSISAFAKAKVA----AAKIFRIIDHKPSIDRNSESGLELDSVS 425
T +M A Q S+S F A A + R+ + + +++ +
Sbjct: 321 TFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG 380
Query: 426 GLIELKH--------VDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE 477
I+ + S + +L+ + V G+ + + G SG+GK++++ +
Sbjct: 381 RRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALA 440
Query: 478 RFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLN--E 535
+ SG++ + + + Q P L T++E + D + E
Sbjct: 441 GLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAE 489
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+ +L D D R LSGG++QR+A AR +L P + LDEATS
Sbjct: 490 LVAVLHKVGLGDLAERL-DEEDRWDRV----LSGGEQQRLAFARLLLHKPKWVFLDEATS 544
Query: 596 ALDSESEKLVQEALDRFMIGRTTLVIAHR 624
ALD E+E + + L + T + + HR
Sbjct: 545 ALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-15
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 447 NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL---DGH-DIKSL---KL 499
+N SL + G+ L+G SGSGKST++ + + G VL+ DG D+ + L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 500 RWLRQ-QIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD 557
R LR ++ +V Q+ AL T++EN+ G + + E RV ++ L D
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLE-LVGLAQWAD 159
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IG 615
+ E LSGG +QR+ +ARA ILL+DE SALD +Q+ L +
Sbjct: 160 RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 616 RTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELIAKGEN 657
+T + ++H L ++ + +A+++ G + + GT +E++ N
Sbjct: 216 KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 28/224 (12%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKST----VVSLIERFYDPTSGQVLLDGHDIKSLKL 499
R++ + SLTV +G+ + L+G +G+GK+T VV ++ R +G +++D DI L L
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPL 72
Query: 500 RW-LRQQIGLVSQEPALFAT-TIKEN---ILLGRPDADLNEIEEAARVANAYSFIIKLPD 554
R+ IG + QE ++F ++ +N +L R D + E+ A I L D
Sbjct: 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES----EKLVQEALD 610
G LSGG+++R+ IARA+ NP +LLDE + +D S +++++ D
Sbjct: 133 SM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 611 RFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDELIA 653
G L+ H + T+ + ++ QG + GT E++
Sbjct: 186 S---GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 440 RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL 499
R + + S T+ AG+ + L G +GSGK+T++ LI P +G + LDG DI +
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 500 RWLRQQIG-LVSQEPALFATTIKENI-----LLGRPDADLNEIEEAARVANAYSFIIKLP 553
+G + +PAL T+ EN+ LG + D I A + L
Sbjct: 72 AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELD---IAAALE-------AVGLA 118
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
LS GQK+R+A+AR ++ N I +LDE T+ALD+ + L E
Sbjct: 119 PLAHLPFGY----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 3e-15
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 19/219 (8%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504
+ N ++ +P G A++G +G GKST++ + R P G V LDG I+ + + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 505 QIGLVSQEPALFA-TTIKENILLGR-PDADL-----NEIEEAARVANAYSFIIKLPD-GF 556
+IGL++Q T++E + GR P L E EEA A + I L D
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 557 DTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF--MI 614
DT LSGGQ+QR IA + + AI+LLDE T+ LD + + E L
Sbjct: 142 DT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
Query: 615 GRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
G T + H L+ R A + L++G + G E++
Sbjct: 194 GYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 3e-15
Identities = 62/237 (26%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++ V Y +++ L+ SL + G+ + L+G++G+GK+T++ + TSG+
Sbjct: 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 487 VLLDGHDIKSLKL-RWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVAN 544
++ DG DI + + +R+ + +V + +F+ T++EN+ +G A+ ++ +E R+
Sbjct: 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKW 119
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD------ 598
Y +L + +++ G +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 120 VYELFPRL---HERRIQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Query: 599 --SESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIA 653
E+L ++ + F LV + ++ AD VL+ G V T D L+A
Sbjct: 176 IFDTIEQLREQGMTIF------LVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 21/217 (9%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL-RQ 504
L S V AG+ + LVG +G+GKST+++ + SG + G +++ L R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564
+ L Q+ FA + + L +PD E VA A + KL +
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRT--ELLNDVAGALALDDKLGRSTN------- 124
Query: 565 VQLSGGQKQRIAIARAMLK-----NPA--ILLLDEATSALDSESEKLVQEALDRF-MIGR 616
QLSGG+ QR+ +A +L+ NPA +LLLDE ++LD + + L G
Sbjct: 125 -QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 617 TTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
++ +H L+ T+R A +L++G + G +E++
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 5e-15
Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 25/247 (10%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY--DPTSG-QVLLDGHDIK----- 495
+ L+ L + G+ +AL+G SGSGKST++ + D ++G + L G ++
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 496 SLKLRWLRQQIGLVSQEPALF-ATTIKENILLG--------RPDADLNEIEEAARVANAY 546
+ +R R G + Q+ L ++ EN+L+G R E+ R A
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+ + G +R LSGGQ+QR+AIARA+++ ++L DE ++LD ES ++V
Sbjct: 138 TRV-----GMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 607 EALDRF--MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+ L G T +V H++ +R + + L+QG V G+ + + + +Y +
Sbjct: 193 DTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
Query: 664 IRMQEAA 670
R++E A
Sbjct: 253 NRVEENA 259
|
Length = 262 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L V + +R L S V AG+ + LVG +G+GKST+++ + P SG +
Sbjct: 1 MQLNDV--AVSTR-----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSI 52
Query: 488 LLDGHDIKSLKLRWL-RQQIGLVSQEPALFATTIKENILLGRPD-ADLNEIEEA-ARVAN 544
G +++ L R + L Q+ FA + + + L +PD + A VA
Sbjct: 53 QFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAE 112
Query: 545 AYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLK-----NPA--ILLLDEATSA 596
A KL R V QLSGG+ QR+ +A +L+ NPA +LLLDE ++
Sbjct: 113 ALGLDDKLG---------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS 163
Query: 597 LDSESEKLVQE-ALDRFM-----IGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHD 649
LD + Q+ ALDR + G ++ +H L+ T+R AD V +L+QG + G D
Sbjct: 164 LD-----VAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRD 218
Query: 650 E 650
E
Sbjct: 219 E 219
|
Length = 248 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 6e-15
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 48/242 (19%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSS----VIALVQRFYEPSSGRVMIDGKDIRKYN---LK 1155
++LR G+TL +VG SGCGKS+ +I LV + + G V GKD+ +
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV----KATDGEVAWLGKDLLGMKDDEWR 94
Query: 1156 SLRRHMAIVPQEPCLFAS-----TIYENIA-----YGHESATESEIIEAARLANADKFIS 1205
++R + ++ Q+P AS TI E IA Y H + E+ + R+ +
Sbjct: 95 AVRSDIQMIFQDP--LASLNPRMTIGEIIAEPLRTY-HPKLSRQEVKD--RVKAMMLKVG 149
Query: 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ---- 1261
LP+ + E SGGQ QR+ IARA + + ++++ DE SALD S+Q
Sbjct: 150 LLPNLINRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDV----SIQAQVV 201
Query: 1262 ---EALDRACSGKTTIVVAHRLSTIRNAHV---IAVIDDGKVAELGSHSHLLKNNPDGCY 1315
+ L R G + I +AH L+ ++ H+ + V+ G ELG+ + +NP Y
Sbjct: 202 NLLQQLQREM-GLSLIFIAHDLAVVK--HISDRVLVMYLGHAVELGT-YDEVYHNPLHPY 257
Query: 1316 AR 1317
+
Sbjct: 258 TK 259
|
Length = 331 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-15
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 41/205 (20%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E ++V Y + +DLS R G +A+VGP+G GKS+++ L+ P SG V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQE-----PCLFASTIYENIAYGHESATESEIIEAARL 1197
+K + Q P T+ E ++ G E E+ A L
Sbjct: 380 ------KVGETVK-----IGYFDQHRDELDPDK---TVLEELSEGFPDGDEQEV--RAYL 423
Query: 1198 ANADKFISSLPDGYKTFVGERGVQ----LSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
F GE + LSGG+K R+ +A+ ++ ++LLDE T+ LD
Sbjct: 424 GRFG------------FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
Query: 1254 AESERSVQEALDRACSGKTTIVVAH 1278
ES +++EAL G T ++V+H
Sbjct: 472 IESLEALEEALL-DFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 8e-15
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 34/223 (15%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK--DIRKYNL 1154
D P+ + L+L LVG +GCGKS++ + P G V+ GK D K L
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 1155 KSLRRHMAIVPQEP--CLFASTIYENIAYGHES--ATESEII----EAARLANADKFISS 1206
+LR+ +A V Q+P +F + I +IA+ + E+EI EA L +A F
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF--- 129
Query: 1207 LPDGYKTFVGERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265
+ +Q LS GQK+RVAIA A V +A +LLDE T+ LD + +
Sbjct: 130 ---------RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 1266 R-ACSGKTTIVVAHRLSTI----------RNAHVIAVIDDGKV 1297
R G I+ +H + I R ++ G+V
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
Length = 271 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-15
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498
R + + S T+ AG+ + + G +GSGK+T++ ++ P +G+VLL+G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA-ARVA-NAYSFIIKLPDGF 556
R + L ++ EN+ D ++EEA ARV N +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP------ 122
Query: 557 DTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
QLS GQ++R+A+AR +L + +LDE T+ALD EA+
Sbjct: 123 -------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 9e-15
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 18/209 (8%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++++ +DF Y +P +L S +PAG + L GS+G+GK+T++ LI +P G+
Sbjct: 1 MLDVIELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE 57
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLN-EIEEAARVAN 544
+L + IK + ++Q+ V + T++EN L + I E R+
Sbjct: 58 ILFERQSIKKDLCTY-QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLF- 115
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES-EK 603
+ +I P G LS GQK+++A+ R + + LLDE ALD S
Sbjct: 116 SLEHLIDYPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT 165
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKAD 632
++ + + G L+ +H+ + KAD
Sbjct: 166 IITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 42/241 (17%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI------------- 1149
++S+ G+ +A++G +G GK++ I + P +G + KD
Sbjct: 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL 84
Query: 1150 ----------RKY-NLKSLRRHMAIVPQ--EPCLFASTIYENIAYGHES-ATESEIIEAA 1195
+K +K +RR + +V Q E LF TI ++I +G S E EA
Sbjct: 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKE--EAK 142
Query: 1196 RLANADKFIS--SLPDGYKTFVGERG-VQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+ A K+I L + Y +R +LSGGQK+RVA+A + + ++ DE T+ L
Sbjct: 143 KRAA--KYIELVGLDESYL----QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 196
Query: 1253 DAESERSVQEALDRA-CSGKTTIVVAHRLSTI--RNAHVIAVIDDGKVAELGSHSHLLKN 1309
D + + + E D GKT I+V H L + I DGK+ + G +L +
Sbjct: 197 DPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI-FFKDGKIIKDGDTYDILSD 255
Query: 1310 N 1310
N
Sbjct: 256 N 256
|
Length = 305 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 51/229 (22%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
LK +DF+ AG+ AL+G +G GKS+++ ++ P SG + I
Sbjct: 27 LKGIDFTL----------------HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
Query: 1145 DGKDIRKYNLKSLRRH---MAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLA-- 1198
G L + H + +VPQEP LF + ++ ENI +G S LA
Sbjct: 71 GGN--PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1199 ----NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD- 1253
+ D SL V +R Q V I R +R + I++LDE T++L
Sbjct: 129 GCQLDLDSSAGSLE------VADR---------QIVEILRGLMRDSRILILDEPTASLTP 173
Query: 1254 AESER---SVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
AE+ER ++E L + G + ++H+L IR A I+V+ DG +A
Sbjct: 174 AETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-14
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 32/232 (13%)
Query: 440 RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT----SGQVLLDGHDIK 495
RP +L N S G+ +A++GSSG+GK+T+++ + F P SG VLL+G I
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPID 93
Query: 496 SLKLRWLRQQIGLVSQEPALFAT-TIKENIL------LGRPDAD------LNEIEEAARV 542
+ + +R V Q+ T T++E+++ + R ++E+ +A +
Sbjct: 94 A---KEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
+ I +P R +G LSGG+++R+A A +L +P +L DE TS LDS
Sbjct: 151 RKCANTRIGVPG------RVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202
Query: 603 KLVQEALDRF-MIGRTTLVIAHRLST--IRKADVVAVLQQGSVSEIGTHDEL 651
V + L G+T + H+ S+ D + ++ +G V+ +G+ D+
Sbjct: 203 YSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 15/202 (7%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
R +F LS AG+ L + GP+G GK++++ ++ P +GRV+++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1154 LKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYK 1212
S+ R + + P + + ++ EN+ + H ++ ++ EA LA
Sbjct: 69 -DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEA--LARVGL---------- 115
Query: 1213 TFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGK 1271
+R V QLS GQ++RVA+AR + + +LDE T+ALD EA+ C+
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1272 TTIVVAHRLSTIRNAHVIAVID 1293
+V+ + +D
Sbjct: 176 GMVVLTTHQDLGLSEAGARELD 197
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-14
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 49/219 (22%)
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH---DI-KSLKLRWLRQQI 506
LT+PA A+ G SG+GK+++++ I P G+++L+G D K + L +++I
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78
Query: 507 GLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565
G V Q+ LF ++ N+ G +A + FD V G+
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYG--------------MAK------SMVAQFDKIVALLGI 118
Query: 566 Q---------LSGGQKQRIAIARAMLKNPAILLLDEATSALD--------SESEKLVQEA 608
+ LSGG+KQR+AI RA+L P +LL+DE ++LD E+L +E
Sbjct: 119 EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE- 177
Query: 609 LDRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIG 646
I L ++H L I R AD V VL+QG V G
Sbjct: 178 -----INIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++ ++V+ Y D + LS + G+ L+GP+G GK++ + ++ P +G +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIA-----YGHESATESEII---- 1192
+ G+ + + R+ + +VPQ L T+ EN+ +G +A ++
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 1193 EAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E A+L N AD VGE LSGG K+R+ +ARA V ++++LDE T+
Sbjct: 124 EFAKLENKAD-----------AKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTG 168
Query: 1252 LDAESERSVQEALDR-ACSGKTTIVVAHRLSTI-RNAHVIAVIDDG-KVAELGSH 1303
LD ++ + E L GKT ++ H + R + VI++G K+AE H
Sbjct: 169 LDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH 223
|
Length = 306 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 26/211 (12%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK-SLRRHM 1161
D+S RAG+ AL+G +G GKS+++ ++ Y+P +G ++IDG+++R + +L +
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
Query: 1162 AIVPQE----PCLFASTIYENIAYGHESAT-----ESEIIEAARLANADKFISSLPDGYK 1212
AI+ QE P + T+ EN+ G + AR + PD
Sbjct: 82 AIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD--- 135
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA-ESER--SVQEALDRACS 1269
T + LS GQ+Q V IA+A R A ++ DE TS+L A E E+ V L RA
Sbjct: 136 TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL-RA-E 189
Query: 1270 GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAE 1299
G+ + V+HR+ I I V DG+
Sbjct: 190 GRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 12/202 (5%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS---SGRVMIDGKDIRKYNLK-SLR 1158
++SL+ RAG+ ++L G +G GKS+++ ++ Y P G ++ +G++++ N++ + R
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDTER 81
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
+AI+ QE L ++ ENI G+E + A A K ++ L
Sbjct: 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLDINPAT 139
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL--DRACSGKTTIV 1275
L GQ+Q V IA+A ++A +++LDE T++L ESE +V + D G I
Sbjct: 140 PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIACIY 198
Query: 1276 VAHRLSTIRN-AHVIAVIDDGK 1296
++H+L+ ++ + I VI DG+
Sbjct: 199 ISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-14
Identities = 75/289 (25%), Positives = 123/289 (42%), Gaps = 34/289 (11%)
Query: 367 AIATMFAVMIGGL--ALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSV 424
+A +++ L L A + A+VA KI ++ D
Sbjct: 263 NVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQ--AFPDW 320
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFS-----LTVPAGKTIALVGSSGSGKSTVVSLIERF 479
+EL++V F+Y N F LT+ G+ + L+G +GSGKST+ L+
Sbjct: 321 KT-LELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372
Query: 480 YDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTI--KENILLGRPDADLNEIE 537
Y P SG++LLDG + + +L R+ V + LF + + + L +E
Sbjct: 373 YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE 432
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
A + + L DG R ++LS GQK+R+A+ A+L+ IL+LDE +
Sbjct: 433 LAHKTS--------LNDG-----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479
Query: 598 DSESEK-LVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSVSE 644
D + Q L G+T I+H AD + ++ G +SE
Sbjct: 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 69/246 (28%), Positives = 120/246 (48%), Gaps = 35/246 (14%)
Query: 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
SV+ L++++ V F+ +R I +N SLTVP GK A++G SG GK+T++ LI P
Sbjct: 3 SVANLVDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP 59
Query: 483 TSGQVLLDGHDIKSL---KLRWLRQQIGLVSQEPALFA-TTIKENILLG-RPDADLNEIE 537
G++L DG +I ++ +L +R+++ ++ Q ALF + +N+ R L
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL 119
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGV------QLSGGQKQRIAIARAMLKNPAILLLD 591
+ V ++KL V RG +LSGG +R A+ARA+ P +++ D
Sbjct: 120 LHSTV------MMKL-----EAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168
Query: 592 EATSALDSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
E D + ++ + + +G T +V++H DV VL + I
Sbjct: 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSH--------DVPEVLSIADHAYIVADK 220
Query: 650 ELIAKG 655
+++A G
Sbjct: 221 KIVAHG 226
|
Length = 269 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
SR + +F LS AG+ L + GP+G GK++++ ++ P SG V +G + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1154 LKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE-SATESEIIEAARLANAD-KFISSLPDG 1210
R++ + P L + EN+ + IE A LA LP
Sbjct: 69 -DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDA-LAAVGLTGFEDLPAA 126
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
QLS GQ++R+A+AR ++ +A + +LDE T+ALD + L RA
Sbjct: 127 ----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL-RAHLA 175
Query: 1271 KTTIVVA 1277
+ IV+
Sbjct: 176 RGGIVLL 182
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD--------- 1148
+P+ R++SL AG+ + L GPSG GKS+++ + Y P G++++ +
Sbjct: 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83
Query: 1149 ------IRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA--NA 1200
+R+ + + + + ++P+ L + E + + A L N
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREVARAKAADLLTRLNL 141
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
+ + SL TF SGG++QRV IAR F+ I+LLDE T++LDA + V
Sbjct: 142 PERLWSLAPA--TF--------SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1261 QEALDRACSGKTTIV 1275
E + A + +V
Sbjct: 192 VELIREAKARGAALV 206
|
Length = 235 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 22/245 (8%)
Query: 426 GLIE-LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
GL L H F + + + + S +P G+ + +G++G+GKST + ++ PTS
Sbjct: 21 GLKGSLNH--FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS 78
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLV-SQEPAL-FATTIKENILLGRPDADLNEIEEAARV 542
G+V ++G D + +LR IGLV Q+ L + +++ + + ++ + E A R+
Sbjct: 79 GKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERL 137
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
F+ ++ D + ++ +LS GQ+ R +A A+L P +L LDE T LD
Sbjct: 138 D----FLTEILD-LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV--- 189
Query: 603 KLVQEALDRFMI------GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655
Q + F+ T L+ H I D V ++ QG + GT +L +
Sbjct: 190 -NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
Query: 656 ENGVY 660
Sbjct: 249 GPYKE 253
|
Length = 325 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK---DI-RKYNLKSLR 1158
+L+L A+ G T A+ G SG GK+S+I + P GR++++G+ D + L +
Sbjct: 18 NLTLPAQ-GIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
R + V Q+ LF + N+ YG + ++ + L + + P
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--------- 126
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIV- 1275
LSGG+KQRVAI RA + E++L+DE ++LD +R + L+R A I+
Sbjct: 127 --GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184
Query: 1276 VAHRLSTI-RNAHVIAVIDDGKVAELGS 1302
V+H L I R A + V++ GKV G
Sbjct: 185 VSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL----DGHDIKSLKLR 500
+L N SL+V AG+ + L G SGSGKST++ + Y P GQ+L+ + D+ + + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 501 WL----RQQIGLVSQEPALFATTIKENILL---GRPDADLNEIEEAARVANAYSFIIKLP 553
+ R IG VSQ F I L P E AR A A + +L
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAEPLLARGVPREVAR-AKAADLLTRL- 139
Query: 554 DGFDTQVRERGVQL-----SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA 608
+ ER L SGG++QR+ IAR + + ILLLDE T++LD+ + +V E
Sbjct: 140 -----NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 609 LD 610
+
Sbjct: 195 IR 196
|
Length = 235 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
++SL L+GP+G GKS+++ ++ P+SG ++ DG + K L +
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG---HPWTRKDLHK 71
Query: 1160 HMAIVPQEPCLFAS-TIYEN--IAYGHESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
+++ + P L+ + T EN + +S I E + + L + K
Sbjct: 72 IGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD-------LTNTGKKKAK 123
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-GKTTIV 1275
Q S G KQR+ IA A + ++++LDE T+ LD + ++E + G T I+
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 1276 VAHRLSTIRN-AHVIAVIDDGKV 1297
+H LS ++ A I +I +G +
Sbjct: 180 SSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 52/198 (26%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IEL+++ + P +L + S + G + + G SG+GKS++ + + SG++
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
+ + + + Q P L T++E ++ P D
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPLGTLREQLI--YPWDD--------------- 90
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
LSGG++QR+A AR +L P + LDEATSALD ESE + +
Sbjct: 91 ------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 608 ALDRFMIGRTTLV-IAHR 624
L I T++ + HR
Sbjct: 133 LLKELGI---TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK--- 495
R E + ++ S T+ AG+ + + G +G+GK+T++ ++ P +G+V G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 496 ---SLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKL 552
L +L Q G+ + L T EN+ + + AA + A + + L
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQ---RFHGSGNAATIWEALA-QVGL 120
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
D V QLS GQ++R+A+AR L + +LDE +ALD E
Sbjct: 121 AGLEDLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV-------ALL 169
Query: 613 MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAH 671
T L+ AH QG + + TH L A++ R+ A
Sbjct: 170 ----TALMAAH-------------AAQGGIVLLTTHQPLPIAS-----AQIRRLDLTAT 206
|
Length = 209 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 39/228 (17%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA- 1162
LS RAG+ L LVGP+G GKS+++A + P SG + G+ + ++ L RH A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1163 IVPQEPCLFASTIYENIA-YGHESATESEIIE-----AARLANADKFISSLPDGYKTFVG 1216
+ Q+ FA +++ + + + + A L DK S+
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN-------- 125
Query: 1217 ERGVQLSGGQKQRVAIARAFVR-------KAEIMLLDEATSALD-AESERSVQEALDR-- 1266
QLSGG+ QRV +A ++ +++LLDE ++LD A+ Q ALDR
Sbjct: 126 ----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ-----QAALDRLL 176
Query: 1267 ---ACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKNN 1310
G ++ +H L+ T+R+A + ++ GK+ G +L
Sbjct: 177 SELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 5e-14
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 50/244 (20%)
Query: 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS 496
R + + S V AG+ + + G +G+G+S +V I P SG++LL+G D+
Sbjct: 266 KDRRGVTA-VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 497 ----LKLRWL--------RQQIGLVSQEPALFATTIKENILLGRPDA---------DLNE 535
+ R L R GLV ++ EN++LGR D D
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRA 378
Query: 536 IEEAARVANAYSFIIK----LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
I + AR +I+ D R LSGG +Q++ +AR + + P +L+
Sbjct: 379 IRKFARE------LIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAA 428
Query: 592 EATSALDSESEKLVQEAL----DRFMIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIG 646
+ T LD + + + E L D G+ L+I+ L I +D +AV+ +G + I
Sbjct: 429 QPTRGLDVGAIEFIHERLLELRDA---GKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
Query: 647 THDE 650
+E
Sbjct: 486 PPEE 489
|
Length = 501 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498
SR E + S T+ AG+ + + G +G GK+T++ ++ P SG+V +G + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 499 LRWLRQQIGLVSQEPALFAT-TIKENILLGRPD---ADLNEIEEAARVANAYSFIIKLPD 554
+ I + P L + EN+ A IE+A L
Sbjct: 69 DEP-HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-IEDALAAVG-------LTG 119
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALD 610
D QLS GQ++R+A+AR L + +LDE T+ALD L+ L
Sbjct: 120 FEDLPAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 7e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 35/236 (14%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L V SY D + LS +G+ L+GP+G GKS++ ++ P +G++
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCL-FASTIYEN-IAYGHE---SATESE-----II 1192
+ G + + R + +VPQ L T+ EN + +G S E E ++
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 1193 EAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E ARL + AD +S LSGG K+R+ +ARA + ++++LDE T+
Sbjct: 158 EFARLESKADARVS---------------DLSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 1252 LDAESERSVQEALDRA--CSGKTTIVVAHRLSTI-RNAHVIAVIDDG-KVAELGSH 1303
LD + + E L R+ GKT ++ H + R + V++ G K+AE H
Sbjct: 203 LDPHARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
Length = 340 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-14
Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 23/240 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L++LK +D ++P V+ L+ +L V G+ +ALVG +G+GKST++ ++ Y +G
Sbjct: 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS 60
Query: 487 VLLDGHDIKSLKLRWLRQQ-IGLVSQEPALFAT-TIKENILLGR-PDADLNEIEEAARVA 543
+L G ++ + ++ IG++ QE L TI ENI LGR I+ A
Sbjct: 61 ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA 120
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESE 602
A + +L + +LS G++Q + IA+ + ++++DE T AL D+E+E
Sbjct: 121 EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE 178
Query: 603 KL---VQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQG------SVSEIGTHDELI 652
L ++E + GR + I+HRL I + D V V + G V+++ T D LI
Sbjct: 179 SLFRVIRELKSQ---GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL-TEDSLI 234
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 53/218 (24%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSSGRVMIDGKDIRKYN 1153
I + ++L + G+ AL+GP+G GKS+ I + YE + G ++ G+DI
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDI---- 66
Query: 1154 LKSL------RRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSL 1207
L R + + Q P I + A+ F+ +
Sbjct: 67 -TDLPPEERARLGIFLAFQYP---------------------PEIPGVKNAD---FLRYV 101
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR- 1266
+G SGG+K+R I + + + ++ +LDE S LD ++ R V E +++
Sbjct: 102 NEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL 150
Query: 1267 ACSGKTTIVVAH--RLSTIRNAHVIAVIDDGKVAELGS 1302
GK+ +++ H RL + V+ DG++ + G
Sbjct: 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 38/216 (17%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L + S TVP G ALVG +GSGKST+ + F SG++ + G + + L++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 506 -IGLVSQEPAL---FATTIKENILLGR---------PDADLNEIEEAA--RVANAYSFII 550
+ V Q + F +++ +++GR +I AA RV
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-------- 130
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE----KLVQ 606
D + + R+ G +LSGGQK+R+ +ARA+ + ++LLDE + +D ++E L++
Sbjct: 131 ---DMVEFRHRQIG-ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 607 EALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
E D G+T LV H L ++ + V+ +G+V
Sbjct: 187 ELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTV 219
|
Length = 272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-13
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 56/230 (24%)
Query: 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
+ V P P+ IL + SL+ G I ++G +G+GKST++ ++ +G+
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLG-------------------RP 529
IK +G + QEP L T T++EN+ G P
Sbjct: 65 AP-GIK----------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEP 113
Query: 530 DADLNE-IEEAARV------ANAYSF---------IIKLPDGFDTQVRERGVQLSGGQKQ 573
DAD++ + E A + A+A+ ++ P D V + LSGG+++
Sbjct: 114 DADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGERR 168
Query: 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
R+A+ R +L P +LLLDE T+ LD+ES +++ L + T + + H
Sbjct: 169 RVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 47/206 (22%)
Query: 438 PSRPEVRILNNFSLTVPAGKTIALVGSSGSGKST----VVSLIERFYDPTSGQVLLDGHD 493
R ++ IL +FS V G+ + ++G GSG ST + + E G + +G
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV-EGDIHYNGIP 73
Query: 494 IKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKL 552
K ++ + I VS+E F T T++E + + A F+
Sbjct: 74 YKEFAEKYPGEII-YVSEEDVHFPTLTVRETL-------------DFALRCKGNEFV--- 116
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
RG+ SGG+++R++IA A++ ++L D +T LDS + AL+
Sbjct: 117 ----------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEIL 158
Query: 613 MIGRTTLVIAHRLSTIRKADVVAVLQ 638
RT +A L + V++ Q
Sbjct: 159 KCIRT---MADVL---KTTTFVSLYQ 178
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159
+ L L AG+ +A+VG SGCGKS+++ L+ PS+G ++ L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEARE 81
Query: 1160 HMAIVPQEPCLFA-STIYENIAYG---HESATESEIIEAARLANADKFISSLPDGYKTFV 1215
++ Q+ L + +N+ G + + A LA+
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR--------------A 127
Query: 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTT 1273
E LSGGQKQRVA+ARA + + ++LLDE ALDA + +Q+ ++ G T
Sbjct: 128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187
Query: 1274 IVVAHRLS-TIRNAHVIAVIDDGKV 1297
++V H +S + A + +I++GK+
Sbjct: 188 LLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 37/228 (16%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI---RKYNLKSLRRHMAIVPQE 1167
G+TL+LVG SG GKS+ + R E G ++ +G+ I L++LRR + + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1168 PCLFAS---------TIYE-----NIAYGHESATESEIIEAARLANADKFISSLPDGYKT 1213
P +AS +I E + G +A AR+A + + LP+
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGKAAA--------ARVAWLLERVGLLPEHAWR 459
Query: 1214 FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS--VQEALD-RACSG 1270
+ E SGGQ+QR+ IARA ++++ DEA SALD S R + LD + G
Sbjct: 460 YPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDV-SIRGQIINLLLDLQRDFG 514
Query: 1271 KTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ ++H ++ + R +H +AV+ G++ E+G + + NP Y R
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE-NPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-13
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG 1146
+DF Y D P+ + +S AG L L G +G GK++++ L+ P G ++ +
Sbjct: 6 ELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 1147 KDIRKYNLKSLRRHMAIVPQE----PCLFASTIYENIAYG-HESATESEIIEAARLANAD 1201
+ I+K +L + ++ + V P L T+ EN Y H S I E RL + +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLE 118
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
I P G LS GQK++VA+ R ++ KA++ LLDE ALD E S+
Sbjct: 119 HLI-DYPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLL 164
|
Length = 200 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-13
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Query: 1095 RPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154
+ I R+LS + G+TLA+VG SG GKS + R E + G V D +R+ +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 1155 K----------SLRR----HMAIVPQEPCLFAS---TIYENIAYG---HESAT-ESEIIE 1193
+ +R MA++ QEP + T+ E IA H+ A+ E ++E
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
A R+ + + +P+ +T + QLSGG +QRV IA A + +++ DE T+ALD
Sbjct: 146 AKRMLDQVR----IPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
|
Length = 623 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-13
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 25/235 (10%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVI----ALVQRFYEPSS-----GR-VMIDGK---DIR 1150
+ L G+ +AL+GPSG GKS+++ L+ S GR V +G+ DIR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 1151 KYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESAT---ESEIIEAARLANADKFISS 1206
K R + + Q+ L ++ EN+ G +T + R +
Sbjct: 83 KS-----RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD- 1265
G F +R LSGGQ+QRVAIARA +++A+++L DE ++LD ES R V + L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 1266 -RACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
G T +V H++ +R I + G V GS D Y +
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSI 252
|
Length = 262 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 435 FSYPSRPEVRILNNFSLTVPAG-----KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
++YP+ + L F+L V G + I ++G +G GK+T + ++ P G + +
Sbjct: 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58
Query: 490 DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFI 549
+ + S K Q I A + T+++ +L +A
Sbjct: 59 ELDTV-SYK----PQYI------KADYEGTVRD-LLSSITKDFYTHPYFKTEIAKP---- 102
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
+++ D +V E LSGG+ QR+AIA + K+ I LLDE ++ LD E + + +
Sbjct: 103 LQIEQILDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158
Query: 610 DRFMIG--RTTLVIAH 623
RF +T V+ H
Sbjct: 159 RRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 3e-13
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 1106 LRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVP 1165
L A G+ L L+GP+G GK++++ + P+ G V + G K RH+ VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1166 QEPCL---FASTIYENIAYGHESATESEIIEAARLANADKFIS---SLPDGYKTFVGERG 1219
Q F ++ + G + I R F + +L T + +R
Sbjct: 56 QRHEFAWDFPISVAHTVMSG-----RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP 110
Query: 1220 V-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVA 1277
V +LSGGQ+QRV +ARA + ++LLDE + LD ++ + E A +G ++
Sbjct: 111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
Query: 1278 HRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNP 1311
H L+ V+ +G+V G+ L P
Sbjct: 171 HDLAQAMATCDRVVLLNGRVIADGTPQQLQDPAP 204
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 30/242 (12%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI----RKYNLKSL 1157
D++ GK A+VG +G GKS++I + +P++G V +D I + ++ +
Sbjct: 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83
Query: 1158 RRHMAIVPQ--EPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215
R+ + +V Q E LF T+ I +G ++ + ++ + A + + L G+ V
Sbjct: 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVK-NYAHRLLMDL--GFSRDV 138
Query: 1216 GERG-VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACSGKT 1272
+ Q+SGGQ +++AI +I++LDE T+ LD +S+R V L KT
Sbjct: 139 MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKT 198
Query: 1273 TIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNN----------PDGCYARMIQL 1321
I+V+H ++ + R A + V+ +G + S L K+ P+ ++QL
Sbjct: 199 IILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLPE-----IVQL 253
Query: 1322 QR 1323
Q
Sbjct: 254 QY 255
|
Length = 286 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-13
Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 53/248 (21%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIAL-VQRFYEPS------SGRVMIDGKDIRKYNLK 1155
D+SL+ AG+TLALVG SG GKS V AL + R PS SG + G+ + + +
Sbjct: 27 DVSLQIEAGETLALVGESGSGKS-VTALSILRLL-PSPPVVYPSGDIRFHGESLLHASEQ 84
Query: 1156 SLRR----HMAIVPQEPCL-------FASTIYENIA----YGHESATESEII---EAARL 1197
+LR +A++ QEP + +YE ++ E+A EI+ + +
Sbjct: 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAA-RGEILNCLDRVGI 143
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A K ++ P QLSGG++QRV IA A + + E+++ DE T+ALD +
Sbjct: 144 RQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQ 192
Query: 1258 -------RSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
R +Q+ L+ + + H LS +R A +AV+ +G+ E + L +
Sbjct: 193 AQILQLLRELQQELNMG-----LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF-S 246
Query: 1310 NPDGCYAR 1317
P Y +
Sbjct: 247 APTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 4e-13
Identities = 71/279 (25%), Positives = 119/279 (42%), Gaps = 31/279 (11%)
Query: 381 LAQAAPSISAFAKAKVAAAKI----FRIIDHKPSI---DRNSESGLELDSVSGLIELKHV 433
L ++ A+A++A ++ R + +P + D ++ L D IELK V
Sbjct: 284 LEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV 343
Query: 434 DFSYPS--RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG 491
+ + E L L + G + +VG +G GKST+ L Y P G++LLDG
Sbjct: 344 HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403
Query: 492 HDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK 551
+ + R + + LF + L+G PD E A + NA ++ +
Sbjct: 404 AAVSADSRDDYRDLFSAIFADFHLF------DDLIG-PDE-----GEHASLDNAQQYLQR 451
Query: 552 LPDGFDTQVRERG------VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
L +V+ LS GQ++R+A+ A L++ ILL DE + D ++
Sbjct: 452 L--EIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFF 509
Query: 606 QEAL--DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642
E L D G+T ++I+H AD + L G +
Sbjct: 510 YEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-13
Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 39/241 (16%)
Query: 440 RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV------------ 487
+ ++ + N S ++ G+T+A+VG SGSGKS + R + G V
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 488 -LLDGHDIKSLKLRWLR-QQIGLVSQEP-----ALFAT--TIKENILLGRPDADLNEIEE 538
+++ + + ++R +R + ++ QEP +F I E+I L + + + E
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A R+ + +++P+ T + QLSGG +QR+ IA A+ PA+L+ DE T+ALD
Sbjct: 146 AKRMLDQ----VRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 599 SESE-------KLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
+ K++Q+ + +I I H + + + AD V V+ QG E G+ ++
Sbjct: 201 VTIQAQILQLIKVLQKEMSMGVI-----FITHDMGVVAEIADRVLVMYQGEAVETGSVEQ 255
Query: 651 L 651
+
Sbjct: 256 I 256
|
Length = 623 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-13
Identities = 55/234 (23%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 417 SGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI 476
LE++ V+ K ++N S VP G+ L+G +G+GK+T +I
Sbjct: 1 MALEIEGVTKSFGDKKA------------VDNISFEVPPGEIFGLLGPNGAGKTTTFRMI 48
Query: 477 ERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPD 530
+PT G++ +G + + ++ +IG + +E L+ T+++ + L G P
Sbjct: 49 LGLLEPTEGEITWNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK 104
Query: 531 ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
A E + A+ +++ +++E LS G +Q+I A++ P +L+L
Sbjct: 105 A------EIQKKLQAWLERLEIVGKKTKKIKE----LSKGNQQKIQFISAVIHEPELLIL 154
Query: 591 DEATSALDSESEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642
DE S LD + +L+++A+ G T + +HR+ + + D + +L++G
Sbjct: 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208
|
Length = 300 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 21/239 (8%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L V SY D + DLS G+ L+GP+G GKS++ ++ P G++
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCL-FASTIYENI-AYGHESATESEIIEAARLANA 1200
+ G+ + + R + +VPQ L T+ EN+ +G + IEA
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV----- 115
Query: 1201 DKFISSLPD--GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
I SL + ++ R LSGG K+R+ +ARA + ++++LDE T+ LD +
Sbjct: 116 ---IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1259 SVQEALDRACS-GKTTIVVAHRLSTI-RNAHVIAVIDDG-KVAELGSHSHLLKNNPDGC 1314
+ E L + GKT ++ H + R + V++ G K+AE H L + GC
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE--GRPHALIDEQIGC 229
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 8e-13
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%)
Query: 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVS 510
L+ G+ + L+G +G+GK+T++ I P G V + G + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55
Query: 511 QEPAL---FATTIKENILLGRPD----------ADLNEIEEAARVANAYSFIIKLPDGFD 557
Q F ++ ++ GR AD + +A R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL------------ 103
Query: 558 TQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IG 615
T++ +R V +LSGGQ+QR+ +ARA+ P++LLLDE + LD +++L+ E G
Sbjct: 104 TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAG 163
Query: 616 RTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDEL 651
L+ H L+ VL G V GT +L
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 16/161 (9%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LR 1158
+ D+SL +G+ + L+GP+G GK++ +V +G ++ID +DI L + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKF-----ISSLPDGYK 1212
R + +PQE +F ++Y+N+ + ++ R A++ I L D
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQ--IRDDLSAEQREDRANELMEEFHIEHLRDSM- 134
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
G LSGG+++RV IARA + +LLDE + +D
Sbjct: 135 ------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 28/197 (14%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160
RD S G ALVG +G GKS++ + F +SG++ I G+ R+ K+L
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL--- 79
Query: 1161 MAIVPQE-------PCLFASTIYENIAYGH------ESATESEIIEAARLANADKFISSL 1207
+A VPQ P L + YGH + +I+ AA LA D +
Sbjct: 80 VAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRDRQIVTAA-LARVD-----M 132
Query: 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL-DR 1266
+ +GE LSGGQK+RV +ARA ++ +++LLDE + +D ++E + L +
Sbjct: 133 VEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188
Query: 1267 ACSGKTTIVVAHRLSTI 1283
GKT +V H L ++
Sbjct: 189 RDEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 49/264 (18%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSSGR 1141
L+ D I + ++L + G+ A++GP+G GKS+ I + YE + G
Sbjct: 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGE 62
Query: 1142 VMIDGKDIRKYNLKSL------RRHMAIVPQEPC--------LFASTIYENIAYGHESAT 1187
++ DG+DI L R + + Q P F
Sbjct: 63 ILFDGEDI-----LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILP 117
Query: 1188 E--SEIIEAARLANADKFISSLPDGYKTFVGERGVQ--LSGGQKQRVAIARAFVRKAEIM 1243
E E+ E A L D+ ER V SGG+K+R I + + + ++
Sbjct: 118 EFIKELKEKAELLGLDEEFL-----------ERYVNEGFSGGEKKRNEILQLLLLEPKLA 166
Query: 1244 LLDEATSALDAESERSVQEALDR-ACSGKTTIVVAHR-----LSTIRNAHVIAVIDDGKV 1297
+LDE S LD ++ + V E ++ G+ +++ H HV+ DG++
Sbjct: 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY---DGRI 223
Query: 1298 AELG--SHSHLLKNNPDGCYARMI 1319
+ G + L+ ++
Sbjct: 224 VKSGDPELAEELEEKGYDWLKEVV 247
|
Length = 251 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 20/193 (10%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS--- 1156
+ ++S G+ +A+VG SG GKS+++ L+ P+SG V+ +G+ + K + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1157 LR-RHMAIVPQEPCLFAS-TIYENIAY----GHESATESEIIEAARLANADKFISSLPDG 1210
LR + + + Q L T EN+A G + E LA G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV---------G 134
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--AC 1268
+ R +LSGG++QRVAIARA V ++L DE T LDA + S+ + L
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 1269 SGKTTIVVAHRLS 1281
G +VV H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 45/297 (15%)
Query: 366 LAIATMFAVMIGGL--ALAQAAPSISAFAKAKVAAAKI--FRIIDHKPSIDR-NSESGLE 420
+A +++ + L L A ++ A+VA K+ + +K R + +
Sbjct: 262 TNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQ 321
Query: 421 LDSVSGLIELKHVDFSYPSRPEVRILNNFS-----LTVPAGKTIALVGSSGSGKSTVVSL 475
+EL++V F+Y N FS LT+ G+ + L+G +GSGKST+ L
Sbjct: 322 T------LELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368
Query: 476 IERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNE 535
+ Y P SG++LLDG + + + R+ V + LF LLG +
Sbjct: 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ------LLG----PEGK 418
Query: 536 IEEAARVANAYSFI-----IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
A V + ++L DG R ++LS GQK+R+A+ A+ + ILLL
Sbjct: 419 PANPALVEKWLERLKMAHKLELEDG-----RISNLKLSKGQKKRLALLLALAEERDILLL 473
Query: 591 DEATSALDSESEKLV-QEALDRFMI-GRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645
DE + D + Q L G+T I+H AD + ++ G +SE+
Sbjct: 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
|
Length = 547 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE----RFYDP 482
I L + SY RP IL+N S V G+ +VG +G+GKST++SLI + Y
Sbjct: 260 RIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY-- 314
Query: 483 TSGQVLLDGHDIKSLKLRW-LRQQIGLVSQEPAL---FATTIKENILLGRPDAD--LNEI 536
S + L G S + W +++ IG VS L +T+++ IL G D+ +
Sbjct: 315 -SNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAV 373
Query: 537 EEAARV-ANAYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIA-IARAMLKNPAILLLDEA 593
+ + A + I+ G D + + LS GQ QR+A I RA++K+P +L+LDE
Sbjct: 374 SDRQQKLAQQWLDIL----GIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPTLLILDEP 428
Query: 594 TSALDSESEKLVQEALDRFMI--GRTTLV------------IAHRLSTI 628
LD + +LV+ +D +I G T L+ I HRL +
Sbjct: 429 LQGLDPLNRQLVRRFVD-VLISEGETQLLFVSHHAEDAPACITHRLEFV 476
|
Length = 490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 64/305 (20%), Positives = 125/305 (40%), Gaps = 44/305 (14%)
Query: 366 LAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVS 425
IA V+ G + P+ + ++ ++ + R ++ G + V
Sbjct: 209 FEIADRITVLRDG-RVVGTRPTAAETSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVR 267
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
L S + + S TV AG+ + + G G+G++ + + +SG
Sbjct: 268 NL-----------SGGGK--VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314
Query: 486 QVLLDGHDIKSLKLR-WLRQQIGLVS---QEPALFAT-TIKENILLGRPDAD-----LNE 535
++LLDG ++ R ++ I V + L +I ENI L ++
Sbjct: 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374
Query: 536 IEEAARVANAYSFI----IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
+E A +I IK P + + LSGG +Q++ +AR + +P +L+LD
Sbjct: 375 RKERALAE---RYIRRLRIKTPS-PEQPIGT----LSGGNQQKVVLARWLATDPKVLILD 426
Query: 592 EATSALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646
E T +D +E +L++E G+ L+I+ L + +D + V+++G +
Sbjct: 427 EPTRGIDVGAKAEIYRLIRELAAE---GKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 647 THDEL 651
+E
Sbjct: 484 DREEA 488
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 23/234 (9%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
GEV L+ D S R + +D+S RAG+ + + G +G G+S ++ + +P+SG
Sbjct: 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG 313
Query: 1141 RVMIDGKDIR-KYNLKSLRRH-MAIVPQEP----CLFASTIYENIAYGHESATE------ 1188
R++++GKD+ + + + RR +A VP++ + ++ EN+ G
Sbjct: 314 RILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGF 373
Query: 1189 ---SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
I + AR ++F D LSGG +Q++ +AR R+ ++++
Sbjct: 374 LDRRAIRKFAREL-IEEF-----DVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIA 427
Query: 1246 DEATSALDAESERSVQEAL-DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297
+ T LD + + E L + +GK ++++ L I + IAVI +G++
Sbjct: 428 AQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-12
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI--KS 496
S P V+ L+N +L V AL+G +G+GKST++ + Y SG +L G +I KS
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 497 LKLRWLRQQIGLVSQEPALF-ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDG 555
K L I +V QE L ++ +N+ LGR +++ Y + D
Sbjct: 67 SK-EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQ----DKMYRDTKAIFDE 121
Query: 556 FDTQV--RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE-----KLVQEA 608
D + R + LS Q Q I IA+A N I+++DE TS+L +E E ++++
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKL 180
Query: 609 LDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQG 640
+R G + I+H++ I + D + +L+ G
Sbjct: 181 KER---GCGIVYISHKMEEIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+ + + Y R + S + G+ + +VG SGSGK+T++ I P +G
Sbjct: 6 LLSVSGLSKLYGPGKGCR---DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 487 VLLDGHDIKSLKL---------RWLRQQIGLVSQEPA---LFATTIKENI---LLGRPDA 531
V D + L R LR + G V Q P + NI L+
Sbjct: 63 VTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR 122
Query: 532 DLNEIEEAA-----RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586
I A V I LP F SGG +QR+ IAR ++ P
Sbjct: 123 HYGNIRAEAQDWLEEVEIDLDRIDDLPRTF-----------SGGMQQRLQIARNLVTRPR 171
Query: 587 ILLLDEATSALDSESEK--------LVQEALDRFMIGRTTLVIAHRLSTIR-KADVVAVL 637
++ +DE T LD + LV+E +G +++ H L+ R AD + V+
Sbjct: 172 LVFMDEPTGGLDVSVQARLLDLLRGLVRE------LGLAVVIVTHDLAVARLLADRLMVM 225
Query: 638 QQGSVSEIGTHDELI 652
+QG V E G D ++
Sbjct: 226 KQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 34/229 (14%)
Query: 447 NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL------- 499
+ S + G+ + +VG SGSGKST++ + P G L+L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 500 --RWLRQQIGLVSQEPA---LFATTIKENI---LLGRPDADLNEIEEAA-----RVANAY 546
R +R + G V Q P + NI L+ I A V
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP 139
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+ I LP F SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 140 TRIDDLPRAF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
Query: 607 EALDRFM--IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELI 652
+ L + +G +++ H L R A + V+QQG V E G D+++
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
SR + P+F L AG+ L + G +G GK++++ ++ SG++ IDGK + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1154 LKSLRRHMAIVPQEPCLFA--STIYENIAYGHESATESEIIEAARLANADKFISSLPDGY 1211
R MA + P L A ST+ EN+ + A ++ + I L
Sbjct: 80 RS---RFMAYLGHLPGLKADLSTL-ENLHF----LCGLHGRRAKQMPGSALAIVGLAGYE 131
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
T V QLS GQK+R+A+AR ++ A + LLDE + LD E
Sbjct: 132 DTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 7e-12
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 31/167 (18%)
Query: 1093 PSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSSGRVMIDGKDI 1149
R IPI +D S + G+ + ++G G G S+ +A G + +G
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209
K + + V +E F + T E ++ A ++F+
Sbjct: 75 -KEFAEKYPGEIIYVSEEDVHFPTL------------TVRETLDFALRCKGNEFV----- 116
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
RG+ SGG+++RV+IA A V +A ++ D +T LD+ +
Sbjct: 117 --------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 8e-12
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 54/194 (27%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ-VLLDGHDIKSLKLRWLR 503
IL + SL+ G I ++G +G+GKST++ ++ G+ G
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI----------- 70
Query: 504 QQIGLVSQEPALFAT-TIKENI-------------------LLGRPDADLNE-IEEAARV 542
++G + QEP L T++EN+ PDAD + E +
Sbjct: 71 -KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGEL 129
Query: 543 ------ANAY---SFI------IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587
A+A+ S + ++ P D +V +LSGG+++R+A+ R +L+ P +
Sbjct: 130 QEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGERRRVALCRLLLEKPDM 184
Query: 588 LLLDEATSALDSES 601
LLLDE T+ LD+ES
Sbjct: 185 LLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 9e-12
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 2/58 (3%)
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD ES + ++EAL + T ++++H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 27/206 (13%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L+ S G+ + +G +G+GKST + +I + P SG V + G D+ +++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRN 76
Query: 506 IG-LVSQEPALFATTIKENI-----LLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
IG L P ++E + + G L + RV +I+L G +
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEE----MIELV-GLRPE 126
Query: 560 VRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS----ESEKLVQE-ALDRFMI 614
++ QLS G +QR+ +A+A++ +P +L+LDE T+ LD E +++ D+ +I
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 615 GRTTLV-----IAHRLSTIRKADVVA 635
T ++ I R+ I K +VA
Sbjct: 187 LSTHIMQEVEAICDRVIIINKGKIVA 212
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 25/191 (13%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
++S G+ L+GP+G GK++ ++ EP+ G + +G + + ++ +
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74
Query: 1162 AIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADK--FISSLPDGYKTF--VG 1216
+P+E L+ T+ + + Y A L K L + VG
Sbjct: 75 GYLPEERGLYPKMTVEDQLKY------------LAELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 1217 ERG---VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKT 1272
++ +LS G +Q++ A + + E+++LDE S LD + +++A + G T
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 1273 TIVVAHRLSTI 1283
I +HR+ +
Sbjct: 183 IIFSSHRMEHV 193
|
Length = 300 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-11
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE-RFYDPT-SGQVLLDGHDIKSLKL 499
E ILN + G+ +A++G SGSGKST+++ + R +G +L + L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 500 RWLRQQIGLVSQEPALFA-TTIKENIL---LGRPDADLNEIEEAARVANAYSFIIKLPDG 555
+ + G V+Q+ L+ T++E ++ L R L + +E VA + + L
Sbjct: 140 K----RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK-QEKILVAESVISELGLTKC 194
Query: 556 FDTQVRE---RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE-KLVQEALDR 611
+T + RG+ SGG+++R++IA ML NP++L+LDE TS LD+ + +LV
Sbjct: 195 ENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
Query: 612 FMIGRTTLVIAHRLST--IRKADVVAVLQQG 640
G+T + H+ S+ + D V VL +G
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 1e-11
Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 61/190 (32%)
Query: 456 GKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL-LDGHDIKSLKLRWLRQQIGLVSQEPA 514
G+ I +VG GSGK+T+ + R P G V+ +DG DI L L I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 515 LFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQR 574
V + SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-------GRTTLVIAHRLST 627
+A+A A P +L+LDE TS LD+E E L+ + ++ T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 628 IRKADVVAVL 637
+ A +
Sbjct: 129 LGPALLRRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 435 FSYPSRPEVRILNNFSLTVPAGK-----TIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
YP + +F L V G+ I ++G +G GK+T V L+ P G
Sbjct: 343 VEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE- 399
Query: 490 DGHDIK-SLKLRWLR-QQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY- 546
D+K S K +++ G V L + I+ + ++Y
Sbjct: 400 ---DLKVSYKPQYISPDYDGTVED---LLRSAIR------------------SAFGSSYF 435
Query: 547 -SFIIK---LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
+ I+K L D + V E LSGG+ QR+AIA A+ + + LLDE ++ LD E
Sbjct: 436 KTEIVKPLNLEDLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491
Query: 603 KLVQEALDRFMIGR--TTLVIAHRLSTI 628
+V + + RF+ T LV+ H + I
Sbjct: 492 IIVAKVIRRFIENNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 32/198 (16%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK-- 1155
+ I + L + G+T+AL+G SG GKS+++A++ + SSG V + G+ + + + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82
Query: 1156 -SLR-RHMAIVPQE----PCLFASTIYENIAYGH----ESATESEIIEAARLANA--DKF 1203
LR +H+ V Q P L A EN+ ES+ +S A L K
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNA---LENVELPALLRGESSRQSRNGAKALLEQLGLGKR 139
Query: 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE- 1262
+ LP QLSGG++QRVA+ARAF + +++ DE T LD ++ + +
Sbjct: 140 LDHLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 1263 --ALDRACSGKTTIVVAH 1278
+L+R G T I+V H
Sbjct: 189 LFSLNRE-HGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-11
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS--GRVMIDGKDIRKYNLKSL-RRH 1160
+ L R G+ + L G +G GKS+++ ++ Y + G + G ++ N++ R
Sbjct: 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79
Query: 1161 MAIVPQEPCLFAS-TIYENIAYGHESATESEIIE-AARLANADKFIS--SLPDGYKTFVG 1216
+ I+ QE L ++ ENI G+E + A A + L T
Sbjct: 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT--- 136
Query: 1217 ERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DAESERSVQEALDRACSGKTTI 1274
R V GGQ+Q V IA+A ++A +++LDE +S+L + E+E + D G +
Sbjct: 137 -RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 1275 VVAHRLSTIRN-AHVIAVIDDGK 1296
++H+L+ ++ I VI DG+
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 31/224 (13%)
Query: 1089 DFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148
++ + +S G+ + +GP+G GK++ + ++ +P+SG V + G
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 1149 IRKYNLKSLRRHMAIV------------PQEPCLFASTIYENIAYGHESATESEIIEAAR 1196
K K LRR + +V + + IY ++ E+ E
Sbjct: 85 PWKRRKKFLRR-IGVVFGQKTQLWWDLPVIDSFYLLAAIY-DLPPARFKKRLDELSELLD 142
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
L + QLS GQ+ R IA A + + EI+ LDE T LD +
Sbjct: 143 LEE--------------LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 1257 ERSVQEALDRACS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKV 1297
+ +++ L G T ++ +H + I A + VID G++
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-11
Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 49/225 (21%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
LS +G L + GP+GCGKSS+ ++ + GR+ K +
Sbjct: 470 SLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG-----------KLF 518
Query: 1163 IVPQEPCLFASTIYENIAYGHESA-------TESEIIEAARLANADKFISSLPDGYKTFV 1215
VPQ P + T+ + I Y S ++ ++ + L N L +
Sbjct: 519 YVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQI--LDNVQ-----LTHILEREG 571
Query: 1216 GERGVQ-----LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSG 1270
G VQ LSGG+KQR+A+AR F K + +LDE TSA+ + E + G
Sbjct: 572 GWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--G 629
Query: 1271 KTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315
T V+HR S + H +LL + G Y
Sbjct: 630 ITLFSVSHRKSLWKY-----------------HEYLLYMDGRGGY 657
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 44/203 (21%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVS-LIERFYDPT-SGQVLLDGHDIKSLKLRW 501
++LNN S V G AL+G SG+GK+T++ L R +G++L++G +
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN---- 76
Query: 502 LRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQV 560
++ G V Q+ T++E + A L
Sbjct: 77 FQRSTGYVEQQDVHSPNLTVREALRF---SALL--------------------------- 106
Query: 561 RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF-MIGRTTL 619
RG LS Q++R+ I + P+IL LDE TS LDS++ + L + G+ L
Sbjct: 107 --RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAIL 162
Query: 620 VIAHRLS--TIRKADVVAVLQQG 640
H+ S K D + +L++G
Sbjct: 163 CTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 33/204 (16%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V L++V S+ R + D+SL + GK L L+GP+G GKS+++ +V P G +
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS---TIYENIAYGHESATESEIIEAARLAN 1199
+GK LR + VPQ+ L + T+ + +I+ A +
Sbjct: 62 KRNGK---------LR--IGYVPQKLYLDTTLPLTV-NRFLRLRPGTKKEDILPALKRVQ 109
Query: 1200 ADKFISSLPDGYKTFVGERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
A I + +Q LSGG+ QRV +ARA + + ++++LDE T +D +
Sbjct: 110 AGHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1259 SVQEALD--RACSGKTTIVVAHRL 1280
++ + +D R ++V+H L
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 3e-11
Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 61/192 (31%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRV-MIDGKDIRKYNLKSLRRHMAIVPQEPC 1169
G+ + +VGP G GK+++ + R P G V IDG+DI + L L
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------- 50
Query: 1170 LFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229
VG + SG + R
Sbjct: 51 ------------------------------------------LIIVGGKKASGSGELRLR 68
Query: 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALD-------RACSGKTTIVVAHRLST 1282
+A+A A K ++++LDE TS LDAE E + + ++ T I+ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1283 IRNAHVIAVIDD 1294
+ A + D
Sbjct: 129 LGPALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-11
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 34/193 (17%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF--------YEPSSGRVMIDGKDIR 1150
+ R+L+L + G +A+VG SG GK++++ ++ Y P SG+V + +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 1151 KYNLKSLRRHMAIVPQEPCLFASTIYENIA--YGHESATESEIIEAARLANADKFISSLP 1208
EP TI E++ G +A EI+ A L++A +
Sbjct: 457 ALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAV-EILNRAGLSDAVLYRRKFS 506
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
+ LS GQK+R +A+ + ++L+DE + LD + V +
Sbjct: 507 E------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 1269 S--GKTTIVVAHR 1279
G T IVV HR
Sbjct: 555 REAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-11
Identities = 53/215 (24%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV-------MIDGKDIRKYNLKS 1156
+SL + G+ +VG SG GK+++ ++ EP+SG V +D
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 1157 LRRHMAIVPQEPCLFA-STIYENI--AYGHESATESEIIEAARLANA----DKFISSLPD 1209
+R++ I+ QE L+ T+ +N+ A G E E ++A ++ + D
Sbjct: 363 AKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILD 422
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269
Y +LS G++ RVA+A+ +++ I++LDE T +D ++ V ++ +A
Sbjct: 423 KYPD-------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475
Query: 1270 --GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
+T I+V+H + + + A++ DGK+ ++G
Sbjct: 476 EMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
+LK +D ++P + +L G+ +ALVG +G GKS+++ ++ Y +G ++
Sbjct: 6 QLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
Query: 1144 IDGKDIRKYNLK-SLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARL-ANA 1200
GK++ K S + I+ QE L TI ENI G E I+ ++ A A
Sbjct: 63 YLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA 122
Query: 1201 DKFISSL--PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DAESE 1257
DK ++ L VGE LS G++Q V IA+ +++++++DE T AL D E+E
Sbjct: 123 DKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE 178
Query: 1258 ---RSVQEALDRACSGKTTIV-VAHRLSTI 1283
R ++E + IV ++HRL I
Sbjct: 179 SLFRVIRELKSQGRG----IVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 46/231 (19%)
Query: 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG-----HDIKSL---KL 499
+ S + G+ + +VG SGSGK+T+++ + P +G+V D+ +L +
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 500 RWL-RQQIGLVSQEPA---LFATTIKENI---LLGRPDADLNEIEEAA-----RVANAYS 547
R L R + G V Q P + NI L+ +I A RV +
Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAA 143
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE----- 602
I LP F SGG +QR+ IAR ++ +P ++ +DE T LD +
Sbjct: 144 RIDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 603 ---KLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649
LV+E +G +++ H L+ R A + V++QG V E G D
Sbjct: 193 LLRGLVRE------LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237
|
Length = 258 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 40/195 (20%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQ--------RFYEPSSGRVMID---GKDIRKYNLKSL 1157
R G+ L LVGP+G GKS+ + ++ +F +P ++D G +++ Y K L
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 1158 RRHM--AIVPQE----PCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGY 1211
+ + PQ P + E + E E+++ L +
Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH------------ 131
Query: 1212 KTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA----ESERSVQEALDR 1266
V +R + QLSGG+ QRVAIA A R A+ DE +S LD + R ++E
Sbjct: 132 ---VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE---L 185
Query: 1267 ACSGKTTIVVAHRLS 1281
A +VV H L+
Sbjct: 186 AEDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-11
Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 46/285 (16%)
Query: 1029 MVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRG--EVELK 1086
++SA GA TL A + F+ L K + P + P P +EL+
Sbjct: 279 LLSAVGALPTLLSA----------QVAFNKL-NKLALAPYKAE-FPRPQAFPDWQTLELR 326
Query: 1087 HVDFSYPSR-----PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+V F+Y P ++L + G+ L L+G +G GKS++ L+ Y+P SG
Sbjct: 327 NVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEA--ARLAN 1199
+++DGK + + R+ + V + LF + G + ++E RL
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPA--NPALVEKWLERLKM 434
Query: 1200 ADKFISSLPDGYKTFVGER--GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A K R ++LS GQK+R+A+ A + +I+LLDE + D
Sbjct: 435 AHKL---------ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485
Query: 1258 RSV-QEALDR-ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEL 1300
R Q L GKT ++H +A + + +G+++EL
Sbjct: 486 REFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
|
Length = 547 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 56/235 (23%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL--- 1157
RD+S G+ L +VG SG GK++++ + P +G V +D + +L +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1158 -RRHMA-----IVPQEP---CLFASTIYENIA----------YGHESATESEI-----IE 1193
RR + V Q P + NI YG AT + I+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
AAR I LP TF SGG +QR+ IAR V ++ +DE T LD
Sbjct: 142 AAR-------IDDLP---TTF--------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
Query: 1254 AESERSVQ-EALD--RACS---GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301
SVQ LD R G ++V H L+ R AH + V+ G+V E G
Sbjct: 184 V----SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPTSGQVLLDGHDIKSLKL 499
E IL +L++ G+ A++G +GSGKST+ +I Y G +L G I L+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 500 RWLRQQIGL------------VSQEPALFATTIKENILLGRPDAD----LNEIEEAARVA 543
R +G+ VS L + G P+ D L I E ++
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 544 N-AYSFIIK-LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
SF+ + + +GF SGG+K+R I + L + + +LDE S LD ++
Sbjct: 138 GMDPSFLSRNVNEGF-----------SGGEKKRNEILQMALLDSELAILDETDSGLDIDA 186
Query: 602 EKLVQEALDRFM-IGRTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHD---ELIAKG 655
K++ E +++ M + ++I H RL K D V V+Q G + + G + EL KG
Sbjct: 187 LKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEKKG 246
|
Length = 252 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK-- 1151
R + +F LS AG+ + + GP+G GK+S++ ++ P +G V+ G+ IR+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 1152 ----YNLKSLRRHMAIVPQEPCLFASTIYENIAY---GHESATESEIIEAARLANADKFI 1204
+L L I T EN+ + H + + EA LA
Sbjct: 70 DEYHQDLLYLGHQPGIKT------ELTALENLRFYQRLHGPGDDEALWEA--LAQ----- 116
Query: 1205 SSLPDGYKTFVGERGV------QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
VG G QLS GQ++RVA+AR ++ +A + +LDE +A+D +
Sbjct: 117 ----------VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166
Query: 1259 SVQEALDRACS-GKTTIVVAHRLSTIRNAHV 1288
++ L + G I+ H+ + + V
Sbjct: 167 RLEALLAQHAEQGGMVILTTHQDLPVASDKV 197
|
Length = 204 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 34/245 (13%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI--ERFYDPTSGQVLLDGHDIKSLKLR-W 501
IL +L V G+ A++G +GSGKST+ + + Y+ T G V G D+ L
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 502 LRQQIGLVSQEPA--------LFATT-------IKENILLGRPD-ADLNEIEEAARVANA 545
+ I + Q P F T + L R D DL +EE
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDL--MEEKIA---- 129
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
++K+P+ D R V SGG+K+R I + + P + +LDE+ S LD ++ K+V
Sbjct: 130 ---LLKMPE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIV 184
Query: 606 QEALDRFMIG-RTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662
+ ++ G R+ +++ H R+ K D V VL QG + + G L+ + E Y
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF-TLVKQLEEQGYGW 243
Query: 663 LIRMQ 667
L Q
Sbjct: 244 LTEQQ 248
|
Length = 248 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-11
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 15/226 (6%)
Query: 1090 FSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149
F + I +D+S G+ + +G +G GKS+ + ++ P+SG+V ++GKD
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDP 88
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEII----EAARLANADKFIS 1205
+ + R + +V + ++ A +S ++I + D
Sbjct: 89 FR-RREEYLRSIGLVMGQ---KLQLWWDLPA--LDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265
L + F+ +LS GQ+ R +A A + +++ LDE T LD ++ +++E L
Sbjct: 143 IL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200
Query: 1266 RACSGK-TTIVVA-HRLSTI-RNAHVIAVIDDGKVAELGSHSHLLK 1308
+ T+++ H I + +ID G++ G+ + L +
Sbjct: 201 EYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-10
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 21/215 (9%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN-LKSLRR 1159
RD+S RAG+ L + G G G++ + + SSG +++DGK +R + +++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 1160 HMAIVP----QEPCLFASTIYENIAYG--HESATESEIIEAARLANADKFISSLPDGYKT 1213
+A VP E + +I ENI + I A A+++I L KT
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKT 392
Query: 1214 FVGERGVQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGK 1271
E+ + LSGG +Q+V +AR ++++LDE T +D ++ + + A GK
Sbjct: 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK 452
Query: 1272 TTIVVAHRLST-----IRNAHVIAVIDDGK-VAEL 1300
+++ S+ + + I V+ +G+ V EL
Sbjct: 453 AILMI----SSELPELLGLSDRILVMREGRIVGEL 483
|
Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 57/267 (21%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF--YEPSSGRVM----------- 1143
+ +++S G+ L ++G SG GKS ++ +++ YEP+SGR++
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 1144 ----------------------IDGKDIRKYNLKSLRRHMAIVPQEPCLFA----STIYE 1177
+D ++ + +R+ +AI+ Q FA T+ +
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT--FALYGDDTVLD 129
Query: 1178 NIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237
N+ E+ E + A I + ++ R LSGG+KQRV +AR
Sbjct: 130 NVL---EALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR--DLSGGEKQRVVLARQLA 184
Query: 1238 RKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAV-IDD 1294
++ + L DE T LD ++ + V AL+ A SG + ++ +H I + A+ +++
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLEN 244
Query: 1295 GKVAELGSHSHLLKNNPDGCYARMIQL 1321
G++ E G PD A ++
Sbjct: 245 GEIKEEG--------TPDEVVAVFMEG 263
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 20/163 (12%)
Query: 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL-KS 1156
I ++SL G+ + L+G +G GK++++ + +SGR++ DGKDI + K
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTF- 1214
+R +AIVP+ +F+ T+ EN+A G A D+F + Y+ F
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMG------------GFFAERDQFQERIKWVYELFP 125
Query: 1215 -VGERGVQ----LSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+ ER +Q +SGG++Q +AI RA + + ++LLDE + L
Sbjct: 126 RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 53/242 (21%)
Query: 1074 PVPDRLRGEV-ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQ 1132
P RL +V E +++ + + + DLS + G + ++GP+G GKS++ ++
Sbjct: 313 PPGPRLGDKVIEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMIT 369
Query: 1133 RFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQ-----EPCLFASTIYENIAYGHESAT 1187
+P SG + I G+ + +A V Q +P T++E I+ G +
Sbjct: 370 GQEQPDSGTIKI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD--- 412
Query: 1188 ESEIIEAARLANADKFISSL----PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243
I R + ++ D K VG QLSGG++ RV +A+ ++
Sbjct: 413 --IIQLGKREVPSRAYVGRFNFKGSDQQK-KVG----QLSGGERNRVHLAKTLKSGGNVL 465
Query: 1244 LLDEATSALDAESERSVQEALDR--ACSGKTTIVVAH------RLSTIRNAHVIAVIDDG 1295
LLDE T+ LD E+ R+++EAL C +V++H R++T H++A D
Sbjct: 466 LLDEPTNDLDVETLRALEEALLEFAGC----AVVISHDRWFLDRIAT----HILAFEGDS 517
Query: 1296 KV 1297
V
Sbjct: 518 HV 519
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 44/236 (18%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG-KDIRKYNLKSLRRH 1160
DLS G+ L+GP+G GK++++ ++ P G V+ DG D+ K +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP-EHRIAR 80
Query: 1161 MAIVP--QEPCLFAS-TIYENI--------------AYGHESATES---EIIEAARLANA 1200
I Q+P +F + T+ EN+ + E++ L +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD- 139
Query: 1201 DKFISSLPDGYKTFVGERGVQ---LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
ER LS GQKQ + I + +++LLDE + +
Sbjct: 140 ----------------ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAET 183
Query: 1258 RSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPD 1312
E L + +VV H + +R A + V+ +G V GS ++N+P
Sbjct: 184 EKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDE-VQNDPK 238
|
Length = 249 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 37/250 (14%)
Query: 427 LIELK--HVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKS-TVVSLIERFYDP- 482
L+++K V FS P +V +N+ + ++ AG+T+ +VG SGSGKS T +L+
Sbjct: 12 LLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG 70
Query: 483 -TSGQVLLDGHDIKSL---KLRWLR-QQIGLVSQEPAL-------FATTIKENILLGRPD 530
G +G +I +L +L LR +QI ++ Q+P + E ++L +
Sbjct: 71 RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM 130
Query: 531 ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV----QLSGGQKQRIAIARAMLKNPA 586
+ EE+ R+ +A +K+P+ R+R + SGG +QR+ IA A+L P
Sbjct: 131 SKAEAFEESVRMLDA----VKMPEA-----RKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 587 ILLLDEATSALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGS 641
+L+ DE T+ALD ++ L+ E F ++I H L + D V V+ G
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNELKREF--NTAIIMITHDLGVVAGICDKVLVMYAGR 239
Query: 642 VSEIGTHDEL 651
E G ++
Sbjct: 240 TMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 66/237 (27%), Positives = 100/237 (42%), Gaps = 48/237 (20%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVI-ALVQRFYEPS-------SGRVMIDGKDIRK 1151
I RDLSLR G+ AL+G +G GKS+++ AL +G V ++G+ +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1152 YNLKSLRRHMAIVPQ--EPCLFASTIYENI---------AYGHESATESEIIEAA-RLAN 1199
+ L R A++PQ +P FA + E + G + + EI A LA
Sbjct: 76 IDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF---------VRKAEIMLLDEATS 1250
A VG LSGG+ RV AR + +LLDE T+
Sbjct: 135 AT-----------ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1251 ALDAESERSVQEALDRACS-----GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302
ALD + + + + R + G IV L+ R+A IA++ DG + G+
Sbjct: 184 ALDLAHQHRLLDTV-RRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 49/232 (21%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--KYNLKSLRR 1159
+ LS R G+TLA++G +G GKS++ ++ EP+SG ++ID + Y+ +S R
Sbjct: 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89
Query: 1160 HMAIVPQEPC-----------LFASTIYENIAYGHESATESEIIEAARLANADKFISSLP 1208
M + Q+P + + N E E +IIE R + LP
Sbjct: 90 RM--IFQDPSTSLNPRQRISQILDFPLRLNTDLEPE-QREKQIIETLRQ------VGLLP 140
Query: 1209 D--GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS------- 1259
D Y + L+ GQKQR+ +ARA + + ++++ DEA ++LD S RS
Sbjct: 141 DHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDM-SMRSQLINLML 193
Query: 1260 -VQEALDRACSGKTTIVVAHRLSTIRNAHV---IAVIDDGKVAELGSHSHLL 1307
+QE G + I V L ++ H+ + V+ G+V E GS + +L
Sbjct: 194 ELQEK-----QGISYIYVTQHLGMMK--HISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 36/211 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE +++ + + ++++ S +P G + ++G +G+GKST+ +I P SG +
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQE-PALFAT-TIKENILLGRPDADLNEIEEAARVANA 545
+ G +K + V Q AL T+ E I G L + E +R A
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---A 425
Query: 546 Y--SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA-ILLLDEATSALDSESE 602
Y F K G D Q ++ QLSGG++ R+ +A+ LK+ +LLLDE T+ LD E+
Sbjct: 426 YVGRFNFK---GSDQQ--KKVGQLSGGERNRVHLAK-TLKSGGNVLLLDEPTNDLDVETL 479
Query: 603 KLVQEALDRFMIGRTTLVIAH------RLST 627
+ ++EAL F +VI+H R++T
Sbjct: 480 RALEEALLEF--AGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 17/200 (8%)
Query: 1108 ARAGKTLALVGPSGCGKSSVI-ALVQRFYEPS-SGRVMIDGKDIRKYNLKSLRRHMAIVP 1165
A G+ LA++GPSG GKS+++ AL R + +G ++ + + K LK V
Sbjct: 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVT 146
Query: 1166 QEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSL--PDGYKTFVGE---RG 1219
Q+ L+ T+ E + + + + ++ A+ IS L T +G RG
Sbjct: 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG 206
Query: 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE-RSVQEALDRACSGKTTIVVAH 1278
+ SGG+++RV+IA + +++LDE TS LDA + R V A GKT + H
Sbjct: 207 I--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
Query: 1279 RLST--IRNAHVIAVIDDGK 1296
+ S+ + + V+ +G+
Sbjct: 265 QPSSRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I+ +++ P+ +V I + S VP+G + + G +G GKS++ ++ + P G
Sbjct: 452 IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFRILGELW-PVYGGR 508
Query: 488 LLDGHDIK--------SLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA 539
L K + L LR QI ++ + ++ G D DL +I +
Sbjct: 509 LTKPAKGKLFYVPQRPYMTLGTLRDQI--------IYPDSSEDMKRRGLSDKDLEQILDN 560
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
++ + I++ G+ V++ LSGG+KQRIA+AR P +LDE TSA+
Sbjct: 561 VQLTH----ILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
Query: 600 ESEKLVQEALDRFMIGRTTLVIAHRLSTIR 629
+ E + F I T ++HR S +
Sbjct: 616 DVEGYMYRLCREFGI--TLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-10
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 35/193 (18%)
Query: 446 LNNFSLTVPAGK-----TIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500
L +FSL V G+ I +VG +G GK+T L+ P G+V + LK+
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKIS 403
Query: 501 WLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK---LPDGFD 557
+ Q I + G + L I + + S IIK L D
Sbjct: 404 YKPQYIK-PDYD--------------GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD 448
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGR- 616
V++ LSGG+ QR+AIA + ++ + LLDE ++ LD E V +A+ R R
Sbjct: 449 KNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE 504
Query: 617 -TTLVIAHRLSTI 628
T LV+ H + I
Sbjct: 505 ATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 22/226 (9%)
Query: 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIV 1164
+L R + ++L+GP+G GK++V + FY+P+ G +++ G+ I + R M +V
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR-MGVV 83
Query: 1165 P--QEPCLFAS-TIYENIAYGHESATESEII------------EAARLANADKFISSLPD 1209
Q LF T+ EN+ ++ + E+ L A ++ +
Sbjct: 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-- 141
Query: 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD--RA 1267
G + L+ GQ++R+ IAR V + EI++LDE + L+ + + + E + R
Sbjct: 142 GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201
Query: 1268 CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPD 1312
T +++ H + + + I V++ G G+ ++NNPD
Sbjct: 202 EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE-IRNNPD 246
|
Length = 255 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 1e-09
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
QLSGG+K R+A+A+ + ++LLDE T+ LD ES +++EAL T I+V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IEL+++ +Y + +L + SLT+ G I LVG +G+GKST++ LI +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 488 LLDGHDIKSLKLRWLRQQIG 507
++K+ + Q G
Sbjct: 58 TWG----STVKIGYFEQLSG 73
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 15/222 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ + + S+ + + ++L G+ AL+G +G GKS+++ ++ +EP+ G +
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1143 MIDGKDIRKYNLK-SLRRHMAIVPQEPCLFAS-TIYENIAYGHESATES---EIIEAARL 1197
I+ + K + K + + + I+ QE + T+ EN+ G + II+ +
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DAES 1256
+ L G K + E+ LS KQ + IA+ + A+++++DE TS+L + E
Sbjct: 123 RVRAAMM-LLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV 181
Query: 1257 ER--SVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDG 1295
+ + L + G + ++H+L+ IR V+ DG
Sbjct: 182 DYLFLIMNQLRK--EGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSSGRVMIDGKDIRKYN 1153
D I + ++L + G+ A++GP+G GKS+ IA YE +SG ++ G+D+ +
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELE 70
Query: 1154 LKS-LRRHMAIVPQEP--------CLFASTIYENIAYGHESATESEIIEAARLANADKFI 1204
R + + Q P F + N ++++ +L A +
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL-NARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 1205 SSLPDGYKTFVGERGVQ--LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262
+ + + R V SGG+K+R I + + + ++ +LDE S LD ++ + V E
Sbjct: 130 LGMDEEFL----NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1263 ALDR-ACSGKTTIVVAH--RLSTIRNAHVIAVIDDGKVAELG 1301
++R ++ +++ H RL + V+ DG++ + G
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 46/230 (20%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV---MIDGKDIRKYNL-KS 1156
RD+S G+ L +VG SG GK++++ + P +G V M DG+ Y + ++
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1157 LRRHMA-----IVPQEP---CLFASTIYENIA----------YGHESATESEIIEAARLA 1198
RR + V Q P + NI YG+ A + +E +
Sbjct: 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEI- 140
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
+ D+ I LP +TF SGG +QR+ IAR V + ++ +DE T LD
Sbjct: 141 DLDR-IDDLP---RTF--------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---- 184
Query: 1259 SVQ-EALD--RACS---GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELG 1301
SVQ LD R G ++V H L+ R A + V+ G+V E G
Sbjct: 185 SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 64/250 (25%), Positives = 95/250 (38%), Gaps = 51/250 (20%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL--- 1157
RD+S G+ L +VG SG GKS+++ + P G + + L L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1158 -RRHMA-----IVPQEPC----------------LFASTI--YENI-AYGHESATESEII 1192
RR + V Q P L A Y NI A + E EI
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI- 137
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
+ R I LP SGG +QR+ IAR V + ++ +DE T L
Sbjct: 138 DPTR-------IDDLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179
Query: 1253 DAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLKN 1309
D + + + L G I+V H L R A + V+ G+V E G +L +
Sbjct: 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL-D 238
Query: 1310 NPDGCYARMI 1319
+P Y +++
Sbjct: 239 DPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 30/207 (14%)
Query: 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163
+S A+ G+ + +GP+G GKS+ + ++ + P SG V + G+D+ + N K ++R++
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79
Query: 1164 VP-----------QEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYK 1212
+P +E F + IY + E E+IE L P+ +K
Sbjct: 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE-EMIELVGLR---------PEQHK 129
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKT 1272
+G QLS G +QRV +A+A + ++++LDE T+ LD ++ + KT
Sbjct: 130 K-IG----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
Query: 1273 TIVVAHRLSTIRNA--HVIAVIDDGKV 1297
I+ H + + VI +I+ GK+
Sbjct: 185 IILSTHIMQEVEAICDRVI-IINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 52/215 (24%)
Query: 1085 LKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM- 1143
+ V P P I +D+SL G + ++G +G GKS+++ R+M
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMA 52
Query: 1144 -IDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------------------- 1182
+D K+ + + +PQEP L + T+ EN+ G
Sbjct: 53 GVD-KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 1183 ----------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ-LSGGQKQRVA 1231
E A EII+AA + D+ + D + + V LSGG+++RVA
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVA 171
Query: 1232 IARAFVRKAEIMLLDEATSALDAES----ERSVQE 1262
+ R + K +++LLDE T+ LDAES E+ +QE
Sbjct: 172 LCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 34/186 (18%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL- 497
R E + + S T+ AG+ + + G +G+GK++++ ++ P +G+VL G I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 498 -----KLRWLRQQIGLVSQEPALFATTIKENI-----LLGRPDADLNEIEEA-ARVANAY 546
L +L Q G+ + L A EN+ L G D + + EA A+V A
Sbjct: 70 DEYHQDLLYLGHQPGI---KTELTAL---ENLRFYQRLHGPGDDE--ALWEALAQVGLA- 120
Query: 547 SFIIKLPDGF-DTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
GF D VR QLS GQ++R+A+AR L + +LDE +A+D + +
Sbjct: 121 --------GFEDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
Query: 606 QEALDR 611
+ L +
Sbjct: 169 EALLAQ 174
|
Length = 204 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 28/228 (12%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVV-SLIERFYDP-------TSGQVLLDG---H 492
IL + SL + G+ AL+G +G+GKST++ +L +G V L+G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 493 DIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKL 552
I + +L LR + +Q PA FA + +E +LLGR R + L
Sbjct: 75 AIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL 132
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLK---------NPAILLLDEATSALD-SESE 602
V LSGG+ R+ AR + + P LLLDE T+ALD +
Sbjct: 133 AGA-TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 603 KLVQ--EALDR-FMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
+L+ L R + +G +V L+ R AD +A+L G++ G
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-09
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY---DPTSGQVLLDGHDIKSLKLRWLRQ 504
N SL V AG+ + L G G+G++ L E Y G+++L+G +I +L R
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-QRL 336
Query: 505 QIGLV-----SQEPALFA-TTIKENI---LLGRPDADLNEIEEAARVANAYSFI-IKLPD 554
GLV Q L+ + N+ R + E A + + IK
Sbjct: 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH 396
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI 614
+ R LSGG +Q++ IA+ + +P +L++DE T +D V D + +
Sbjct: 397 A-EQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD------VSARNDIYQL 445
Query: 615 GRT-------TLVIAHRLSTIRK-ADVVAVLQQGSVS 643
R+ L I+ L I + AD V V+ QG +S
Sbjct: 446 IRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482
|
Length = 510 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 439 SRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498
SR E + V AG+ + + G +G+GK+T++ ++ SGQ+ +DG
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 499 LRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNEIEEAARVANAYSFIIKL 552
+ + + P L A + EN+ L GR A ++ + I+ L
Sbjct: 80 RS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---------RAKQMPGSALAIVGL 127
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 612
DT VR QLS GQK+R+A+AR L + LLDE + LD E LV +
Sbjct: 128 AGYEDTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
Query: 613 M-IGRTTLVIAH 623
+ G LV H
Sbjct: 184 LRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-09
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 36/193 (18%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--------YDPTSGQVLLDGHDIKS 496
+L N +L + G +A+VG SG+GK+T++ +I Y P SG+V + + + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLN---EIEEAARVANAYSFIIKLP 553
L EP TI E+ L DLN EI A +++A + K
Sbjct: 458 LIPG---------EYEPEFGEVTILEH--LRSKTGDLNAAVEILNRAGLSDAVLYRRKFS 506
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF- 612
+ LS GQK+R +A+ + + P +LL+DE + LD + V +
Sbjct: 507 E------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554
Query: 613 -MIGRTTLVIAHR 624
G T +V+ HR
Sbjct: 555 REAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 29/247 (11%)
Query: 412 DRNSESGLELDSVSGLIELKHVDFSYPSRPEVR-ILNNFSLTVPAGKTIALVGSSGSGKS 470
D N E +E +S + +++ + + E R ILNN V G AL+G+SG+GK+
Sbjct: 744 DVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKT 803
Query: 471 TVVS-LIERFYDP--TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-- 524
T+++ L ER T G L++G + S R IG V Q+ T T++E++
Sbjct: 804 TLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR----SIGYVQQQDLHLPTSTVRESLRF 859
Query: 525 --LLGRPDADLNE--IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580
L +P E ++++ D V G L+ Q++R+ I
Sbjct: 860 SAYLRQP----KSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915
Query: 581 MLKNPAILL-LDEATSALDSESE----KLVQEALDRFMIGRTTLVIAHRLSTIRKA--DV 633
++ P +LL LDE TS LDS++ KL+++ D G+ L H+ S I D
Sbjct: 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH---GQAILCTIHQPSAILFEEFDR 972
Query: 634 VAVLQQG 640
+ +LQ+G
Sbjct: 973 LLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 5e-09
Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
DLSL G+ ++GP+G GK++++ ++ P G V+ G D+ + R
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR-A 77
Query: 1162 AIVP--QEPCLFAS-TIYEN--IAYGHE-----------SATESEIIEAA----RLANAD 1201
I Q+P +F + T++EN +A + SA E + IE LA+
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-DAESERSV 1260
++ L LS GQKQ + I ++ +++LLDE + + D E+E++
Sbjct: 138 DRLAGL--------------LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPD 1312
E L + +VV H + +R+ A + V+ G V GS ++ +P
Sbjct: 184 -ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ-VQADPR 234
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-09
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 23/212 (10%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK-SLKLRWLRQ 504
LNN S VP G+ + ++G +GSGKST+ +LI P G V DIK S L +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAAL--IAI 92
Query: 505 QIGLVSQEPALFATTIKENILLGRPDADLNEI-EEAARVANAYSFIIKLPDGFDTQVRER 563
GL Q + +K +++G + EI E A+ FI + +
Sbjct: 93 SSGLNGQLTGIENIELK-GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY------- 144
Query: 564 GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIA 622
S G K R+ A ++ NP IL++DEA S D K + ++ F G+T I+
Sbjct: 145 ----SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS 200
Query: 623 HRLSTIRKADVVAV-LQQGSVSEIGTHDELIA 653
H LS ++ A+ L G V E G E++
Sbjct: 201 HSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232
|
Length = 549 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-09
Identities = 69/268 (25%), Positives = 111/268 (41%), Gaps = 70/268 (26%)
Query: 1059 LDRKTEIEP--DDPDAT---PVPDRLRGE--VELKHVDFSYPSRPDIPIFRDLSLRARAG 1111
LDR ++ +DPD P PD G + F YP P +F++L+
Sbjct: 478 LDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP--LLFKNLNFGIDLD 535
Query: 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQE---- 1167
+A+VGP+G GKS+++ L+ +PSSG V +S + MA+ Q
Sbjct: 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTV-----------FRSAKVRMAVFSQHHVDG 584
Query: 1168 ------PCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
P L+ + + K + L G G +Q
Sbjct: 585 LDLSSNPLLYMMRCFPGVP-------------------EQKLRAHL--GSFGVTGNLALQ 623
Query: 1222 ----LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVA 1277
LSGGQK RVA A+ +K I+LLDE ++ LD ++ ++ + L G ++V+
Sbjct: 624 PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGG--VLMVS 681
Query: 1278 HRLSTIRNAHVIA-------VIDDGKVA 1298
H + H+I+ V+ +GKV
Sbjct: 682 H------DEHLISGSVDELWVVSEGKVT 703
|
Length = 718 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 51/246 (20%), Positives = 108/246 (43%), Gaps = 51/246 (20%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-SG 485
++E +++ P + +++ S ++ G+ + + G G+G++ +V + Y G
Sbjct: 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEG 316
Query: 486 QVLLDGH--DIKSLKLRWLRQQIGLVSQE-------PALFATTIKENILLGRPDADLNEI 536
V ++G DI++ + +R I +V ++ P L + +NI L
Sbjct: 317 NVFINGKPVDIRN-PAQAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLS--------- 363
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQ---------------LSGGQKQRIAIARAM 581
V ++ F +++ + Q+ +Q LSGG +Q+ +A+ +
Sbjct: 364 -----VLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKML 418
Query: 582 LKNPAILLLDEATSALD----SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAV 636
L NP +L+LDE T +D E KL+ + G +V++ L+ + +D V V
Sbjct: 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE---GVAIIVVSSELAEVLGLSDRVLV 475
Query: 637 LQQGSV 642
+ +G +
Sbjct: 476 IGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 70/284 (24%), Positives = 110/284 (38%), Gaps = 34/284 (11%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR--- 500
+ L SLT+ AG + A VG++GSGKS + + SG+ I L
Sbjct: 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76
Query: 501 ------WLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVAN-AYSFIIKLP 553
W R ++S T E I +E+++ AR A F
Sbjct: 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQ--------DEVKDPARCEQLAQQF----- 123
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
G + R LS G+ ++ + +A++ P +L+LDE LD S + + E L
Sbjct: 124 -GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH 182
Query: 614 IGRTTLV-IAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAH 671
TLV + +R I VL +++E G +E++ + + A+L E
Sbjct: 183 QSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ---ALVAQLAH-SEQLE 238
Query: 672 ETALNNARKSSARPSSARNSVSSPIIARNS--SYGRSPYSRRLS 713
L + SAR + N I+ N SY P LS
Sbjct: 239 GVQLPEPDEPSARHALPAN--EPRIVLNNGVVSYNDRPILHNLS 280
|
Length = 490 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 40/197 (20%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV--------MID---GKDIRKY--NLK 1155
R GK + ++GP+G GKS+ + ++ +P+ GR +I G +++ Y L
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157
Query: 1156 SLRRHMAIVPQE----PCLFASTIYENIAYGHESATESEIIEAARLANA-DKFISSLPDG 1210
PQ P + + E + E E++E L N D+ +S
Sbjct: 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVS----- 212
Query: 1211 YKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE----RSVQEALDR 1266
+LSGG+ QRVAIA A +R A++ DE +S LD R ++E +
Sbjct: 213 ----------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE- 261
Query: 1267 ACSGKTTIVVAHRLSTI 1283
GK IVV H L+ +
Sbjct: 262 --DGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 44/187 (23%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
G+ + ++GP+G GK++ + L+ +P G +D+ K + K PQ
Sbjct: 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG----SEEDL-KVSYK---------PQ-- 408
Query: 1169 CLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVG---------ERG 1219
+ S Y+ T +++ R A F SS +KT + ER
Sbjct: 409 --YISPDYD--------GTVEDLL---RSAIRSAFGSSY---FKTEIVKPLNLEDLLERP 452
Query: 1220 VQ-LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVV 1276
V LSGG+ QRVAIA A R+A++ LLDE ++ LD E V + + R + KT +VV
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV 512
Query: 1277 AHRLSTI 1283
H + I
Sbjct: 513 DHDIYMI 519
|
Length = 591 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 39/268 (14%)
Query: 427 LIELKH--VDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI----ERFY 480
L+++++ ++F V+ ++ S+T+ G+ LVG SGSGKS + I + +
Sbjct: 3 LLDIRNLTIEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW 61
Query: 481 DPTSGQVLLDGHDIKSLKLRWLRQQIG----LVSQEP-------ALFATTIKENI----L 525
T+ ++ D D+ L R R+ +G ++ QEP + +NI
Sbjct: 62 RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTY 121
Query: 526 LGRPDADLN-----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580
GR IE RV IK D D +R +L+ G+ Q++ IA A
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVG------IK--DHKDA-MRSFPYELTEGECQKVMIAIA 172
Query: 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVL 637
+ P +L+ DE T+A++ ++ + L R T L+I+H L + + AD + VL
Sbjct: 173 LANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
Query: 638 QQGSVSEIGTHDELIAKGENGVYAKLIR 665
G E EL+ + LIR
Sbjct: 233 YCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 49/239 (20%)
Query: 444 RILNNFSLTVPAGKTIALVGSSGSGKS----TVVSLIERFYDPTSGQVLLDGHDIKSLKL 499
R ++ S +V G+ + +VG SGSGKS ++ LI+ + ++ +G D++ +
Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80
Query: 500 RWLRQQIG----LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDG 555
+ R +G ++ Q+P T++ +G +I EA +V G
Sbjct: 81 KERRNLVGAEVAMIFQDPM---TSLNPCYTVGF------QIMEAIKVHQG---------G 122
Query: 556 FDTQVRERGV--------------------QLSGGQKQRIAIARAMLKNPAILLLDEATS 595
R+R + QLSGG QR+ IA A+ P +L+ DE T+
Sbjct: 123 NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182
Query: 596 ALDSESEKLVQEALDRFMIGRTT--LVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
ALD + + E L ++I H L+ + + A + V+ G V E G ++
Sbjct: 183 ALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 4e-08
Identities = 64/224 (28%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I F YP P + N + + IA+VG +G GKST++ LI P+SG
Sbjct: 508 IISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
Query: 487 VLLDGHDIKSLKLR---WLRQQI-GL-VSQEPALFATTIKENILLGRPDADLNEIEEAAR 541
V +S K+R + + + GL +S P L+ + + A L
Sbjct: 566 VF------RSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN 619
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+A + LSGGQK R+A A+ K P ILLLDE ++ LD ++
Sbjct: 620 LALQPMY-----------------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662
Query: 602 -EKLVQEALDRFMIGRTTLVIAHRLSTIR-KADVVAVLQQGSVS 643
E L+Q L F G L+++H I D + V+ +G V+
Sbjct: 663 VEALIQ-GLVLFQGG--VLMVSHDEHLISGSVDELWVVSEGKVT 703
|
Length = 718 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 442 EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501
V L N +++P + + G SGSGKST+V+ E Y S K R
Sbjct: 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLY--------------ASGKAR- 49
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVR 561
L+S P + I + + F+I + G+ T +
Sbjct: 50 ------LISFLPKFSRNKL---IFIDQ-----------------LQFLIDVGLGYLTLGQ 83
Query: 562 ERGVQLSGGQKQRIAIARAMLKNP--AILLLDEATSALDSESEKLVQEALDRFM-IGRTT 618
+ LSGG+ QR+ +A + P + +LDE ++ L + + E + + +G T
Sbjct: 84 KLST-LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142
Query: 619 LVIAHRLSTIRKAD 632
++I H L + AD
Sbjct: 143 ILIEHNLDVLSSAD 156
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 554 DGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 613
DG + + + LSGG+ QR+AIA A+L+N L DE ++ LD E A+ R
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
Query: 614 I--GRTTLVIAHRLSTIRK-ADVVAVLQ 638
+T LV+ H L+ + +D + V +
Sbjct: 119 EEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-08
Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 58/204 (28%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E++++ + + P + N +L + AG+ +A++G +G GK+T++ + +P SG V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 488 LLDGHDIKSLKLRWLRQ-QIGLVSQEPA--------LFA-----TTIKENIL-----LGR 528
+W IG +Q+ A LF ++ LGR
Sbjct: 377 ------------KWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR 424
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAIL 588
++I+++ +V LSGG+K R+ + M++ P +L
Sbjct: 425 LLFSQDDIKKSVKV------------------------LSGGEKGRMLFGKLMMQKPNVL 460
Query: 589 LLDEATSALDSESEKLVQEALDRF 612
++DE T+ +D ES + + AL+++
Sbjct: 461 VMDEPTNHMDMESIESLNMALEKY 484
|
Length = 530 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQE- 1167
+ + ++GP+G GK++ I ++ +P G + I+ + + PQ
Sbjct: 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------------SYKPQYI 70
Query: 1168 PCLFASTIYE------NIAYGHESATESEIIEAARLANADKFISS-LPDGYKTFVGERGV 1220
+ T+ + Y H ++EI + ++ ++ + +P+
Sbjct: 71 KADYEGTVRDLLSSITKDFYTH-PYFKTEIAKPLQI---EQILDREVPE----------- 115
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAH 1278
LSGG+ QRVAIA + A+I LLDE ++ LD E + + R + KT VV H
Sbjct: 116 -LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 42/187 (22%)
Query: 1118 GPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK----------YNLKSLRRHMAIVPQE 1167
G +GCGKSS++ ++ +PSSG + +I +NL L+ M
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL-GLKLEM------ 85
Query: 1168 PCLFASTIYENIAYGHESATESEIIEAA----RLANADKFISSLPDGYKTFVGERGVQLS 1223
T++EN+ + E +E + AA +L + + E+ LS
Sbjct: 86 ------TVFENLKFWSEIYNSAETLYAAIHYFKLHD--------------LLDEKCYSLS 125
Query: 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD-RACSGKTTIVVAHRLST 1282
G ++ VAIAR ++++ LLDE + L E+ + + +A SG ++ +H S+
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
Query: 1283 IRNAHVI 1289
I++A ++
Sbjct: 186 IKSAQIL 192
|
Length = 195 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 45/268 (16%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI----ERFYDPTSGQVLLDGHDIKSLK 498
V+ ++ S+T+ G+ LVG SGSGKS + I + + T+ ++ DI L+
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRF--DDIDLLR 77
Query: 499 L------RWLRQQIGLVSQEPALF---ATTIKENILLGRPDADLN-------------EI 536
L + + + ++ QEP + + ++ P I
Sbjct: 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAI 137
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E RV IK D D +R +L+ G+ Q++ IA A+ P +L+ DE T++
Sbjct: 138 ELLHRVG------IK--DHKDI-MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNS 188
Query: 597 LDSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
++ ++ + L R T L+I+H L I + AD + VL G E +EL+
Sbjct: 189 MEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
Query: 654 KGENGVYAKLIRM-----QEAAHETALN 676
+ LIR H++ LN
Sbjct: 249 MPHHPYTQALIRAIPDFGSALPHKSRLN 276
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 8e-08
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 34/183 (18%)
Query: 1108 ARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK--YNLKSLRRHMAIVP 1165
G+ + +VGP+G GK++ L+ +P G V + K K Y I P
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQY----------IKP 411
Query: 1166 QEPC---LFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222
+I +++ S +SEII+ L L V + L
Sbjct: 412 DYDGTVEDLLRSITDDL---GSSYYKSEIIK--PL--------QLERLLDKNVKD----L 454
Query: 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRL 1280
SGG+ QRVAIA R A++ LLDE ++ LD E +V +A+ R T +VV H +
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Query: 1281 STI 1283
I
Sbjct: 515 YMI 517
|
Length = 590 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 9e-08
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 45/210 (21%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L++++ V Y R IL++ L + G I L+G +G+GKST++ L+ P SG+
Sbjct: 312 LLKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE 368
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
+ L K +KL G +Q F AD + ++ AR+A
Sbjct: 369 IGLA----KGIKL-------GYFAQHQLEFLR------------ADESPLQHLARLAPQ- 404
Query: 547 SFIIKLPD-----GFD-TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
KL D GF +V E + SGG+K R+ +A + + P +LLLDE T+ LD +
Sbjct: 405 ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464
Query: 601 SEKLVQEAL------------DRFMIGRTT 618
+ + EAL DR ++ TT
Sbjct: 465 MRQALTEALIDFEGALVVVSHDRHLLRSTT 494
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 9e-08
Identities = 50/185 (27%), Positives = 96/185 (51%), Gaps = 24/185 (12%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E+++V++ + + +D S + + G +AL+GP+GCGK++++ L+ + SGR+
Sbjct: 321 EMENVNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377
Query: 1144 IDGK-DIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAAR--LANA 1200
K ++ ++ +H A + E T+ +N+A G + E + R L
Sbjct: 378 CGTKLEVAYFD-----QHRAELDPE-----KTVMDNLAEGKQ---EVMVNGRPRHVLGYL 424
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
F+ P T V LSGG++ R+ +AR F++ + +++LDE T+ LD E+ +
Sbjct: 425 QDFLFH-PKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479
Query: 1261 QEALD 1265
+E LD
Sbjct: 480 EELLD 484
|
Length = 635 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 38/268 (14%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153
S P + +++L+ R AL+G +G GKS+++ + Y+ SG ++ GK+I +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1154 LK-SLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGY 1211
K +L +++V QE L ++ +N+ G T+ ++ ++ K I D
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLG-RYPTKGMFVDQDKMYRDTKAIFDELD-I 124
Query: 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL------- 1264
+ LS Q Q + IA+AF A+I+++DE TS+L +E+ V
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTIIRKLK 181
Query: 1265 DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 1323
+R C + ++H++ I I ++ DG+ + L
Sbjct: 182 ERGCG---IVYISHKMEEIFQLCDEITILRDGQ------------------WIATQPLAG 220
Query: 1324 FTHSQVIGMTSGSSSSAR--PKDDEERE 1349
T ++I M G S + R K+++ E
Sbjct: 221 LTMDKIIAMMVGRSLTQRFPDKENKPGE 248
|
Length = 491 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 441 PEVRILNNFSLTVPAGKTIALVGSSGSGKST----VVSLIERFYDPTSGQVLLDGHDIKS 496
IL + G+ ++G GSG ST + S + F+ G + DG +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 497 LKLRWLRQQI----------GLVSQEPALFATTIK--ENILLGRPDADLNEIEEAARVAN 544
+K + + L E FA K +N RPD ++ E A +A+
Sbjct: 132 IKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQN----RPDG-VSREEYAKHIAD 186
Query: 545 AYSFIIKLPDGFDTQVRE---RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
Y L +T+V RGV SGG+++R++IA A L I D AT LDS
Sbjct: 187 VYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 29/188 (15%)
Query: 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-PTSGQV 487
E++++ P P ++ +++ S ++ G+ + + G G+G++ +V + Y G++
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 488 LLDGHDIKSLKLR----WLRQQIGLVSQE-------PALFATTIKENILLGRPD--ADLN 534
+DG K +K+R + Q I +V ++ P + + +NI L D +
Sbjct: 321 FIDG---KPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGS 374
Query: 535 EIEEAARVANAYSFI----IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
I++AA + I +K +LSGG +Q+ +A+ +L NP IL+L
Sbjct: 375 RIDDAAELKTILESIQRLKVKTASPE-----LAIARLSGGNQQKAVLAKCLLLNPKILIL 429
Query: 591 DEATSALD 598
DE T +D
Sbjct: 430 DEPTRGID 437
|
Length = 506 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-07
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 64/203 (31%)
Query: 1096 PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM------IDGKDI 1149
P I +D+SL G + ++G +G GKS+++ R+M +G+
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVDKEFEGEAR 65
Query: 1150 RKYNLKSLRRHMAIVPQEPCLFAS-TIYENI-------------------AYGH------ 1183
+K + +PQEP L T+ EN+ AY
Sbjct: 66 PAPGIK-----VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD 120
Query: 1184 ----ESATESEIIEAARLANADKFIS------SLPDGYKTFVGERGVQLSGGQKQRVAIA 1233
E EII+AA + D + P V +LSGG+++RVA+
Sbjct: 121 ALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGERRRVALC 175
Query: 1234 RAFVRKAEIMLLDEATSALDAES 1256
R + K +++LLDE T+ LDAES
Sbjct: 176 RLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 42/178 (23%)
Query: 1109 RAGKTLALVGPSGCGKSSVI-ALVQRFYEPS-SGRVMIDGKDIRKYNLKSLRRHMAIVPQ 1166
+ G AL+G SG GK++++ L R +G ++I+G+ + K + +R V Q
Sbjct: 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQRSTGYVEQ 86
Query: 1167 EPCLFA-STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225
+ T+ E + + +A L RG LS
Sbjct: 87 QDVHSPNLTVREALRF------------SALL--------------------RG--LSVE 112
Query: 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVAHRLST 1282
Q++R+ I K I+ LDE TS LD+++ ++ L + A SG+ + H+ S
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
DG + + LSGG+ QRVAIA A +R A L DE ++ LD E + A+ R
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118
Query: 1269 --SGKTTIVVAHRLSTI 1283
KT +VV H L+ +
Sbjct: 119 EEGKKTALVVEHDLAVL 135
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 38/249 (15%)
Query: 1070 PDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIA 1129
PD P GEV L+ + + +P I RD+S G+ L + G G ++ ++
Sbjct: 240 PDKENKP----GEVILEVRNLTSLRQPSI---RDVSFDLHKGEILGIAGLVGAKRTDIVE 292
Query: 1130 LVQRFYEPSSGRVMIDGKDIRKYN-LKSLRRHMAIVPQEPCLFAST-IYENIAYGHES-- 1185
+ E S+G + + GK I +N +++ A+V +E ST IY + G S
Sbjct: 293 TLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER---RSTGIYAYLDIGFNSLI 349
Query: 1186 ------ATESEIIEAARLANADKF-ISSL---PDGYKTFVGERGVQLSGGQKQRVAIARA 1235
+ +++ +R+ + ++ I S+ G++T +G LSGG +Q+V I R
Sbjct: 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG----SLSGGNQQKVIIGRW 405
Query: 1236 FVRKAEIMLLDEATSALDAESERSV-QEALDRACSGKTTIVVAHRLS-----TIRNAHVI 1289
+ + EI++LDE T +D ++ + Q + A K I+++ + T R I
Sbjct: 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDR----I 461
Query: 1290 AVIDDGKVA 1298
V+ +G VA
Sbjct: 462 LVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 39/248 (15%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L++ SL G I LVG +GSGKST+ ++I PT G+V +G ++ + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAI-----S 93
Query: 506 IGLVSQEPALFATTIKENI-----LLGRPDADLNEI-EEAARVANAYSFIIKLPDGFDTQ 559
GL Q + ENI +G ++ + + + FI +
Sbjct: 94 AGLSGQLTGI------ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ-------P 140
Query: 560 VRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM----IG 615
V+ + S G + ++ + + NP IL++DEA S D + Q+ LD+
Sbjct: 141 VK----KYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQN 193
Query: 616 RTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGV--YAKLIRMQEAAHE 672
+T ++H L +R+ +A ++ G + + G D+++ K E + + K + ++
Sbjct: 194 KTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFR 253
Query: 673 TALNNARK 680
L+ +R
Sbjct: 254 NKLDESRF 261
|
Length = 264 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 21/168 (12%)
Query: 442 EVRILNNFSLT-VPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-- 498
E + L + S+T +P+ T + G++G GKS+++ +I P+SG + +I ++
Sbjct: 12 EQKNLFDLSITFLPSAITY-IKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKP 70
Query: 499 -LRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD 557
++ +GL + T+ EN+ +EI +A A KL D D
Sbjct: 71 YCTYIGHNLGLKLE------MTVFENLKF------WSEIYNSAETLYAAIHYFKLHDLLD 118
Query: 558 TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
E+ LS G ++ +AIAR + + LLDE + L E+ L+
Sbjct: 119 ----EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 6e-07
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
+LSGG+ QRVAIA A +R A+ DE TS LD +V + GK +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 7e-07
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 55/243 (22%)
Query: 1074 PVPDRLRGEV-ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQ 1132
P RL +V E +++ S+ R + DLS G + ++GP+G GKS++ ++
Sbjct: 315 PPGPRLGDKVIEAENLSKSFGDRL---LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMIT 371
Query: 1133 RFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQ-----EPCLFASTIYENIAYGHESAT 1187
+P SG + I G+ + +A V Q +P T++E I+ G +
Sbjct: 372 GQEQPDSGTIKI-GETV----------KLAYVDQSRDALDP---NKTVWEEISGGLD--- 414
Query: 1188 ESEIIE-AARLANADKFISSL----PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
II+ R + ++ D K VG LSGG++ R+ +A+ + +
Sbjct: 415 ---IIKVGNREIPSRAYVGRFNFKGGDQQK-KVG----VLSGGERNRLHLAKTLKQGGNV 466
Query: 1243 MLLDEATSALDAESERSVQEALDR--ACSGKTTIVVAH------RLSTIRNAHVIAVIDD 1294
+LLDE T+ LD E+ R+++EAL C+ +V++H R++T H++A D
Sbjct: 467 LLLDEPTNDLDVETLRALEEALLEFPGCA----VVISHDRWFLDRIAT----HILAFEGD 518
Query: 1295 GKV 1297
+V
Sbjct: 519 SQV 521
|
Length = 556 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 8e-07
Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 46/215 (21%)
Query: 449 FSLTVP-AGKTIALVGSSGSGKSTVVSLIE--------RFYDPTSGQVLLDGH------- 492
+ L P GK + ++G +G GKST + ++ R+ DP S ++
Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151
Query: 493 ---DIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD--LNEIEEAARVANAYS 547
+ +LR + + V P + + E LL + D +E+ E + N
Sbjct: 152 YFKKLYEGELRAV-HKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENV-- 206
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE----K 603
D V +LSGG+ QR+AIA A+L++ + DE +S LD +
Sbjct: 207 --------LDRDVS----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVL 637
+++E + G+ +V+ H L+ + +D V +L
Sbjct: 255 VIRELAED---GKYVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-07
Identities = 59/264 (22%), Positives = 111/264 (42%), Gaps = 36/264 (13%)
Query: 1049 GRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEV--ELKHVDFSYPSRPDIPIFRDLSL 1106
GR + S++ P +P G+V E +++ P D+S
Sbjct: 239 GREITSLY----------PHEPHEI-------GDVILEARNLTCWDVINPHRKRVDDVSF 281
Query: 1107 RARAGKTLALVGPSGCGKSSVIALVQRFYEPS-SGRVMIDGKDIRKYN-LKSLRRHMAIV 1164
R G+ L + G G G++ ++ + Y G V I+GK + N +++R +A+V
Sbjct: 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341
Query: 1165 PQEPCLFASTIYENIAYGH--------ESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
P++ I + G + I AA L I L KT
Sbjct: 342 PEDRK--RHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLK--VKTASP 397
Query: 1217 ERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTI 1274
+ +LSGG +Q+ +A+ + +++LDE T +D ++ + + +++ A G I
Sbjct: 398 FLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
Query: 1275 VVAHRLSTIRN-AHVIAVIDDGKV 1297
VV+ L+ + + + VI +GK+
Sbjct: 458 VVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 23/182 (12%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR-WLRQ 504
+N+ S T+ G+ + + G G+G++ ++ ++ TSG V LDGH++ + + L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 505 QIGLVSQEPA----LFATTIKENILL------GRPDADLNEIEEAARVANAYSFI----I 550
I +S++ + ++KEN+ L R L +E V++ FI I
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSD---FIRLFNI 384
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALD 610
K P + + LSGG +Q++AIAR ++ P +L+LDE T +D ++K + + ++
Sbjct: 385 KTP-SMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439
Query: 611 RF 612
+F
Sbjct: 440 QF 441
|
Length = 501 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 49/236 (20%)
Query: 1104 LSLRARAGKTLALVGPSGCGKS-SVIALVQRFYEPSSGRVM-----IDGKDIRKYNLKSL 1157
+S + G+ + +VG SG GKS S +A++ P GRVM +G+D+++ + K
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP--GRVMAEKLEFNGQDLQRISEKER 83
Query: 1158 RR----HMAIVPQEPCLFASTIYENIAYGHESATESEIIEA-------ARLANADKFISS 1206
R +A++ Q+P + Y + + +I+EA + + I
Sbjct: 84 RNLVGAEVAMIFQDPMTSLNPCY-TVGF--------QIMEAIKVHQGGNKKTRRQRAIDL 134
Query: 1207 LPDGYKTFVG------ERGV---QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
L VG V QLSGG QRV IA A + ++++ DE T+ALD +
Sbjct: 135 L-----NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189
Query: 1258 RSVQEAL----DRACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLK 1308
+ E L + +++ H L+ + AH I V+ G+V E G + +
Sbjct: 190 AQIIELLLELQQKENMA--LVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
|
Length = 326 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 48/223 (21%), Positives = 106/223 (47%), Gaps = 26/223 (11%)
Query: 447 NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK-SLKLRWLRQQ 505
+ S +V G+ + G GSG++ +++ + G++ L+G DI L +++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 506 IGLVSQ---EPALFAT-TIKENILLGRPDAD---------LNEIEEAARVANAYSFIIKL 552
+ +++ + F +I +N+ + R D +E++E R A ++ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ-RTAENQRELLAL 398
Query: 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQEA 608
V + +LSGG +Q++ I++ + P +++ DE T +D +E K++++
Sbjct: 399 KC---HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455
Query: 609 LDRFMIGRTTLVIAHRLSTIRKA-DVVAVLQQGSVSEIGTHDE 650
D G+ L+++ L I D +AV +G +++I T+ +
Sbjct: 456 ADD---GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495
|
Length = 510 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 449 FSLTVPA-GKTIALVGSSGSGKSTVVSLIE--------RFYDPTSGQVLLD---GHDIKS 496
L VP G+ + LVG +G GKST + ++ +F DP +LD G ++++
Sbjct: 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77
Query: 497 LKLRWLRQQIGL------VSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFII 550
+ L + + V P + E LL + D + +++E
Sbjct: 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGE--LLKKKD-ERGKLDELVDQLEL----- 129
Query: 551 KLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDS----ESEKLV 605
V +R + QLSGG+ QR+AIA A+ ++ DE +S LD + +L+
Sbjct: 130 -------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLI 182
Query: 606 QEALDRFMIGRTTLVIAHRLS 626
+E + LV+ H L+
Sbjct: 183 RELAED---DNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 1094 SRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV--QRFYEPSSGRVMIDGKDIRK 1151
S D I R L+L R G+ A++GP+G GKS++ A + + YE + G V GKD+ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 1152 YNLKSLRR-----HMAIVPQEPC--------LFASTIYENI-AYGHESAT-----ESEII 1192
L R MA Q P F T + +Y + + +
Sbjct: 70 --LSPEDRAGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLME 125
Query: 1193 EAARLAN--ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
E L D S+ G+ SGG+K+R I + V + E+ +LDE+ S
Sbjct: 126 EKIALLKMPEDLLTRSVNVGF-----------SGGEKKRNDILQMAVLEPELCILDESDS 174
Query: 1251 ALDAESERSVQEALDRACSGKTT-IVVAHR---LSTIRNAHVIAVIDDGKVAELGSHS 1304
LD ++ + V + ++ GK + I+V H L I+ +V V+ G++ + G +
Sbjct: 175 GLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 38/190 (20%)
Query: 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS-SVIALVQRFYEPSSGRV--- 1142
V FS P D+ DL+ RAG+TL +VG SG GKS + AL+ ++GR+
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL--AANGRIGGS 75
Query: 1143 -MIDGKDIRKYNLKSLRR----HMAIVPQEPCLFASTIYENIA------------YGHES 1185
+G++I K L + ++++ Q+P + + Y +
Sbjct: 76 ATFNGREILNLPEKELNKLRAEQISMIFQDP-MTSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 1186 ATESEI--IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243
A E + ++A ++ A K + P + SGG +QRV IA A + + +++
Sbjct: 135 AFEESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLL 183
Query: 1244 LLDEATSALD 1253
+ DE T+ALD
Sbjct: 184 IADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK-SLRRHMAI 1163
S RAG+ + L G G G+S ++ L+ ++G+V +DGK I + + ++R + +
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 1164 VP----QEPCLFASTIYENI---AYGHESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
P E + ++ +NI A H I NAD+FI SL KT
Sbjct: 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSR 390
Query: 1217 ERG-VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD--AESE 1257
E+ + LSGG +Q+ + R +++LLDE T +D A+ E
Sbjct: 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-06
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 67/240 (27%)
Query: 449 FSLTVP-AGKTIALVGSSGSGKSTVVSL---------------------IERFYDPTSGQ 486
+ L +P GK ++G +G GK+T V + ++RF G
Sbjct: 91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRF----RGT 146
Query: 487 VLLDGHDIKSLKLRWLR--QQIGLVSQEPALFATTIKENILLGRPD--ADLNEIEEAARV 542
L + K L ++ + V P +F ++E LL + D L+E+ E +
Sbjct: 147 ELQN--YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGL 202
Query: 543 ANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
N + +R + +LSGG+ QR+AIA A+L++ DE TS LD
Sbjct: 203 EN---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247
Query: 602 EKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVY 660
V + G+ LV+ H L+ + AD V H IA GE G Y
Sbjct: 248 RLNVARLIRELAEGKYVLVVEHDLAVLDYLADNV-------------H---IAYGEPGAY 291
|
Length = 590 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-06
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVS-----LIERFYDPTSGQVL-----LDGHDI 494
++ + S+T+ G+ LVG +G+GK+T + I+ P + Q+L + G D
Sbjct: 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGI--PKNCQILHVEQEVVGDDT 249
Query: 495 KSL---------KLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD------------- 532
+L + + L ++ LV+Q+ L T D
Sbjct: 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIY 309
Query: 533 --LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLL 590
L I+ A A S + L + QV+ SGG + RIA+ARA+ P +LLL
Sbjct: 310 KRLELIDAYTAEARAASILAGLSFTPEMQVKATK-TFSGGWRMRIALARALFIEPDLLLL 368
Query: 591 DEATSALD 598
DE T+ LD
Sbjct: 369 DEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+EL+++ +Y + + +D+SL G + LVG +G GKS+++ L+ EP G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1143 MIDGK 1147
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 6e-06
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 43/187 (22%)
Query: 440 RPEVRIL-NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498
R VR+L +N + T+ G+ + LVG +G GKST+++L++ G G + +
Sbjct: 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQ 65
Query: 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVAN-------------- 544
L W+ Q+ + Q PAL E ++ G D + ++E AN
Sbjct: 66 LAWVNQETPALPQ-PAL------EYVIDG--DREYRQLEAQLHDANERNDGHAIATIHGK 116
Query: 545 ------------AYSFIIKLPDGFDTQVRERGVQ-LSGGQKQRIAIARAMLKNPAILLLD 591
A S + L GF + ER V SGG + R+ +A+A++ +LLLD
Sbjct: 117 LDAIDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLD 174
Query: 592 EATSALD 598
E T+ LD
Sbjct: 175 EPTNHLD 181
|
Length = 638 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 43/272 (15%)
Query: 1064 EIEPDDPDATPVPDRLRGEV--ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSG 1121
E++ L E E+++V + D RD+S G+ L G G
Sbjct: 245 ELQNRFNAMKENVSNLAHETVFEVRNV-----TSRDRKKVRDISFSVCRGEILGFAGLVG 299
Query: 1122 CGKSSVIALVQRFYEPSSGRVMIDGKDIR-KYNLKSLRRHMAIVPQ---EPCLFAS-TIY 1176
G++ ++ + + + G + ++GKDI + L ++++ MA + + + F + +I
Sbjct: 300 SGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIA 359
Query: 1177 ENIA---------YG------HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
+N+A Y HE E E R A K S V + +
Sbjct: 360 QNMAISRSLKDGGYKGAMGLFHEV-DEQRTAENQRELLALKCHS---------VNQNITE 409
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTTIVVAHRL 1280
LSGG +Q+V I++ E+++ DE T +D ++ + + + + A GK ++V+ L
Sbjct: 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPD 1312
I I V D V G + +L N D
Sbjct: 470 PEI-----ITVCDRIAVFCEGRLTQILTNRDD 496
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 1081 GEV--ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSS-VIALVQRFYEP 1137
GEV E++++ P P I D+S R G+ L + G G G++ V L +
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR 315
Query: 1138 SSGRVMIDGKDIRKYN-LKSLRRHMAIVPQE-------PCLFASTIYENI--AYGHESAT 1187
G + IDGK ++ N +++ + +A+VP++ P + + +NI A
Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTG 372
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLD 1246
S I +AA L + I L KT E + +LSGG +Q+ +A+ + +I++LD
Sbjct: 373 GSRIDDAAELKTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD 430
Query: 1247 EATSALD 1253
E T +D
Sbjct: 431 EPTRGID 437
|
Length = 506 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 1e-05
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 36/204 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE +++ S+ R + I ++ S ++P G + ++G +G+GKST+ +I P SG +
Sbjct: 325 IEAENLSKSFGDR--LLI-DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQ-----EPALFATTIKENILLGRPDADLNEIEEAARV 542
+ G +K + V Q +P T+ E I G + E +R
Sbjct: 382 KI-GETVK----------LAYVDQSRDALDPN---KTVWEEISGGLDIIKVGNREIPSR- 426
Query: 543 ANAY--SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA-ILLLDEATSALDS 599
AY F K D Q ++ GV LSGG++ R+ +A+ LK +LLLDE T+ LD
Sbjct: 427 --AYVGRFNFKGGD----QQKKVGV-LSGGERNRLHLAK-TLKQGGNVLLLDEPTNDLDV 478
Query: 600 ESEKLVQEALDRFMIGRTTLVIAH 623
E+ + ++EAL F +VI+H
Sbjct: 479 ETLRALEEALLEF--PGCAVVISH 500
|
Length = 556 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSSGRVMIDGKDIRKYN 1153
+ I + L+L G+ A++GP+G GKS+ VIA Y+ G ++ G+ I
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA-GHPAYKILEGDILFKGESILDLE 77
Query: 1154 LKSLRRHMAIV-----PQE-PCL----FASTIYENIAYGHESATESEIIEAARLANADKF 1203
R H+ I P E P + F Y N + E + +E + N
Sbjct: 78 -PEERAHLGIFLAFQYPIEIPGVSNADFLRLAY-NSKRKFQGLPELDPLEFLEIINE--- 132
Query: 1204 ISSLPDGYKTFVGERGVQ--LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
L +F+ R V SGG+K+R I + + +E+ +LDE S LD ++ + +
Sbjct: 133 KLKLVGMDPSFL-SRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 1262 EALDR-ACSGKTTIVVAH--RLSTIRNAHVIAVIDDGKVAELGS 1302
E +++ S + I++ H RL + V+ +GK+ + G
Sbjct: 192 EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 1101 FRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY---EPSSGRVMIDGKDIRKYNLKS- 1156
FR++SL RAG+ L L G G G++ L + Y GR+M++GK+I +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINALSTAQR 335
Query: 1157 LRRHMAIVP---QEPCLF---------ASTIYENIAYGHESATESEIIEAARLANADKFI 1204
L R + +P Q L+ + + + + A E+ ++E R A KF
Sbjct: 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF- 394
Query: 1205 SSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
+ +T LSGG +Q+V IA+ +++++DE T +D
Sbjct: 395 NHAEQAART--------LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-05
Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 23/240 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L EL V +S S P V + + V G+ L+G +G+GK+T ++ TSG
Sbjct: 1940 LNELTKV-YSGTSSPAV---DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPD----ADLNEI--EEAA 540
+ G I + + + Q +G Q A+ +++L GR A L + EE
Sbjct: 1996 ATVAGKSILT-NISDVHQNMGYCPQFDAI------DDLLTGREHLYLYARLRGVPAEEIE 2048
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
+VAN + I+ G SGG K++++ A A++ P ++LLDE T+ +D +
Sbjct: 2049 KVAN---WSIQ-SLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQ 2104
Query: 601 SEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658
+ +++ + + GR ++ +H + +A++ +G+ +GT L +K +G
Sbjct: 2105 ARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDG 2164
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 567 LSGGQKQRIAIARAMLK---NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIA 622
LSGG+ QRI +A+ + K + +LDE T+ L K + E L R + G T +VI
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 623 HRLSTIRKAD 632
H L I+ AD
Sbjct: 230 HNLDVIKCAD 239
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 425 SGLI--ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482
SG I E+++V++ + +++ +FS V G IAL+G +G GK+T++ L+
Sbjct: 315 SGKIVFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371
Query: 483 TSGQV 487
SG++
Sbjct: 372 DSGRI 376
|
Length = 635 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDI---KSLKLRW 501
+L+N L + + + LVG +G+GKST++ ++ +G+VLLD I + L +
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLIVAR 70
Query: 502 LRQQ---------IGLVSQEPALFATTIKE-----NILLGRP-DADLNEIEEAARV---A 543
L+Q V++ A +K +++ P + +LNE+ +
Sbjct: 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHH 130
Query: 544 NAYSF---------IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
N + + L D + LSGG ++ A+ RA++ NP +LLLDE T
Sbjct: 131 NLWQLENRINEVLAQLGLDP--DAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPT 184
Query: 595 SALDSESEKLVQEALDRFMIGRTTLV-IAHRLSTIRK 630
+ LD E+ + ++ L F + +++ I+H S IR
Sbjct: 185 NHLDIETIEWLEGFLKTF---QGSIIFISHDRSFIRN 218
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 1222 LSGGQKQRVAIARAFVRKAE---IMLLDEATSALDAESERSVQEALDRACS-GKTTIVVA 1277
LSGG+ QR+ +A+ +++ + +LDE T+ L + + E L R G T +V+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 1278 HRLSTIRNA-HVI 1289
H L I+ A +I
Sbjct: 230 HNLDVIKCADWII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 449 FSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI-- 506
S +V AG+ + L G G+G+S ++ L+ T+GQV LDG K + +R R I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAIRA 328
Query: 507 GLV------SQEPALFATTIKENILLG------RPDADLNEIEEAARVANAYSFI----I 550
G++ E + ++ +NI + R +N EA NA FI I
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA---ENADRFIRSLNI 385
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD----SESEKLVQ 606
K P + + LSGG +Q+ + R + ++ ++LLDE T +D E ++
Sbjct: 386 KTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440
Query: 607 EALDRFMIGRTTLVIAHRL-STIRKADVVAVLQQGSVSEIGTHDE 650
E + G L ++ L + AD + V+++G ++ ++
Sbjct: 441 ELAAQ---GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502
L N + +P K + + G SGSGKS++ + Y GQ ++SL +
Sbjct: 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA--FDTIY--AEGQRRY----VESLSA-YA 58
Query: 503 RQQIGLVSQ---------EPALFATTIKENILLGRPDADLNEIEEA--------ARVA-- 543
RQ +G + + PA+ I + P + + + E ARV
Sbjct: 59 RQFLGQMDKPDVDSIEGLSPAI---AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIR 115
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN--PAILLLDEATSAL-DSE 600
F++ + G+ T R LSGG+ QRI +A + + +LDE + L +
Sbjct: 116 ERLGFLVDVGLGYLTLSRSAPT-LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD 174
Query: 601 SEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVV 634
+++L+ E L R +G T LV+ H TIR AD V
Sbjct: 175 NDRLI-ETLKRLRDLGNTVLVVEHDEDTIRAADHV 208
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
P L + R G+ L+G +G GK++ ++ +SG + GK I N+ +
Sbjct: 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVH 2011
Query: 1159 RHMAIVPQEPCL-FASTIYENI-AYGHESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
++M PQ + T E++ Y +E IE ++AN I SL G +
Sbjct: 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIE--KVANWS--IQSL--GLSLYAD 2065
Query: 1217 ERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIV 1275
SGG K++++ A A + ++LLDE T+ +D ++ R + + G+ ++
Sbjct: 2066 RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVL 2125
Query: 1276 VAHRLSTIRNAHV-IAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
+H + +A++ G LG+ HL DG M
Sbjct: 2126 TSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTM 2169
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-04
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 567 LSGGQKQRIAIARAMLK---NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIA 622
LSGG+ QR+ +A+ + K + +LDE T+ L + K + E L R + G T +VI
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 623 HRLSTIRKAD 632
H L I+ AD
Sbjct: 883 HNLDVIKTAD 892
|
Length = 935 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALV----QRFYEPSSGRVMIDG---KDIRKY 1152
I + + + G+ ++G G G S+++ + F+ G + DG ++I+K+
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 1153 NLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATE-------SEIIEAARLANADKFI 1204
R + + F T+ E + + T S A +A+
Sbjct: 136 ----YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT 191
Query: 1205 SSLPDGYKTFVGE---RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
L T VG RGV SGG+++RV+IA A + A+I D AT LD+
Sbjct: 192 YGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-04
Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGG++ R+ +AR LK +L+LDE T+ LD E+ +L++E LD + T L+++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQ--GTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-04
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 567 LSGGQKQRIAIARAMLK---NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIA 622
LSGG+ QRI +A+ + K + +LDE T+ L + K + E L R + G T +VI
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 623 HRLSTIRKAD 632
H L I+ AD
Sbjct: 890 HNLDVIKTAD 899
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 12/91 (13%)
Query: 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIM-----LLDEATSALDAESERSVQEAL-DR 1266
+ R +QLSGG+K+ A+A A + +LDE LD +++ EA+ +
Sbjct: 70 ELIFTR-LQLSGGEKELSALALIL-ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127
Query: 1267 ACSGKTTIVVAHRLSTIRNA----HVIAVID 1293
G IV+ H A H+ VI
Sbjct: 128 LVKGAQVIVITHLPELAELADKLIHIKKVIT 158
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIV-VAHRL 1280
LSGG ++ A+ RA V +++LLDE T+ LD E+ ++ L + + +I+ ++H
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLK---TFQGSIIFISHDR 213
Query: 1281 STIRN-AHVIAVIDDGKVA 1298
S IRN A I +D GK+
Sbjct: 214 SFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 565 VQLSGGQKQRIAIARAM---LKNPAIL-LLDEATSALDSESEKLVQEALDRFMI-GRTTL 619
+QLSGG+K+ A+A + P L +LDE LD + + EA+ ++ G +
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 620 VIAHRLSTIRKADVVA 635
VI H AD +
Sbjct: 136 VITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 560 VRERGVQLSGGQKQ------RIAIARAMLKNPAILLLDEATSALDSES--EKLVQ--EAL 609
+ RG + SGG+K R+A+A N IL LDE T+ LD E+ E L + E
Sbjct: 110 LDMRG-RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEER 168
Query: 610 DRFMIGRTTLVIAHRLSTIRKADVV 634
+VI H + AD +
Sbjct: 169 KSQKN-FQLIVITHDEELVDAADHI 192
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 1066 EPDDPDATPV--PDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123
EPD+P A + R + L + SY RP I +LS + G+ +VGP+G G
Sbjct: 244 EPDEPSARHALPANEPR--IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAG 298
Query: 1124 KSSVIALV 1131
KS++++L+
Sbjct: 299 KSTLLSLI 306
|
Length = 490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 63/259 (24%)
Query: 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR-----KYNLKSLRRHMAIVP 1165
G + L+G +G GKS++I L+ P SG + + K I+ ++ L+ LR
Sbjct: 338 GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIKLGYFAQHQLEFLR------- 389
Query: 1166 QEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTF------VGERG 1219
A ES + ARLA + L D F V E
Sbjct: 390 --------------------ADESPLQHLARLA-PQELEQKLRDYLGGFGFQGDKVTEET 428
Query: 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEAL---DRACSGKTTIVV 1276
+ SGG+K R+ +A ++ ++LLDE T+ LD + +++ EAL + A +VV
Sbjct: 429 RRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA-----LVVV 483
Query: 1277 AHRLSTIRN-AHVIAVIDDGKVA----ELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIG 1331
+H +R+ + ++ DGKV +L + L + +Q Q +
Sbjct: 484 SHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSD---------VQKQENQTDEAPK 534
Query: 1332 MTSGSSSSARPKDDEEREA 1350
+ +S+ AR KD + REA
Sbjct: 535 ENNANSAQAR-KDQKRREA 552
|
Length = 638 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 1222 LSGGQKQRVAIARAFVRKAE---IMLLDEATSALDAESERSVQEALDRACS-GKTTIVVA 1277
LSGG+ QRV +A+ +++ + +LDE T+ L + + + E L R G T IV+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1278 HRLSTIRNA-HVI 1289
H L I+ A +I
Sbjct: 883 HNLDVIKTADWII 895
|
Length = 935 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 51/203 (25%)
Query: 1115 ALVGPSGCGKSSVI-ALVQRFY---EPSSGRVMIDGKDIR--------KYNLKSLRRHMA 1162
+VG +G GK+++I AL P+S D K IR K ++
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKY 85
Query: 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222
+ + I EN+ + H+ + L D RG +
Sbjct: 86 TITRSL-----AILENVIFCHQ----------------GESNWPLLD-------MRG-RC 116
Query: 1223 SGGQKQ------RVAIARAFVRKAEIMLLDEATSALDAES-ERSVQEALDRACSGKT--T 1273
SGG+K R+A+A F I+ LDE T+ LD E+ E S+ E ++ S K
Sbjct: 117 SGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQL 176
Query: 1274 IVVAHRLSTIRNA-HVIAVIDDG 1295
IV+ H + A H+ V DG
Sbjct: 177 IVITHDEELVDAADHIYRVEKDG 199
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 58/199 (29%), Positives = 85/199 (42%), Gaps = 63/199 (31%)
Query: 1115 ALVGPSGCGKSSVI-ALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-HMAIVPQEPCLFA 1172
A+VGP+G GKS++I A+ R+ V+ G+ + KSLR M+ V +FA
Sbjct: 26 AIVGPNGSGKSNIIDAI--RW-------VL--GEQ----SAKSLRGEKMSDV-----IFA 65
Query: 1173 ST-------------IYENIAYGH---ESATESEIIEAARLANADKFISSLPDGYKTFVG 1216
+ ++N + SEIIEA K + L
Sbjct: 66 GSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEAP-----GKKVQRLS-------- 112
Query: 1217 ERGVQLSGGQKQRVAIARAF----VRKAEIMLLDEATSALD-AESERSVQEALDRACSGK 1271
LSGG+K A+A F VR + +LDE +ALD A ER + L + S +
Sbjct: 113 ----LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR--LLKEFSKE 166
Query: 1272 T-TIVVAHRLSTIRNAHVI 1289
T IV+ HR T+ A +
Sbjct: 167 TQFIVITHRKGTMEAADRL 185
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRL 625
LS Q++R+ IA ++ NP+I+ +DE TS LD+ + +V + + GRT + H+
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079
Query: 626 S 626
S
Sbjct: 1080 S 1080
|
Length = 1470 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
LSGG +Q++ I R +L P IL+LDE T +D
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
|
Length = 491 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.004
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 1221 QLSGGQKQRVAIARAF----VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVV 1276
LSGG+K A+A F R A +LDE +ALD + V + IV+
Sbjct: 1066 LLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVI 1125
Query: 1277 AHRLSTIRNAHVI 1289
HR T+ A +
Sbjct: 1126 THRKGTMEAADRL 1138
|
Length = 1163 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1350 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-225 Score=2068.77 Aligned_cols=1216 Identities=51% Similarity=0.855 Sum_probs=1121.1
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 86 PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
.+++..+++|..+.++.++++|++++++.++..|++..++++++|.+..... . ...+.+..+++++++++++.+++.|
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~ 89 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF 89 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999998865332 1 2224667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
++..||.+.++|+..++|.++++.++|++++|||.+ .+|++.+++++|++.|+++++++++.+++.+.+++++++++|+
T Consensus 90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7799999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~ 325 (1350)
..|+|+++++.+.|++++....+.+.+.+...+.+.+++++.++++|++++||||.+|+.|+++.++|.+.++..++.+.
T Consensus 169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi 248 (1228)
T KOG0055|consen 169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI 248 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405 (1350)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 405 (1350)
+.+.+.++..+++.++.++++++.+|||+.++.++..++|.++++++++++....+++..+.+..+.++++|+.+|++++
T Consensus 249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i 328 (1228)
T KOG0055|consen 249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI 328 (1228)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000689 406 DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 485 (1350)
+..|++++....+......+|.|+|+||+|+||+||+.++|+|+||+|++|+++||||||||||||+++||.|||+|++|
T Consensus 329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G 408 (1228)
T KOG0055|consen 329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG 408 (1228)
T ss_pred cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence 99998876543344455678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCC
Q 000689 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565 (1350)
Q Consensus 486 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~ 565 (1350)
+|++||.|+++++.+|+|++||+|+|||.||++||+|||+||+|+++.+++++|||++++++||..||+||+|.+||+|.
T Consensus 409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000689 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 566 ~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 645 (1350)
+|||||||||||||||++||+||||||||||||+++|+.||++|+++++|||+|+|||||+++++||+|+||++|+|+|.
T Consensus 489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCccccccc
Q 000689 646 GTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLD 725 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1350)
|+|+||++. .|.|.+|++.|+........+.+.+..+ ....+. .... ...+..+.. .. ..... ...+
T Consensus 569 G~h~ELi~~--~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~--~~~~s~-~~s~-~~~~~~~~~-~~-----~~~~~-~~~~ 635 (1228)
T KOG0055|consen 569 GTHDELIAL--GGIYSSLVRLQELEKAAEDEEEEESLKE--ERSRSL-KSSS-SSPSLSRGS-NR-----SNLLS-VKPE 635 (1228)
T ss_pred cCHHHHHhc--cchHHHHHHHHhhhhhhhccccccchhh--hhhhcc-cccc-ccccccCCc-cc-----ccccc-cccc
Confidence 999999998 5999999999976543221000000000 000000 0000 000000000 00 00000 0000
Q ss_pred CCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 000689 726 ATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805 (1350)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1350)
.++..+.......+.++++++++++|+|+++++|++++++.|+..|++++.++.++..++.++.+.+......|+++
T Consensus 636 ---~e~~~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~ 712 (1228)
T KOG0055|consen 636 ---GEDPEEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALI 712 (1228)
T ss_pred ---ccccccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 00000000111256789999999999999999999999999999999999999999999977766666666669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000689 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQ 885 (1350)
Q Consensus 806 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~ 885 (1350)
|++++++.+++.++++++|.++|++++.++|.++|+++++++++|||.++|. |+|.+|+++|+.+++..+++.+..+++
T Consensus 713 f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~ 791 (1228)
T KOG0055|consen 713 FLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQ 791 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHH
Q 000689 886 NTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVG 965 (1350)
Q Consensus 886 ~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~ 965 (1350)
++..+++++++.|+++|+|++++++++|++++..+.+.+++.....+.++.+.++...+.|+++|++||++|++|+++.+
T Consensus 792 ~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~ 871 (1228)
T KOG0055|consen 792 NIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFME 871 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 966 LFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 1045 (1350)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1350)
.|.+.++.+.+...+.+.+.++.+++++++.|+++++.+|||.+|+.+|.+++..++.+++++.+.+..+.+...+.|++
T Consensus 872 ~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~ 951 (1228)
T KOG0055|consen 872 LYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDI 951 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHH
Q 000689 1046 IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKS 1125 (1350)
Q Consensus 1046 ~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKS 1125 (1350)
.++..++.+++++++++++.+++.+.+ ..+++.+|+|+|+||+|+||+||+.+||+|+||+|++||+||||||||||||
T Consensus 952 ~ka~~Aa~~iF~i~dr~~~i~~~~~~~-~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 952 SKAKIAAGSIFEILDRKPTIDPDSTSG-GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCC-CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHH
Confidence 999999999999999999877654222 2334688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHh
Q 000689 1126 SVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFIS 1205 (1350)
Q Consensus 1126 TL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~ 1205 (1350)
|++.||.|||||.+|.|.|||+||+++++++||++||+|.|||.||++||||||.||.++++++||.+||+.||+|+||.
T Consensus 1031 TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~ 1110 (1228)
T KOG0055|consen 1031 TVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS 1110 (1228)
T ss_pred HHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999966699999999999999999999
Q ss_pred cCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh
Q 000689 1206 SLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN 1285 (1350)
Q Consensus 1206 ~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~ 1285 (1350)
+||+||||.|||+|.+||||||||||||||++||||||||||||||||+++|+.||++|+++..|||+|+|||||+||++
T Consensus 1111 sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn 1190 (1228)
T KOG0055|consen 1111 SLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN 1190 (1228)
T ss_pred cCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhh
Q 000689 1286 AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324 (1350)
Q Consensus 1286 ~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1324 (1350)
||.|+|+++|+|+|+|||++|+++ +|.|++|++.|..
T Consensus 1191 aD~I~Vi~~G~VvE~GtH~~L~~~--~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1191 ADVIAVLKNGKVVEQGTHDELLAK--RGIYFRLVQLQSS 1227 (1228)
T ss_pred CCEEEEEECCEEEecccHHHHHhC--CCchHHHhhhccC
Confidence 999999999999999999999986 8999999998854
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-176 Score=1757.33 Aligned_cols=1221 Identities=28% Similarity=0.481 Sum_probs=1023.5
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 85 TPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASS 164 (1350)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1350)
.++++..+|+|..+.++.+++++++++++.+++.|++|++++.++|.+... + .+..+++++++++++.+++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~----~----~~~~~~~~~~~~~i~~~~~~ 114 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG----E----NVNDIIFSLVLIGIFQFILS 114 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c----hHHHHHHHHHHHHHHHHHHH
Confidence 567899999999888888889999999999999999999999999976421 1 12223455666777788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 165 WAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGF 244 (1350)
Q Consensus 165 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1350)
+++.+++.++++++..++|.++|++++++|++|||+. ++|++++++++|++.+++.+...+..++..+++++++++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 000689 245 SAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLG 324 (1350)
Q Consensus 245 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~ 324 (1350)
+++|+|++++++++|+++++..++.+++++..++.++..++.++.+.|+++||++||+|+.|+.+.++|.+..+.+.+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 325 YKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHH--------FTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKV 396 (1350)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1350)
.+.....++..++..++.++++++++|+|++++.+| .+++|.+++++++.+.....+..+.+.+..++++.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999889999888999999999999999886 578899988877777766677778888899999999
Q ss_pred HHHHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 000689 397 AAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI 476 (1350)
Q Consensus 397 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll 476 (1350)
|++||+++++.++++++ ...+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus 354 a~~ri~~ii~~~~~~~~-~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVEN-NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred HHHHHHHHHcCCCCCCC-CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999998776542 112222222 2479999999999865555799999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEE-CCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCC--------------------------
Q 000689 477 ERFYDPTSGQVLL-DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP-------------------------- 529 (1350)
Q Consensus 477 ~~~~~~~~G~i~i-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-------------------------- 529 (1350)
+|+|+|++|+|++ ||+++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1466)
T PTZ00265 432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR 511 (1466)
T ss_pred HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence 9999999999999 5799999999999999999999999999999999999742
Q ss_pred -------------------------------CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 530 -------------------------------DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 530 -------------------------------~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
+.++++++++++.+++++|+.+||+||||.+|++|.+|||||||||+||
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA 591 (1466)
T PTZ00265 512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591 (1466)
T ss_pred ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence 2456789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCC----------------
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQG---------------- 640 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G---------------- 640 (1350)
|||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 99999999999999999999999999999999986 489999999999999999999999986
Q ss_pred -------------------------------EEEEecChHHHHhccCCcHHHHHHHHHHHhhHhhhhh--cccCCCCCCc
Q 000689 641 -------------------------------SVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNN--ARKSSARPSS 687 (1350)
Q Consensus 641 -------------------------------~i~~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~~~ 687 (1350)
+|+|+|+|+||++. .+|.|+.|++.|.......... ......+...
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~-~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~ 750 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKN-KNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSA 750 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhc-cCCcHHHHHhhhcccccccccccccccccccccc
Confidence 59999999999973 2799999998775432111000 0000000000
Q ss_pred ccCCCCCcccccC-CCC-CCCCccccccCCccCcccccccCCCCchhh---hhh-hh-hhhhHHHHHHHHhcchhHHHHH
Q 000689 688 ARNSVSSPIIARN-SSY-GRSPYSRRLSDFSTSDFSLSLDATYPSYRH---EKL-AF-KEQASSFWRLAKMNSPEWVYAL 760 (1350)
Q Consensus 688 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 760 (1350)
............ ... ........ ..................... ++. .. ......+++++++.++.+..++
T Consensus 751 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 751 -YKDSERGYDPDEMNGNSKHENESAS-NKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred -ccccccccccccccccccccccccc-cccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000000 000 00000000 000000000000000000000 000 00 0011134445555556666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 761 VGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKML 840 (1350)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 840 (1350)
++++++++.+++.|+++++++.+++.++... ........|++++++++++.+++.+++.+++.++++++..++|..+|
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf 906 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLF 906 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998765321 12234556788888888899999999999999999999999999999
Q ss_pred HHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 841 AAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATV 920 (1350)
Q Consensus 841 ~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~ 920 (1350)
++++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|++++++++++|++.....
T Consensus 907 ~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 986 (1466)
T PTZ00265 907 ENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFA 986 (1466)
T ss_pred HHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987799999999999999999999999999999999999999999999999998887655544433322
Q ss_pred HHHHHHhhHh-H-H-------------HHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 921 LQKMFMKGFS-G-D-------------MEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIA 985 (1350)
Q Consensus 921 ~~~~~~~~~~-~-~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (1350)
...+...... + . .++........++|++.|++|||+|+.|+++.++|.+..+...+...+...+.
T Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1466)
T PTZ00265 987 IRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVN 1066 (1466)
T ss_pred HHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111100 0 0 12234566789999999999999999999999999999999988888888889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000689 986 GSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEI 1065 (1350)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~ 1065 (1350)
+..+++++++.++.+++++|+|++++..|.++++.++.++.++++...++..+....+++.++..+++|++++++.+++.
T Consensus 1067 ~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~ 1146 (1466)
T PTZ00265 1067 SMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNI 1146 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999988877776666677888899999999999999999999887644
Q ss_pred CCCCCCCCC--CCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC------
Q 000689 1066 EPDDPDATP--VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP------ 1137 (1350)
Q Consensus 1066 ~~~~~~~~~--~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p------ 1137 (1350)
+..+..... .++...|.|+|+||+|+||++|+.+||+|+||+|+|||+|||||+||||||||+++|+|||+|
T Consensus 1147 ~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~ 1226 (1466)
T PTZ00265 1147 DVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHI 1226 (1466)
T ss_pred CCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccc
Confidence 221111111 112346889999999999987767899999999999999999999999999999999999999
Q ss_pred ------------------------------------------------CccEEEECCccCCCCCHHHhhcccEEEccCCc
Q 000689 1138 ------------------------------------------------SSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC 1169 (1350)
Q Consensus 1138 ------------------------------------------------~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~ 1169 (1350)
++|+|+|||+||+++++++||++|+||||||+
T Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~ 1306 (1466)
T PTZ00265 1227 VFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM 1306 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc
Confidence 69999999999999999999999999999999
Q ss_pred cCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 000689 1170 LFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249 (1350)
Q Consensus 1170 LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaT 1249 (1350)
||+|||||||.||.++++|+|+++||+.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+||||||||
T Consensus 1307 LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaT 1386 (1466)
T PTZ00265 1307 LFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEAT 1386 (1466)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeC----CeE-EEecChhHHhhcCCCchhHHHHHHh
Q 000689 1250 SALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDD----GKV-AELGSHSHLLKNNPDGCYARMIQLQ 1322 (1350)
Q Consensus 1250 SaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~----GrI-vE~Gt~~eLl~~~~~g~y~~l~~~q 1322 (1350)
|+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|+|+|+||+++ .+|.|++||+.|
T Consensus 1387 SaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~-~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV-QDGVYKKYVKLA 1465 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc-CCChHHHHHhhc
Confidence 9999999999999999874 69999999999999999999999999 995 499999999974 289999999876
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-166 Score=1584.95 Aligned_cols=1094 Identities=24% Similarity=0.326 Sum_probs=867.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 172 MWTGERQSIKMRIK----YLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAV 247 (1350)
Q Consensus 172 ~~~~~~~~~~lR~~----~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1350)
.+...++..++|.. +|+|.++++..--... ++|+++|.+++|++++.++. .+++.+|.....++++.++-
T Consensus 263 ~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~-t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~lL 336 (1381)
T KOG0054|consen 263 FFVSFRVGMRLRSALISAIYRKALRLSNSARGET-TVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYLL 336 (1381)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCC-CcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777765 6778888877765455 89999999999999999875 67888898888888888777
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 000689 248 WQL----ALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRL 323 (1350)
Q Consensus 248 ~~l----~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~ 323 (1350)
|.+ +++.++++.+++.+..+++++.+++..+..+..+++...++|.++|||+||.|+||+.+.++.++..++..+.
T Consensus 337 y~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~ 416 (1381)
T KOG0054|consen 337 YGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKL 416 (1381)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 765 2344444455555667778888888999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 324 GYKSGFAKGMGLGATYFVVFCSYALLLWYGGYL-VRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIF 402 (1350)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 402 (1350)
-.|.....++...+..+...+.. .+.++.+. ...+.+++...++.+..+.....|+..++..+..+.++.+|.+|+.
T Consensus 417 lrk~~~~~~~~~~~~~~~p~lv~--~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~ 494 (1381)
T KOG0054|consen 417 LRKSAYLSALNSFLNFFSPVLVS--VVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLK 494 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665554443333322 23344444 4567788888888877777778899999999999999999999999
Q ss_pred HHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000689 403 RIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 482 (1350)
+++..++. ++......+..+.+..|+++|.+|+|+.....+.|+||||+|++|+.+||||+.|||||+|+++|+|+++.
T Consensus 495 ~fl~~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~ 573 (1381)
T KOG0054|consen 495 EFLLSEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK 573 (1381)
T ss_pred HHhcCccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc
Confidence 99987543 22111101222233469999999999763344699999999999999999999999999999999999999
Q ss_pred CCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcC
Q 000689 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRE 562 (1350)
Q Consensus 483 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~ 562 (1350)
.+|++.++| .++||||+||+|+|||||||+||.| .+.+.++++.+.|.+..+++.||.|+.|.|||
T Consensus 574 ~sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE 639 (1381)
T KOG0054|consen 574 LSGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGE 639 (1381)
T ss_pred ccceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecC
Confidence 999999999 4999999999999999999999987 67889999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHH-HHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000689 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL-VQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGS 641 (1350)
Q Consensus 563 ~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~-i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 641 (1350)
+|.+|||||||||+||||+|+|+||++||||+||+|+++.++ +.++|+.+.++||+|+|||.++++++||+|++|+||+
T Consensus 640 rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGK 719 (1381)
T ss_pred CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCe
Confidence 999999999999999999999999999999999999997655 5567877788999999999999999999999999999
Q ss_pred EEEecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCccc
Q 000689 642 VSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFS 721 (1350)
Q Consensus 642 i~~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1350)
|++.|+|+||++. .+.|.++......+.... ......+.. ...... . . ..... . . ...+.
T Consensus 720 I~~~Gty~el~~~--~~~~~~l~~~~~~~~~~~---~~~~~~~~~---~~~~~~--~-~-~~~~~---~---~-~~~~~- 779 (1381)
T KOG0054|consen 720 IVESGTYEELLKS--GGDFAELAHEEESEQEEE---ASEKDLESG---ESSRES--E-S-RSLES---L---S-SEEEK- 779 (1381)
T ss_pred EecccCHHHHHhc--chhHHHHhhccchhhccc---ccccccccc---ccccch--h-h-hhhhh---h---c-ccccc-
Confidence 9999999999987 677777733222111110 000000000 000000 0 0 00000 0 0 00000
Q ss_pred ccccCCCCchhh-hhhhhhhhhHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Q 000689 722 LSLDATYPSYRH-EKLAFKEQASSFWRLAKMNSPEWVY--ALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIRE 798 (1350)
Q Consensus 722 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1350)
..+....+.+. ..+....+..++..|+.|.+..+.+ ..+.+++.++...+.....+|+++|.+.-...... ...
T Consensus 780 -~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~ 856 (1381)
T KOG0054|consen 780 -SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVS 856 (1381)
T ss_pred -cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCC
Confidence 00000000000 0111133444455555554442222 22223333333444555566666665432111100 023
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHH
Q 000689 799 IAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGD 878 (1350)
Q Consensus 799 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~ 878 (1350)
...|.++|.+++++..++..++++.+...+.++++++|++|+++++|+||+|||. +|+|||+|||++|++.+|..+|.
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~ 934 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPF 934 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHH
Confidence 4578899999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH----HHHHHHHHHHccHHHH
Q 000689 879 RIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHS----KATQLAGEAIGNVRTV 954 (1350)
Q Consensus 879 ~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~l~gi~tI 954 (1350)
.+..++++++.+++.++++.+..|+ ++++++|+.+++++++++|.++ +|++++..+ ...+|++|++.|+.||
T Consensus 935 ~~~~~~~~~~~~l~~~~vi~~~~P~---fli~~~pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTI 1010 (1381)
T KOG0054|consen 935 TLEFFLQSLLNVLGILVVISYVTPW---FLIAIIPLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTI 1010 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHH---HHHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCccee
Confidence 9999999999999999999888885 5677888888888998888887 788888664 4568999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 000689 955 AAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANG 1034 (1350)
Q Consensus 955 ra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 1034 (1350)
|||+.+++|.+++..++|.+.+..+. ......|+++..-+....+.+...+...+...+..++|.+...+.+.+.....
T Consensus 1011 RAf~~~~rf~~~~~~~~D~~~~~~f~-~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~ 1089 (1381)
T KOG0054|consen 1011 RAFGKEERFIQENDELIDENSRAFFL-SISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGL 1089 (1381)
T ss_pred eeccccHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999998876443 33344455544333332222222222222223324556555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCC--CCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCC
Q 000689 1035 AAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDA--TPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGK 1112 (1350)
Q Consensus 1035 ~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge 1112 (1350)
+.-.+....+.+..+.+++|+.++.+.++| .|...+. .++.||..|+|+|+|++.||.++ .++|||||||+|+|||
T Consensus 1090 l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1090 LQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCc
Confidence 666777788889999999999999998877 3332222 23446789999999999999754 3579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHH
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEII 1192 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~ 1192 (1350)
|||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||||..+ ++|+|||
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e-~sD~~IW 1246 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDE-YSDDEIW 1246 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccc-cCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864 9999999
Q ss_pred HHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCce
Q 000689 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKT 1272 (1350)
Q Consensus 1193 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~T 1272 (1350)
+|+++|+++++|.++|+|||++|.|+|.|||.||||++||||||||++|||+||||||++|++|+..||++||+.|++||
T Consensus 1247 ~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcT 1326 (1381)
T KOG0054|consen 1247 EALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCT 1326 (1381)
T ss_pred HHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHh
Q 000689 1273 TIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322 (1350)
Q Consensus 1273 vI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q 1322 (1350)
||+||||++||.|||||+|||+|+|+|+|+|++|+++ +++.|++++...
T Consensus 1327 VltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~-~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1327 VLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD-KDSLFSSLLKEA 1375 (1381)
T ss_pred EEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC-CcchHHHHHHHH
Confidence 9999999999999999999999999999999999998 589998776643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-157 Score=1593.84 Aligned_cols=1156 Identities=20% Similarity=0.261 Sum_probs=849.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000689 105 AIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISC--WMWTGERQSIKM 182 (1350)
Q Consensus 105 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 182 (1350)
++++++.++..++....|+++..+++.+..... . . .... +++.+++..++..+ +...+. ...++.++-..+
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~--~-~-~~~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~ir~~L 376 (1622)
T PLN03130 304 WLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP--A-W-IGYI-YAFSIFVGVVLGVL--CEAQYFQNVMRVGFRLRSTL 376 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-h-HHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666678888876543211 1 1 1111 11111111111111 111121 346777777788
Q ss_pred HHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000689 183 RIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIA 262 (1350)
Q Consensus 183 R~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 262 (1350)
+..+|+|+++++..++++. ++|+++|++++|++.+++++. .+..++..++.+++++++++..-...+++.++++.+.+
T Consensus 377 ~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 377 VAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 999999999999999999873 34445555555444444333211111222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 263 VIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVV 342 (1350)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1350)
.+..++.++.++..++..+..++..+.+.|.++||++||+|++|+.+.+++.+..++..+...+.....++...+...+.
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP 534 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888889999999999999999999999999999999998888777666666555544333322211
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCC
Q 000689 343 FCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELD 422 (1350)
Q Consensus 343 ~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 422 (1350)
..+.++++|++++.+|.+++|.+++++.++.....|+..++..+..+.+++++++||.++++.++..+. . . ....
T Consensus 535 --~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~-~-~~~~ 609 (1622)
T PLN03130 535 --VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-P-N-PPLE 609 (1622)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-C-Cccc
Confidence 134566789999999999999999988888788889999999999999999999999999986543211 0 1 0111
Q ss_pred CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEECCeeCCCCCHHH
Q 000689 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS-GQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 423 ~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~i~g~~~~~~~~~~ 501 (1350)
...+.|+++|++|+|++++++++|+|+||+|++|++++||||||||||||+++|+|+++|++ |+|.+.
T Consensus 610 ~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~----------- 678 (1622)
T PLN03130 610 PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR----------- 678 (1622)
T ss_pred CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc-----------
Confidence 12346999999999985444679999999999999999999999999999999999999999 999864
Q ss_pred HhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
.+|+||+|+||||++||||||+||.| .++++++++++.|++++++..||+|++|.+||+|.+|||||||||+||||+
T Consensus 679 --~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 679 --GTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred --CeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999987 578999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHH-HHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHH
Q 000689 582 LKNPAILLLDEATSALDSESEKLV-QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVY 660 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y 660 (1350)
|++|+||||||||||||+++++.+ .++++...+++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++ ++.|
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~--~~~~ 833 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN--GPLF 833 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc--chhH
Confidence 999999999999999999998876 4667777789999999999999999999999999999999999999976 6888
Q ss_pred HHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhhhhh
Q 000689 661 AKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKE 740 (1350)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1350)
++++..+....+.... . ..... ... . ..+. ...... ....... .... .. ....... ..++...
T Consensus 834 ~~l~~~~~~~~~~~~~-~--~~~~~-~~~-~-~~~~--~~~~~~--~~~~~~~---~~~~-~~-~~~~~~~--~~e~~~~ 896 (1622)
T PLN03130 834 QKLMENAGKMEEYVEE-N--GEEED-DQT-S-SKPV--ANGNAN--NLKKDSS---SKKK-SK-EGKSVLI--KQEERET 896 (1622)
T ss_pred HHHHHhcccccccccc-c--ccccc-ccc-c-cccc--cccccc--ccccccc---cccc-cc-ccchhhh--hHHHHhc
Confidence 8887654321110000 0 00000 000 0 0000 000000 0000000 0000 00 0000000 0011122
Q ss_pred hhHHHHHHHHhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 741 QASSFWRLAKMNSP--EWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNT 818 (1350)
Q Consensus 741 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 818 (1350)
+...+..+.+|.+. .++.+.+.+++.++..++.....+|++.|.+...... .....|.++|++++++..++.+
T Consensus 897 g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~-----~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 897 GVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKT-----HGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred CccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----CchhHHHHHHHHHHHHHHHHHH
Confidence 33334444444332 1122222222223333333444556665554321111 1124567778888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 819 LQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGF 898 (1350)
Q Consensus 819 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~ 898 (1350)
++.+++.+.+.+++.++|.++|++++++|++|||+ +++|+++|||++|++.++..++..+..++..++.+++.+++++
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996 8999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH----HHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHH
Q 000689 899 VLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEA----AHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTP 974 (1350)
Q Consensus 899 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 974 (1350)
+++|.. +++++|+.++++.++.++.+. .++.++ ..++..+++.|+++|++|||+|+.++++.+.+.+..+..
T Consensus 1050 ~~~~~~---~~~~~pl~~~~~~~~~~~~~~-~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~ 1125 (1622)
T PLN03130 1050 IVSTIS---LWAIMPLLVLFYGAYLYYQST-AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN 1125 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 877743 334455554444444444333 333333 345667899999999999999999999998888887776
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 975 LRRCFWKGQIAGSGYGVAQFCLYASYALGLWYS-SWLVKHGI-SD-----FSKTIRVFMVLMVSANGAAETLTLAPDFIK 1047 (1350)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1350)
.+..+.... ...+.++... +..++.++++ ...+..+. .. .+.+...+.........+..+......++.
T Consensus 1126 ~~~~~~~~~-~~~wl~~~l~---~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1126 IRFTLVNMS-SNRWLAIRLE---TLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred HHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654433221 1222222111 1112222222 22233221 11 111111122222233344445555667788
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCCC-CCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHH
Q 000689 1048 GGRAMRSVFDLLDRKTEIEPDDPDAT-PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSS 1126 (1350)
Q Consensus 1048 ~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKST 1126 (1350)
.+.+++|+.++++.++|.+....... +..++..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999987766432111111 1123457899999999999643 247999999999999999999999999999
Q ss_pred HHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhc
Q 000689 1127 VIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISS 1206 (1350)
Q Consensus 1127 L~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~ 1206 (1350)
|+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||+|++ +++|+|+|+|++.+++++||.+
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 5899999999999999999999
Q ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhc
Q 000689 1207 LPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNA 1286 (1350)
Q Consensus 1207 lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~ 1286 (1350)
+|+||||+|||+|.+|||||||||||||||||+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhhc
Q 000689 1287 HVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1287 DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
|||+||++|+|+|+|+|++|+++ ++|.|++|++.+...
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~-~~g~f~~L~~~~~~~ 1477 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSN-EGSAFSKMVQSTGAA 1477 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhC-CCCHHHHHHHHcChh
Confidence 99999999999999999999987 479999999875443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-156 Score=1588.77 Aligned_cols=1154 Identities=20% Similarity=0.242 Sum_probs=852.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 105 AIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRI 184 (1350)
Q Consensus 105 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 184 (1350)
+++.++.++..++....|++++.+++.+.... .. . .. ..+++.+++..++..++.....+...+.+.++...++.
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~~-~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~ 378 (1495)
T PLN03232 304 WLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--PA-W-VG-YVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVA 378 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc-c-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666566667888888664321 11 1 11 11111111111111121111112234677777788888
Q ss_pred HHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HH
Q 000689 185 KYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVP---LI 261 (1350)
Q Consensus 185 ~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~p---l~ 261 (1350)
.+|+|+++++..++++. ++|+++|++++|++.+++.+ ..+..++..++.+++++++ +.+.+++.+++.++ ++
T Consensus 379 ~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~---l~~~lg~~~l~~~~v~~l~ 453 (1495)
T PLN03232 379 AIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVL---LYQQLGVASLFGSLILFLL 453 (1495)
T ss_pred HHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 99999999999999888 89999999999999999975 3333444333333333322 22234433332222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 262 AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFV 341 (1350)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1350)
+.+..++.++.++..++.++..++..+.+.|.++||++||+|++|+.+.+++++..++..+...+.....++...+....
T Consensus 454 ~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1495)
T PLN03232 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI 533 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22355677888888889999999999999999999999999999999999999988887777777666555443322221
Q ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccC
Q 000689 342 VFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLEL 421 (1350)
Q Consensus 342 ~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 421 (1350)
...+.++++|++++.+|.+++|.+++++.++.....|+..++..+..+.+++++++||.++++.+++.+.. . ...
T Consensus 534 --~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~--~-~~~ 608 (1495)
T PLN03232 534 --PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQ--N-PPL 608 (1495)
T ss_pred --HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc--c-CCc
Confidence 12333578899999999999999999988888888899999999999999999999999999876542211 1 111
Q ss_pred CCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH
Q 000689 422 DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 422 ~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~ 501 (1350)
....+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+. +
T Consensus 609 ~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~ 676 (1495)
T PLN03232 609 QPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------V 676 (1495)
T ss_pred CCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------E
Confidence 1123469999999999854446799999999999999999999999999999999999999998763 3
Q ss_pred HhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+|++|+||+|+||||++||||||+||++ .++++++++++.|++++++..||+|++|.+||+|.+|||||||||+||||+
T Consensus 677 ~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 677 IRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred ecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 5678999999999999999999999986 688999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHH-HHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHH
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQE-ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVY 660 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y 660 (1350)
|++|+||||||||||||+++++.+.+ +++...+++|+|+||||+++++.||+|++|++|+|+++|+|+||+++ ++.|
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~--~~~~ 833 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS--GSLF 833 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc--chhH
Confidence 99999999999999999999987754 56766789999999999999999999999999999999999999986 7889
Q ss_pred HHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhhhhh
Q 000689 661 AKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKE 740 (1350)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1350)
+++++.+....+.... .+ ........ .+. ....... .... ... . .........+.++...
T Consensus 834 ~~l~~~~~~~~~~~~~-~~----~~~~~~~~--~~~----~~~~~~~--~~~~---~~~---~-~~~~~~~~~~~e~~~~ 893 (1495)
T PLN03232 834 KKLMENAGKMDATQEV-NT----NDENILKL--GPT----VTIDVSE--RNLG---STK---Q-GKRGRSVLVKQEERET 893 (1495)
T ss_pred HHHHHhcccccccccc-cc----cccccccc--ccc----ccccccc--cccc---ccc---c-cccchhhhhhHHHHhc
Confidence 8887654321110000 00 00000000 000 0000000 0000 000 0 0000000000111122
Q ss_pred hhHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 741 QASSFWRLAKMNSPE--WVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNT 818 (1350)
Q Consensus 741 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 818 (1350)
+...+..+++|.+.. ++.+.+.+++.++..++.....+|++.|.+.... . ......|+.+|++++++..++.+
T Consensus 894 g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~----~~~~~~~l~~y~~l~~~~~~~~~ 968 (1495)
T PLN03232 894 GIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP-K----SYSPGFYIVVYALLGFGQVAVTF 968 (1495)
T ss_pred CcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-C----CCCcchHHHHHHHHHHHHHHHHH
Confidence 333444455554432 1222222222222233333344555544331100 0 11134678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 819 LQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGF 898 (1350)
Q Consensus 819 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~ 898 (1350)
++.+++.+.+.+++.++|++++++++++|++|||+ +++|+++||+++|++.++..++..+..++..++.+++.+++++
T Consensus 969 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~ 1046 (1495)
T PLN03232 969 TNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIG 1046 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 8999999999999999999999999999988888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000689 899 VLQWRLALVLIAVFPVVVAATVLQKMFMKG---FSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975 (1350)
Q Consensus 899 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~ 975 (1350)
+.+|.. +++++|+.++++..+.++.+. ..+......+...+++.|++.|++|||+|+.++++.+.+.+..+...
T Consensus 1047 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~ 1123 (1495)
T PLN03232 1047 TVSTIS---LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNI 1123 (1495)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 766533 333345554444444444332 22333344456678999999999999999999999988888877766
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHH-cCCC----CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 976 RRCFWKGQIAGSGYGVAQFCLYASYALGLWY-SSWLVK-HGIS----DFSKTIR-VFMVLMVSANGAAETLTLAPDFIKG 1048 (1350)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~g~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1350)
+..+.... ...|.++... .+. ++.+++ +...+. .+.+ .+...+. ++.+......++..+.....+++.+
T Consensus 1124 ~~~~~~~~-~~~wl~~~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~ 1199 (1495)
T PLN03232 1124 RFTLANTS-SNRWLTIRLE--TLG-GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENS 1199 (1495)
T ss_pred HHHHHHHH-HHHHHHHHHH--HHH-HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443221 1222222211 111 222233 333332 2322 1122222 2222223334556666777888899
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCC-CCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHH
Q 000689 1049 GRAMRSVFDLLDRKTEIEPDDPDAT-PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSV 1127 (1350)
Q Consensus 1049 ~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL 1127 (1350)
..+++|+.++++.++|.+....... +..++..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||
T Consensus 1200 ~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL 1278 (1495)
T PLN03232 1200 LNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM 1278 (1495)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHH
Confidence 9999999999987766432111111 1113456899999999999643 2479999999999999999999999999999
Q ss_pred HHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcC
Q 000689 1128 IALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSL 1207 (1350)
Q Consensus 1128 ~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~l 1207 (1350)
+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++++ +++|+|+|+|++.++++++|+++
T Consensus 1279 ~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1279 LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999986 69999999999999999999999
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcC
Q 000689 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAH 1287 (1350)
Q Consensus 1208 p~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~D 1287 (1350)
|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhhc
Q 000689 1288 VIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1288 rI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
||+||++|+|+|+|+|+||+++ ++|.|++|++.+...
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTGPA 1474 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhChh
Confidence 9999999999999999999987 467999999976543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-151 Score=1541.56 Aligned_cols=1189 Identities=19% Similarity=0.217 Sum_probs=870.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAE 167 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1350)
.++.+++.++ + .++.+++..++..++....|+++..+++.+..... . .... ..++..++++.++..++....
T Consensus 307 l~~~l~~~~~---~-~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~--~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (1522)
T TIGR00957 307 LFKVLYKTFG---P-YFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-P--DWQG-YFYTGLLFVCACLQTLILHQY 378 (1522)
T ss_pred HHHHHHHHHh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c--cchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555433 2 22333444444444555556677888886543211 1 1111 111112222222222332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 168 ISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAV 247 (1350)
Q Consensus 168 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1350)
.+...+.+.++...++..+|+|+++++..++++. ++|+++|++++|++++.+.. ..+..++..++.+++++++++..-
T Consensus 379 ~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~ 456 (1522)
T TIGR00957 379 FHICFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNL 456 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335567888888999999999999999999888 99999999999999998854 233333333333333333322211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000689 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 248 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
...+++.++++++++.+..++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++++..++..+...+.
T Consensus 457 g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~ 536 (1522)
T TIGR00957 457 GPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKS 536 (1522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233444555566666677788888888999999999999999999999999999999999999998888877766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRH--HFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~--g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 405 (1350)
.....+........ ...+.++.++.+.+.. +.++.+.+++++.++.....|+..++..+..+.+++++.+||.+++
T Consensus 537 ~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l 614 (1522)
T TIGR00957 537 AYLHAVGTFTWVCT--PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFL 614 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544332221111 1122233455666653 5688888888776666677799999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccCC-CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000689 406 DHKPSIDRNSESGLELD-SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 406 ~~~~~~~~~~~~~~~~~-~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 484 (1350)
+.+++.+. ........ ...+.|+++|++|+|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++
T Consensus 615 ~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~ 692 (1522)
T TIGR00957 615 SHEELEPD-SIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 692 (1522)
T ss_pred cCcccccc-cccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 86543211 00001111 112379999999999742 3469999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCC
Q 000689 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564 (1350)
Q Consensus 485 G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g 564 (1350)
|+|.++| +|+||+|+||+|++||+|||.+|.+ .+++++.++++.|++.+++..+|+|++|.+|++|
T Consensus 693 G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g 758 (1522)
T TIGR00957 693 GHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758 (1522)
T ss_pred cEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC
Confidence 9999998 5999999999999999999999976 4667788888999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHH---hcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000689 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDR---FMIGRTTLVIAHRLSTIRKADVVAVLQQGS 641 (1350)
Q Consensus 565 ~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 641 (1350)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+
T Consensus 759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999998853 456899999999999999999999999999
Q ss_pred EEEecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcc-cCCCCCCcccCCCCC---ccc-ccCCCC----CCCCccccc
Q 000689 642 VSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNAR-KSSARPSSARNSVSS---PII-ARNSSY----GRSPYSRRL 712 (1350)
Q Consensus 642 i~~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~-~~~~~~----~~~~~~~~~ 712 (1350)
|++.|+|++++++ ++.|.+++..+....+....... ..............+ ... ...... .........
T Consensus 839 i~~~g~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1522)
T TIGR00957 839 ISEMGSYQELLQR--DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGD 916 (1522)
T ss_pred EEeeCCHHHHHhc--chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence 9999999999976 67888887644321111000000 000000000000000 000 000000 000000000
Q ss_pred cC-CccCcccccc-cCCCC-chhhhhhhhhhhhHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 713 SD-FSTSDFSLSL-DATYP-SYRHEKLAFKEQASSFWRLAKMNSP-EWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYY 788 (1350)
Q Consensus 713 ~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1350)
.. .......... ..... ......+....+...+..++.|.+. ++...++.+++.++..++..+..+|++.|.+...
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~ 996 (1522)
T TIGR00957 917 QSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPM 996 (1522)
T ss_pred ccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 00 0000000000 00000 0000011111222233333333322 2222222233333334444455666666654211
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhh
Q 000689 789 NPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALD 868 (1350)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D 868 (1350)
.... ......|..+|++++++..++.++..+++.+++.+++.++|++++++++++|++|||+ +++|+++|||++|
T Consensus 997 ~~~~---~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~D 1071 (1522)
T TIGR00957 997 VNGT---QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKE 1071 (1522)
T ss_pred ccCC---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHH
Confidence 0000 0112345667888888888888888999999999999999999999999999999996 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHH
Q 000689 869 ANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKG---FSGDMEAAHSKATQLAG 945 (1350)
Q Consensus 869 ~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 945 (1350)
++.++..++..+..++..++.+++.++++++.+|++++++++++ +++.++++++.+. ..+......+...+++.
T Consensus 1072 i~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~ 1148 (1522)
T TIGR00957 1072 LDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLG---LLYFFVQRFYVASSRQLKRLESVSRSPVYSHFN 1148 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999998888888887655444433 3334444444433 22333344566779999
Q ss_pred HHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHH
Q 000689 946 EAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLV-KHGISDFSKTIRV 1024 (1350)
Q Consensus 946 e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~ 1024 (1350)
|++.|++|||+|++++++.+++.+..+...+..+.............+++ ...+.++.+...+ ..|.++.|.+..+
T Consensus 1149 E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~ 1225 (1522)
T TIGR00957 1149 ETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLS 1225 (1522)
T ss_pred HHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999999999888776554333322221122222 1223333344343 3577888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC-CCCCCCCCcEEEEEEEEECCCCCCCCcccc
Q 000689 1025 FMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAT-PVPDRLRGEVELKHVDFSYPSRPDIPIFRD 1103 (1350)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~ 1103 (1350)
+.+......++..+.....+++.++.+++|+.++++.+++.+....... +..++..|.|+|+||+|+|+++. .+||+|
T Consensus 1226 l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~ 1304 (1522)
T TIGR00957 1226 VSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRH 1304 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccc
Confidence 7777777888888899999999999999999999987665431111111 11234578999999999997643 379999
Q ss_pred eeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCC
Q 000689 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH 1183 (1350)
Q Consensus 1104 vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~ 1183 (1350)
+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++..
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~ 1384 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 000689 1184 ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263 (1350)
Q Consensus 1184 ~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~ 1263 (1350)
+++|+|+|+|++.|+++++|.++|+||||+|||+|.+||||||||+||||||||+|+|||||||||+||++||+.||++
T Consensus 1385 -~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~ 1463 (1522)
T TIGR00957 1385 -QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST 1463 (1522)
T ss_pred -CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1264 LDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1264 L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
|++.+++||||+||||++|+++||||+||++|+|+|+|+|+||+++ +|.|++|++.
T Consensus 1464 l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~--~~~f~~l~~~ 1519 (1522)
T TIGR00957 1464 IRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ--RGIFYSMAKD 1519 (1522)
T ss_pred HHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC--CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 7999999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-145 Score=1471.04 Aligned_cols=1169 Identities=18% Similarity=0.209 Sum_probs=858.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 105 AIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRI 184 (1350)
Q Consensus 105 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 184 (1350)
++++++.++..++....|++++.+++.+... +. . ......+++.+++..++..++.....+...+.+.++-..++.
T Consensus 247 ~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~ 322 (1560)
T PTZ00243 247 WWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNA 322 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666677777765321 11 1 111111111222222233333333344555677777777888
Q ss_pred HHHHHHHhCChhhHh--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000689 185 KYLEAALNQDVQYFD--TEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIA 262 (1350)
Q Consensus 185 ~~~~~ll~~~~~~fd--~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~ 262 (1350)
.+|+|+++++...+. +. ++|+++|++++|++.+.+++. .+..++...+.++++++++..+..+.+++.++++++.+
T Consensus 323 ~if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~ 400 (1560)
T PTZ00243 323 LIFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTL 400 (1560)
T ss_pred HHHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999988775 33 789999999999999999873 34556666666666666665554456777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 263 VIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVV 342 (1350)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1350)
.+..++.++..+..++..+..++..+.+.|.++|||+||.|+||+.+.+++++..++..+...+......+...+.....
T Consensus 401 pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p 480 (1560)
T PTZ00243 401 PLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATP 480 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888999999999999999999999999999999999999999888887776666666555443333322
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----CCCC--
Q 000689 343 FCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSID----RNSE-- 416 (1350)
Q Consensus 343 ~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~----~~~~-- 416 (1350)
.+. .++.++++.+.++.++++.+++++.++.....|+..++..+..+.++.+|++||.++++.++... +...
T Consensus 481 ~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 558 (1560)
T PTZ00243 481 TLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYW 558 (1560)
T ss_pred HHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhc
Confidence 222 23356778888899999999999888888888999999999999999999999999997643100 0000
Q ss_pred -------C--C---------------cc---------------------------CCCCcceEEEEEEEEECCCC-----
Q 000689 417 -------S--G---------------LE---------------------------LDSVSGLIELKHVDFSYPSR----- 440 (1350)
Q Consensus 417 -------~--~---------------~~---------------------------~~~~~g~i~~~~v~f~y~~~----- 440 (1350)
. . .. .....+.+.++|++|+++..
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1560)
T PTZ00243 559 REQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHI 638 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc
Confidence 0 0 00 00011346778887765310
Q ss_pred --------------------------------CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 441 --------------------------------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 441 --------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~ 718 (1560)
T PTZ00243 639 VEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW 718 (1560)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 124589999999999999999999999999999999999999999998
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
++ ++||||+|+||+|++||+|||.++.+ .+.+++.++.+.+++++++..+|+|++|.+|++|.+||
T Consensus 719 ~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LS 784 (1560)
T PTZ00243 719 AE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLS 784 (1560)
T ss_pred EC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCC
Confidence 74 37999999999999999999999875 35566778888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHH-HHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE-ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
|||||||+|||||+.+|+|||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 785 GGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999998877765 4444557899999999999999999999999999999999
Q ss_pred hHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCC
Q 000689 648 HDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDAT 727 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1350)
++++++. +.|.++........+... .. ...+............ .......... ...........+..
T Consensus 865 ~~~l~~~---~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~ 931 (1560)
T PTZ00243 865 SADFMRT---SLYATLAAELKENKDSKE--GD-ADAEVAEVDAAPGGAV-----DHEPPVAKQE--GNAEGGDGAALDAA 931 (1560)
T ss_pred HHHHHhC---hHHHHHHHhhcccccccc--cc-cccccccccccccccc-----cccccccccc--cccccccccccccc
Confidence 9999864 567766543221110000 00 0000000000000000 0000000000 00000000000000
Q ss_pred CCchhhhhhhhhhhhHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 000689 728 YPSYRHEKLAFKEQASSFWRLAKMNSPE--WVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805 (1350)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1350)
..... ..+....+..+|+.++.|.+.. +.++++.++..++..++.....+|++.|...... .....|+.+
T Consensus 932 ~~~l~-~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~-------~~~~~~l~~ 1003 (1560)
T PTZ00243 932 AGRLM-TREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK-------LSAATYLYV 1003 (1560)
T ss_pred cchhh-hHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------CCcccHHHH
Confidence 00000 0001111223344444443321 1111111112222223333344555544332111 112345666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000689 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQ 885 (1350)
Q Consensus 806 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~ 885 (1350)
|+++.++..++.+++.++....+.+.+.++|+.+|++++++|+.|||+ +++|+++|||++|++.++..++..+..++.
T Consensus 1004 y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~~~~~ 1081 (1560)
T PTZ00243 1004 YLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYLYLLQ 1081 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777888889999999999999999999996 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHH
Q 000689 886 NTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKG---FSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELM 962 (1350)
Q Consensus 886 ~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 962 (1350)
.++.+++.++++++.+|.+. ++++|+.+++..+..++.+. ..+......++..+++.|++.|++|||+|+.++.
T Consensus 1082 ~~~~~i~~li~~~~~~p~~~---~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~ 1158 (1560)
T PTZ00243 1082 CLFSICSSILVTSASQPFVL---VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHL 1158 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHH
Confidence 99999999988888888433 34445544444444444333 2223334556678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 963 IVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWL--VKHGISDFSKTIRVFMVLMVSANGAAETLT 1040 (1350)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1350)
+.++|.+.++...+..+.............+++..+...++.+++... ...+..+++.+..++.+......++..+..
T Consensus 1159 ~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~ 1238 (1560)
T PTZ00243 1159 VMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776665433333322223333333333333333332 233446677665555555666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCC-CC----------------C--------CCCCC---CCCCCCCcEEEEEEEEEC
Q 000689 1041 LAPDFIKGGRAMRSVFDLLDRKTEIE-PD----------------D--------PDATP---VPDRLRGEVELKHVDFSY 1092 (1350)
Q Consensus 1041 ~~~~~~~~~~a~~~v~~~~~~~~~~~-~~----------------~--------~~~~~---~~~~~~g~I~f~nVsf~Y 1092 (1350)
...+++.++.+++|+.++++..++.+ +. + +...+ +.++..|.|+|+||+|+|
T Consensus 1239 ~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y 1318 (1560)
T PTZ00243 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRY 1318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEe
Confidence 88999999999999999986433211 00 0 00000 111245889999999999
Q ss_pred CCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCc
Q 000689 1093 PSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA 1172 (1350)
Q Consensus 1093 ~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~ 1172 (1350)
++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+
T Consensus 1319 ~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~ 1397 (1560)
T PTZ00243 1319 REG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397 (1560)
T ss_pred CCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc
Confidence 754 3469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC-CCEEEEeCcCCC
Q 000689 1173 STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK-AEIMLLDEATSA 1251 (1350)
Q Consensus 1173 gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~-p~ILlLDEaTSa 1251 (1350)
||||+||+++. +++|+|+|+|++.++++++|.++|+||||.|||+|.+||||||||||||||||++ |+|||||||||+
T Consensus 1398 gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSa 1476 (1560)
T PTZ00243 1398 GTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATAN 1476 (1560)
T ss_pred ccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 99999999874 6899999999999999999999999999999999999999999999999999996 899999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhh
Q 000689 1252 LDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324 (1350)
Q Consensus 1252 LD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1324 (1350)
||++||+.||++|++.+++||+|+||||++|+++||+|+||++|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1477 LD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1477 IDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEALGR 1548 (1560)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999986 48999999987643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-143 Score=1452.88 Aligned_cols=1170 Identities=19% Similarity=0.240 Sum_probs=841.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 112 FVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAAL 191 (1350)
Q Consensus 112 ~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll 191 (1350)
++..++....|+++..+++.+..... ... .....+++.++++.++..++.....+.....+.++-..+...+|+|++
T Consensus 90 ~~~~~~~~~~P~ll~~li~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 90 YFGEATKAVQPLLLGRIIASYDPFNA-PER--EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC-Cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455567888876532111 110 011112222222222233333333444455666666666667799999
Q ss_pred hCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 192 NQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATS 271 (1350)
Q Consensus 192 ~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 271 (1350)
+++...+++. ++|+++|++++|++++.+++... ..++...+.+++++++++....+.+++.++++++++.+..++.++
T Consensus 167 ~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 167 KLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred hCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 89999999999999999976533 333344444555555555444456777777888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 272 LAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLW 351 (1350)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1350)
+.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++++..++..+...+......+...+..+ ....+.++.
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 322 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF--SGFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888777776666554333322222 222344556
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcceEEE
Q 000689 352 YGGYLVRHHFTNGGLAIATMFAVMIGGLALA-QAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIEL 430 (1350)
Q Consensus 352 ~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~ 430 (1350)
++++.+.++ ++.+.+++++.++.....|+. .++..+..+.++.++++||.++++.++.. .... . .....|++
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~~---~--~~~~~i~~ 395 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLEY---N--LTTTEVEM 395 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccc---c--CCCCceEE
Confidence 677776644 678888887766666666764 68888999999999999999999865431 1110 0 11235999
Q ss_pred EEEEEECCCCC-------------------------------CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000689 431 KHVDFSYPSRP-------------------------------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 431 ~~v~f~y~~~~-------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 479 (1350)
+|++|.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999995310 13589999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccch
Q 000689 480 YDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQ 559 (1350)
Q Consensus 480 ~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~ 559 (1350)
++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.+++.++++.|++.+++..+|+|++|.
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~ 541 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV 541 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence 999999999998 5999999999999999999999975 45566777888888999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHH-HHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000689 560 VRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE-ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQ 638 (1350)
Q Consensus 560 ~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 638 (1350)
+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|++|+
T Consensus 542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 4677778999999999999999999999999
Q ss_pred CCEEEEecChHHHHhccCCcHHHHHHHHHHHh-----hHh-----h------hh-hc-------c--cC--CCCCCccc-
Q 000689 639 QGSVSEIGTHDELIAKGENGVYAKLIRMQEAA-----HET-----A------LN-NA-------R--KS--SARPSSAR- 689 (1350)
Q Consensus 639 ~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~~-----~~~-----~------~~-~~-------~--~~--~~~~~~~~- 689 (1350)
+|+|++.|+++++... ++.|.+.+...... ... + .. .. . .. ...+....
T Consensus 622 ~g~i~~~g~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1490)
T TIGR01271 622 EGVCYFYGTFSELQAK--RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEK 699 (1490)
T ss_pred CCEEEEEcCHHHHHhc--ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875 45666655311000 000 0 00 00 0 00 00000000
Q ss_pred --------CCC-----------------CCcc--cccCC---------------CCCCCCc---c-----cccc------
Q 000689 690 --------NSV-----------------SSPI--IARNS---------------SYGRSPY---S-----RRLS------ 713 (1350)
Q Consensus 690 --------~~~-----------------~~~~--~~~~~---------------~~~~~~~---~-----~~~~------ 713 (1350)
... .... ..... ....... . ....
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1490)
T TIGR01271 700 RKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLM 779 (1490)
T ss_pred ccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 000 0000 00000 0000000 0 0000
Q ss_pred CCc-c------C------------c-----c-------cccccC----CCC--chh-----hhhhhhhhhhHHHHHHHHh
Q 000689 714 DFS-T------S------------D-----F-------SLSLDA----TYP--SYR-----HEKLAFKEQASSFWRLAKM 751 (1350)
Q Consensus 714 ~~~-~------~------------~-----~-------~~~~~~----~~~--~~~-----~~~~~~~~~~~~~~~~~~~ 751 (1350)
... . . + . ....+. ..+ +.. .+.+....+...+..|++|
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y 859 (1490)
T TIGR01271 780 THSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRY 859 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHH
Confidence 000 0 0 0 0 000000 000 000 0000111122334444444
Q ss_pred cch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c-CCchh-H----------HHHHHHHH-HHHHHHHHHHHH
Q 000689 752 NSP--EWVYALVGSVGSVICGSLNAFFAYVLSAIMSVY--Y-NPDHA-Y----------MIREIAKY-CYLLIGLSSAEL 814 (1350)
Q Consensus 752 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~-~----------~~~~~~~~-~~~~~~l~~~~~ 814 (1350)
.+. .+.++++.+++.++..++..+..+|+..|.... + ..... . .......| .++|++++++..
T Consensus 860 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1490)
T TIGR01271 860 ITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVL 939 (1490)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHH
Confidence 332 223333333333344444445555655443210 0 00000 0 00011122 455666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 815 LFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC 894 (1350)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~ 894 (1350)
++.+++.+++.+.+.+++.++|.+++++++++|++||++ +++|+++|||++|++.++..++..+..++..++.+++.+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l 1017 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAI 1017 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHH----HHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHH
Q 000689 895 TAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDME----AAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSN 970 (1350)
Q Consensus 895 ~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~ 970 (1350)
+++++++|++++ +++|+++++++++.++.+. .++.+ ...+...+++.|++.|+.|||+|++++.+.++|.+.
T Consensus 1018 ~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~~~-~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~ 1093 (1490)
T TIGR01271 1018 FVVSVLQPYIFI---AAIPVAVIFIMLRAYFLRT-SQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKA 1093 (1490)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHH
Confidence 999888887544 3455555555555555443 33333 344567799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 971 LQTPLRRCFWKGQIAGSGYGVA-QFCLYASY--ALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIK 1047 (1350)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1350)
++...+..+...... .|..+. .++..+.. ++.++++.. .++.+.+..++.+......++..++..+.++..
T Consensus 1094 ~~~~~~~~~~~~~~~-~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~ 1167 (1490)
T TIGR01271 1094 LNLHTANWFLYLSTL-RWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDG 1167 (1490)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887654433222211 122211 11111111 111222221 122233333333333444555666667778889
Q ss_pred HHHHHHHHHHHhcccccCCCCCCC---------------CCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCC
Q 000689 1048 GGRAMRSVFDLLDRKTEIEPDDPD---------------ATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGK 1112 (1350)
Q Consensus 1048 ~~~a~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge 1112 (1350)
.+.+++|+.++++.+++....... ..++.++..|.|+|+||+|+|++. .++||+|+||+|+|||
T Consensus 1168 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1168 LMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCC
Confidence 999999999999876653211000 001123456899999999999753 3579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHH
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEII 1192 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~ 1192 (1350)
+||||||||||||||+++|+|+|+ ++|+|+|||+||++++++++|++|+||||||+||+||||+||+++. .++|+++|
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~ 1324 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIW 1324 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHH
Confidence 999999999999999999999998 7999999999999999999999999999999999999999999875 58999999
Q ss_pred HHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCce
Q 000689 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKT 1272 (1350)
Q Consensus 1193 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~T 1272 (1350)
+|++.++++++|.++|+||||+|+|+|.+||||||||||||||||++|+|||||||||+||++||+.|+++|++.+++||
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~T 1404 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCT 1404 (1490)
T ss_pred HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhhcccc
Q 000689 1273 TIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 1328 (1350)
Q Consensus 1273 vI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~~~~~ 1328 (1350)
||+||||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+......
T Consensus 1405 vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~--~~~f~~l~~~~~~~~~~ 1458 (1490)
T TIGR01271 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMSAADRLKLF 1458 (1490)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC--CcHHHHHHHHhChhccc
Confidence 9999999999999999999999999999999999975 89999999976555443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-112 Score=1006.58 Aligned_cols=574 Identities=39% Similarity=0.605 Sum_probs=539.7
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 86 PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
...+++++.|.++. |+.+..+.++.++......+.|++.++++|.+.... +....+...+..+.++.++..++++
T Consensus 132 ~~~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~----~~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD----DSADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hhHHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999876 556677888888888888888999999999876411 1123334455666677777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
++.+|+.++++++..++|.++|+++++++++|||.+ ++|||+||++.|++.+.+.++..+...+.+.+..++++++||+
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~ 285 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~ 325 (1350)
++|+|++++++.+|+++++..+++++.+++.++.|++.++++.+++|.+++|||||+|+.|+.|.+||.+..++..+.+.
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405 (1350)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 405 (1350)
|.+...+++++...+..++..+.++|||++++..|.+|.|.+++|++|......++..+...++.++++..|.+|+||++
T Consensus 366 k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 366 KEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCc-cCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000689 406 DHKPSIDRNSESGL-ELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 406 ~~~~~~~~~~~~~~-~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 484 (1350)
|++|.++.. +. .+...+|.|+|+||+|+||+||+.+||+|+||+|+|||+|||||||||||||+++||.|||+|++
T Consensus 446 dr~P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 446 DRKPRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred ccCCCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 999987542 32 22267899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCC
Q 000689 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564 (1350)
Q Consensus 485 G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g 564 (1350)
|+|++||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|++..||++|++|+||.++|+||||.|||+|
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000689 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSE 644 (1350)
Q Consensus 565 ~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~ 644 (1350)
.+|||||||||||||||++||.||||||||||||+++|..|+++|++.++++|||+|||||+|+++||+|+|+++|+|+|
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E 682 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVE 682 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChHHHHhccCCcHHHHHHHHHHH
Q 000689 645 IGTHDELIAKGENGVYAKLIRMQEA 669 (1350)
Q Consensus 645 ~g~~~~l~~~~~~~~y~~l~~~~~~ 669 (1350)
.|+|+||++++ +|.|++|++.|..
T Consensus 683 ~G~h~eLl~~~-~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 683 MGTHDELLSKP-NGLYAKLVQRQLD 706 (716)
T ss_pred cccHHHHhhCc-ccHHHHHHHHhcc
Confidence 99999999983 6899999987754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-111 Score=1049.62 Aligned_cols=656 Identities=41% Similarity=0.656 Sum_probs=584.9
Q ss_pred ccchhhhhccccccc-cccCCeeecCCCCCCCCCCCCCCCCCC-chhhhh-------ccchhhhhhcc-----cCCCCCC
Q 000689 6 SHQQEIKKIEQWRWS-EMQGLELVSSPPFNNHNNSNNNYANPS-PQAQAQ-------ETTTTTKRQME-----NNSSSSS 71 (1350)
Q Consensus 6 ~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~-----~~~~~~~ 71 (1350)
.|.+..+..+ |.| +|++|+||+.|+..|+-+.+-.|.+.- .|+.++ ..+........ ...+..+
T Consensus 545 aHRLStIrna--D~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~ 622 (1228)
T KOG0055|consen 545 AHRLSTIRNA--DKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSR 622 (1228)
T ss_pred eeehhhhhcc--CEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccC
Confidence 6889988887 999 999999999999888877764332220 010000 00000000000 0000000
Q ss_pred C-----C--CCCCCCCCC-----CCccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCch
Q 000689 72 S-----A--ANSEPKKPS-----DVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNM 139 (1350)
Q Consensus 72 ~-----~--~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~ 139 (1350)
. . ..++.++.. ...+.++.+++++.+| +|.++++|++++++.|...|++.++++.++..+... +.
T Consensus 623 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~--~~ 699 (1228)
T KOG0055|consen 623 GSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP--DD 699 (1228)
T ss_pred CccccccccccccccccccccccccccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC--Ch
Confidence 0 0 000111011 1146789999999887 588899999999999999999999999999988642 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHH
Q 000689 140 DKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQ 219 (1350)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~ 219 (1350)
+.+......|++++++++++.+++.+++.+++.++|++++.|+|..+|+++++++++|||..+++|.|.+|+.+|+..++
T Consensus 700 ~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr 779 (1228)
T KOG0055|consen 700 DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVR 779 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHH
Confidence 23333334488889999999999999999999999999999999999999999999999987666999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 000689 220 DAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRV 299 (1350)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~ 299 (1350)
..+++.+..+++++..++++++++|+++|+|++++++++|++++..+...+.+.+...+..+...+.+..+.|+++||||
T Consensus 780 ~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrT 859 (1228)
T KOG0055|consen 780 AAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRT 859 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Q 000689 300 VFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGL 379 (1350)
Q Consensus 300 vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~ 379 (1350)
|++|+.|+++.+.|.+..++..+...+.+.+.++.+++.+.+.++.+++.+|||++++.+|.+++.+++.+++.+.+...
T Consensus 860 V~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 860 VAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEE
Q 000689 380 ALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTI 459 (1350)
Q Consensus 380 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~ 459 (1350)
.+++.....+++.+|+.|+.+||++++++|++++..+.+...++.+|.|+|+||+|+||+||+.+||+|+||+|++|+++
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEE
Confidence 99999999999999999999999999999988765444445567889999999999999999999999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHH
Q 000689 460 ALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA 539 (1350)
Q Consensus 460 ~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~ 539 (1350)
||||||||||||++.||.|||+|++|.|.|||+|+++++++|||++||+|.|||.||++||||||+||...++.+|+.+|
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999666899999999
Q ss_pred HHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 000689 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTL 619 (1350)
Q Consensus 540 ~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i 619 (1350)
|+.|++|+||.+||+||||.+||+|.+||||||||||||||++|||+||||||+|||||.++|+.||++|++.+.|||+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHH
Q 000689 620 VIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 620 ~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~ 668 (1350)
+|||||+|+++||.|+|+++|+|+|+|+|++|+++ +|.|++|++.|.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~--~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK--RGIYFRLVQLQS 1226 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHHhC--CCchHHHhhhcc
Confidence 99999999999999999999999999999999996 899999998764
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-110 Score=990.81 Aligned_cols=575 Identities=37% Similarity=0.616 Sum_probs=546.7
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 743 SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHS 822 (1350)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 822 (1350)
..+|+++.+.+|+|+++..+.++.++......+.|++.+.+++.+...+. ........+.++.++.++..++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998876111 1334455677788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQW 902 (1350)
Q Consensus 823 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 902 (1350)
++.++++++..++|..+|+++++++++|||. |.+|++++|++.|+..+.+.++..+...+.+.+..++++..|++++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 9999999999999999999999999999996 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 903 RLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKG 982 (1350)
Q Consensus 903 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 982 (1350)
.|+++.+..+|++.+...++.++.++.+++.+++.+.++....|.+.+++|||+|+.|....++|.+.++...+...+.+
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000689 983 QIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRK 1062 (1350)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~ 1062 (1350)
...+++++..+++.++....++|||++++..|.++.+.+..++++......++..+.....++.++..|.+|+++++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEE
Q 000689 1063 TEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142 (1350)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1142 (1350)
|..++. +...|....|.|+|+||+|+||.||+.|||+|+||+|+|||+||+||||||||||++++|+|||+|++|+|
T Consensus 449 P~i~~~---G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 449 PRIPLT---GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCC---CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 988754 22233357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCC
Q 000689 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222 (1350)
Q Consensus 1143 ~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1222 (1350)
++||+||++++.++||++||+|.|||+||++||+|||.||.++++||||.+|+++||+|+||.++|+||||.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecC
Q 000689 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1223 SgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt 1302 (1350)
||||||||||||||+|||+||||||||||||+++|..||++|++..+|+|||+|||||+||++||+|+|+++|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhHHHHHHhhhc
Q 000689 1303 HSHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1303 ~~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
|+|||++ ++|.|++|++.|...
T Consensus 686 h~eLl~~-~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSK-PNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhC-cccHHHHHHHHhccc
Confidence 9999998 689999999988554
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-93 Score=881.89 Aligned_cols=570 Identities=31% Similarity=0.462 Sum_probs=515.2
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 86 PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
+..+.+++..+.++++. +.-.++.+++..+.....|.++..++|.+..... ...+....+.++++++...++.+
T Consensus 139 ~~~~~~f~~~~~~~~~~-l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-----~~tL~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 139 PFGLSWFIPLLFKYRRL-LFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-----RSTLTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred ccchHhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655433 2223333333333334444456777887765322 22334455566667777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
++.++..+++.++..++-.++|+|++++|+.||.++ ++|++++|+. |.+.|+++++..+...+.++.++++.+++|++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999996 99999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~ 325 (1350)
++|+|++++++.+|+++++..++.+.+++..++..+..++.++...|++.||++||+.+.|..+..+|++...++.+.++
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405 (1350)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 405 (1350)
+..........+..++..++.++++|+|+++|.+|.+|.|.++++.+.......|+..+...+..+++++.+.+|+.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil 450 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL 450 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000689 406 DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 485 (1350)
+.++|.+... .....+...|.|+|+||+|+|+.++ .++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|
T Consensus 451 ~~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 451 DTPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred cCCccccccc-ccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 9988753311 1124456789999999999997543 4799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCC
Q 000689 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565 (1350)
Q Consensus 486 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~ 565 (1350)
+|++||.|+.++++.++|++||||+||+.||+|||+|||++++|++++|++++||+.+++|+||.++|.||+|.+||+|.
T Consensus 529 ~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~ 608 (709)
T COG2274 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA 608 (709)
T ss_pred eEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000689 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 566 ~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 645 (1350)
+|||||||||+|||||++||+||||||||||||+++|+.|.+.|.++..|+|+|+||||++++++||||+||++|+|+++
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHhccCCcHHHHHHHHH
Q 000689 646 GTHDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
|+|+||++. +|.|++++..|
T Consensus 689 gs~~ell~~--~g~y~~l~~~q 708 (709)
T COG2274 689 GSHEELLAQ--GGLYARLYQQQ 708 (709)
T ss_pred CCHHHHHHh--cChHHHHHhcc
Confidence 999999998 89999998754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-91 Score=869.18 Aligned_cols=557 Identities=31% Similarity=0.470 Sum_probs=504.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 755 EWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKR 834 (1350)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1350)
.+..+.-.++.+++.+++..+.+++...+++....... ........+.++++++...++.+++.+++..++.++...
T Consensus 152 ~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~ 228 (709)
T COG2274 152 YRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLE 228 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333444444444444444444554432221 122333445566777888899999999999999999999
Q ss_pred HHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 835 VREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPV 914 (1350)
Q Consensus 835 lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl 914 (1350)
+-.+.|+|+++.|+.||.+ +++|++++|+ +|.+.+++++...+...+.++.+.++.++++++++|+|++++++.+|+
T Consensus 229 l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l 305 (709)
T COG2274 229 LSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305 (709)
T ss_pred HHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985 7899999998 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000689 915 VVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQF 994 (1350)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1350)
+++..++...++++..++..+..+...+++.|++.|++|||+.+.|..+..+|.+...+..+..++..........+.++
T Consensus 306 ~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (709)
T COG2274 306 NVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSL 385 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999998888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 000689 995 CLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATP 1074 (1350)
Q Consensus 995 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~ 1074 (1350)
+..++.++++|+|++++..|.+|+|.++++.+.......++..+...+.++++...+.+|+.++++.++|.+.+.. ..
T Consensus 386 l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~--~~ 463 (709)
T COG2274 386 LQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT--LI 463 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988654332 12
Q ss_pred CCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH
Q 000689 1075 VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154 (1350)
Q Consensus 1075 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l 1154 (1350)
..+...|+|+|+||+|+|+.++ +++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||+|++++++
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred cccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH
Confidence 2345789999999999998663 379999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+++|++|+|||||++||+|||||||++++|++++||+++||+.+++|+||.++|.||||+|||+|.+|||||||||+|||
T Consensus 543 ~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 543 ASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCch
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~ 1314 (1350)
||+++|+||||||||||||++||+.|.+.|.+..+|||+|+||||++++++||||+|||+|+|+|+|+|+||++. +|.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~--~g~ 700 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ--GGL 700 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh--cCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred hHHHHHHh
Q 000689 1315 YARMIQLQ 1322 (1350)
Q Consensus 1315 y~~l~~~q 1322 (1350)
|+++|+.|
T Consensus 701 y~~l~~~q 708 (709)
T COG2274 701 YARLYQQQ 708 (709)
T ss_pred HHHHHhcc
Confidence 99999876
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-88 Score=906.32 Aligned_cols=570 Identities=30% Similarity=0.476 Sum_probs=495.3
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAE 167 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1350)
.+.+++++++++++ .++++++++++.+.+.|++|++++.+++.+... .........+++++++++++.+++.+++
T Consensus 812 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDF----ANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666544 367788888899999999999999999976421 1112223346666777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 168 ISCWMWTGERQSIKMRIKYLEAALNQDVQYFDT--EVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 168 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
.++..++++++..++|.++|++++++|++|||+ + ++|++++|+++|++.+++++...+..++..++.++++++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~-~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~ 965 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH-APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY 965 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 5 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhccHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLA-GK-----------------SQEALSQAGNIVEQTVVQIRVVFAFVGES 307 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~~i~~vk~f~~e~ 307 (1350)
++|.+++++++++|++ ...+.++.+... .+ .++..++.+..++|+++||++||+|+.|+
T Consensus 966 ~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 1042 (1466)
T PTZ00265 966 FCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLED 1042 (1466)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchH
Confidence 9999988766544443 333333322211 11 23346677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 308 KALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPS 387 (1350)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~ 387 (1350)
.+.++|.+..++..+...+.....++..++..++.++..++++|+|++++.+|.+++|.++++++++++...++..+...
T Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~ 1122 (1466)
T PTZ00265 1043 YFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSL 1122 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888899999999888888999999999999999999999999887766666667888889
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCCCCcc---CCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcC
Q 000689 388 ISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLE---LDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGS 464 (1350)
Q Consensus 388 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~ 464 (1350)
+..+++++++++|++++++.+++++..+..+.. +....|.|+|+||+|+||++++.++|+|+||+|++|+++|||||
T Consensus 1123 ~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~ 1202 (1466)
T PTZ00265 1123 KGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGE 1202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECC
Confidence 999999999999999999987654221111111 12345789999999999876666899999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCC------------------------------------------------------CCcEEEEC
Q 000689 465 SGSGKSTVVSLIERFYDP------------------------------------------------------TSGQVLLD 490 (1350)
Q Consensus 465 sGsGKSTl~~ll~~~~~~------------------------------------------------------~~G~i~i~ 490 (1350)
||||||||+++|+|+|+| ++|+|++|
T Consensus 1203 SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~id 1282 (1466)
T PTZ00265 1203 TGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282 (1466)
T ss_pred CCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEEC
Confidence 999999999999999999 69999999
Q ss_pred CeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChH
Q 000689 491 GHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570 (1350)
Q Consensus 491 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 570 (1350)
|+|+++++.+++|++||||+|||+||++||+|||+||+|+++++++++||+.+++++||.+||+||||.|||+|.+||||
T Consensus 1283 G~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGG 1362 (1466)
T PTZ00265 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGG 1362 (1466)
T ss_pred CEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeC----CEEE-
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQ----GSVS- 643 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~----G~i~- 643 (1350)
|||||||||||+++|+||||||||||||+++|+.|+++|+++. +++|+|+||||++++++||+|+||++ |+++
T Consensus 1363 QkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~ 1442 (1466)
T PTZ00265 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEE
Confidence 9999999999999999999999999999999999999999984 69999999999999999999999999 9955
Q ss_pred EecChHHHHhccCCcHHHHHHHHH
Q 000689 644 EIGTHDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 644 ~~g~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
|+|+|+||+++. +|.|+++++.|
T Consensus 1443 e~Gth~eLl~~~-~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1443 AHGTHEELLSVQ-DGVYKKYVKLA 1465 (1466)
T ss_pred EecCHHHHHhcC-CChHHHHHhhc
Confidence 899999999731 79999998754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-87 Score=846.36 Aligned_cols=568 Identities=21% Similarity=0.263 Sum_probs=488.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAE 167 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1350)
.++++++|.+++++ .+++++++.++..++.+..|++++.++|.+.....+. ..+..+...++++.++..++.+++
T Consensus 9 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 83 (588)
T PRK11174 9 LTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR----EALLPPFILLILLFVLRALLAWLR 83 (588)
T ss_pred hhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889888755 4566777778888888888889999999754211111 112222333344455567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 168 ISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAV 247 (1350)
Q Consensus 168 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1350)
.++..+.+.++..++|.++|+|++++|.+||++. ++|++++|+++|++.+++.+.+.+..++..++.+++.++++++++
T Consensus 84 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (588)
T PRK11174 84 ERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000689 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 248 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK11174 163 WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEV 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLA---------IATMFAVMIGGLALAQAAPSISAFAKAKVAA 398 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~ 398 (1350)
.+......++..++..+..+++++++++.+. |.++.|.+ +.++.+......|+..+...+..++++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 321 (588)
T PRK11174 243 LRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAA 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666555555555556665543 77777754 1111222334568889999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000689 399 AKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 399 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 478 (1350)
+|+.++++.+++.+. ...........+.|+|+||+|.|++ ++++|+|+||+|++|+++|||||||||||||+++|+|
T Consensus 322 ~ri~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 322 ESLVTFLETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHcCCCcccC-CCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 999999987654221 1110111112357999999987763 3479999999999999999999999999999999999
Q ss_pred CCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccc
Q 000689 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558 (1350)
Q Consensus 479 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t 558 (1350)
+| |++|+|.+||+|+++++.+++|++|+||||+|+||++||+|||++|+|++++++++++++.|++++|+.+||+||||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000689 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQ 638 (1350)
Q Consensus 559 ~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 638 (1350)
.+||+|.+|||||||||+|||||++||+|||||||||+||+++++.|+++|+++.+++|+|+||||++++++||+|+||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCEEEEecChHHHHhccCCcHHHHHHHHHH
Q 000689 639 QGSVSEIGTHDELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 639 ~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~ 668 (1350)
+|+|+|.|+|+||+++ ++.|+++++.|.
T Consensus 558 ~G~i~e~G~~~eL~~~--~~~y~~l~~~q~ 585 (588)
T PRK11174 558 DGQIVQQGDYAELSQA--GGLFATLLAHRQ 585 (588)
T ss_pred CCeEeecCCHHHHHhc--chHHHHHHHHhh
Confidence 9999999999999987 789999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-86 Score=834.96 Aligned_cols=562 Identities=36% Similarity=0.571 Sum_probs=505.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
+++++.+.+ .+ .+.+++++.++..+.....|.+++.++|.+.. +. .....+..+++++.++..++.++..
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~----~~~~~~~~~~~~~~~~~~v~~~~~~ 73 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---DL----GELLELLLLLLLLALLGGVLRALQS 73 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655 34 55666777777777777778888888887651 11 1222233344444456677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
++..+.+.++..++|.++|++++++|.+||+++ ++|++++|+++|++.++..+.+....+...+..+++.+++++..+|
T Consensus 74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (567)
T COG1132 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSW 152 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 888888899999999999999999999999998 9999999999999999999998866666678888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
.+++++++..|++.+...++.++.++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 153 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (567)
T COG1132 153 RLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
...+...++..++..+..++++++|++++..+.++.|.+++++.+......|+..+...+..++.+..+++|++++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~ 312 (567)
T COG1132 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE 312 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888899999999999999999999999999999999988888899999999999999999999999999987
Q ss_pred CCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
+++.+... ......+.|+|+||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 313 ~~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 313 PEVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred ccccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 65432111 12334577999999999974 34799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
+||+|+++++.+++|++||+|||||+||++||+|||.+|+|+++++++++||+.+++++||+++|+||||.+||+|.+||
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS 467 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||||+||||+++||+|||||||||+||+++|+.|+++++++.++||+|+||||++++++||+|+||++|+|+|.|+|
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h 547 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH 547 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHhccCCcHHHHHHHHHH
Q 000689 649 DELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 649 ~~l~~~~~~~~y~~l~~~~~ 668 (1350)
+||+++ +|.|+++|+.|.
T Consensus 548 ~eLl~~--~g~y~~l~~~~~ 565 (567)
T COG1132 548 EELLAK--GGLYARLYQAQG 565 (567)
T ss_pred HHHHHc--CCHHHHHHHHhh
Confidence 999998 899999998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-86 Score=830.31 Aligned_cols=553 Identities=33% Similarity=0.524 Sum_probs=491.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 755 EWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKR 834 (1350)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1350)
.+ .+.++.++.++...+....+++++.+++... . .......+...++++.++..++.++..++..+.+.+...+
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-A----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 5566666666666777777777777776655 1 1122334445555566677778888888888888999999
Q ss_pred HHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 835 VREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPV 914 (1350)
Q Consensus 835 lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl 914 (1350)
+|+++|+++++.|++||++ +++|++++|+++|++.++..+......+...++.+++.+++++..+|.++++++...|+
T Consensus 87 lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 164 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL 164 (567)
T ss_pred HHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999996 77999999999999999999999866666678888899999999999999999999888
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000689 915 VVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQF 994 (1350)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1350)
+.+.........+...+..++..++..+.+.|.++|+++||+|+.++...++|.+..+...+...+.....+....+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (567)
T COG1132 165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766655577788888888999999999999999999999999999999888888877777767777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 000689 995 CLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATP 1074 (1350)
Q Consensus 995 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~ 1074 (1350)
+..+..++.++++.+++..+.+++|.++.++.+......++..+......+..+..+++|++++++.+++.......
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--- 321 (567)
T COG1132 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---
Confidence 89999999999999999999999999888888888888899999999999999999999999999986654322111
Q ss_pred CCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH
Q 000689 1075 VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154 (1350)
Q Consensus 1075 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l 1154 (1350)
.....|+|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||+++++
T Consensus 322 -~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 322 -LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL 398 (567)
T ss_pred -CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH
Confidence 1234578999999999974 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
++||++|++|||||+||+|||+|||++|+++++|||+++||+.|+++|||+++|+||||.|||+|.+|||||||||||||
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCch
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~ 1314 (1350)
|++++|||||||||||+||++||+.|++++++..+|||+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~--~g~ 556 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK--GGL 556 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc--CCH
Confidence 999999999999999999999999999999988899999999999999999999999999999999999999998 899
Q ss_pred hHHHHHHhh
Q 000689 1315 YARMIQLQR 1323 (1350)
Q Consensus 1315 y~~l~~~q~ 1323 (1350)
|++||+.|.
T Consensus 557 y~~l~~~~~ 565 (567)
T COG1132 557 YARLYQAQG 565 (567)
T ss_pred HHHHHHHhh
Confidence 999999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=842.36 Aligned_cols=566 Identities=33% Similarity=0.500 Sum_probs=502.9
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 85 TPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASS 164 (1350)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (1350)
....+++++++.++. +..+++++++.++..++....|++++.++|.+.... +.+.+ .....+++++.++..++.
T Consensus 145 ~~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~ 218 (711)
T TIGR00958 145 TADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-GPPAL----ASAIFFMCLLSIASSVSA 218 (711)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345678888888765 445566777777777778888888999999865321 11111 112233334445566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 165 WAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGF 244 (1350)
Q Consensus 165 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1350)
+++.+++.+.+.++..++|.++|++++++|.+||++. ++|++++|+++|++.+++.+...+..++.++..+++.+++++
T Consensus 219 ~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 219 GLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 000689 245 SAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLG 324 (1350)
Q Consensus 245 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~ 324 (1350)
+++|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 325 YKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRI 404 (1350)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 404 (1350)
.+.....+....+..++..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..+++++.+.+|++++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666666666777778888999999999999999999999988888899999999999999999999999999
Q ss_pred HccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000689 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 484 (1350)
++.+++.+.. ....+.+..+.|+|+||+|+||+++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 458 l~~~~~~~~~--~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 458 LDRKPNIPLT--GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred hCCCCCCCCC--CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 9887654321 11122234578999999999987655689999999999999999999999999999999999999999
Q ss_pred cEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCC
Q 000689 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERG 564 (1350)
Q Consensus 485 G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g 564 (1350)
|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.++++++++++.+++++++.++|+||||.+||+|
T Consensus 536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000689 565 VQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSE 644 (1350)
Q Consensus 565 ~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~ 644 (1350)
.+|||||||||+||||++++|+|||||||||+||+++|+.+++ . ...+++|+|+||||+++++.||+|+||++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998 3 3347899999999999999999999999999999
Q ss_pred ecChHHHHhccCCcHHHHH
Q 000689 645 IGTHDELIAKGENGVYAKL 663 (1350)
Q Consensus 645 ~g~~~~l~~~~~~~~y~~l 663 (1350)
+|+|+||+++ ++.|+++
T Consensus 694 ~Gt~~eL~~~--~~~y~~l 710 (711)
T TIGR00958 694 MGTHKQLMED--QGCYKHL 710 (711)
T ss_pred eeCHHHHHhC--CCchHhc
Confidence 9999999987 6888875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=823.42 Aligned_cols=568 Identities=22% Similarity=0.292 Sum_probs=479.9
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFW 824 (1350)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 824 (1350)
+++++++.++.++.++++++++++..++....++++..+++.....+.. ......+..+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888888888888888888888888888765422111 11222344455556667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 825 DIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRL 904 (1350)
Q Consensus 825 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l 904 (1350)
...+.++..++|.++|+++++.|.+||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 905 ALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984 (1350)
Q Consensus 905 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1350)
++++++++|+.++......+..+...++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887776666677777777788888999999999999999999999999999999888877776666555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 985 AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKT---------IRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSV 1055 (1350)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v 1055 (1350)
......+..++..+..+++.+++++... |.+++|.+ +.+.+.......++..+......+.++..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544445455544433 66666643 1111222334567778888888999999999999
Q ss_pred HHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccC
Q 000689 1056 FDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
.++++.+++.++... .+.+....+.|+|+||+|.|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~~~--~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 325 VTFLETPLAHPQQGE--KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHcCCCcccCCCc--cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999987653221111 1111112457999999998864 347999999999999999999999999999999999999
Q ss_pred CCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccc
Q 000689 1136 EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFV 1215 (1350)
Q Consensus 1136 ~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~v 1215 (1350)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++++++|+|+++|++.|++++||+++|+||||.|
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCC
Q 000689 1216 GERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDG 1295 (1350)
Q Consensus 1216 ge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~G 1295 (1350)
||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+||+|+||++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred eEEEecChhHHhhcCCCchhHHHHHHhhh
Q 000689 1296 KVAELGSHSHLLKNNPDGCYARMIQLQRF 1324 (1350)
Q Consensus 1296 rIvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1324 (1350)
+|+|.|+|+||+++ +|.|+++++.|..
T Consensus 560 ~i~e~G~~~eL~~~--~~~y~~l~~~q~~ 586 (588)
T PRK11174 560 QIVQQGDYAELSQA--GGLFATLLAHRQE 586 (588)
T ss_pred eEeecCCHHHHHhc--chHHHHHHHHhhc
Confidence 99999999999987 8999999988753
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=826.50 Aligned_cols=564 Identities=27% Similarity=0.329 Sum_probs=498.0
Q ss_pred chHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRF-ADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 87 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
..+++++++ +++.++ .++..++++++..++....|++++.++|.+.... +. ..+..+++.++++.++.+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~ 194 (686)
T TIGR03797 121 LGLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DR----SLLVQIALALLAAAVGAAAFQL 194 (686)
T ss_pred ccHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666 444433 3445555666666666667777888998765321 11 1222233444445555677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
++.++..+.+.++..++|..+|+|++++|+.||+++ ++|++++|++ |++.+++.+...+...+.++..+++.++++++
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (686)
T TIGR03797 195 AQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFY 272 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999998 9999999997 89999999988888888888888888899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~ 325 (1350)
++|.+++++++.+|+++++..++.+..++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...
T Consensus 273 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 352 (686)
T TIGR03797 273 YSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLEL 352 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405 (1350)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 405 (1350)
+......+...+..++..+..++++|+|++++.+|.+|.|.++++..+......|+.++...+..+++++.+.+|+.+++
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 432 (686)
T TIGR03797 353 SAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL 432 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98888888888888888888889999999999999999999999988888888899999999999999999999999999
Q ss_pred ccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000689 406 DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 485 (1350)
+.+++.+. ....+....+.|+|+||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|
T Consensus 433 ~~~~e~~~---~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 433 EALPEVDE---AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred cCCccccc---CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 87655321 111122345689999999999743 35799999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCC
Q 000689 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565 (1350)
Q Consensus 486 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~ 565 (1350)
+|++||+|+++++.+++|++||||||||++|++||+|||.+|+| +++++++++++.+++++++.++|+||||.+||+|.
T Consensus 509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~ 587 (686)
T TIGR03797 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 (686)
T ss_pred EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000689 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 566 ~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 645 (1350)
+|||||||||+|||||+++|+|||||||||+||+++|+.+.+.|+++ ++|+|+||||+++++.||+|+||++|+|+|.
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999886 6899999999999999999999999999999
Q ss_pred cChHHHHhccCCcHHHHHHHHH
Q 000689 646 GTHDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
|+|+||+++ ++.|+++++.|
T Consensus 666 G~~~~Ll~~--~~~y~~l~~~q 685 (686)
T TIGR03797 666 GTYDELMAR--EGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHhC--CcHHHHHHHhc
Confidence 999999987 79999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-84 Score=828.25 Aligned_cols=565 Identities=32% Similarity=0.524 Sum_probs=499.9
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 743 SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHS 822 (1350)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 822 (1350)
..+++++++.++.+..+..++++.++..++....+++.+.+++........ .......++++++.++..++.+++.+
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGG 223 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777788888888888888888888888888888888876532211 11222333444556667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQW 902 (1350)
Q Consensus 823 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 902 (1350)
++.+++.++..++|+++|++++++|++||++ +++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 903 RLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKG 982 (1350)
Q Consensus 903 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 982 (1350)
++++++++.+|+.++...+..++.+...++.++..++..+++.|+++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777777778888888889999999999999999999999999999999998887776666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000689 983 QIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRK 1062 (1350)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~ 1062 (1350)
...+........+..+..++.+++|.+++..|.++.+.++.+..+......++..+.....++.++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66665555666667777888899999999999999999999888888888999999999999999999999999999876
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEE
Q 000689 1063 TEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142 (1350)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1142 (1350)
++.++.. ...+++..|.|+|+||+|+||++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 462 ~~~~~~~---~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 462 PNIPLTG---TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCC---CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 6543211 1112234678999999999997666789999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCC
Q 000689 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222 (1350)
Q Consensus 1143 ~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1222 (1350)
++||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.++++++|+++|+||||.+||+|.+|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecC
Q 000689 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1223 SgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt 1302 (1350)
|||||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||++++..||+|+||++|+|+|+|+
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 9999999999999999999999999999999999999999 33457899999999999999999999999999999999
Q ss_pred hhHHhhcCCCchhHHHH
Q 000689 1303 HSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1303 ~~eLl~~~~~g~y~~l~ 1319 (1350)
|+||+++ +|.|++|+
T Consensus 697 ~~eL~~~--~~~y~~lv 711 (711)
T TIGR00958 697 HKQLMED--QGCYKHLV 711 (711)
T ss_pred HHHHHhC--CCchHhcC
Confidence 9999987 78999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-84 Score=831.62 Aligned_cols=565 Identities=26% Similarity=0.359 Sum_probs=499.1
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWA 166 (1350)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1350)
..+++++.+++++++. ++..++++++..++....|++++.++|.+.... . ...+..++..++++.++..++.++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~ 215 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-M----MGTLGIISIGLIIAYIIQQILSYI 215 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788887766443 445555566666666677778889999765421 1 112222333334444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246 (1350)
Q Consensus 167 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1350)
+.++..+.+.++..++|.++|+|++++|+.||++. ++|++++|++ |++.+++++...+...+.++..+++.+++++++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (708)
T TIGR01193 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998 9999999998 999999999888888888888888888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000689 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326 (1350)
Q Consensus 247 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~ 326 (1350)
+|++++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++...+..+...+
T Consensus 294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 373 (708)
T TIGR01193 294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 406 (1350)
.....+....+..++..+..++++|+|++++.+|.+|.|.++++..+......|+.++...+..+++++.+.+|+.++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 453 (708)
T TIGR01193 374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL 453 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88877777777777777888889999999999999999999999888888888999999999999999999999999998
Q ss_pred cCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 000689 407 HKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486 (1350)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 486 (1350)
.+++.+... .........|.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 454 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 454 VDSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred CCCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 766542211 10112234578999999999973 347999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcC-CCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCC
Q 000689 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV 565 (1350)
Q Consensus 487 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g-~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~ 565 (1350)
|++||+|+++++.+++|++||||||||+||++||+|||.+| .+++++++++++++.+++++++.++|+||||.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99999999999999999999999999999999999999999 57889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000689 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 566 ~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 645 (1350)
+|||||||||+||||++++|+|||||||||+||+++|+.+++.|+++ +++|+|+||||+++++.||+|++|++|++++.
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999885 68999999999999999999999999999999
Q ss_pred cChHHHHhccCCcHHHHHHH
Q 000689 646 GTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~~ 665 (1350)
|+|+||+++ ++.|+++++
T Consensus 690 G~~~~L~~~--~~~y~~l~~ 707 (708)
T TIGR01193 690 GSHDELLDR--NGFYASLIH 707 (708)
T ss_pred CCHHHHHhc--CCcHHHHhh
Confidence 999999987 789998874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-83 Score=802.32 Aligned_cols=567 Identities=23% Similarity=0.275 Sum_probs=491.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
++++++|.+++++ .+++++++.++..++....|.+++.++|...............+. ....+++++++..++.++..
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYML-PAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence 5567777777644 455666777776666667777888888864311110000011111 12223344456677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
++..+.++++..++|.++|+|++++|.++|++. ++|++++|+++|++.+++++.+.+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAV-IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
++++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887655 4466778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVM-IGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 406 (1350)
.+..+...++..++..+..++++++|++++ +|.++.|.+++++.+.. ....++..+...+..+++++++++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 988888888888888888888899999985 78899999988765543 3345777778888999999999999999999
Q ss_pred cCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 000689 407 HKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486 (1350)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 486 (1350)
.+++.+.... .......+.|+|+||+|+|++. ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 8765322111 1112234679999999999753 246999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCC
Q 000689 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566 (1350)
Q Consensus 487 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 566 (1350)
|.+||+|+++++.+++|++|+||+|||++|++||+|||++++|++++++++++++.+++++++.+ |+||||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 567 LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
|||||||||+||||++++|+|||||||||+||+++++.+++.|.++.+++|+|+||||+++++.||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChHHHHhccCCcHHHHHHH
Q 000689 647 THDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 647 ~~~~l~~~~~~~~y~~l~~ 665 (1350)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~--~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ--QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc--CcHHHHHHh
Confidence 99999988 799999885
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-83 Score=826.57 Aligned_cols=565 Identities=25% Similarity=0.313 Sum_probs=497.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWA 166 (1350)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1350)
..++.++++++++++ .+...++++++..++....|++++.++|.+..... . ..+..+...++++.++.+++.++
T Consensus 140 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~----~~l~~~~~~~~~~~~~~~~~~~~ 213 (710)
T TIGR03796 140 SLLRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-Q----DWLRPLLLGMGLTALLQGVLTWL 213 (710)
T ss_pred ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-h----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766543 33444455555555555566678888887653211 1 11222333344445556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246 (1350)
Q Consensus 167 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1350)
+.++....+.++..++|.++|+|++++|++||+++ ++|++++|+++| +.+++++...+...+.++..+++.+++++++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 291 (710)
T TIGR03796 214 QLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLY 291 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998 999999999988 6899999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000689 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326 (1350)
Q Consensus 247 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~ 326 (1350)
+|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||++++|+.+.++|.+...+..+...+
T Consensus 292 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 292 DPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 406 (1350)
......+...+..++..+..++++++|++++.+|.+|.|.++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~ 451 (710)
T TIGR03796 372 LGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLR 451 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888899999999999999999999999888888888999999999999999999999999998
Q ss_pred cCCCCCCCCC---C-CccC-CCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000689 407 HKPSIDRNSE---S-GLEL-DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 407 ~~~~~~~~~~---~-~~~~-~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 481 (1350)
.+++.+.... . .... ....+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+
T Consensus 452 ~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 452 NPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred CCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7665422110 0 0111 2345789999999999853 3579999999999999999999999999999999999999
Q ss_pred CCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhc
Q 000689 482 PTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVR 561 (1350)
Q Consensus 482 ~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~ 561 (1350)
|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.+++|++++++++++++.+++++++.++|+||||.+|
T Consensus 531 p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 531 PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000689 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGS 641 (1350)
Q Consensus 562 ~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 641 (1350)
|+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+.+.|++ .++|+|+||||+++++.||+|++|++|+
T Consensus 611 e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999986 5899999999999999999999999999
Q ss_pred EEEecChHHHHhccCCcHHHHHH
Q 000689 642 VSEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 642 i~~~g~~~~l~~~~~~~~y~~l~ 664 (1350)
|++.|+|+||+++ ++.|++++
T Consensus 689 i~~~G~~~~Ll~~--~~~y~~l~ 709 (710)
T TIGR03796 689 VVQRGTHEELWAV--GGAYARLI 709 (710)
T ss_pred EEEecCHHHHHHc--CCcHHHHh
Confidence 9999999999987 78898876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-86 Score=735.78 Aligned_cols=548 Identities=27% Similarity=0.381 Sum_probs=467.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 112 FVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQ-EVLKYAFYFLVV--GAAIWASSWAEISCWMWTGERQSIKMRIKYLE 188 (1350)
Q Consensus 112 ~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~ 188 (1350)
.+.-+.....|.+.+.++|.+... ..+.. .++.+.++.++- +.+..+++-++.++|..+.+-..+++-..+|+
T Consensus 225 ~i~rli~~~~pi~~k~iv~~ltap----~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 225 IIGRLINVSLPILSKWIVDELTAP----DTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHhhhhHHhHHHHHHhhcCc----chhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 333344445566677888876531 11111 111122111111 22235667778888888888889999999999
Q ss_pred HHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Q 000689 189 AALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGF-SAVWQLALVTLAVVPLIAVIGAI 267 (1350)
Q Consensus 189 ~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~lv~l~~~pl~~~~~~~ 267 (1350)
|+..+++.|+-++ ++|+++.-+...++.+. ++...+.++...+.-+.++++..+ ..+|++++++++++.++......
T Consensus 301 Hlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 301 HLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeee
Confidence 9999999999988 99999998887777765 555555555555555555554443 46899999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 268 HATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYA 347 (1350)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1350)
+..+..+..+++..+..+..+...+++-|.+|||-||+|+++.++|.+.+.++.+..+|......+.......+..++.+
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll 458 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLL 458 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 77777788888888888888889999999999999999999999999999999999988877666665555555555555
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcce
Q 000689 348 LLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGL 427 (1350)
Q Consensus 348 ~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~ 427 (1350)
..-.+.+|+|..+.+++|+.+.+..|++...+|++.....+..+++..+-++++++++++++|+.+.+ ...+....+|.
T Consensus 459 ~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~pl~~~~G~ 537 (790)
T KOG0056|consen 459 AGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPPLKVTQGK 537 (790)
T ss_pred hhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCCccccCCe
Confidence 55556677888899999999999999999999999999999999999999999999999988875432 33344556799
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+|+||+|.|. |++|+|+||||+++||+++|+|||||+||||++++|.|||+.++|.|.|||+||++....++|++||
T Consensus 538 i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 538 IEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred EEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 99999999997 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
+||||..||++||..||.||+|.+++||+.+|++.|++||.|.++|+||+|.|||+|-.||||||||+||||+++++|.|
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHH
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
++|||+|||||..||+.||.+|.++.++||.|+|+|||+|+-+||.|+|+++|+|+|.|+|+||+.+ ++|.|++||+.|
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r-dgG~Ya~MWq~q 774 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR-DGGAYADMWQAQ 774 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc-cCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 489999999876
Q ss_pred HH
Q 000689 668 EA 669 (1350)
Q Consensus 668 ~~ 669 (1350)
..
T Consensus 775 qa 776 (790)
T KOG0056|consen 775 QA 776 (790)
T ss_pred Hh
Confidence 54
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-83 Score=819.61 Aligned_cols=557 Identities=26% Similarity=0.357 Sum_probs=492.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWA 166 (1350)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1350)
..+++++++++++++ .+...++++++..++....|++++.++|.+.... +. ..+..+.+.++++.++..++.++
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~ 206 (694)
T TIGR03375 133 RPKHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AF----ETLWVLAIGVALAIVFDFVLKTL 206 (694)
T ss_pred ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cH----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766543 3444555555666666667777888898765321 11 11222333333444556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246 (1350)
Q Consensus 167 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1350)
+.++..+.+.++..++|..+|+|++++|+.| +++ ++|++++|+ +|++.+++++...+...+.++..+++.+++++++
T Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (694)
T TIGR03375 207 RSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 666 899999999 7999999999888888888888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000689 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326 (1350)
Q Consensus 247 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~ 326 (1350)
+|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 406 (1350)
..........+..++..++.++++++|++++.+|.+|.|.+++++.+......|+..+...+..++.++.+.+|+.++++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~ 443 (694)
T TIGR03375 364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ 443 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98888888888888888888889999999999999999999999888888888999999999999999999999999998
Q ss_pred cCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 000689 407 HKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486 (1350)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 486 (1350)
.+++.+.. ......+...+.|+|+||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 444 ~~~e~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 444 LPVERPEG-TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred CCCCCCCC-CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 87653221 1111122345789999999999743 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCC
Q 000689 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566 (1350)
Q Consensus 487 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 566 (1350)
|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++|++++++++++++.+++++++.++|+||||.+||+|.+
T Consensus 522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~ 601 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601 (694)
T ss_pred EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 567 LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
|||||||||+|||||+++|+|||||||||+||+++|+.+++.|.++.+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChHHHHhc
Q 000689 647 THDELIAK 654 (1350)
Q Consensus 647 ~~~~l~~~ 654 (1350)
+|+||+++
T Consensus 682 ~~~eLl~~ 689 (694)
T TIGR03375 682 PKDQVLEA 689 (694)
T ss_pred CHHHHHHH
Confidence 99999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-82 Score=814.11 Aligned_cols=553 Identities=25% Similarity=0.329 Sum_probs=487.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 754 PEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTK 833 (1350)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1350)
+.+..+...++++++..++....++++..+++....... ......+.+.++++.++..++.+++.++...++.++..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (686)
T TIGR03797 133 GARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDA 209 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666666666677777765542211 11223344455666677788899999999999999999
Q ss_pred HHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 834 RVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFP 913 (1350)
Q Consensus 834 ~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~p 913 (1350)
++|..+|+++++.|+.||++ +++|++++|+. |++.+++.+...+...+.+.+.+++.++++++++|++++++++++|
T Consensus 210 ~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 286 (686)
T TIGR03797 210 SLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALAL 286 (686)
T ss_pred HHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985 78999999997 8999999999888888888888888889999999999999999988
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000689 914 VVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQ 993 (1350)
Q Consensus 914 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1350)
+.++..++..+..+...++..+..++..+++.|+++|+++||+++.|+.+.++|.+..++..+...+..........+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (686)
T TIGR03797 287 VAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNA 366 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777777788888888899999999999999999999999999999999988888888888777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 000689 994 FCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAT 1073 (1350)
Q Consensus 994 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~ 1073 (1350)
++..+..++.+|+|++++..|.+++|.++++..+......++..+.....++..+..+.+|+.++++.+++.++..
T Consensus 367 ~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---- 442 (686)
T TIGR03797 367 VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc----
Confidence 8888889999999999999999999999998888888889999999999999999999999999998765532211
Q ss_pred CCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC
Q 000689 1074 PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153 (1350)
Q Consensus 1074 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~ 1153 (1350)
..+....|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1112345789999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
.+++|++|+||||||.+|+|||||||.++++ ++|+++++|++.++++++|+++|+||||.+||+|.+|||||||||+||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g 1313 (1350)
||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||+++++.||+|+||++|+|+|+|+|++|+++ +|
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~--~~ 676 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR--EG 676 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC--Cc
Confidence 9999999999999999999999999999999886 6899999999999999999999999999999999999987 89
Q ss_pred hhHHHHHHh
Q 000689 1314 CYARMIQLQ 1322 (1350)
Q Consensus 1314 ~y~~l~~~q 1322 (1350)
.|++|++.|
T Consensus 677 ~y~~l~~~q 685 (686)
T TIGR03797 677 LFAQLARRQ 685 (686)
T ss_pred HHHHHHHhc
Confidence 999999865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-82 Score=814.06 Aligned_cols=563 Identities=23% Similarity=0.376 Sum_probs=492.8
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFW 824 (1350)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 824 (1350)
+++++.+.++.+..+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666666666666777777777776543221 11222333444555666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 825 DIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRL 904 (1350)
Q Consensus 825 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l 904 (1350)
.+++.++..++|.++|+++++.|+.||++ +++|++++|++ |.+.+.+.+...+...+.+++.+++.++++++++|++
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999985 78999999998 9999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 905 ALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984 (1350)
Q Consensus 905 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1350)
++++++++|++++..++..+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|.+......+...+....
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888887777778878888888889999999999999999999999999999999988888887777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000689 985 AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTE 1064 (1350)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~ 1064 (1350)
.+....+..++..+..++++|+|++++..|.+++|.++++.........++..+......+..+..+.+|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77666777777778888999999999999999999999988888888899999999999999999999999999987665
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEE
Q 000689 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144 (1350)
Q Consensus 1065 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1144 (1350)
.+.... . ...+...|.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 458 ~~~~~~-~-~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 458 FINKKK-R-TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-c-cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432211 0 111234678999999999974 347999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccC-CCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1145 DGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1145 DG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~-~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
||+|+++++.+++|++|+||||||.||+|||||||.++ .++++|+++++|++.++++++|.++|+||||.+||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||||||+||||++++|+|||||||||+||++||+.|++.|++. +|+|+|+||||+++++.||+|+||++|+++|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHH
Q 000689 1304 SHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~~ 1320 (1350)
++|+++ +|.|++|++
T Consensus 693 ~~L~~~--~~~y~~l~~ 707 (708)
T TIGR01193 693 DELLDR--NGFYASLIH 707 (708)
T ss_pred HHHHhc--CCcHHHHhh
Confidence 999987 799999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-81 Score=792.48 Aligned_cols=566 Identities=32% Similarity=0.488 Sum_probs=496.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
++.++++.+++++. +++.+++.++..++....+.+++.++|...... . .. .+..+.+.+++++++..++.++..
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~~---~~~~~~~~~~~~~l~~~~~~~~~~ 86 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-D-RS---VLKWMPLVVIGLMILRGITSFISS 86 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-hh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777666444 344445555555555566667777887654311 1 11 111122223334555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
++..+.+.++..++|..+|+++++.|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (582)
T PRK11176 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 166 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T PRK11176 166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
....+...+..++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+++++.+.+|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~ 325 (582)
T PRK11176 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888777788888788888899999999999999999998888777788899999999999999999999999999865
Q ss_pred CCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
++.+. .....++..+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~~~---~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 326 QEKDE---GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CcCCC---CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 54221 111122334679999999999753 35799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCC-CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPD-ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 567 (1350)
+||+|+++++.+++|++|+||||||++|++||+|||.+|+++ .++++++++++.+++++++.+||+|+||.+|++|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 999999999999999999999999999999999999999764 7899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|.|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHhccCCcHHHHHHHHH
Q 000689 648 HDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~~~~ 667 (1350)
|++|+++ ++.|+++++.|
T Consensus 562 ~~~l~~~--~~~y~~l~~~~ 579 (582)
T PRK11176 562 HAELLAQ--NGVYAQLHKMQ 579 (582)
T ss_pred HHHHHhC--CChHHHHHHHH
Confidence 9999987 78999998765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-81 Score=785.20 Aligned_cols=565 Identities=22% Similarity=0.313 Sum_probs=480.4
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 747 RLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHA-YMIREIAKYCYLLIGLSSAELLFNTLQHSFWD 825 (1350)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 825 (1350)
+++++.++.++.+.++++++++..++....+++++.+++........ ........+...+++++++..++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777776666666667777776644211110 00001111223344556667788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 826 IVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLA 905 (1350)
Q Consensus 826 ~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~ 905 (1350)
.++.++..++|.++|+++++.|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 906 LVLIAVFPVVVAA-TVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984 (1350)
Q Consensus 906 lv~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1350)
+++++++|+.+++ .++..+..+...++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888876543 355556666667777888888999999999999999999999999999999999988888888888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000689 985 AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMV-SANGAAETLTLAPDFIKGGRAMRSVFDLLDRKT 1063 (1350)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~ 1063 (1350)
.+....+.+++..+..++++|+|.+++ .|.++.+.+++++.+... ...++..+......+.++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 877777788888888888899999884 788888887765544433 234555566677888899999999999998766
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEE
Q 000689 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143 (1350)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1143 (1350)
+.+..... . +....+.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|+
T Consensus 323 ~~~~~~~~--~-~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 323 EVTFPTTS--T-AAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCccc--C-CCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 53211111 1 11235789999999999753 24799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1144 iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
+||+|+++++.+++|++|+||||||+||++||+|||.+++++++|+++++|++.+++++++++ |+||||.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 999999999999999999999999999999999999999988999999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
||||||+|||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHHH
Q 000689 1304 SHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~~~ 1321 (1350)
+||+++ +|.|++||+.
T Consensus 558 ~~l~~~--~g~y~~l~~~ 573 (574)
T PRK11160 558 QELLAQ--QGRYYQLKQR 573 (574)
T ss_pred HHHHhc--CcHHHHHHhh
Confidence 999988 8999999863
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-84 Score=722.40 Aligned_cols=505 Identities=30% Similarity=0.432 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 813 ELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLV 892 (1350)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~ 892 (1350)
+.+++.++.+++..+.+-.++.+.-++|+|+.+.++.|+-. ..+|+++.-+.+..+.+. ++......+...+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 46778888999999999999999999999999999999864 568988877777666665 444433333333333333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHH
Q 000689 893 ACTAG-FVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNL 971 (1350)
Q Consensus 893 ~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~ 971 (1350)
+++.. ..++||.+++++.+..+.........-+..+++|++.....+..+...+++-+.+|||-|++|++..++|.+.+
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 33332 34689999888877766655544444444455666766777778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 972 QTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRA 1051 (1350)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 1051 (1350)
.+..+...+...-..+.......+..+...+...+.++++..+..++|+.+....+++...+|+--+..+...+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99887665544444444444444555555555666667777888999998888888888888888888888899999999
Q ss_pred HHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHH
Q 000689 1052 MRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALV 1131 (1350)
Q Consensus 1052 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL 1131 (1350)
++++++++++++|..+. ++.++-...+|.|+|+||+|.|. |++|||+||||++.||++||+|||||+||||++++|
T Consensus 509 mEnmfdllkee~eVvd~--P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlL 584 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDL--PGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL 584 (790)
T ss_pred HHHHHHHhhcCchhhcC--CCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHH
Confidence 99999999887776422 12222123679999999999996 567999999999999999999999999999999999
Q ss_pred hccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCc
Q 000689 1132 QRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGY 1211 (1350)
Q Consensus 1132 ~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gl 1211 (1350)
+||||.++|.|.|||+||+++..++||++||+||||.+||+.||..||.|++|++++||+++|++.|++||-|.++|+||
T Consensus 585 fRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 585 FRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred HHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEE
Q 000689 1212 KTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAV 1291 (1350)
Q Consensus 1212 dt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~V 1291 (1350)
+|.|||+|-.||||||||+||||++|++|.|++||||||+||..||+.||.+|.+.+.+||.|+||||||||.+||.|+|
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEecChhHHhhcCCCchhHHHHHHhhhc
Q 000689 1292 IDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1292 l~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
+++|+|+|.|+|+||+++ ++|.|++||+.|+..
T Consensus 745 i~~G~IvErG~HeeLl~r-dgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKR-DGGAYADMWQAQQAM 777 (790)
T ss_pred EeCCeEeecCcHHHHHhc-cCCcHHHHHHHHHhc
Confidence 999999999999999998 599999999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-81 Score=801.71 Aligned_cols=568 Identities=28% Similarity=0.397 Sum_probs=501.7
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWA 166 (1350)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1350)
..+++++++++++++ .+...++++++..++....|++++.++|.+.... +. ..+..+++.++++.++.+++.++
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~----~~l~~l~~~~~~~~~~~~~~~~l 198 (694)
T TIGR01846 125 FGFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GL----STLSVLALAMLAVAIFEPALGGL 198 (694)
T ss_pred CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-Ch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766543 3344455555555556666777888998765321 11 12222333444455556778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246 (1350)
Q Consensus 167 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1350)
+.++....+.++..++|.++|+|++++|+.||++. ++|++++|+ +|++.+++++...+..++.++..+++.+++++++
T Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 276 (694)
T TIGR01846 199 RTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY 276 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 999999999 6999999999888888887777777778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000689 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326 (1350)
Q Consensus 247 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~ 326 (1350)
+|.+++++++.+|+++++..++.++.++..++..+..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+
T Consensus 277 ~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 356 (694)
T TIGR01846 277 SPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR 356 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888898888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000689 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 406 (1350)
.....+....+..++..+..++++|+|++++.+|.+|.|.++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus 357 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 436 (694)
T TIGR01846 357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN 436 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888899999999999999999999999888888888999999999999999999999999998
Q ss_pred cCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 000689 407 HKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486 (1350)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 486 (1350)
.+++.+.. .....+...+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+
T Consensus 437 ~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 437 SPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred CCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 76653221 111122345789999999999743 346999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCC
Q 000689 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566 (1350)
Q Consensus 487 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 566 (1350)
|++||+|+++++.+++|++|+||+|+|++|++||+|||.+++|+.++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~ 593 (694)
T TIGR01846 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN 593 (694)
T ss_pred EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 567 LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|
T Consensus 594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChHHHHhccCCcHHHHHHHHH
Q 000689 647 THDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 647 ~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
+|+||+++ ++.|+++++.|
T Consensus 674 ~~~~l~~~--~~~y~~l~~~~ 692 (694)
T TIGR01846 674 RHEELLAL--QGLYARLWQQQ 692 (694)
T ss_pred CHHHHHHc--CChHHHHHHhh
Confidence 99999987 79999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-81 Score=808.73 Aligned_cols=561 Identities=24% Similarity=0.313 Sum_probs=486.3
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 748 LAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIV 827 (1350)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 827 (1350)
++.+.++.+..+...++++++..++....+++...+++........ .....+...++++.++..++.+++.++...+
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555566666666654322111 1122234445555666788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 828 GENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALV 907 (1350)
Q Consensus 828 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv 907 (1350)
+.++..++|.++|+++++.|++||++ +++|++++|+..| +.+++++...+..++.+++.+++.++++++++|+++++
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 7899999999988 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000689 908 LIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGS 987 (1350)
Q Consensus 908 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1350)
+++.+|+.++..++..+..+...++..+...+..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+.......
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777767667777777888899999999999999999999999999999988888887777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000689 988 GYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEP 1067 (1350)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~ 1067 (1350)
...+.+++..+..++++|+|++++..|.+++|.++++..+......++..+......+..+..+++|+.++++.+++.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 77778888888889999999999999999999999888888888899999999999999999999999999987665432
Q ss_pred CCC---CCCCCC-CCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEE
Q 000689 1068 DDP---DATPVP-DRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143 (1350)
Q Consensus 1068 ~~~---~~~~~~-~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1143 (1350)
... .....+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 110 000111 2345789999999999853 35799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1144 iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
+||+|+++++.+++|++|+||||||.+|+|||||||.++.++++|+++++|++.++++++|.++|+||||.+||+|.+||
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||||||+||||++++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+||++|+|+|.|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHH
Q 000689 1304 SHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~ 1319 (1350)
+||+++ +|.|++|+
T Consensus 696 ~~Ll~~--~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAV--GGAYARLI 709 (710)
T ss_pred HHHHHc--CCcHHHHh
Confidence 999987 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=725.50 Aligned_cols=552 Identities=27% Similarity=0.350 Sum_probs=483.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 107 GSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKY 186 (1350)
Q Consensus 107 ~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 186 (1350)
..++..+.+++.....+++...++.+..... ...+..+...+++..++..++.+.+.....+.+.++...+|..+
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~ 79 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV 79 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555666666666543211 22333344445555556677788888888889999999999999
Q ss_pred HHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000689 187 LEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGA 266 (1350)
Q Consensus 187 ~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~ 266 (1350)
++|+.+++..|-.+. ++|+..+.+...++.++..++..++.++...+..++.++..|+++|.-++++++++|++.+++.
T Consensus 80 l~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 80 LDKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 267 IHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSY 346 (1350)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1350)
++++..++..+++...+..+++.+-+.++|+.|+|+|+..+...+++.+..++.++..++.-++.-+...+..++.+++.
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887777666777788888888
Q ss_pred HHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCc
Q 000689 347 ALLLWYGGYLVRH-HFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVS 425 (1350)
Q Consensus 347 ~~~~~~g~~lv~~-g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 425 (1350)
+++..+-+..... |.++....+.++...--.+.|+..+...++.-+.+.++.+.++.+++.+++..+............
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 7776665555566 788877777666655666789999999999999999999999999988765322111001111122
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..++++|++|.||+.+ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus 319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 3456669999998643 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
++||+|+|+||++||||||+++++++++++++++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++||||++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~ 665 (1350)
+++|||||||+||.+||+.|++.|.++.+++|+|+||||+..+++||+|+|||+|+++|+|+|++|.++ +|.|++|+.
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~--~~~y~~l~~ 553 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYANLLK 553 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc--CcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 899999998
Q ss_pred HHHH
Q 000689 666 MQEA 669 (1350)
Q Consensus 666 ~~~~ 669 (1350)
.|..
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 7753
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-80 Score=785.76 Aligned_cols=566 Identities=26% Similarity=0.348 Sum_probs=481.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
+++++.|.+++++ .+++.+++.++..++.+..|.+++.++|....... .. . .....+++.++++.++.+++.+++.
T Consensus 11 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (592)
T PRK10790 11 LKRLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LP-L-GLVAGLAAAYVGLQLLAAGLHYAQS 86 (592)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-h-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556555433 34556666677777777788889999987543211 11 1 1111122223334445566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
+.....+.++..++|.++|+++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998 9999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887788888888888888888999999999999999999999999999999998888888777766
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000689 329 FAKGMG-LGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDH 407 (1350)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 407 (1350)
...++. .++..++..+..++++++++. +..|.++.|.+++++.+......|+..+...+..+.+++.+++|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 655543 233333333332333333444 578999999999998888888889999999999999999999999999986
Q ss_pred CCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 000689 408 KPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487 (1350)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 487 (1350)
+++... . .......+.|+++||+|+|++ +.++|+|+||++++||++||||+||||||||+++|+|+|+|++|+|
T Consensus 325 ~~~~~~--~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I 398 (592)
T PRK10790 325 PRQQYG--N--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI 398 (592)
T ss_pred CCccCC--C--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 543211 1 111223467999999999974 3469999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCC
Q 000689 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 488 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 567 (1350)
.+||.|+++++.+++|++|+||||||++|++||+|||++|+ ++++++++++++.+++++++.++|+||||.+|++|.+|
T Consensus 399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999998 68899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHhccCCcHHHHHHHHHHH
Q 000689 648 HDELIAKGENGVYAKLIRMQEA 669 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~~~~~~ 669 (1350)
|+||+++ ++.|+++++.|..
T Consensus 558 ~~~L~~~--~~~y~~l~~~~~~ 577 (592)
T PRK10790 558 HQQLLAA--QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHHhC--CCHHHHHHHHHhh
Confidence 9999987 7999999987654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-81 Score=716.25 Aligned_cols=571 Identities=27% Similarity=0.357 Sum_probs=477.2
Q ss_pred hHHHHHHhhchhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDYV----LMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWAS 163 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1350)
..+.+..|.++.... .++.++++.+.+.......|.+++.++|........+ .........+..+.+..+...++
T Consensus 12 ~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F 90 (591)
T KOG0057|consen 12 ILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVF 90 (591)
T ss_pred HHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHH
Confidence 345555555543322 2222333333335566667778888888763111111 11111222334455666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 164 SWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVG 243 (1350)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1350)
..++...+.++.+++.++.-.++|++++.++.+||.+. .+|++.+.+..-...|...+.-.+..++..++.+.......
T Consensus 91 ~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 91 NELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999998888777777766554444332
Q ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000689 244 -FSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQR 322 (1350)
Q Consensus 244 -~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~ 322 (1350)
.-.....+++++..+..+..+......+..++.++..++.+.+.+.+-|.+.|..+||+||.|+++.++|...+.++.+
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~ 249 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER 249 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3345666777777766777667777777778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 323 LGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIF 402 (1350)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 402 (1350)
.+.+.....++.......+.....+.+.+.|..-+.+|.+|.|+++........+..|+..+...+..+.++..-++-++
T Consensus 250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~ 329 (591)
T KOG0057|consen 250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF 329 (591)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 98888777777666666666666777777888888899999999998877777788899999999999998888888777
Q ss_pred HHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000689 403 RIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 482 (1350)
...+....+. +...+....++.|+|+||+|+|+ +++++|+++||+|++||+|||||+|||||||++++|+||++
T Consensus 330 ~l~~~~~~i~---~~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d- 403 (591)
T KOG0057|consen 330 ILLEVDEDIQ---EAALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD- 403 (591)
T ss_pred hhhhhhhhhh---hccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-
Confidence 6654332221 11123334567899999999997 44569999999999999999999999999999999999999
Q ss_pred CCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcC
Q 000689 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRE 562 (1350)
Q Consensus 483 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~ 562 (1350)
++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+|.++++++.++||.+++||-+++||+||+|.|||
T Consensus 404 ~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 404 YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000689 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642 (1350)
Q Consensus 563 ~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 642 (1350)
+|..|||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+|+||++++++||+|++|++|++
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTV 563 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCee
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEecChHHHHhccCCcHHHHHHHHHH
Q 000689 643 SEIGTHDELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 643 ~~~g~~~~l~~~~~~~~y~~l~~~~~ 668 (1350)
.|.|+|+||++. .+.|+++|..|.
T Consensus 564 ~e~gth~ell~~--s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 564 KEYGTHSELLAP--SELYADLWTTQT 587 (591)
T ss_pred EEeccHHHHhhh--hhHHHHHhcccc
Confidence 999999999995 899999997654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-81 Score=853.67 Aligned_cols=568 Identities=20% Similarity=0.251 Sum_probs=469.4
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 86 PVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
.+.+..++.|++...+...++.+++.++..++..+.+++++.+.+........ ... ..+..++++++++..++.+
T Consensus 949 ~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~-~~~----~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 949 QVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQ-NNT----SLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred cccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCc----chHHHHHHHHHHHHHHHHH
Confidence 45677777777654333322333333333344445566777776532110000 100 1122344455666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
+..+++.+.+.+...++|.++|++++++|++|||++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999998 9999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGY 325 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~ 325 (1350)
.+|.+++++++++++++++..++.+..++..+......+.+.+++.|+++|+++||+|++|+.+.+++.+..+...+..+
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887777776666666667777777777777778888899999999999999999999999999999988888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 326 KSGFAKGMGLGATYFVVFCSYALLLWYGGYLVR-HHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRI 404 (1350)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 404 (1350)
.......+......++.. ++++++|+..+. .|.++.|.+.+++.+......++..+...+..++.+++|++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555444443333322 233444555554 5789999998888888888889999999999999999999999999
Q ss_pred HccCCCCCCCCCCCccCC--CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000689 405 IDHKPSIDRNSESGLELD--SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 405 l~~~~~~~~~~~~~~~~~--~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 482 (1350)
++.++|.+...+...+++ +.+|.|+|+||+|+|+++. .++|+|+||+|++||++||||+||||||||+++|+|+|+|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 987665321111111111 3468899999999997542 3699999999999999999999999999999999999999
Q ss_pred CCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcC
Q 000689 483 TSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRE 562 (1350)
Q Consensus 483 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~ 562 (1350)
++|+|.|||+|+++++.+++|++|++|||||.||+|||||||.... +++++++++|++.+++++++.++|+||||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 9999999999999999999999999999999999999999998433 588999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000689 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642 (1350)
Q Consensus 563 ~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 642 (1350)
+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEecChHHHHhccCCcHHHHHHHH
Q 000689 643 SEIGTHDELIAKGENGVYAKLIRM 666 (1350)
Q Consensus 643 ~~~g~~~~l~~~~~~~~y~~l~~~ 666 (1350)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~--~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ--RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC--CCHHHHHHHH
Confidence 999999999987 6999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-80 Score=797.47 Aligned_cols=553 Identities=24% Similarity=0.366 Sum_probs=482.6
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 750 KMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGE 829 (1350)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 829 (1350)
.+.++.+..+...++++++..++....++++..+++........ .....+...++++.++..++.+++.++..+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 140 STLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455455555555555555666666666666654322111 112223334445556677888999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 830 NLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLI 909 (1350)
Q Consensus 830 ~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l 909 (1350)
++..++|..+|+++++.|++| + .+++|++++|+ +|++.+++.+...+...+..++.+++.++++++++|+++++++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 292 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPL 292 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999998 4 36899999999 8999999999988888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 000689 910 AVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGY 989 (1350)
Q Consensus 910 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1350)
+++|+.++..++..+..+...++..+..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.........
T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (694)
T TIGR03375 293 VAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLAT 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877777777777888888888999999999999999999999999999999999998888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 000689 990 GVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDD 1069 (1350)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~ 1069 (1350)
.+.+.+..+..++.+|+|++++.+|.+++|.++++..+......++..+.....++..+..+.+|+.++++.+++.++..
T Consensus 373 ~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 373 NFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 78888888888999999999999999999999998888888889999999999999999999999999998776533211
Q ss_pred CCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccC
Q 000689 1070 PDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1070 ~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di 1149 (1350)
. ....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 453 ~--~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 453 R--FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred C--CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1 11112345789999999999753 34799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1150 RKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1150 ~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
++++++++|++|+||||||++|+|||||||.+++++++++|+++|++.++++++|.++|+||||.+||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999976
Q ss_pred CCC
Q 000689 1310 NPD 1312 (1350)
Q Consensus 1310 ~~~ 1312 (1350)
.+.
T Consensus 690 ~~~ 692 (694)
T TIGR03375 690 LRK 692 (694)
T ss_pred hhc
Confidence 333
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-81 Score=847.22 Aligned_cols=644 Identities=17% Similarity=0.207 Sum_probs=466.5
Q ss_pred ccchhhhhccccccc-cccCCeeecCCCCCCCCCCCCCCCCC-------Cchhhhhccch---hhhhhccc-------CC
Q 000689 6 SHQQEIKKIEQWRWS-EMQGLELVSSPPFNNHNNSNNNYANP-------SPQAQAQETTT---TTKRQMEN-------NS 67 (1350)
Q Consensus 6 ~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~-------~~ 67 (1350)
+|++++++.+ |.| +|++|++++.|++.++.+....+... +.+..+...+. ........ ..
T Consensus 797 TH~l~~l~~a--D~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1622)
T PLN03130 797 TNQLHFLSQV--DRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKD 874 (1622)
T ss_pred ECCHhHHHhC--CEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 6999999998 999 99999999999987765433211100 00000000000 00000000 00
Q ss_pred CCCCCCCC-----CCCCCCCCCccchHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhH
Q 000689 68 SSSSSAAN-----SEPKKPSDVTPVGLGELFRFADSLDY-VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDK 141 (1350)
Q Consensus 68 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~ 141 (1350)
........ ...++......+.+..+..|++.... ..+++.+++.++..++....+++++.+.|..... ...
T Consensus 875 ~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~-- 951 (1622)
T PLN03130 875 SSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-THG-- 951 (1622)
T ss_pred ccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCc--
Confidence 00000000 00011112334567778888654322 1222222333333333334455666666642211 110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHH
Q 000689 142 MMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDA 221 (1350)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~ 221 (1350)
...+.+++++++++..++.+++.+++.+.+.+...++|.++|++++++|++|||++ ++|++++|+++|++.+++.
T Consensus 952 ----~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~ 1026 (1622)
T PLN03130 952 ----PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRN 1026 (1622)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHH
Confidence 11233445556666777888888888999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q 000689 222 ISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAV-IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVV 300 (1350)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~v 300 (1350)
+...+..++..++.+++.++++++++|. .++++++++++++ +..++.+..++..+......+...+++.|+++|++||
T Consensus 1027 l~~~~~~~~~~~~~~i~~~i~i~~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tI 1105 (1622)
T PLN03130 1027 VAVFVNMFLGQIFQLLSTFVLIGIVSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTI 1105 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHH
Confidence 9999999999999988888888888873 3333333333222 2333445555555556666788899999999999999
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cCHHHHHHHH
Q 000689 301 FAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHF---------TNGGLAIATM 371 (1350)
Q Consensus 301 k~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~---------~~~g~~~~~~ 371 (1350)
|+|++++++.+.+.+..+...+..+.......+......+ +..+++++.|...+..+. .+.|.+++
T Consensus 1106 raf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls-- 1180 (1622)
T PLN03130 1106 RAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS-- 1180 (1622)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH--
Confidence 9999998777766666555444333222222222111111 122222233333344321 12232232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCC--CCcceEEEEEEEEECCCCCCCccccce
Q 000689 372 FAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELD--SVSGLIELKHVDFSYPSRPEVRILNNF 449 (1350)
Q Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~~~v~f~y~~~~~~~~l~~i 449 (1350)
+.+....++..+...+..++.+..|.+|+.++++.++|.+...+...+++ +.+|.|+|+||+|+|++. .++||+|+
T Consensus 1181 -~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~i 1258 (1622)
T PLN03130 1181 -YALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGL 1258 (1622)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecce
Confidence 33334445666667778889999999999999987765422111111111 346889999999999642 24699999
Q ss_pred EEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCC
Q 000689 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP 529 (1350)
Q Consensus 450 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~ 529 (1350)
||+|++||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||.||+|||||||.++.
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~- 1337 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN- 1337 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHH
Q 000689 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609 (1350)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l 609 (1350)
+++++++++|++.++++++|.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|+++|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHHH
Q 000689 610 DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEA 669 (1350)
Q Consensus 610 ~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~ 669 (1350)
++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++ ++.|++|++....
T Consensus 1418 ~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~-~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE-GSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCC-CCHHHHHHHHcCh
Confidence 9998999999999999999999999999999999999999999863 5899999876543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-80 Score=719.98 Aligned_cols=551 Identities=26% Similarity=0.362 Sum_probs=488.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 763 SVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAA 842 (1350)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 842 (1350)
.+++.+.+++....+++++..+........ ......+...++++.++..++.+.+......++.++...+|+.++++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666667777777766554321 22344455666677777888888999999999999999999999999
Q ss_pred HHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 843 VLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQ 922 (1350)
Q Consensus 843 ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~ 922 (1350)
+.+.+..|-.+ .++|+....+...++.++.++...++.+..+.+..++.++.+++++|.-+++++.++|++.++.++.
T Consensus 83 l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000689 923 KMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYAL 1002 (1350)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1350)
....+..+++.-..+...+.++.+.+.|+.|+|+|+..+...++..+...+..+..+..-++.-....+..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999888888888887777777777777788888888888
Q ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCC
Q 000689 1003 GLWYSSWLVKH-GISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRG 1081 (1350)
Q Consensus 1003 ~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g 1081 (1350)
+..|.+..... |.+++...+.+++..--.+.|+.++...++.-..+..+.+.++.+++.+.+..+..... ........
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~-~~~~~~~~ 319 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA-EVANEPPI 319 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc-ccccCCCc
Confidence 87777766666 88888877777777777788999999999999999888999999888776543322110 11112234
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
+|+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 566779999998653 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCC
Q 000689 1162 AIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241 (1350)
Q Consensus 1162 ~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ 1241 (1350)
++|||+|++|+|||||||.+++++++|+|++++++.+++.+|+.. |+|+||++||+|.+|||||+||+++|||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1242 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1242 ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
++|||||||+||.+||+.|++.|.++.+++|||+||||+..+++||+|+|||+||++|+|+|++|+++ +|.|++|+..
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~--~~~y~~l~~~ 554 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK--QGLYANLLKQ 554 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc--CcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 8999999998
Q ss_pred hhh
Q 000689 1322 QRF 1324 (1350)
Q Consensus 1322 q~~ 1324 (1350)
|+.
T Consensus 555 q~~ 557 (559)
T COG4988 555 QEG 557 (559)
T ss_pred Hhc
Confidence 754
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-80 Score=779.98 Aligned_cols=567 Identities=23% Similarity=0.334 Sum_probs=478.0
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFW 824 (1350)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 824 (1350)
++++..+..+.+..+.+.+++.++..++....++++..+++.......... .....+.++++++.++..++.+++.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666777777777777778888888776543211111 1111223334555556777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 825 DIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRL 904 (1350)
Q Consensus 825 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l 904 (1350)
..++.+...++|.++|+++++.|.+||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 905 ALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984 (1350)
Q Consensus 905 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1350)
++++++++|+.++...+.....+...++..+...+...++.|++.|+++||+|+.++.+.++|.+..+...+...+....
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777776666667667777777788889999999999999999999999999998888777666555554
Q ss_pred Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000689 985 AGSG-YGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKT 1063 (1350)
Q Consensus 985 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~ 1063 (1350)
.+.. ..+..++..+...+..++++. +..|.++++.++.+..+......++..+......+.++..+++|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 222333332222222223333 57899999998888888888888999999999999999999999999987654
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEE
Q 000689 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143 (1350)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1143 (1350)
+.... . .. +...+.|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 327 ~~~~~--~--~~-~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 327 QQYGN--D--DR-PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred ccCCC--C--cc-CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 32111 1 11 123468999999999974 34799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1144 iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
+||+|+++++.+++|++|+||||||.+|+|||||||.+++ +++|++++++++.++++++|.++|+||||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999997 689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||||||||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHHHhhhc
Q 000689 1304 SHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
+||+++ ++.|++|++.|...
T Consensus 559 ~~L~~~--~~~y~~l~~~~~~~ 578 (592)
T PRK10790 559 QQLLAA--QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHhC--CCHHHHHHHHHhhh
Confidence 999988 79999999987554
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-80 Score=778.16 Aligned_cols=565 Identities=34% Similarity=0.509 Sum_probs=506.4
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 90 GELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEIS 169 (1350)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1350)
+.++++.++++ ..++++++++++.+++.+..|++++.++|....... . ..+..++..++++.++.+++.++..+
T Consensus 3 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 76 (571)
T TIGR02203 3 RRLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--R---SVLWWVPLVVIGLAVLRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--h---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666553 456677777888888888888888888886443211 1 11222333344555566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000689 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQ 249 (1350)
Q Consensus 170 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1350)
+..+.+.++..++|..+|+++++.|.++|++. ++|++++|+++|++.+++++...+..++.++..+++.++++++++|.
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 250 LALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGF 329 (1350)
Q Consensus 250 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 329 (1350)
+++++++.+|+.+++..++.++.++...+.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+...
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000689 330 AKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKP 409 (1350)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 409 (1350)
..+....+..++.++..++++++|++++.+|.+|.|.+++++.++.....|+..+...+..+++++.+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999998888889999999999999999999999999998765
Q ss_pred CCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 000689 410 SIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489 (1350)
Q Consensus 410 ~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i 489 (1350)
+.+.. .....+..+.|+++||+|+|+++ +.++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|++
T Consensus 316 ~~~~~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 316 EKDTG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 53211 11112234679999999999754 357999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCC-CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 490 DGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 490 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
||+++++++.+++|++|+||||+|++|++||+|||.++++ +.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS 471 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence 9999999999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~ 551 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH 551 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhccCCcHHHHHHHHH
Q 000689 649 DELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 649 ~~l~~~~~~~~y~~l~~~~ 667 (1350)
++++++ ++.|+++++.+
T Consensus 552 ~~l~~~--~~~~~~~~~~~ 568 (571)
T TIGR02203 552 NELLAR--NGLYAQLHNMQ 568 (571)
T ss_pred HHHHHc--CCHHHHHHHHh
Confidence 999987 68999887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-80 Score=778.83 Aligned_cols=563 Identities=29% Similarity=0.475 Sum_probs=484.6
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 749 AKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVG 828 (1350)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 828 (1350)
+++.++.++.++..+++.++..+.....++++..+++........ .....+...++++.++..++.+++.++..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444445555555555544322111 11112223344466667788888888999999
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 829 ENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVL 908 (1350)
Q Consensus 829 ~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~ 908 (1350)
.+....+|..+|+++++.|..+|++ ...|++++|+++|++.+...+...+..++..++.+++.++++++++|++++++
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 171 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000689 909 IAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSG 988 (1350)
Q Consensus 909 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1350)
++++|+.++.........+...++.++...+...++.|.++|+++||+|+.++.+.++|.+..+...+...+........
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSIS 251 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777777777777777777888888999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000689 989 YGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPD 1068 (1350)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~ 1068 (1350)
..+..++..+...+++++|++++..|.++++.++.++.+......++..+......+.++..+.+|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 77777777788888899999999999999999988888888888899999999999999999999999998765442211
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCcc
Q 000689 1069 DPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148 (1350)
Q Consensus 1069 ~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~d 1148 (1350)
.. . .++..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 332 ~~---~-~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 332 KR---V-IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred Cc---C-CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 11 1 12234679999999999754 3579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCC-CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1149 IRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES-ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1149 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~-~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
+++++.+++|++|+||||||++|+|||||||.+++++ ++|++++++++.++++++++++|+||||.+||+|.+||||||
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 9999999999999999999999999999999998754 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|||+|||||+++|+|||||||||+||++||+.+.++|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHhh
Q 000689 1308 KNNPDGCYARMIQLQR 1323 (1350)
Q Consensus 1308 ~~~~~g~y~~l~~~q~ 1323 (1350)
++ ++.|++|++.|.
T Consensus 567 ~~--~~~y~~l~~~~~ 580 (582)
T PRK11176 567 AQ--NGVYAQLHKMQF 580 (582)
T ss_pred hC--CChHHHHHHHHh
Confidence 88 799999998763
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-79 Score=770.12 Aligned_cols=564 Identities=27% Similarity=0.353 Sum_probs=489.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
++++++|++++++ .++++++++++..++.+..|++++.++|.+... . . . . .+.+.+++++++.++..++..
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-~--~-~---~-~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSK-S--D-V---L-PTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c--c-H---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 5677888777644 455677777777888888888999999976432 1 1 1 0 111111222233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
++......++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+.+.+..++..++.+++.++++++++|
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW 156 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777799999999999999988 9999999999999999999988888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (585)
T TIGR01192 157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL 236 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888889999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
...++...+..++..+..++++++|++++.+|.++.|.+++++.+......|+.++...+..+..++.+.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~ 316 (585)
T TIGR01192 237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV 316 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77777777777777778888899999999999999999999888888888899999999999999999999999999875
Q ss_pred CCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
++.++. ......+...+.|+++||+|+|++. .++|+|+||++++||++||+||||||||||+++|+|+|+|++|+|.
T Consensus 317 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 317 FQREEP-ADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred ccccCC-ccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 543211 1111112234679999999999742 3689999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
+||.++++++.+++|++++||+|+|++|++|++|||.++.+++++++++++++.+++++++.++|+|++|.+|++|.+||
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS 473 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS 473 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++++..||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHhccCCcHHHHHHHHH
Q 000689 649 DELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 649 ~~l~~~~~~~~y~~l~~~~ 667 (1350)
++++++ ++.|+++++.+
T Consensus 554 ~~l~~~--~~~y~~l~~~~ 570 (585)
T TIGR01192 554 QELIQK--DGRFYKLLRRS 570 (585)
T ss_pred HHHHHC--CChHHHHHHhC
Confidence 999987 79999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-80 Score=770.99 Aligned_cols=526 Identities=24% Similarity=0.277 Sum_probs=452.6
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 90 GELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEIS 169 (1350)
Q Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1350)
+++++|.+++++ .+++++++.++..++....|++++.++|...... . .. ........++++.++..++.++..+
T Consensus 2 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (529)
T TIGR02868 2 LRILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMP---P-VL-YLSVAAVAVRAFGIGRAVFRYLERL 75 (529)
T ss_pred hhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---h-hH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766644 3455566666666666677778888888654211 1 11 0111111122234455677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000689 170 CWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQ 249 (1350)
Q Consensus 170 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1350)
+..+.+.++..++|.++|+|++++|.+||++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 76 VGHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88899999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 250 LALVTLAVVPLIAVIGAIHA-TSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 250 l~lv~l~~~pl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
+++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888766654444 44456667778888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
...+...++..++..+..++++|+|++++.+|.++.|.+++++++......|+..+...+..+++++++.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888888888899999999999999999999988888888889899999999999999999999999876
Q ss_pred CCCCCCCCC-CccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 000689 409 PSIDRNSES-GLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487 (1350)
Q Consensus 409 ~~~~~~~~~-~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 487 (1350)
++.+..... .....+..+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 543211110 11111234679999999999753 369999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCC
Q 000689 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 488 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 567 (1350)
.+||+|++++ .+++|++|+||||+|+||++||+|||++|+|++++++++++++.+++++++.+||+||||.+||+|.+|
T Consensus 393 ~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 393 TLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred EECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCc
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRL 625 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 625 (1350)
||||||||+||||++++|+|||||||||+||+++|+.|++.+.++.+++|+|+||||+
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-79 Score=770.84 Aligned_cols=566 Identities=27% Similarity=0.382 Sum_probs=486.4
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAE 167 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1350)
.++++++++++++ ..+.+.++++++..++.+..|++++.++|.+... . .. ..+.+.+++++++..+..++.
T Consensus 6 ~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~---~~----~~~~~~~~~~~~~~~~~~~~~ 76 (588)
T PRK13657 6 LYARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGK-G---DI----FPLLAAWAGFGLFNIIAGVLV 76 (588)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---cH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3566777766553 3445566666666677777788889999876432 1 11 111122222223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 168 ISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAV 247 (1350)
Q Consensus 168 ~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1350)
..+..+...++..++|.++|+|++++|..+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++
T Consensus 77 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK13657 77 ARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMN 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666677799999999999999988 999999999999999998888888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000689 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 248 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||.|+.++.+.++|.+..++..+...+.
T Consensus 156 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
T PRK13657 156 WRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPV 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888889999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDH 407 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 407 (1350)
....++...+..++..+..++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..++.+.+|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 315 (588)
T PRK13657 236 LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA 315 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777777777777778888889999999999999999999988888888889999999999999999999999999987
Q ss_pred CCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 000689 408 KPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487 (1350)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 487 (1350)
+++.+.. ......+...+.|+++||+|+|+++ +++|+|+||++++||+++|||+||||||||+++|+|+|+|++|+|
T Consensus 316 ~~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 316 VPDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CcccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 5542211 1111112234579999999999742 369999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCC
Q 000689 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 488 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 567 (1350)
.+||.|+++++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998878999999999999999999999999999999999
Q ss_pred hHHHHhccCCcHHHHHHHHHH
Q 000689 648 HDELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~~~~~ 668 (1350)
|++|+++ ++.|++++..+.
T Consensus 553 ~~~l~~~--~~~y~~l~~~~~ 571 (588)
T PRK13657 553 FDELVAR--GGRFAALLRAQG 571 (588)
T ss_pred HHHHHHC--CChHHHHHHHhh
Confidence 9999987 789999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-79 Score=785.14 Aligned_cols=557 Identities=27% Similarity=0.407 Sum_probs=488.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 754 PEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTK 833 (1350)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1350)
+.+..+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++...++.++..
T Consensus 136 ~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (694)
T TIGR01846 136 RYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDV 212 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555566666666665542211 11223344455566667788899999999999999999
Q ss_pred HHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 834 RVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFP 913 (1350)
Q Consensus 834 ~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~p 913 (1350)
++|.++|+++++.|+.||++ +++|++++|+ +|++.+++++...+..++.+++.+++.++++++++|++++++++++|
T Consensus 213 ~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 213 ELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 7899999999 69999999998888888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000689 914 VVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQ 993 (1350)
Q Consensus 914 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1350)
++++..++.....++..++..+..++..+.+.|+++|+++||++|.|+.+.++|.+..++..+...+..........+.+
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766666667777777888899999999999999999999999999999999988888888888777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 000689 994 FCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDAT 1073 (1350)
Q Consensus 994 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~ 1073 (1350)
++..+..++.+|+|++++..|.+++|.++++..+......++..+......+.++..+++|+.++++.+++.+.. ..
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~- 446 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GL- 446 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CC-
Confidence 888888899999999999999999999998888888888999999999999999999999999999876653321 11
Q ss_pred CCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC
Q 000689 1074 PVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN 1153 (1350)
Q Consensus 1074 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~ 1153 (1350)
...+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++
T Consensus 447 ~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~ 525 (694)
T TIGR01846 447 AALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD 525 (694)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC
Confidence 1112345789999999999754 346999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
.+++|++|+||||||.+|++||||||.+++++++++++++|++.+++++++.++|+||||.++++|.+||||||||++||
T Consensus 526 ~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lA 605 (694)
T TIGR01846 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIA 605 (694)
T ss_pred HHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g 1313 (1350)
||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|++|+++ +|
T Consensus 606 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~--~~ 683 (694)
T TIGR01846 606 RALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL--QG 683 (694)
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc--CC
Confidence 9999999999999999999999999999999998889999999999999999999999999999999999999987 79
Q ss_pred hhHHHHHHh
Q 000689 1314 CYARMIQLQ 1322 (1350)
Q Consensus 1314 ~y~~l~~~q 1322 (1350)
.|++|++.|
T Consensus 684 ~y~~l~~~~ 692 (694)
T TIGR01846 684 LYARLWQQQ 692 (694)
T ss_pred hHHHHHHhh
Confidence 999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-79 Score=766.34 Aligned_cols=541 Identities=26% Similarity=0.387 Sum_probs=475.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh
Q 000689 118 FPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQY 197 (1350)
Q Consensus 118 ~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~ 197 (1350)
..+.|++++.++|.+.....+. ..+..+...++++.++.+++.++..++....+.++..++|.++|+|++++|.+|
T Consensus 11 ~~~~p~~~~~iid~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHMTT----GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHhccCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3445556788888654321111 112223333333444556677787888888999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 198 FDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVG-FSAVWQLALVTLAVVPLIAVIGAIHATSLAKLA 276 (1350)
Q Consensus 198 fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~ 276 (1350)
|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++..
T Consensus 87 ~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 87 YLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred HcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 99999999999999999888888888888776666666555 589999999999999999999888999999989
Q ss_pred HHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 277 GKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYL 356 (1350)
Q Consensus 277 ~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 356 (1350)
++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+...++...+..++.++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 245 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888887777777777777778888999999
Q ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEE
Q 000689 357 VRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFS 436 (1350)
Q Consensus 357 v~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~ 436 (1350)
+.+|.+|.|.+++++.+......|+..+...+..+.+++++.+|+.++++.+++.+. .....+...+.|+++||+|+
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCCCCCCCcEEEEEEEEE
Confidence 999999999999998888888889999999999999999999999999987654321 11112223467999999999
Q ss_pred CCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcc
Q 000689 437 YPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALF 516 (1350)
Q Consensus 437 y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf 516 (1350)
|+.. +.++|+|+||++++|++++|+||||||||||+++|+|+|+|++|+|.+||+++.+++.+++|++|+||+|+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCC
Q 000689 517 ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596 (1350)
Q Consensus 517 ~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~ 596 (1350)
++|++|||+++.++.++++++++++.+++++++.++|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHHH
Q 000689 597 LDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEA 669 (1350)
Q Consensus 597 lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~ 669 (1350)
||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|++++++ ++.|+++++.|..
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~y~~l~~~~~~ 552 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWYRDMYRYQQL 552 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc--CChHHHHHHHhhh
Confidence 9999999999999998889999999999999999999999999999999999999987 7899999987643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-78 Score=766.44 Aligned_cols=570 Identities=35% Similarity=0.520 Sum_probs=495.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168 (1350)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1350)
++.+++|.+++++ .+.+.+++.++.+++....|++++.++|...... +.. .+..+..+++++.++..++.+++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 79 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-SSG----LLNRYFAFLLVVALVLALGTAARF 79 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777665543 3455666667777777778888899998743211 111 111222223333444556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVW 248 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (1350)
++..+++.++..++|..+|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 888899999999999999999999999999988 8999999999999999999988888989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 249 QLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 249 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
........+..++.++..++++++|++++.+|.++.|.+++++.+......|+..++..+..+.+++.+.+|+.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~ 318 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77666666666666677778889999999999999999999888888888899999999999999999999999999876
Q ss_pred CCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
++.+..........+..+.|+++||+|+|+++.++++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 54221111111111234579999999999854335799999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
+||.++++++.+++|++|+||||+|++|++||+|||.+|+|+.++++++++++.+++++++.++|+|++|.+|++|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHhccCCcHHHHHHHHH
Q 000689 649 DELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 649 ~~l~~~~~~~~y~~l~~~~ 667 (1350)
++++++ ++.|+++++.|
T Consensus 559 ~~l~~~--~~~~~~l~~~~ 575 (576)
T TIGR02204 559 AELIAK--GGLYARLARLQ 575 (576)
T ss_pred HHHHHc--CChHHHHHhhc
Confidence 999987 78999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=702.76 Aligned_cols=544 Identities=27% Similarity=0.411 Sum_probs=442.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 000689 770 GSLNAFFAYVLSAIMSVYYNPDH-AYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEI 848 (1350)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 848 (1350)
.......+.++...++.....+. ..........+..|..+.+...+|+.++.+.|.++.+++.+..-.+.|.+++..+.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455555666555554421111 11122233445677888888999999999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 849 AWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTA-GFVLQWRLALVLIAVFPVVVAATVLQKMFMK 927 (1350)
Q Consensus 849 ~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~-~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~ 927 (1350)
+||-. ..+|.+.+.+.+-...+...+...+..++..++.+...... ..-+++..+++.+..+.....+.+....+..
T Consensus 123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99975 56899998888888888877777666666665544444322 2334555555555555455444455555556
Q ss_pred hHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000689 928 GFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYS 1007 (1350)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1350)
.++++...+...+...+.+++.|.++||+||-|++..++|...+....+.........++..-....+.....+.+.+.+
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888889999999999999999999999999999999999888777666655555444333344445556666666
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEE
Q 000689 1008 SWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKH 1087 (1350)
Q Consensus 1008 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~n 1087 (1350)
..-+..|..+++.++.+...+.....++..+.....++.++..-+..++...+....+.. ...+....+|.|+|+|
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~----~~~~i~~~~~~I~F~d 356 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE----AALPIELFGGSIEFDD 356 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh----ccCCcccCCCcEEEEe
Confidence 666777888999888777777777777777777777777777766666654432222111 1112223567899999
Q ss_pred EEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccC
Q 000689 1088 VDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQE 1167 (1350)
Q Consensus 1088 Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQd 1167 (1350)
|+|.|+ |+++||+++||+|++||+|||||+|||||||++++|+||+| ++|+|+|||+||++++++++|+.|||||||
T Consensus 357 V~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 357 VHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred eEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 999997 44569999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000689 1168 PCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247 (1350)
Q Consensus 1168 p~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDE 1247 (1350)
.+||++||.+||.||++++++||+.++||++++||.|+++|+||+|.|||+|..||||||||++||||+|++|||+++||
T Consensus 434 ~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE 513 (591)
T KOG0057|consen 434 SVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE 513 (591)
T ss_pred ccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhh
Q 000689 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324 (1350)
Q Consensus 1248 aTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~ 1324 (1350)
|||+||.+||+.|.+++.....|||+|+|+||++++++||+|+||++|+|+|+|+|+||++. .+.|+++|..|..
T Consensus 514 aTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~--s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 514 ATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP--SELYADLWTTQTS 588 (591)
T ss_pred cccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh--hhHHHHHhccccc
Confidence 99999999999999999998899999999999999999999999999999999999999985 8999999987643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=835.11 Aligned_cols=647 Identities=16% Similarity=0.199 Sum_probs=466.6
Q ss_pred ccchhhhhccccccc-cccCCeeecCCCCCCCCCCCCCCCCC----C---chhhhhc-cchhhhh--hc----ccCCCCC
Q 000689 6 SHQQEIKKIEQWRWS-EMQGLELVSSPPFNNHNNSNNNYANP----S---PQAQAQE-TTTTTKR--QM----ENNSSSS 70 (1350)
Q Consensus 6 ~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~-~~~~~~~--~~----~~~~~~~ 70 (1350)
+|++++++.+ |.| +|++|++++.|+++++.+....+.+. . .+..+.+ .+...+. .. ++.....
T Consensus 797 TH~~~~l~~a--D~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1495)
T PLN03232 797 TNQLHFLPLM--DRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGS 874 (1495)
T ss_pred ECChhhHHhC--CEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 6999999998 998 99999999999987765433222110 0 0000000 0000000 00 0000000
Q ss_pred C--CCCC---CCCCCCCCCccchHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHH
Q 000689 71 S--SAAN---SEPKKPSDVTPVGLGELFRFADSLDY-VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQ 144 (1350)
Q Consensus 71 ~--~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~ 144 (1350)
. .... ...+++.....+.+..+++|++...+ ..+++.+++.++..++.....++++.+.+..... ...
T Consensus 875 ~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~----- 948 (1495)
T PLN03232 875 TKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK-SYS----- 948 (1495)
T ss_pred ccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-CCC-----
Confidence 0 0000 00111122345677788888765322 2222222222222233333334555444321100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHH
Q 000689 145 EVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISE 224 (1350)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~ 224 (1350)
...+..++++++++..++.+++.+++.+.+.+...++|.+++++++++|++|||++ ++|++++|+++|++.+++.+..
T Consensus 949 -~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~ 1026 (1495)
T PLN03232 949 -PGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVAN 1026 (1495)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHH
Confidence 11234445566666777888888888999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHh
Q 000689 225 KLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVI-GAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAF 303 (1350)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f 303 (1350)
.+..++..++.++++++++++++|.. +++++++++++++ ..++.+..++..+......+...+.+.|+++|+++||+|
T Consensus 1027 ~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf 1105 (1495)
T PLN03232 1027 LMNMFMNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAY 1105 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcC
Confidence 99999998888888888887777533 3333333332222 223334445566666777788999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccC----HHHHHH-HHHHHHHH
Q 000689 304 VGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRH-HFTN----GGLAIA-TMFAVMIG 377 (1350)
Q Consensus 304 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~-g~~~----~g~~~~-~~~~~~~~ 377 (1350)
++++++.+++.+..+...+..+.......+..... ..+..+++++.|...+.. +.+. .+..++ ++.+....
T Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1106 KAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 99998777776666655544433222222111111 112222222333334432 3221 122222 23344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCC--CCcceEEEEEEEEECCCCCCCccccceEEEEeC
Q 000689 378 GLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELD--SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPA 455 (1350)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~ 455 (1350)
..++..+...+..++.+..|.+|+.++++.++|.+...+...+++ +..|.|+|+||+|+|+.+ .+++|+|+||+|++
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcC
Confidence 557778888889999999999999999987765422111111111 345789999999999632 24799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHH
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNE 535 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~ 535 (1350)
||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++.+++|++|+||||||.||+|||||||.+++ ++++++
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdee 1340 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDAD 1340 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 589999
Q ss_pred HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 000689 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIG 615 (1350)
Q Consensus 536 ~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~ 615 (1350)
+++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..++
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHHH
Q 000689 616 RTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEA 669 (1350)
Q Consensus 616 ~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~ 669 (1350)
+|+|+||||++++.+||+|+||++|+|+|.|+|+||++++ ++.|++|++.+..
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~-~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD-TSAFFRMVHSTGP 1473 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-CCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999872 4689999976543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-80 Score=791.17 Aligned_cols=649 Identities=20% Similarity=0.254 Sum_probs=507.0
Q ss_pred ccchhhhhccccccc-cccCCeeecCCCCCCCCCCCCCCCCC---Cchhhhhccch-hhhh----------hcccCCCCC
Q 000689 6 SHQQEIKKIEQWRWS-EMQGLELVSSPPFNNHNNSNNNYANP---SPQAQAQETTT-TTKR----------QMENNSSSS 70 (1350)
Q Consensus 6 ~h~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~----------~~~~~~~~~ 70 (1350)
.||++|++++ |.| +|++|+|++.|+|.|+.+.+..+.+. +..+.+.+.+. ..+. ..+......
T Consensus 700 THql~~L~~a--d~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1381)
T KOG0054|consen 700 THQLQFLPHA--DQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEE 777 (1381)
T ss_pred eCchhhhhhC--CEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccc
Confidence 5999999999 999 99999999999999998765443321 11010100000 0000 000000000
Q ss_pred CCCCCCC-------CCCCCCCccchHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHH
Q 000689 71 SSAANSE-------PKKPSDVTPVGLGELFRFADS-LDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKM 142 (1350)
Q Consensus 71 ~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~ 142 (1350)
+.....+ .+++.+...+.+..+..|++. ..+...++.+++.++...+.....+|+..+.+.-.......
T Consensus 778 ~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~--- 854 (1381)
T KOG0054|consen 778 EKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT--- 854 (1381)
T ss_pred cccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC---
Confidence 0000000 011224567888889999876 33333333334444444455555567777766421111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHH
Q 000689 143 MQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAI 222 (1350)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~ 222 (1350)
.....+..++.+++++..++.+++.+.+...+.+.+++|+.++++++++.|++|||++ ++|+|+||+++|++.+++.+
T Consensus 855 -~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~L 932 (1381)
T KOG0054|consen 855 -VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLL 932 (1381)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhh
Confidence 0112345556667777788888899999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 000689 223 SEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFA 302 (1350)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~ 302 (1350)
+..+..++..++.+++.++++.+..|++.++++.+..+++++..++.+..+++.+......+...+++.|++.|+.|||+
T Consensus 933 p~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRA 1012 (1381)
T KOG0054|consen 933 PFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRA 1012 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeee
Confidence 99999999999999999999999999988888888888888888888888888888888899999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Q 000689 303 FVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALA 382 (1350)
Q Consensus 303 f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~ 382 (1350)
|+.|+++.+++....+.+.+..+.......+..--..++..+.......+.. +...+..++|.+--.+.+.+.....+.
T Consensus 1013 f~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~ 1091 (1381)
T KOG0054|consen 1013 FGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQ 1091 (1381)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999888876655444333333333333222222111111 111222556665555566666666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCC--CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEE
Q 000689 383 QAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELD--SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIA 460 (1350)
Q Consensus 383 ~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 460 (1350)
.+......+...+.|.|||.++.+.++|.+...+...+++ +.+|.|+|+|++.+|... ..+||+||||+|+|||+||
T Consensus 1092 ~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVG 1170 (1381)
T KOG0054|consen 1092 WLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVG 1170 (1381)
T ss_pred HHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEE
Confidence 8888899999999999999999997766211111111222 467999999999999643 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHH
Q 000689 461 LVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAA 540 (1350)
Q Consensus 461 ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~ 540 (1350)
|||++|||||||+++|.|+.+|.+|+|.|||.||.++++++||++++++||||.||+||+|.|+.-.. +.+|+++|+|+
T Consensus 1171 IVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~AL 1249 (1381)
T KOG0054|consen 1171 IVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEAL 1249 (1381)
T ss_pred EeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995432 57899999999
Q ss_pred HHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 000689 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620 (1350)
Q Consensus 541 ~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 620 (1350)
+.|++.+++.++|+|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.
T Consensus 1250 e~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1250 ERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred HHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHH
Q 000689 621 IAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 621 itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~ 665 (1350)
||||++|+.++|||+|||+|+|+|.|+|.+|++++ ++.|++++.
T Consensus 1330 IAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~-~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1330 IAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK-DSLFSSLLK 1373 (1381)
T ss_pred EeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC-cchHHHHHH
Confidence 99999999999999999999999999999999874 677765544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=823.51 Aligned_cols=507 Identities=20% Similarity=0.250 Sum_probs=425.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 158 AAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFV 237 (1350)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~ 237 (1350)
++..++.++..++....+.+...++|.++|++++++|+.|||++ ++|+++||+++|++.+++.+...+..++..++.++
T Consensus 1009 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i 1087 (1560)
T PTZ00243 1009 LLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566777788999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 000689 238 TGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSAL 317 (1350)
Q Consensus 238 ~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~ 317 (1350)
+.++++++.+|.+.++++.++.++..+..++.+..++..+......+.+.+.+.|+++|+++||+|++|+.+.++|.+.+
T Consensus 1088 ~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~ 1167 (1560)
T PTZ00243 1088 SSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRL 1167 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHH
Confidence 99999998888554443333333344455566666777777777888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 318 KVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLV--RHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAK 395 (1350)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 395 (1350)
+...+..++......+......++..+..+++.++|...+ ..+.++.|.+..++.+......++..+...+..+++++
T Consensus 1168 d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~ 1247 (1560)
T PTZ00243 1168 DVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADM 1247 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877766555555555455444444444444444333 34456788776666666777778889999999999999
Q ss_pred HHHHHHHHHHccCCCCCCCC------------------------CCCc-----cCCCCcceEEEEEEEEECCCCCCCccc
Q 000689 396 VAAAKIFRIIDHKPSIDRNS------------------------ESGL-----ELDSVSGLIELKHVDFSYPSRPEVRIL 446 (1350)
Q Consensus 396 ~s~~ri~~~l~~~~~~~~~~------------------------~~~~-----~~~~~~g~i~~~~v~f~y~~~~~~~~l 446 (1350)
.+++||+++++..++.+... +... +..+..|.|+|+||+|+|++. ..++|
T Consensus 1248 ~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL 1326 (1560)
T PTZ00243 1248 NSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVL 1326 (1560)
T ss_pred HHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCcee
Confidence 99999999997543211000 0000 011235789999999999743 34699
Q ss_pred cceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhc
Q 000689 447 NNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILL 526 (1350)
Q Consensus 447 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~ 526 (1350)
+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||.||+|||||||..
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC-CCEeEEeccCCCCCHHHHHHH
Q 000689 527 GRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN-PAILLLDEATSALDSESEKLV 605 (1350)
Q Consensus 527 g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~-~~ililDE~ts~lD~~~~~~i 605 (1350)
+. +++++++++|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|
T Consensus 1407 ~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~I 1485 (1560)
T PTZ00243 1407 FL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI 1485 (1560)
T ss_pred cc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHH
Confidence 64 6889999999999999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHH
Q 000689 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQE 668 (1350)
Q Consensus 606 ~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~ 668 (1350)
++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++. ++.|+++++.+.
T Consensus 1486 q~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~-~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR-QSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-CCHHHHHHHHhC
Confidence 99999988899999999999999999999999999999999999999752 689999987654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-78 Score=762.83 Aligned_cols=563 Identities=31% Similarity=0.496 Sum_probs=503.6
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 748 LAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIV 827 (1350)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 827 (1350)
++++.++.++.++++++++++.+++.+..++++..+++....... ......+..+++++.++..++.+++.++....
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777777788888888888888777765543221 11223334456677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 828 GENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALV 907 (1350)
Q Consensus 828 ~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv 907 (1350)
+.++...+|..+|+++++.|.++|++ .+.|++++|+++|++.++..+...+..++.+++.+++.++++++++|+++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000689 908 LIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGS 987 (1350)
Q Consensus 908 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1350)
++++.|+.++..++..+..+...++..+...+..+.+.|.++|+++||+++.++.+.++|.+..+...+...+.....+.
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888887778878888888899999999999999999999999999999999999988888888888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 000689 988 GYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEP 1067 (1350)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~ 1067 (1350)
...+.+++..+..++.+++|++++..|.++++.++++..+......++..+......+..++.+.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 77788888888899999999999999999999999999999999999999999999999999999999999986554321
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCc
Q 000689 1068 DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147 (1350)
Q Consensus 1068 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~ 1147 (1350)
.. ... ....+.|+|+||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+
T Consensus 320 ~~---~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 320 GT---RAI-ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CC---CCC-CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 11 111 1235689999999999764 347999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCC-CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1148 DIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE-SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1148 di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~-~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
|+++++.+++|++|+||||||++|+|||||||.++++ +.++++++++++.+++++++.++|+||||.+|++|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999986 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHH
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|||||||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhcCCCchhHHHHHHh
Q 000689 1307 LKNNPDGCYARMIQLQ 1322 (1350)
Q Consensus 1307 l~~~~~g~y~~l~~~q 1322 (1350)
+++ ++.|+++++.+
T Consensus 555 ~~~--~~~~~~~~~~~ 568 (571)
T TIGR02203 555 LAR--NGLYAQLHNMQ 568 (571)
T ss_pred HHc--CCHHHHHHHHh
Confidence 987 78999998865
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-77 Score=756.01 Aligned_cols=567 Identities=29% Similarity=0.403 Sum_probs=482.3
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 744 SFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSF 823 (1350)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 823 (1350)
.+|++.++.++.+..+.+.++++++..++....++++..+++...... ....+.++++++.++..+..++..++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666777777777777777777778877777654321 11112223333334444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 824 WDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWR 903 (1350)
Q Consensus 824 ~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 903 (1350)
..+...++..+++.++|+++++.|..+|++ .+.|++++|+++|++.+...+...+..++..++.+++.++++++++|+
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666667779999999999999985 789999999999999999888888888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 904 LALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQ 983 (1350)
Q Consensus 904 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 983 (1350)
+++++++++|+.++...+..+..+...++..+......+.+.|+++|+++||+|+.++.+.++|.+..+...+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777766666666666677777788889999999999999999999999999999999888887777777
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000689 984 IAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKT 1063 (1350)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~ 1063 (1350)
.......+.+++..+...+++++|++++.+|.++++.++++..++.....++..+......+..+..+.+++.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77767777777788888899999999999999999999988888888888888999989999999999999999887654
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEE
Q 000689 1064 EIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143 (1350)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1143 (1350)
+.+.. ... ...+...+.|+|+||+|+||++ .++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 318 ~~~~~-~~~-~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 318 DVRDP-PGA-IDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred ccCCC-CCC-CCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 42211 111 1111234679999999999743 3699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1144 IDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1144 iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
+||+|+++++.+++|++|+||||||.+|+|||||||.+++++++|++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
||||||||||||++++|+|||||||||+||++||+.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhcCCCchhHHHHHHhhh
Q 000689 1304 SHLLKNNPDGCYARMIQLQRF 1324 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~~~q~~ 1324 (1350)
++|+++ ++.|++|+..+..
T Consensus 554 ~~l~~~--~~~y~~l~~~~~~ 572 (588)
T PRK13657 554 DELVAR--GGRFAALLRAQGM 572 (588)
T ss_pred HHHHHC--CChHHHHHHHhhc
Confidence 999987 7999999986643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-78 Score=752.61 Aligned_cols=523 Identities=22% Similarity=0.272 Sum_probs=443.4
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 750 KMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGE 829 (1350)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 829 (1350)
++.++.++.+++.++++++..++....+++++.+++.....+. ......++..++++.++..++.++..++...++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666667777777765432211 0000111112223455567778888889999999
Q ss_pred HHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 830 NLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLI 909 (1350)
Q Consensus 830 ~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l 909 (1350)
++..++|.++|+++++.|..||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++++
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 160 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLA 160 (529)
T ss_pred HHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999985 789999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000689 910 AVFPVVVAAT-VLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSG 988 (1350)
Q Consensus 910 ~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1350)
+.+|++.++. ++..+..+...++.++..++..+++.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (529)
T TIGR02868 161 AGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLG 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765554 444444455556667777888999999999999999999999999999999998888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000689 989 YGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPD 1068 (1350)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~ 1068 (1350)
..+..++..+..++.+|+|++++..|.++.+.++++..+......++..+......+.++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (529)
T TIGR02868 241 AAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG 320 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence 77788888888888999999999999999998888877777777888888888889999999999999999876543221
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCcc
Q 000689 1069 DPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148 (1350)
Q Consensus 1069 ~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~d 1148 (1350)
+.......++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 321 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 321 VVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 111000111234679999999999754 369999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1149 IRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1149 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
++++ .+++|++|+||||||+||+|||||||.+|+++++|+++++|++.|++++||.+||+||||.+||+|.+|||||||
T Consensus 399 i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 399 VSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRl 1280 (1350)
|||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-78 Score=687.67 Aligned_cols=504 Identities=23% Similarity=0.354 Sum_probs=425.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000689 808 GLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNT 887 (1350)
Q Consensus 808 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~ 887 (1350)
++++...+..++.....+.+..++...+|.++|+++...+..-..+ ..+|+++||+..|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 5566677788888888899999999999999999999888776664 67999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHH
Q 000689 888 ALMLVACTAGFVLQWRLALVLIAVF-PVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGL 966 (1350)
Q Consensus 888 ~~~i~~~~~~~~~~~~l~lv~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 966 (1350)
...++..+..-+++|.+++.+...+ .+.++..++..++.++..++.+...+...+++.|.+.|....+.||+++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 8888777777788898887655443 445556677777888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000689 967 FSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYA-LGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETL-TLAPD 1044 (1350)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1044 (1350)
+....+...+...+...+.+....+.+++..+..+ .++|.+. .+..|..+......+.++......+..-+. ....+
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99888887777777777666665555555555554 4444443 344455443222222222222222222222 33456
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCH
Q 000689 1045 FIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGK 1124 (1350)
Q Consensus 1045 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGK 1124 (1350)
..+...+++|+.++.+.+++....+ .. .+.... .++++||+|+||++ ..+||+|+||++++||+|||+|||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~-~~--~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPD-EQ--TATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCc-cc--cCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCH
Confidence 6677888999999998887765331 11 111112 79999999999875 4579999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHH
Q 000689 1125 SSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFI 1204 (1350)
Q Consensus 1125 STL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I 1204 (1350)
||++++|.|-|+|++|+|.++|++++.++.+++|+.|++++|.++||++|+|+||..++|++||||+|++++++++++++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 000689 1205 SSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIR 1284 (1350)
Q Consensus 1205 ~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~ 1284 (1350)
++.|+||+|.+||+|.+||||||||++|||+||+|.|++||||||.+||++||+.|.+.|.+..+|||+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1285 NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1285 ~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
.||||+|||+|+++|+|+|.+|+++ +|.|++|++.
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~--~g~~~~l~q~ 572 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN--NGRYKRLYQL 572 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc--ccHHHHHhcc
Confidence 9999999999999999999999997 8999999863
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-77 Score=747.19 Aligned_cols=567 Identities=26% Similarity=0.385 Sum_probs=483.9
Q ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFW 824 (1350)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 824 (1350)
+++++++.++.+..++++++++++..++..+.++.++.+++.....+. ...+..+++++.++..+..++..++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777888888888888888888888876543221 01112222223334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 825 DIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRL 904 (1350)
Q Consensus 825 ~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l 904 (1350)
..+..++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|++
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677789999999999999986 6799999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 905 ALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984 (1350)
Q Consensus 905 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1350)
++++++++|+.++.........+...++..+...+..+++.|+++|+++||+|+.++.+.++|.+..+...+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777776666666666667777788889999999999999999999999999999888877766666666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000689 985 AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTE 1064 (1350)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~ 1064 (1350)
.+....+..++..+..++++++|++++.+|.++++.++++..+......++..+......+..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 66666666677777888889999999999999999998888888888888888888899999999999999999876544
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEE
Q 000689 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144 (1350)
Q Consensus 1065 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1144 (1350)
.+.... . ...+...+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++
T Consensus 319 ~~~~~~-~-~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 319 REEPAD-A-PELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred ccCCcc-C-CCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 321111 0 1111234679999999999743 36899999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1145 DGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1145 DG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
||+|+++++.+++|++++||||||.+|++||+|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChh
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHS 1304 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~ 1304 (1350)
|||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhcCCCchhHHHHHHhhhc
Q 000689 1305 HLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1305 eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
+|+++ +|.|+++++.|...
T Consensus 555 ~l~~~--~~~y~~l~~~~~~~ 573 (585)
T TIGR01192 555 ELIQK--DGRFYKLLRRSGLL 573 (585)
T ss_pred HHHHC--CChHHHHHHhCccc
Confidence 99987 79999999987554
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-77 Score=746.87 Aligned_cols=542 Identities=26% Similarity=0.391 Sum_probs=469.9
Q ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 000689 773 NAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFD 852 (1350)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd 852 (1350)
..+.+++++.+++........ ......|..+++++.++..++.+++.++....+.+...++|.++|+++++.|++||+
T Consensus 11 ~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 334455666666654322111 112233444555555666777888888888999999999999999999999999998
Q ss_pred cccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 000689 853 QEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAG-FVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSG 931 (1350)
Q Consensus 853 ~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~ 931 (1350)
+ +++|++++|+++|++.++..+...+..++..++..+++++++ ++++|++++++++++|+.++......+..++..+
T Consensus 89 ~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 166 (569)
T PRK10789 89 R--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFK 166 (569)
T ss_pred C--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 789999999999999999888888888877766666665555 5799999999999989888777777666666677
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 932 DMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLV 1011 (1350)
Q Consensus 932 ~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1011 (1350)
+.++..++..+.+.|++.|+++||+|+.++.+.++|.+..++..+...+.....+....+.+....+...+.+++|.+++
T Consensus 167 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv 246 (569)
T PRK10789 167 LAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999988887777777777766666667777777888899999999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEE
Q 000689 1012 KHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFS 1091 (1350)
Q Consensus 1012 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~ 1091 (1350)
..|.+++|.++++..+......++..+......+.++..+.+|+.++++.+++.+... .+. +...+.|+|+||+|+
T Consensus 247 ~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~-~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPV-PEGRGELDVNIRQFT 322 (569)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCC-CCCCCcEEEEEEEEE
Confidence 9999999999888888888888998888999999999999999999998765432211 111 123568999999999
Q ss_pred CCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccC
Q 000689 1092 YPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLF 1171 (1350)
Q Consensus 1092 Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF 1171 (1350)
|+.. +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++++||||+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 347999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCC
Q 000689 1172 ASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251 (1350)
Q Consensus 1172 ~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSa 1251 (1350)
++||||||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHHhhhc
Q 000689 1252 LDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT 1325 (1350)
Q Consensus 1252 LD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~q~~~ 1325 (1350)
||+++++.+++.|++..+|+|+|+||||++++..||+|++|++|+++|+|+|++|+++ +|.|++|++.|+..
T Consensus 482 LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~--~~~y~~l~~~~~~~ 553 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ--SGWYRDMYRYQQLE 553 (569)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc--CChHHHHHHHhhhc
Confidence 9999999999999998889999999999999999999999999999999999999987 79999999987654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-77 Score=743.57 Aligned_cols=525 Identities=26% Similarity=0.317 Sum_probs=460.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 104 MAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMR 183 (1350)
Q Consensus 104 ~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR 183 (1350)
+.++++++++.+++.+..|++++.++|.+.....+ ...+..+...+++++++..++.+++.++..+.+.++..++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777888888899999976311111 11222334444455566778888999999999999999999
Q ss_pred HHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000689 184 IKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAV 263 (1350)
Q Consensus 184 ~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~ 263 (1350)
.++|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+.++
T Consensus 81 ~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999988 9999999999999999999998888999998888888999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 264 IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVF 343 (1350)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1350)
+..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999888888777777666666666666
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCC
Q 000689 344 CSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDS 423 (1350)
Q Consensus 344 ~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 423 (1350)
+..+++++++++.+.+|.++.|.+++++.+......|+..+...+..+++++.+++|+.++++.+++..+ .. .....
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~~-~~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--KA-PVTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--Cc-CCCCC
Confidence 6666666677777779999999999888877778889999999999999999999999999985433211 11 11111
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHh
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r 503 (1350)
..+.|+++||+|+||+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999853 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 504 QQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
++++||+|+|++|++||+|||.++.+++++++++++++.+++++++.++|+||||.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVL 637 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl 637 (1350)
+|+|||||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=749.20 Aligned_cols=566 Identities=32% Similarity=0.535 Sum_probs=488.9
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 749 AKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVG 828 (1350)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 828 (1350)
+++.++.+..+.+.+++.++.+++....++.+..+++....... ......++.+++++.++..++.+++.++...++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 10 WPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555566666777777777777888877776332211 112223334445555556677788889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 829 ENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVL 908 (1350)
Q Consensus 829 ~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~ 908 (1350)
.++...+|..+++++++.|..+|+. ...|++++|+++|++.+++.+...+..++..++.+++.+++++.++|++++++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999986 67899999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000689 909 IAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSG 988 (1350)
Q Consensus 909 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1350)
++.+|+.++..++.....+...++..+...+..+++.|.++|+++||+++.++.+.++|.+..+...+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777777777777777778888888999999999999999999999999999999888777766666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Q 000689 989 YGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPD 1068 (1350)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~ 1068 (1350)
..+..++.++..++.+++|++++..|.++++.++++..+......++..+.....++.++..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 56666666677788888999999999999999988888888888899999999999999999999999998866543211
Q ss_pred CCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCcc
Q 000689 1069 DPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148 (1350)
Q Consensus 1069 ~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~d 1148 (1350)
.. ....+.+..+.|+|+||+|+||++.+.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus 325 ~~-~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 325 AH-PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CC-CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11 11111123467999999999986443579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1149 IRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1149 i~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
+++++.+++|++|+||||||.+|+|||||||.+++++.+|++++++++.+++++++.++|+|+||++|++|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCCchhHHHHHHh
Q 000689 1309 NNPDGCYARMIQLQ 1322 (1350)
Q Consensus 1309 ~~~~g~y~~l~~~q 1322 (1350)
+ ++.|++|++.|
T Consensus 564 ~--~~~~~~l~~~~ 575 (576)
T TIGR02204 564 K--GGLYARLARLQ 575 (576)
T ss_pred c--CChHHHHHhhc
Confidence 7 79999999865
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-79 Score=673.09 Aligned_cols=491 Identities=33% Similarity=0.434 Sum_probs=443.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 000689 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAV-GFSAV 247 (1350)
Q Consensus 169 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 247 (1350)
.++...++.....+--+.|.|+.++++.|+-++ .+|.+...+.....-|+..+...+...+..++-+....++ ...++
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 345667788888888899999999999999888 9999888888888888887777777777776655444444 44689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 000689 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 248 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
|+.++++++++.+++++......+.....+...++.++++....+++-|..+||.|+.|+.+..+|...++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999999998888877777777778888899999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDH 407 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 407 (1350)
....++.......+...........++..+..|.+|.|+++..-.++.....|+..+...+..+.+++...++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 77766666666666666677777888889999999999999888888888899999999999999999999999999998
Q ss_pred CCCCCCCCCCCccCC-CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 000689 408 KPSIDRNSESGLELD-SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486 (1350)
Q Consensus 408 ~~~~~~~~~~~~~~~-~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 486 (1350)
+.++.+.+ +..+.. ...|.+.|+||+|.|. +.+++|+|+||++++|+++|+|||||+||||++++|.|||++++|.
T Consensus 243 ~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 243 EAEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred chhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 87764322 222222 3467899999999997 4568999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCC
Q 000689 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQ 566 (1350)
Q Consensus 487 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~ 566 (1350)
|.+||+|+++...+++|+.||+||||..||++|+..||.||+|+++++|++.+++.+++++||..+|+||+|.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 567 LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 567 LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
||||||||+||||+++++|+||+|||+|||||.+||+.||.+|++..+|+|+++|+|||+|+.+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHhccCCcHHHHHHH
Q 000689 647 THDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 647 ~~~~l~~~~~~~~y~~l~~ 665 (1350)
+|+||+++ +|.|++||.
T Consensus 480 ~h~~ll~~--~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA--GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc--CChHHHHhc
Confidence 99999998 899999985
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-79 Score=673.04 Aligned_cols=493 Identities=32% Similarity=0.434 Sum_probs=418.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000689 821 HSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC-TAGFV 899 (1350)
Q Consensus 821 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~-~~~~~ 899 (1350)
..+|..+++.+.+.+--+.|.|+.+.++.|.-+ ..+|.+...+.....-++..+...+...+..++-+...+ +....
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 345677888888899999999999999999864 345555444444444444444444444444444333333 34456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000689 900 LQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCF 979 (1350)
Q Consensus 900 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 979 (1350)
++||.+++.++++.+++++.+...-+.-.+.++...+.+.++....+++-+.+|+|.|+-|+.+..+|...++...+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999998888888877777777888899999999999999999999999999999999999999888777665
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000689 980 WKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLL 1059 (1350)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~ 1059 (1350)
+.....++..-....+.......+...+...+..|..|.|+++..-..+.....++..+.....++.++...+++.++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 54444443333334444455566666777778899999999887777777777777777777788899999999999998
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCc
Q 000689 1060 DRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139 (1350)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1139 (1350)
+.+.+.... ++..+..+...|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||+.++|+||||+++
T Consensus 241 ~~~~~v~d~-pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDA-PDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccC-CCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 877665422 111111113468899999999996 44689999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCC
Q 000689 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERG 1219 (1350)
Q Consensus 1140 G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G 1219 (1350)
|.|.|||.||+++..+++|+.||+||||.+||+.|+..|+.||+|+++++|++.|++.|++++||.++|+||||.|||+|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEE
Q 000689 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299 (1350)
Q Consensus 1220 ~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE 1299 (1350)
-.||||||||+||||++|++|+||+||||||+||..||+.||.+|++..+|+|.++|||||+||.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCCCchhHHHHH
Q 000689 1300 LGSHSHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1300 ~Gt~~eLl~~~~~g~y~~l~~ 1320 (1350)
.|+|+||+++ +|.|++||.
T Consensus 478 rg~h~~ll~~--~g~ya~mw~ 496 (497)
T COG5265 478 RGTHEELLAA--GGLYAEMWR 496 (497)
T ss_pred cCcHHHHHHc--CChHHHHhc
Confidence 9999999998 999999996
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-76 Score=670.53 Aligned_cols=503 Identities=25% Similarity=0.341 Sum_probs=434.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 155 VVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLA 234 (1350)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 234 (1350)
.+++...+..|...+..+....++..++|.++|+++...+..-.... ++||+++|+..|++.+++.+-..+...+..+.
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~ 144 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALV 144 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHH
Confidence 34666777888888889999999999999999999999999998887 99999999999999999999888877777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHH
Q 000689 235 TFVTGFAVGFSAVWQLALVTLAV-VPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAY 313 (1350)
Q Consensus 235 ~~~~~~~~~~~~~~~l~lv~l~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~ 313 (1350)
.+.+..+..-+++|.+++.+... +.+++++..++.+..++..++..+..+...+.+.|.+.|....+.||.++.+.+.+
T Consensus 145 ~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l 224 (573)
T COG4987 145 LIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL 224 (573)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence 76666666667889887654443 34455566777788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000689 314 SSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYA-LLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAA-PSISAF 391 (1350)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~ 391 (1350)
...-....+...+...+.++...+..++..+..+ +++|.++ .+..|..+......+++.++....++..+. ..+...
T Consensus 225 ~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999999999999998888888777777666655 4555554 344566654333333333333333333344 556788
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHH
Q 000689 392 AKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKST 471 (1350)
Q Consensus 392 ~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKST 471 (1350)
.+...|++|+.++++.+++...+ .+ ......+ .++++||+|+||+. +.++|+|+||++++||++||+|+|||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~-~~-~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFP-DE-QTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCC-cc-ccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 89999999999999998876432 11 1111112 79999999999864 457999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhc
Q 000689 472 VVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK 551 (1350)
Q Consensus 472 l~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~ 551 (1350)
|+++|.|-|+|++|+|.++|.++..++.+.+|+.|++++|.++||++|+|||+.+++|++++|+++++++.+++++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhc
Q 000689 552 LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKA 631 (1350)
Q Consensus 552 lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~ 631 (1350)
.|+||+|.+||.|..||||||||++|||+|++|+|++||||||.+||++||+.+.+.|.+..+|||+|+||||+..++.+
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChHHHHhccCCcHHHHHHH
Q 000689 632 DVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 632 d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~ 665 (1350)
|+|+||++|+++|+|+|.+|+.+ +|.|+++++
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~--~g~~~~l~q 571 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN--NGRYKRLYQ 571 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc--ccHHHHHhc
Confidence 99999999999999999999997 899998875
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=729.90 Aligned_cols=533 Identities=25% Similarity=0.312 Sum_probs=459.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 105 AIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKMRI 184 (1350)
Q Consensus 105 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 184 (1350)
++.++++++..++....|++++.++|..... .+. ..+..+...++++.++..++.+++.++..+.+.++..++|.
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~-~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTS-GSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-Cch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666677788899865421 111 12222333344444556677888888999999999999999
Q ss_pred HHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000689 185 KYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISE-KLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAV 263 (1350)
Q Consensus 185 ~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~ 263 (1350)
++|+|++++|.. ..+...+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++.+|++++
T Consensus 84 ~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 84 PIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999983 2356788999999999998877 4555555555444 4567889999999999988888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 264 IGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVF 343 (1350)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1350)
+..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.....+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888899999999999999999999999999999999999999999988888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCC
Q 000689 344 CSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDS 423 (1350)
Q Consensus 344 ~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 423 (1350)
+..++++++|++++.+|.+|.|.+++++.+......|+..+...+..+++++.+.+|+.++++.+++.++ . ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~-~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A-MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-CCCCC
Confidence 7778888999999999999999999998888888889999999999999999999999999987654321 1 11122
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHh
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR 503 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r 503 (1350)
..+.|+++||+|+|++. ++++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+++.+++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34679999999999743 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 504 QQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
++++||||+|++|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|+|||||||||+||+++++.+.+.|.++. +++|+|+||||++++..||+|++|++|++++.|+|+|++++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999885 68999999999999989999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-77 Score=702.14 Aligned_cols=483 Identities=31% Similarity=0.487 Sum_probs=374.5
Q ss_pred eEEEEEEEEECCCCCC-CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEECCeeCCCCCHHH
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT----SGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~i~g~~~~~~~~~~ 501 (1350)
.++++|++..|..... ..+++||||++.+||++||||.|||||||+.+.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975422 35999999999999999999999999999999999999988 899999999998888765
Q ss_pred Hh----ccEEEEccCCC-cccc--cHHHHhhc----CCCCCCHHHHHHHHHHhchHHHHh--cCCCCccchhcCCCCCCC
Q 000689 502 LR----QQIGLVSQEPA-LFAT--TIKENILL----GRPDADLNEIEEAARVANAYSFII--KLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 502 ~r----~~i~~v~Q~~~-lf~~--ti~eNi~~----g~~~~~~~~~~~~~~~~~~~~~i~--~lp~g~~t~~~~~g~~LS 568 (1350)
+| +.|+||||+|. .+|. ||.+-|.- ... .+.++ +.+ .+.+.+. .+|+.... ...+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~e---a~~--~a~elL~~Vgl~~~~~~--~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAE---ARK--RAVELLEQVGLPDPERR--DRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHH---HHH--HHHHHHHHcCCCChhhh--ccCCcccC
Confidence 43 57999999984 4443 66665542 111 11111 111 1122222 34443322 55889999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 645 (1350)
||||||+.||+||+.+|++||+||||++||+.+++.|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999986 58999999999999977 999999999999999
Q ss_pred cChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCccccccc
Q 000689 646 GTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLD 725 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1350)
|+.+++++++.+.+-+.++..- +
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a~-----------------p---------------------------------------- 259 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAAV-----------------P---------------------------------------- 259 (539)
T ss_pred cCHHHHHhccCCcccHHHHhhC-----------------C----------------------------------------
Confidence 9999998764222211111100 0
Q ss_pred CCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 000689 726 ATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYL 805 (1350)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1350)
T Consensus 260 -------------------------------------------------------------------------------- 259 (539)
T COG1123 260 -------------------------------------------------------------------------------- 259 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000689 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQ 885 (1350)
Q Consensus 806 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~ 885 (1350)
..+....
T Consensus 260 --------------------------------------------~~~~~~~----------------------------- 266 (539)
T COG1123 260 --------------------------------------------RLGDEKI----------------------------- 266 (539)
T ss_pred --------------------------------------------Ccccccc-----------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHH
Q 000689 886 NTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVG 965 (1350)
Q Consensus 886 ~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~ 965 (1350)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 966 LFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDF 1045 (1350)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1350)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCC--------CCCCcccceeEEEeCCCEEEEE
Q 000689 1046 IKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSR--------PDIPIFRDLSLRARAGKTLALV 1117 (1350)
Q Consensus 1046 ~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIV 1117 (1350)
...+.. .+ .....-++++|++.+|..+ ....+++||||+|++||++|||
T Consensus 267 -------------~~~~~~-~~---------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglV 323 (539)
T COG1123 267 -------------IRLPRR-GP---------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLV 323 (539)
T ss_pred -------------cccccc-cc---------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEE
Confidence 000000 00 0011147899999999742 1246899999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCCCccEEEECCcc--CCCCCHHHhhcccEEEccCCccC---cccHHHHhccCCC---CC---
Q 000689 1118 GPSGCGKSSVIALVQRFYEPSSGRVMIDGKD--IRKYNLKSLRRHMAIVPQEPCLF---ASTIYENIAYGHE---SA--- 1186 (1350)
Q Consensus 1118 G~SGSGKSTL~~lL~rl~~p~~G~I~iDG~d--i~~~~l~~lR~~i~~VpQdp~LF---~gTIreNL~~~~~---~~--- 1186 (1350)
|+||||||||.++|+|+.+|++|+|.++|.| .+.-+...+|+++-+|+|||+-. ..||+++|.-.-. ..
T Consensus 324 GeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~ 403 (539)
T COG1123 324 GESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGA 403 (539)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchH
Confidence 9999999999999999999999999999977 34334567888999999999632 3599999863211 11
Q ss_pred -CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 000689 1187 -TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265 (1350)
Q Consensus 1187 -td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~ 1265 (1350)
..+.+.+.++.+++..- .+......||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+
T Consensus 404 ~~~~rv~~ll~~VgL~~~----------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~ 473 (539)
T COG1123 404 ERRARVAELLELVGLPPE----------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473 (539)
T ss_pred HHHHHHHHHHHHcCCCHH----------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHH
Confidence 11234555666665531 2344557899999999999999999999999999999999999999999999
Q ss_pred HhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1266 RACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1266 ~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
++.+ |.|.|+|||+++.++. ||||+||.+|+|||.|+.+++++. |.-.|.+..-.
T Consensus 474 ~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~-p~h~Ytr~L~~ 531 (539)
T COG1123 474 DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN-PQHPYTRKLLA 531 (539)
T ss_pred HHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC-CCChHHHHHHH
Confidence 8764 7999999999999988 999999999999999999999987 78888887653
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-75 Score=724.52 Aligned_cols=526 Identities=26% Similarity=0.339 Sum_probs=451.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 758 YALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVRE 837 (1350)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 837 (1350)
.+.++++++++.+++.+..++..+++++........ ......+...++++.++..++.+++.++....+.++..++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777778888888888766322111 122334555566677778888999999999999999999999
Q ss_pred HHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 838 KMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVA 917 (1350)
Q Consensus 838 ~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~ 917 (1350)
++|+++++.|..||++ +++|++++|+++|++.+++.+...+..++..++..++.+++++.++|++++++++.+|+.++
T Consensus 82 ~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999985 78999999999999999999999999999999898999999999999999999998888877
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 000689 918 ATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLY 997 (1350)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1350)
+.+...++.+...++..+...+..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+..........+.+++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666777777888899999999999999999999999999998887777666666555555555555555
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCC
Q 000689 998 ASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPD 1077 (1350)
Q Consensus 998 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 1077 (1350)
+...+...++++.+..|.++++.++.+..+......++..+......+.++..+++|+.++++.+++..+. .. .+.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~~--~~~ 315 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--AP--VTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--cC--CCC
Confidence 55555555566666689999999888777777778888888889999999999999999999754322111 11 111
Q ss_pred CCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh
Q 000689 1078 RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1078 ~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l 1157 (1350)
...+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999854 2479999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1158 RRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
|++++||||||.+|++||||||.++.++++|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVI 1292 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl 1292 (1350)
++|+|||||||||+||++|++.|++.|++..+|+|+|+||||+++++.||+|+||
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-73 Score=709.49 Aligned_cols=535 Identities=24% Similarity=0.340 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 758 YALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVRE 837 (1350)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 837 (1350)
.++..++++++..++..+.++.+..+++....... ......+..+++++.++..++.+++.++...++.++..++|+
T Consensus 7 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 7 TFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666667777777775542211 112333445555666667788889999999999999999999
Q ss_pred HHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 838 KMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGD-RIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVV 916 (1350)
Q Consensus 838 ~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~-~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~ 916 (1350)
++|+++++.|+..+ +...+++.+|++.+++.+.. .+..++..++. ++.++++++++|++++++++.+|+++
T Consensus 84 ~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 84 PIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998432 45688899999999998877 44444444444 44456788999999999888888777
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000689 917 AATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCL 996 (1350)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 996 (1350)
+..++..+..+...++.++..++..+++.|+++|+++||+|+.++.+.++|.+..++..+...+.....+....+..++.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777778888899999999999999999999999999999998888777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCC
Q 000689 997 YASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVP 1076 (1350)
Q Consensus 997 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~ 1076 (1350)
.+..++.+++|++++..|.++++.++++..+......++..+......+.++..+.+|+.++++.+++.++. . ..
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~-~~- 310 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---M-PL- 310 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---C-CC-
Confidence 778888899999999999999999998888888888999999999999999999999999999765543211 1 11
Q ss_pred CCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH
Q 000689 1077 DRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1077 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~ 1156 (1350)
+...+.|+++||+|+||+. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+.
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1234679999999999753 347999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000689 1157 LRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1157 lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1236 (1350)
+|++++||||||.+|++|+||||.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||+
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988777999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1237 Lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+++|+|||||||||+||+++++.+.+.|++.. +|+|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999999875 68999999999999999999999999999999999999854
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-72 Score=701.69 Aligned_cols=535 Identities=17% Similarity=0.166 Sum_probs=444.4
Q ss_pred chHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 87 VGLGELFRFAD-SLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSW 165 (1350)
Q Consensus 87 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1350)
..+++++++++ +++ ..+++++++.++.+++....|++++.+++.... .. . .. ..+++++.++.+++.+
T Consensus 3 ~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~-~---~~----~~~~~~~~~~~~~~~~ 71 (555)
T TIGR01194 3 AAIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENF--LG-Q---GS----LFSFGGLCLLALLFRI 71 (555)
T ss_pred chHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc-c---hH----HHHHHHHHHHHHHHHH
Confidence 34678888887 654 445666667777777777777777777763210 00 0 01 1122333445567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 166 AEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFS 245 (1350)
Q Consensus 166 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1350)
+..++....+.++..++|.++|+|++++|++||++. ++|++++|+++|++.+++++.. +..++..++++++.++++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999998 9999999999999999998864 77788888888888999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHHHHHHH
Q 000689 246 AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGES--KALQAYSSALKVAQRL 323 (1350)
Q Consensus 246 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~--~~~~~~~~~~~~~~~~ 323 (1350)
++|.+++++++++|+.+++..++.++.++...+.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988888878788888888889999999999999999999999999954 5678888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 324 GYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFR 403 (1350)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~ 403 (1350)
..+.........++..++..+...+++++|++. |.++.|.+++++.+......|+..+...+..+++++++++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555555555555555555556666654 78999999999988888889999999999999999999999999
Q ss_pred HHccCCCCCCC---CC-CCc---cCCCCcceEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHH
Q 000689 404 IIDHKPSIDRN---SE-SGL---ELDSVSGLIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS 474 (1350)
Q Consensus 404 ~l~~~~~~~~~---~~-~~~---~~~~~~g~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ 474 (1350)
+++.+++.+.. +. ... ......+.|+++||+|+|++.+ +.++|+|+||++++||++|||||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 98632111000 00 000 1112246799999999997532 236999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCC
Q 000689 475 LIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPD 554 (1350)
Q Consensus 475 ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~ 554 (1350)
+|+|+|+|++|+|.+||.++++++.+++|++++||+|||++|++|+++|+ .+++++++++++++.+++++++..+|+
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence 99999999999999999999999999999999999999999999999995 456788899999999999999999999
Q ss_pred CccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEccCchhhhhcC
Q 000689 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALD-RF-MIGRTTLVIAHRLSTIRKAD 632 (1350)
Q Consensus 555 g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l~~~~~~d 632 (1350)
||||. .+|||||||||+||||++++|+|||||||||+||+++++.+++.+. .+ .+++|+|+||||++++..||
T Consensus 464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 99994 7899999999999999999999999999999999999999988764 34 46899999999999999999
Q ss_pred EEEEEeCCEEEEe
Q 000689 633 VVAVLQQGSVSEI 645 (1350)
Q Consensus 633 ~i~vl~~G~i~~~ 645 (1350)
+|++|++|+++|.
T Consensus 539 ~i~~l~~G~i~~~ 551 (555)
T TIGR01194 539 QIIKLAAGCIVKD 551 (555)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-72 Score=760.18 Aligned_cols=501 Identities=19% Similarity=0.233 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 159 AIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVT 238 (1350)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~ 238 (1350)
+..++.+++.+++.+.+.+...++|.++++++++.|+.|||+. ++|++++|+++|++.+++.+...+..++..++.+++
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 937 SVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788889999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHH
Q 000689 239 GFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALK 318 (1350)
Q Consensus 239 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~ 318 (1350)
.++++++++|.++++++.++.+++++..++.+..++..+......+.+.+++.|++.|+.+||+|++|+.+.++|.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998766544444444445555666666667777777888999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 319 VAQRLGYKSGFAKGMGLGATYFVVFCS--YALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKV 396 (1350)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1350)
...+..+.......+......++..+. .++++++|.. ..+.|.+..++.+.+....++..+...+..+..++.
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~ 1170 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMR 1170 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544433333333222222221111 1122223322 233343333334444455567777788889999999
Q ss_pred HHHHHHHHHccCCCCCCCCCC--------------CccC--CCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEE
Q 000689 397 AAAKIFRIIDHKPSIDRNSES--------------GLEL--DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIA 460 (1350)
Q Consensus 397 s~~ri~~~l~~~~~~~~~~~~--------------~~~~--~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ 460 (1350)
|.+||.++++.+++.+...+. ...+ -+..|.|+|+||+|+|+.. .+++|+|+||+|++||++|
T Consensus 1171 s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gekva 1249 (1490)
T TIGR01271 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVG 1249 (1490)
T ss_pred HHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEE
Confidence 999999999876653211100 0001 1245789999999999743 3579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHH
Q 000689 461 LVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAA 540 (1350)
Q Consensus 461 ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~ 540 (1350)
|||+||||||||+++|+|+|+ ++|+|+|||+|+++++.+.+|++|+||||||.||+|||||||.... .++++++++|+
T Consensus 1250 IvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL 1327 (1490)
T TIGR01271 1250 LLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVA 1327 (1490)
T ss_pred EECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHH
Confidence 999999999999999999997 7999999999999999999999999999999999999999997654 57899999999
Q ss_pred HHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 000689 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLV 620 (1350)
Q Consensus 541 ~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~ 620 (1350)
+.+++++++.++|+|+||.+|++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+
T Consensus 1328 ~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~ 1407 (1490)
T TIGR01271 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407 (1490)
T ss_pred HHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHHHh
Q 000689 621 IAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAA 670 (1350)
Q Consensus 621 itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~~ 670 (1350)
||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++.+...
T Consensus 1408 IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~--~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1408 SEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE--TSLFKQAMSAADRL 1455 (1490)
T ss_pred EecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC--CcHHHHHHHHhChh
Confidence 9999999999999999999999999999999975 78999998766543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-74 Score=723.36 Aligned_cols=501 Identities=24% Similarity=0.371 Sum_probs=370.8
Q ss_pred ceEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC---------
Q 000689 426 GLIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK--------- 495 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~--------- 495 (1350)
.+|+++|++++|+... +.++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3799999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-ccEEEEccCC--Cccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCcc---chhc
Q 000689 496 -SLKLR---WLR-QQIGLVSQEP--ALFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFD---TQVR 561 (1350)
Q Consensus 496 -~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~ 561 (1350)
+.+.. .+| ++||||+|+| .++. .||.|||.++.. ..+..+..+ .+.+.+..+ |+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 163 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILS 163 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHh
Confidence 22222 233 5799999998 5665 499999987521 112222111 122334444 442 3467
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEe
Q 000689 562 ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRK-ADVVAVLQ 638 (1350)
Q Consensus 562 ~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~ 638 (1350)
....+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|+|||+++.+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 7888999999999999999999999999999999999999999999999885 3 8999999999999865 99999999
Q ss_pred CCEEEEecChHHHHhccCCcHHH-HHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCcc
Q 000689 639 QGSVSEIGTHDELIAKGENGVYA-KLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFST 717 (1350)
Q Consensus 639 ~G~i~~~g~~~~l~~~~~~~~y~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1350)
+|+|++.|++++++..+. ..|. .+.... +... .. .+.
T Consensus 244 ~G~i~~~g~~~~~~~~~~-~~~~~~l~~~~-----------------~~~~-~~-----------~~~------------ 281 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQ-HPYTRALLAAV-----------------PQLG-AM-----------KGL------------ 281 (623)
T ss_pred CCeecccCCHHHhhcCCC-Chhhhhhhhcc-----------------Cccc-cc-----------ccc------------
Confidence 999999999888764311 1110 000000 0000 00 000
Q ss_pred CcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Q 000689 718 SDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIR 797 (1350)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1350)
T Consensus 282 -------------------------------------------------------------------------------- 281 (623)
T PRK10261 282 -------------------------------------------------------------------------------- 281 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHH
Q 000689 798 EIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIG 877 (1350)
Q Consensus 798 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~ 877 (1350)
..+-. +.. ...
T Consensus 282 -----------------------------------------------~~~~~-~~~--~~~------------------- 292 (623)
T PRK10261 282 -----------------------------------------------DYPRR-FPL--ISL------------------- 292 (623)
T ss_pred -----------------------------------------------cCCcc-ccc--ccc-------------------
Confidence 00000 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHh
Q 000689 878 DRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAF 957 (1350)
Q Consensus 878 ~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 957 (1350)
T Consensus 293 -------------------------------------------------------------------------------- 292 (623)
T PRK10261 293 -------------------------------------------------------------------------------- 292 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000689 958 NSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAE 1037 (1350)
Q Consensus 958 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1350)
.. ..
T Consensus 293 --------------~~---------------------------------------~~----------------------- 296 (623)
T PRK10261 293 --------------EH---------------------------------------PA----------------------- 296 (623)
T ss_pred --------------cc---------------------------------------cc-----------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC--------CCCcccceeEEEe
Q 000689 1038 TLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRP--------DIPIFRDLSLRAR 1109 (1350)
Q Consensus 1038 ~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~--------~~~vL~~vsl~I~ 1109 (1350)
...+..... . .. ....-++++||+++|+.+. ..++|+||||+|+
T Consensus 297 ---------------------~~~~~~~~~----~-~~--~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~ 348 (623)
T PRK10261 297 ---------------------KQEPPIEQD----T-VV--DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW 348 (623)
T ss_pred ---------------------ccCcccccc----c-cc--CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEc
Confidence 000000000 0 00 0011499999999996321 2369999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---HhhcccEEEccCC--ccCc-ccHHHHhccCC
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLRRHMAIVPQEP--CLFA-STIYENIAYGH 1183 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR~~i~~VpQdp--~LF~-gTIreNL~~~~ 1183 (1350)
+||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+.. .+|++|+||||+| .++. .|+.+|+.++.
T Consensus 349 ~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~ 428 (623)
T PRK10261 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPL 428 (623)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877543 4678899999998 3664 59999997531
Q ss_pred --CCC-CH----HHHHHHHHHhccH-HHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 000689 1184 --ESA-TE----SEIIEAARLANAD-KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255 (1350)
Q Consensus 1184 --~~~-td----~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~ 1255 (1350)
... .. +++.+.++..++. +.. .....+||||||||++|||||+.+|+|||||||||+||+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~L~~~gL~~~~~-----------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~ 497 (623)
T PRK10261 429 RVHGLLPGKAAAARVAWLLERVGLLPEHA-----------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS 497 (623)
T ss_pred HHcCCCCHHHHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111 11 3345555556553 222 2334579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchhHH-HHH
Q 000689 1256 SERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR-MIQ 1320 (1350)
Q Consensus 1256 te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~-l~~ 1320 (1350)
+...|.+.|+++. .|.|+|+|||+++.+.. ||||+||++|+|+|.|++++++.. +...|.+ ++.
T Consensus 498 ~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~-p~~~~~~~l~~ 565 (623)
T PRK10261 498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN-PQHPYTRKLMA 565 (623)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC-CCCHHHHHHHh
Confidence 9999999998865 37899999999999976 999999999999999999999875 5566655 444
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=708.54 Aligned_cols=462 Identities=24% Similarity=0.407 Sum_probs=359.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCeeCCCCCHH-HHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP--TSGQVLLDGHDIKSLKLR-WLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~i~g~~~~~~~~~-~~r 503 (1350)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.. ..|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 6999999999963 3699999999999999999999999999999999999996 899999999999877654 356
Q ss_pred ccEEEEccCCCcccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRPD-----ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
+++|||+|++.+|.. |++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999987431 12222211 123344444 55555666778999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||||+.+|+|||||||||+||+.+...+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998874 58999999999999875 999999999999987754332100
Q ss_pred CCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhh
Q 000689 656 ENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEK 735 (1350)
Q Consensus 656 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1350)
+.++
T Consensus 234 ------~~~~---------------------------------------------------------------------- 237 (506)
T PRK13549 234 ------DIIT---------------------------------------------------------------------- 237 (506)
T ss_pred ------HHHH----------------------------------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 000689 736 LAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELL 815 (1350)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 815 (1350)
T Consensus 238 -------------------------------------------------------------------------------- 237 (506)
T PRK13549 238 -------------------------------------------------------------------------------- 237 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 816 FNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACT 895 (1350)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~ 895 (1350)
. ++..+ .
T Consensus 238 ----------------------~-----------~~~~~---~------------------------------------- 244 (506)
T PRK13549 238 ----------------------M-----------MVGRE---L------------------------------------- 244 (506)
T ss_pred ----------------------H-----------hhCcC---c-------------------------------------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000689 896 AGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975 (1350)
Q Consensus 896 ~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~ 975 (1350)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 976 RRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSV 1055 (1350)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v 1055 (1350)
. .
T Consensus 245 -------------------------------------------~----------------------------------~- 246 (506)
T PRK13549 245 -------------------------------------------T----------------------------------A- 246 (506)
T ss_pred -------------------------------------------c----------------------------------c-
Confidence 0 0
Q ss_pred HHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccC
Q 000689 1056 FDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
. .+.. .. . .....|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|++
T Consensus 247 --~--~~~~-~~-------~--~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 247 --L--YPRE-PH-------T--IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred --c--cccc-cc-------C--CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 0 0000 00 0 0011489999999995322346999999999999999999999999999999999999
Q ss_pred C-CCccEEEECCccCCCCCH-HHhhcccEEEccCC---ccCc-ccHHHHhccCCC-C------CCHHHHHHHHHHhccHH
Q 000689 1136 E-PSSGRVMIDGKDIRKYNL-KSLRRHMAIVPQEP---CLFA-STIYENIAYGHE-S------ATESEIIEAARLANADK 1202 (1350)
Q Consensus 1136 ~-p~~G~I~iDG~di~~~~l-~~lR~~i~~VpQdp---~LF~-gTIreNL~~~~~-~------~td~ei~~al~~a~l~~ 1202 (1350)
+ |++|+|.++|.++...+. +.+|++++||||+| .+|. .|+.||+.++.. . .+.++. ...+.+
T Consensus 313 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~ 387 (506)
T PRK13549 313 PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILE 387 (506)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHH
Confidence 8 599999999999865543 45677899999997 3554 599999986421 0 111111 112333
Q ss_pred HHhcCCCCccc-cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCc
Q 000689 1203 FISSLPDGYKT-FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRL 1280 (1350)
Q Consensus 1203 ~I~~lp~Gldt-~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRl 1280 (1350)
+++.+ |++. ........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|||+|||++
T Consensus 388 ~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 388 SIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred HHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 44443 3321 2344456799999999999999999999999999999999999999999998864 589999999999
Q ss_pred hhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1281 STIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1281 sti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+.+.. |||+++|++|+++..|+++++.
T Consensus 466 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 466 PEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99866 9999999999999999988774
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=701.81 Aligned_cols=465 Identities=28% Similarity=0.459 Sum_probs=358.9
Q ss_pred eEEEEEEEEECCCC-CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCCHH
Q 000689 427 LIELKHVDFSYPSR-PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~~~~ 500 (1350)
+|+++|++++|+.. ...++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 69999999999631 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-ccEEEEccCCC--ccc-ccHHHHhhcCC---CCCCHHHHHHHHHHhchHHHHhcCCCCccc---hhcCCCCCC
Q 000689 501 W---LR-QQIGLVSQEPA--LFA-TTIKENILLGR---PDADLNEIEEAARVANAYSFIIKLPDGFDT---QVRERGVQL 567 (1350)
Q Consensus 501 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t---~~~~~g~~L 567 (1350)
. +| +++|||+|++. ++. .|+++|+.++. ...+.++..+ .+.+.+..+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 57999999985 444 49999986431 1112222111 122334333 4432 346678899
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 644 (1350)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999874 38999999999999875 99999999999999
Q ss_pred ecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccc
Q 000689 645 IGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSL 724 (1350)
Q Consensus 645 ~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1350)
.|+++++.... ...+.
T Consensus 238 ~g~~~~~~~~~-~~~~~--------------------------------------------------------------- 253 (529)
T PRK15134 238 QNRAATLFSAP-THPYT--------------------------------------------------------------- 253 (529)
T ss_pred eCCHHHHhhCC-CCHHH---------------------------------------------------------------
Confidence 99876654220 00000
Q ss_pred cCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 000689 725 DATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCY 804 (1350)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1350)
T Consensus 254 -------------------------------------------------------------------------------- 253 (529)
T PRK15134 254 -------------------------------------------------------------------------------- 253 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000689 805 LLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIV 884 (1350)
Q Consensus 805 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i 884 (1350)
+.++ ..+ .
T Consensus 254 --------------------------------~~~~----~~~-----~------------------------------- 261 (529)
T PRK15134 254 --------------------------------QKLL----NSE-----P------------------------------- 261 (529)
T ss_pred --------------------------------HHHH----HhC-----c-------------------------------
Confidence 0000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHH
Q 000689 885 QNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIV 964 (1350)
Q Consensus 885 ~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~ 964 (1350)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 965 GLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPD 1044 (1350)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1350)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCC--------CCCCcccceeEEEeCCCEEEE
Q 000689 1045 FIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSR--------PDIPIFRDLSLRARAGKTLAL 1116 (1350)
Q Consensus 1045 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaI 1116 (1350)
+ ..+...+ . . ...-|+++||+++|+.. .+.++|+|+||+|++||++||
T Consensus 262 ---------~------~~~~~~~--~----~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i 317 (529)
T PRK15134 262 ---------S------GDPVPLP--E----P---ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGL 317 (529)
T ss_pred ---------c------ccccccC--C----C---CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEE
Confidence 0 0000000 0 0 01148999999999621 124699999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hhcccEEEccCC--ccCc-ccHHHHhccCCC----CC
Q 000689 1117 VGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LRRHMAIVPQEP--CLFA-STIYENIAYGHE----SA 1186 (1350)
Q Consensus 1117 VG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR~~i~~VpQdp--~LF~-gTIreNL~~~~~----~~ 1186 (1350)
+|+||||||||+++|.|++ |++|+|++||.++...+... +|++++||||+| .+|. .|++||+.++.. ..
T Consensus 318 ~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~ 396 (529)
T PRK15134 318 VGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTL 396 (529)
T ss_pred ECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccC
Confidence 9999999999999999998 48999999999998766543 478899999998 3665 599999986421 01
Q ss_pred C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH
Q 000689 1187 T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262 (1350)
Q Consensus 1187 t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~ 1262 (1350)
. ++.+.++++..++.+ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+
T Consensus 397 ~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 466 (529)
T PRK15134 397 SAAQREQQVIAVMEEVGLDP----------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466 (529)
T ss_pred ChHHHHHHHHHHHHHcCCCH----------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH
Confidence 1 123444455554431 11233446799999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1263 ALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1263 ~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
.|++.. .|+|||+|||+++.+.. ||+|++|++|+|++.|++++++..
T Consensus 467 ~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 467 LLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred HHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 999875 37999999999999876 999999999999999999999865
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=698.10 Aligned_cols=459 Identities=23% Similarity=0.398 Sum_probs=354.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 505 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 6999999999963 35999999999999999999999999999999999999999999999999998777654 4567
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCC---------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDA---------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~---------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
++||+|++.++.. |++||+.++.... +.++..+ .+.+.+..+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988865 9999998764210 1111111 123344444 555555667789999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999999875 48999999999999975 99999999999998876554321
Q ss_pred ccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhh
Q 000689 654 KGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRH 733 (1350)
Q Consensus 654 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1350)
. ++.+ .
T Consensus 235 ~-------~~~~-------~------------------------------------------------------------ 240 (510)
T PRK09700 235 D-------DIVR-------L------------------------------------------------------------ 240 (510)
T ss_pred H-------HHHH-------H------------------------------------------------------------
Confidence 0 0000 0
Q ss_pred hhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Q 000689 734 EKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAE 813 (1350)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 813 (1350)
T Consensus 241 -------------------------------------------------------------------------------- 240 (510)
T PRK09700 241 -------------------------------------------------------------------------------- 240 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 814 LLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVA 893 (1350)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~ 893 (1350)
.+.....
T Consensus 241 ------------------------------------~~~~~~~------------------------------------- 247 (510)
T PRK09700 241 ------------------------------------MVGRELQ------------------------------------- 247 (510)
T ss_pred ------------------------------------hcCCCcc-------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHH
Q 000689 894 CTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQT 973 (1350)
Q Consensus 894 ~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~ 973 (1350)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 974 PLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMR 1053 (1350)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1053 (1350)
.
T Consensus 248 -------------------------------------------------------------------------------~ 248 (510)
T PRK09700 248 -------------------------------------------------------------------------------N 248 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhc
Q 000689 1054 SVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1054 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
+ .....+. +... . ....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|
T Consensus 249 ~---~~~~~~~--~~~~----~---~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 249 R---FNAMKEN--VSNL----A---HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred c---ccccccc--cccC----C---CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 0 0000000 0000 0 011499999999762 38999999999999999999999999999999999
Q ss_pred cCCCCccEEEECCccCCCCCH-HHhhcccEEEccCC---ccCc-ccHHHHhccCCCC-----------CCHHHHHHHHHH
Q 000689 1134 FYEPSSGRVMIDGKDIRKYNL-KSLRRHMAIVPQEP---CLFA-STIYENIAYGHES-----------ATESEIIEAARL 1197 (1350)
Q Consensus 1134 l~~p~~G~I~iDG~di~~~~l-~~lR~~i~~VpQdp---~LF~-gTIreNL~~~~~~-----------~td~ei~~al~~ 1197 (1350)
+++|++|+|.++|.++...+. ..+|++++||||++ .+|. -|++||+.++... ....+. .
T Consensus 312 l~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~ 386 (510)
T PRK09700 312 VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----Q 386 (510)
T ss_pred CCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----H
Confidence 999999999999999876543 45678999999984 4665 4999999865310 011110 1
Q ss_pred hccHHHHhcCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEE
Q 000689 1198 ANADKFISSLPDGYK-TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIV 1275 (1350)
Q Consensus 1198 a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~ 1275 (1350)
..+.+.++.+ |+. .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|||+
T Consensus 387 ~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~ 464 (510)
T PRK09700 387 RTAENQRELL--ALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILM 464 (510)
T ss_pred HHHHHHHHhc--CCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1122333332 232 12233445799999999999999999999999999999999999999999998864 5899999
Q ss_pred EecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1276 VAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1276 IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|||+++.+.. ||+|++|++|++++.+++.+
T Consensus 465 vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 465 VSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred EcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 9999998865 99999999999999887633
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=610.81 Aligned_cols=473 Identities=34% Similarity=0.520 Sum_probs=367.0
Q ss_pred eEEEEEEEEECCC-CCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCCHH
Q 000689 427 LIELKHVDFSYPS-RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~-~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~~~~ 500 (1350)
.++++|++..|.. .....++++|||+|++||++||||+||||||-..+.++|+++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4889999888852 2245699999999999999999999999999999999999864 379999999999988888
Q ss_pred HHhc----cEEEEccCCC--cccc-cHHHHh----hcCCCCCCHHHHHHHHHHhchHHHHh--cCCCCccchhcCCCCCC
Q 000689 501 WLRQ----QIGLVSQEPA--LFAT-TIKENI----LLGRPDADLNEIEEAARVANAYSFII--KLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 501 ~~r~----~i~~v~Q~~~--lf~~-ti~eNi----~~g~~~~~~~~~~~~~~~~~~~~~i~--~lp~g~~t~~~~~g~~L 567 (1350)
.+|. +|+++||||. |-+- ||...| .+-+. .+. ++..+.+.+.+. .+|+ -.-.+...+.+|
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg-~~~-----~~Ar~r~lelL~~VgI~~-p~~rl~~yPHeL 158 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG-LSR-----AAARARALELLELVGIPE-PEKRLDAYPHEL 158 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc-ccH-----HHHHHHHHHHHHHcCCCc-hhhhhhhCCccc
Confidence 7774 7999999994 2221 554444 33221 111 111112222222 2222 123566778999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 644 (1350)
||||||||.||.||+.+|++||-||||.|||......|.+.|+++. .|..+++|||+|..++. ||||+||.+|+|+|
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9999999999999999999999999999999999999999999885 48999999999999987 99999999999999
Q ss_pred ecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccc
Q 000689 645 IGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSL 724 (1350)
Q Consensus 645 ~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1350)
.|+.+++...+++.+.+.|...
T Consensus 239 ~~~t~~lF~~PqHpYTr~Ll~a---------------------------------------------------------- 260 (534)
T COG4172 239 TGTTETLFAAPQHPYTRKLLAA---------------------------------------------------------- 260 (534)
T ss_pred cCcHHHHhhCCCChHHHHHHhc----------------------------------------------------------
Confidence 9999888876533322222210
Q ss_pred cCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 000689 725 DATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCY 804 (1350)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1350)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000689 805 LLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIV 884 (1350)
Q Consensus 805 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i 884 (1350)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHH
Q 000689 885 QNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIV 964 (1350)
Q Consensus 885 ~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~ 964 (1350)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 965 GLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPD 1044 (1350)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1350)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCC--------CCCcccceeEEEeCCCEEEE
Q 000689 1045 FIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRP--------DIPIFRDLSLRARAGKTLAL 1116 (1350)
Q Consensus 1045 ~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaI 1116 (1350)
.|.-. +.+.+....--++.+||...||-++ ...+++++||+.++||++||
T Consensus 261 -----------------eP~g~-----~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGl 318 (534)
T COG4172 261 -----------------EPSGD-----PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGL 318 (534)
T ss_pred -----------------CCCCC-----CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEE
Confidence 00000 0000000111244444444444211 12478999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hhcccEEEccCCc--cC-cccHHHHhccC----CCCC
Q 000689 1117 VGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LRRHMAIVPQEPC--LF-ASTIYENIAYG----HESA 1186 (1350)
Q Consensus 1117 VG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR~~i~~VpQdp~--LF-~gTIreNL~~~----~~~~ 1186 (1350)
||+|||||||+-.+|+|+.++. |+|.++|.||..++.+. +|+++-+|+|||+ |= ..||.+-|.-| .+..
T Consensus 319 VGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~l 397 (534)
T COG4172 319 VGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKL 397 (534)
T ss_pred EecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCC
Confidence 9999999999999999999876 99999999999888765 7789999999995 21 24766665543 2333
Q ss_pred C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH
Q 000689 1187 T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQE 1262 (1350)
Q Consensus 1187 t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~ 1262 (1350)
+ ++.+.+|++.+|++.-... .....||||||||||||||++-+|++++||||||+||-.-+..|.+
T Consensus 398 s~~eR~~rv~~aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 398 SAAERDQRVIEALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred CHHHHHHHHHHHHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 3 3457888888888764432 2346799999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchhHHH
Q 000689 1263 ALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1263 ~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l 1318 (1350)
.|+++. .|-+-++|+|+|..++. ||+|+||.+|+|||+|+-++++.+ |.-.|.+-
T Consensus 468 LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~-P~~~YT~~ 525 (534)
T COG4172 468 LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN-PQHEYTRA 525 (534)
T ss_pred HHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcC-CCcHHHHH
Confidence 999875 47899999999999987 999999999999999999999988 78888664
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=678.65 Aligned_cols=535 Identities=17% Similarity=0.169 Sum_probs=432.8
Q ss_pred HHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 744 SFWRLAKMNS-PEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHS 822 (1350)
Q Consensus 744 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 822 (1350)
..++++++.+ +.++.++++++++++.++.....+++++.+++....... .....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ--------GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666 777777777777777777666666666655432110000 0111233445556678888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQW 902 (1350)
Q Consensus 823 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 902 (1350)
+...++.++..++|.++|+++++.|+.||++ +++|++++|+++|++.++.++.. +..++..++.+++.++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986 78999999999999999998864 77777888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHH
Q 000689 903 RLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSEL--MIVGLFSSNLQTPLRRCFW 980 (1350)
Q Consensus 903 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~ 980 (1350)
.+++++++.+|+.++...+.....+...++.++..+...+.+.|.+.|+++||+|+.++ ...++|.+..++..+....
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877776666555556566677777888999999999999999999954 5567777777766665554
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000689 981 KGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLD 1060 (1350)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~ 1060 (1350)
..........+..++.++..++.+|++.+. |.++++.++++..+......++..+......+.++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444555555555555665543 68899998888888888889999999999999999999999999976
Q ss_pred ccccCCC--CCCCCC-C---CCCCCCCcEEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHh
Q 000689 1061 RKTEIEP--DDPDAT-P---VPDRLRGEVELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQ 1132 (1350)
Q Consensus 1061 ~~~~~~~--~~~~~~-~---~~~~~~g~I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1132 (1350)
.+.+.++ +.+... . .+....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4221111 001000 0 1112346899999999997532 236999999999999999999999999999999999
Q ss_pred ccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCcc
Q 000689 1133 RFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYK 1212 (1350)
Q Consensus 1133 rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gld 1212 (1350)
|+|+|++|+|++||+|+++++.+++|+++++|+|||++|++|+++|+ .+++++++++++++.+++++++..+|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 356789999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEecCchhhhhcCEEE
Q 000689 1213 TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD-RA-CSGKTTIVVAHRLSTIRNAHVIA 1290 (1350)
Q Consensus 1213 t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~-~~-~~g~TvI~IaHRlsti~~~DrI~ 1290 (1350)
|. .+|||||||||+||||++++|+|||||||||+||++||+.+++.+. +. .+|+|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 94 6899999999999999999999999999999999999999998764 33 46899999999999999999999
Q ss_pred EEeCCeEEEe
Q 000689 1291 VIDDGKVAEL 1300 (1350)
Q Consensus 1291 Vl~~GrIvE~ 1300 (1350)
||++|+|+|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999974
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-72 Score=691.92 Aligned_cols=454 Identities=24% Similarity=0.400 Sum_probs=353.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 505 (1350)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 36999999999999999999999999999999999999999999999999987655443 4678
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPD------ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
++||+|++.++.. |++||+.++... .+.++..+ .+.+.+..+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999987431 11121111 123344444 555555666789999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999987654332100
Q ss_pred CcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhh
Q 000689 657 NGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKL 736 (1350)
Q Consensus 657 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1350)
.+.
T Consensus 232 -----~~~------------------------------------------------------------------------ 234 (501)
T PRK10762 232 -----SLI------------------------------------------------------------------------ 234 (501)
T ss_pred -----HHH------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 737 AFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLF 816 (1350)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 816 (1350)
..
T Consensus 235 ------------------------------------------------~~------------------------------ 236 (501)
T PRK10762 235 ------------------------------------------------EM------------------------------ 236 (501)
T ss_pred ------------------------------------------------HH------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 817 NTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTA 896 (1350)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~ 896 (1350)
++...
T Consensus 237 ---------------------------------~~~~~------------------------------------------ 241 (501)
T PRK10762 237 ---------------------------------MVGRK------------------------------------------ 241 (501)
T ss_pred ---------------------------------hcCCC------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000689 897 GFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLR 976 (1350)
Q Consensus 897 ~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~ 976 (1350)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 977 RCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVF 1056 (1350)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~ 1056 (1350)
.
T Consensus 242 ------------------------------------------------------------------------------~- 242 (501)
T PRK10762 242 ------------------------------------------------------------------------------L- 242 (501)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred HHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC
Q 000689 1057 DLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
...++... . . ...-.|+++||++ ++|+|+||+|++||++||+|+||||||||+++|.|+++
T Consensus 243 --~~~~~~~~----~---~--~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 243 --EDQYPRLD----K---A--PGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred --cccccccc----c---C--CCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 00000000 0 0 0011488999973 37999999999999999999999999999999999999
Q ss_pred CCccEEEECCccCCCCCH-HHhhcccEEEccCC---ccC-cccHHHHhccCCCC--------CCHHHHHHHHHHhccHHH
Q 000689 1137 PSSGRVMIDGKDIRKYNL-KSLRRHMAIVPQEP---CLF-ASTIYENIAYGHES--------ATESEIIEAARLANADKF 1203 (1350)
Q Consensus 1137 p~~G~I~iDG~di~~~~l-~~lR~~i~~VpQdp---~LF-~gTIreNL~~~~~~--------~td~ei~~al~~a~l~~~ 1203 (1350)
|++|+|.+||.++...+. +.+|++++||||+| .+| ..|++||+.++... .+.++. ...+.++
T Consensus 304 p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 378 (501)
T PRK10762 304 RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDF 378 (501)
T ss_pred CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHH
Confidence 999999999999987665 34678899999997 344 46999999864210 111111 1112333
Q ss_pred HhcCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch
Q 000689 1204 ISSLPDGYK-TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLS 1281 (1350)
Q Consensus 1204 I~~lp~Gld-t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRls 1281 (1350)
+..+ |+. .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++
T Consensus 379 l~~~--~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 379 IRLF--NIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred HHhc--CCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4333 332 22344556799999999999999999999999999999999999999999999875 5899999999999
Q ss_pred hhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1282 TIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1282 ti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
.+.. ||+|++|++|++++.|+++++.
T Consensus 457 ~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 457 EVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9866 9999999999999999887653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-72 Score=695.11 Aligned_cols=458 Identities=26% Similarity=0.466 Sum_probs=351.6
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEC---------------
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY--DPTSGQVLLD--------------- 490 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~i~--------------- 490 (1350)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CeeCC-------CCC---HHHHhccEEEEccC-CCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHH
Q 000689 491 --------GHDIK-------SLK---LRWLRQQIGLVSQE-PALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSF 548 (1350)
Q Consensus 491 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~ 548 (1350)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. ..+.++..+ .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 33321 111 13457789999998 57776 499999987532 122222111 22334
Q ss_pred HhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch
Q 000689 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLS 626 (1350)
Q Consensus 549 i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~ 626 (1350)
+..+ |++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 4444 66666677788999999999999999999999999999999999999999999999874 3899999999999
Q ss_pred hhhh-cCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCC
Q 000689 627 TIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGR 705 (1350)
Q Consensus 627 ~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1350)
.+.. ||+|++|++|++++.|+++++... |.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~~-------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV-----FM-------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH-----HH--------------------------------------------
Confidence 9875 999999999999877654433210 00
Q ss_pred CCccccccCCccCcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 706 SPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMS 785 (1350)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1350)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHH
Q 000689 786 VYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARL 865 (1350)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl 865 (1350)
. .
T Consensus 262 ------------------------------------------------------------------~---~--------- 263 (520)
T TIGR03269 262 ------------------------------------------------------------------E---G--------- 263 (520)
T ss_pred ------------------------------------------------------------------h---h---------
Confidence 0 0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 000689 866 ALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAG 945 (1350)
Q Consensus 866 ~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1350)
+ .
T Consensus 264 ------------------------------------~------------------------~------------------ 265 (520)
T TIGR03269 264 ------------------------------------V------------------------S------------------ 265 (520)
T ss_pred ------------------------------------c------------------------h------------------
Confidence 0 0
Q ss_pred HHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000689 946 EAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVF 1025 (1350)
Q Consensus 946 e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 1025 (1350)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCC--CCCCCcccc
Q 000689 1026 MVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPS--RPDIPIFRD 1103 (1350)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~--~~~~~vL~~ 1103 (1350)
++ ..+.. . +. ...-|+++||+++|+. +...++|+|
T Consensus 266 ----------------------------~~----~~~~~-~---~~-------~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 266 ----------------------------EV----EKECE-V---EV-------GEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ----------------------------hh----ccccc-c---CC-------CCceEEEeccEEEeccCCCCCceEEee
Confidence 00 00000 0 00 0114999999999963 112469999
Q ss_pred eeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEEC-Ccc---CCCCC---HHHhhcccEEEccCCccCc-ccH
Q 000689 1104 LSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID-GKD---IRKYN---LKSLRRHMAIVPQEPCLFA-STI 1175 (1350)
Q Consensus 1104 vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iD-G~d---i~~~~---l~~lR~~i~~VpQdp~LF~-gTI 1175 (1350)
+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.+ +...+ ...+|++++||||++.+|. .|+
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 382 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcH
Confidence 999999999999999999999999999999999999999996 643 33332 2356778999999998886 499
Q ss_pred HHHhccCCC-CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCC
Q 000689 1176 YENIAYGHE-SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250 (1350)
Q Consensus 1176 reNL~~~~~-~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTS 1250 (1350)
+||+.++.. ... ++++.++++..++.+. ..+.........||||||||++|||||+.+|+||||||||+
T Consensus 383 ~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999975311 111 1233444444444210 00001233446799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1251 ALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1251 aLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+||+.+.+.+.+.|++.. .|.|||+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 457 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 518 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518 (520)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999998874 37999999999999876 999999999999999999988653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=713.28 Aligned_cols=225 Identities=26% Similarity=0.412 Sum_probs=192.3
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..|+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 3469999999999999999999999999999999999999999999999999864 45667889
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
+|||||++.+|+. |++|||.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999875 99999987522 112222211 123344444 6666777888999999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcH
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGV 659 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 659 (1350)
.+|+|||||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++...|+
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy 1155 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcE
Confidence 999999999999999999999999999998789999999999999975 99999999999999999999987643343
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=688.52 Aligned_cols=456 Identities=24% Similarity=0.409 Sum_probs=350.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL-RWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 505 (1350)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 359999999999999999999999999999999999999999999999999875543 456788
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPD-----ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
||||+|++.+|.. |++||+.++... .+..+..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 11222111 223445544 5554456677899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCC
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGEN 657 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 657 (1350)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 9999999999999999999999999999998874 48999999999999865 99999999999986442100000
Q ss_pred cHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhh
Q 000689 658 GVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLA 737 (1350)
Q Consensus 658 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1350)
. +.
T Consensus 230 --------------------------------------------------------------------------~-~~-- 232 (501)
T PRK11288 230 --------------------------------------------------------------------------R-DQ-- 232 (501)
T ss_pred --------------------------------------------------------------------------H-HH--
Confidence 0 00
Q ss_pred hhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 738 FKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFN 817 (1350)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 817 (1350)
+
T Consensus 233 ----------~--------------------------------------------------------------------- 233 (501)
T PRK11288 233 ----------L--------------------------------------------------------------------- 233 (501)
T ss_pred ----------H---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 818 TLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAG 897 (1350)
Q Consensus 818 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~ 897 (1350)
.+.+ .... .
T Consensus 234 ----------------------~~~~-------~~~~---~--------------------------------------- 242 (501)
T PRK11288 234 ----------------------VQAM-------VGRE---I--------------------------------------- 242 (501)
T ss_pred ----------------------HHHh-------cCCC---c---------------------------------------
Confidence 0000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000689 898 FVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRR 977 (1350)
Q Consensus 898 ~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 977 (1350)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 978 CFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFD 1057 (1350)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~ 1057 (1350)
...
T Consensus 243 ---------------------------------------------------------------------------~~~-- 245 (501)
T PRK11288 243 ---------------------------------------------------------------------------GDI-- 245 (501)
T ss_pred ---------------------------------------------------------------------------ccc--
Confidence 000
Q ss_pred HhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC
Q 000689 1058 LLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137 (1350)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1137 (1350)
... .+. + ..+..++++|+++. .+++|+||+|++||++||+||||||||||+++|.|+++|
T Consensus 246 -~~~----~~~-----~---~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p 305 (501)
T PRK11288 246 -YGY----RPR-----P---LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR 305 (501)
T ss_pred -ccc----ccc-----C---CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC
Confidence 000 000 0 00114889999732 389999999999999999999999999999999999999
Q ss_pred CccEEEECCccCCCCC-HHHhhcccEEEccCCc---cC-cccHHHHhccCCCCC--------CHHHHHHHHHHhccHHHH
Q 000689 1138 SSGRVMIDGKDIRKYN-LKSLRRHMAIVPQEPC---LF-ASTIYENIAYGHESA--------TESEIIEAARLANADKFI 1204 (1350)
Q Consensus 1138 ~~G~I~iDG~di~~~~-l~~lR~~i~~VpQdp~---LF-~gTIreNL~~~~~~~--------td~ei~~al~~a~l~~~I 1204 (1350)
++|+|.+||.++...+ .+.+|++++|+||+|. +| ..|+.||+.++.... ...+.. ..+.+++
T Consensus 306 ~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l 380 (501)
T PRK11288 306 TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFI 380 (501)
T ss_pred CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHH
Confidence 9999999999987543 3456789999999973 55 479999998642110 111100 1122333
Q ss_pred hcCCCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh
Q 000689 1205 SSLPDGYK-TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLST 1282 (1350)
Q Consensus 1205 ~~lp~Gld-t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlst 1282 (1350)
..+ |++ ........+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|.|||+|||+++.
T Consensus 381 ~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~ 458 (501)
T PRK11288 381 RSL--NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE 458 (501)
T ss_pred Hhc--CcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 333 231 12233445799999999999999999999999999999999999999999998865 48999999999999
Q ss_pred hhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1283 IRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1283 i~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+.. ||+|++|++|++++.|++++..
T Consensus 459 ~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 459 VLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHhhCCEEEEEECCEEEEEEccccCC
Confidence 965 9999999999999999988765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-71 Score=685.66 Aligned_cols=459 Identities=23% Similarity=0.369 Sum_probs=349.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEECCeeCCCCCHHH-Hhc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP--TSGQVLLDGHDIKSLKLRW-LRQ 504 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~i~g~~~~~~~~~~-~r~ 504 (1350)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3599999999999999999999999999999999999987 7999999999998776543 467
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccchh-cCCCCCCChHHHHHHH
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPD------ADLNEIEEAARVANAYSFIIKLPDGFDTQV-RERGVQLSGGQKQRIA 576 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGqkqri~ 576 (1350)
++|||+|++.++.. |++||+.++... ...++..+ .+.+.+..+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988865 999999886421 11122111 223444444 443322 3446789999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998874 48899999999999876 999999999999876532110000
Q ss_pred cCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhh
Q 000689 655 GENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHE 734 (1350)
Q Consensus 655 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1350)
.+
T Consensus 232 -------~~----------------------------------------------------------------------- 233 (500)
T TIGR02633 232 -------DI----------------------------------------------------------------------- 233 (500)
T ss_pred -------HH-----------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000689 735 KLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAEL 814 (1350)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 814 (1350)
. .
T Consensus 234 ---------------------------------------------~----~----------------------------- 235 (500)
T TIGR02633 234 ---------------------------------------------I----T----------------------------- 235 (500)
T ss_pred ---------------------------------------------H----H-----------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 815 LFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVAC 894 (1350)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~ 894 (1350)
. ++..+
T Consensus 236 -----------------------~-----------~~~~~---------------------------------------- 241 (500)
T TIGR02633 236 -----------------------M-----------MVGRE---------------------------------------- 241 (500)
T ss_pred -----------------------H-----------HhCcc----------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHH
Q 000689 895 TAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTP 974 (1350)
Q Consensus 895 ~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~ 974 (1350)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 975 LRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRS 1054 (1350)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 1054 (1350)
. .
T Consensus 242 -----------------------------------------~------------------------------------~- 243 (500)
T TIGR02633 242 -----------------------------------------I------------------------------------T- 243 (500)
T ss_pred -----------------------------------------c------------------------------------c-
Confidence 0 0
Q ss_pred HHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 000689 1055 VFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1055 v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
. ..+. .+ . +. .+--|+++|++++|+..++.++|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 244 --~--~~~~--~~---~--~~---~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 244 --S--LYPH--EP---H--EI---GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred --c--cccc--cc---c--CC---CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 0 0000 00 0 00 01149999999999532234699999999999999999999999999999999999
Q ss_pred CCC-CccEEEECCccCCCCCH-HHhhcccEEEccCC---ccCc-ccHHHHhccCCCC-------CCHHHHHHHHHHhccH
Q 000689 1135 YEP-SSGRVMIDGKDIRKYNL-KSLRRHMAIVPQEP---CLFA-STIYENIAYGHES-------ATESEIIEAARLANAD 1201 (1350)
Q Consensus 1135 ~~p-~~G~I~iDG~di~~~~l-~~lR~~i~~VpQdp---~LF~-gTIreNL~~~~~~-------~td~ei~~al~~a~l~ 1201 (1350)
++| ++|+|.++|.++...+. ..+|++++||||++ .+|. .|+++|+.++... ...++. ...+.
T Consensus 310 ~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 384 (500)
T TIGR02633 310 YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIG 384 (500)
T ss_pred CCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHH
Confidence 995 89999999999865443 56788999999996 3565 5999999875210 111111 11122
Q ss_pred HHHhcCCCCccc-cccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecC
Q 000689 1202 KFISSLPDGYKT-FVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHR 1279 (1350)
Q Consensus 1202 ~~I~~lp~Gldt-~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHR 1279 (1350)
++++.+ |+.. ........||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. +|.|||+|||+
T Consensus 385 ~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 462 (500)
T TIGR02633 385 SAIQRL--KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE 462 (500)
T ss_pred HHHHhc--CccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 333333 2221 1233345799999999999999999999999999999999999999999998864 58999999999
Q ss_pred chhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1280 LSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1280 lsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
++.+.. ||+|++|++|+++..++.++
T Consensus 463 ~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 463 LAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999976 99999999999998776544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-71 Score=681.29 Aligned_cols=467 Identities=23% Similarity=0.405 Sum_probs=357.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHh-c
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR-Q 504 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r-~ 504 (1350)
..|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ .
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 3599999999999999999999999999999999999999999999999999877766544 5
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
.+|||+|++.++.. |++||+.++.... .+..+ .+.+.+..+ |++........+||||||||++|||||+.
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 79999999988875 9999999875321 11111 122333443 55555566778999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcHHH
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYA 661 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~ 661 (1350)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++... ....
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~---~~~~ 234 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD---DIIQ 234 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH---HHHH
Confidence 999999999999999999999999998874 48999999999999865 999999999999999887765321 0000
Q ss_pred HHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhhhhhh
Q 000689 662 KLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQ 741 (1350)
Q Consensus 662 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1350)
.+ . . ....
T Consensus 235 ~~-----------~--~---~~~~-------------------------------------------------------- 242 (510)
T PRK15439 235 AI-----------T--P---AARE-------------------------------------------------------- 242 (510)
T ss_pred HH-----------h--C---cccc--------------------------------------------------------
Confidence 00 0 0 0000
Q ss_pred hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 742 ASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQH 821 (1350)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 821 (1350)
T Consensus 243 -------------------------------------------------------------------------------- 242 (510)
T PRK15439 243 -------------------------------------------------------------------------------- 242 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 822 SFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQ 901 (1350)
Q Consensus 822 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~ 901 (1350)
....+.
T Consensus 243 -------------------------------~~~~~~------------------------------------------- 248 (510)
T PRK15439 243 -------------------------------KSLSAS------------------------------------------- 248 (510)
T ss_pred -------------------------------cccccc-------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000689 902 WRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWK 981 (1350)
Q Consensus 902 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 981 (1350)
.
T Consensus 249 --------------------------------------------------------------------------~----- 249 (510)
T PRK15439 249 --------------------------------------------------------------------------Q----- 249 (510)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000689 982 GQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDR 1061 (1350)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~ 1061 (1350)
.. . ...
T Consensus 250 ------------------------------------------------------------------------~~-~-~~~ 255 (510)
T PRK15439 250 ------------------------------------------------------------------------KL-W-LEL 255 (510)
T ss_pred ------------------------------------------------------------------------cc-c-ccc
Confidence 00 0 000
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccE
Q 000689 1062 KTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141 (1350)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1141 (1350)
+.. .+. . + ...--|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+
T Consensus 256 ~~~-~~~--~--~---~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~ 319 (510)
T PRK15439 256 PGN-RRQ--Q--A---AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR 319 (510)
T ss_pred ccc-ccc--c--C---CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE
Confidence 000 000 0 0 0011489999983 2699999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHH-hhcccEEEccCC---ccCc-ccHHHHhccCC----CC-CCHHHHHHHHHHhccHHHHhcCCCCc
Q 000689 1142 VMIDGKDIRKYNLKS-LRRHMAIVPQEP---CLFA-STIYENIAYGH----ES-ATESEIIEAARLANADKFISSLPDGY 1211 (1350)
Q Consensus 1142 I~iDG~di~~~~l~~-lR~~i~~VpQdp---~LF~-gTIreNL~~~~----~~-~td~ei~~al~~a~l~~~I~~lp~Gl 1211 (1350)
|.++|.++...+... +|.+|+||||++ .+|. .|+.+|+.... .. ....+. ...+.+++..+ |+
T Consensus 320 i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l 392 (510)
T PRK15439 320 IMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NI 392 (510)
T ss_pred EEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CC
Confidence 999999998776654 467899999996 3665 49999985320 10 011111 11123334433 33
Q ss_pred c-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCE
Q 000689 1212 K-TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHV 1288 (1350)
Q Consensus 1212 d-t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~Dr 1288 (1350)
+ .........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. |||
T Consensus 393 ~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred CCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 2 22344456799999999999999999999999999999999999999999999865 48999999999999976 999
Q ss_pred EEEEeCCeEEEecChhHHhhc
Q 000689 1289 IAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1289 I~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|++|++|+++..|+++++...
T Consensus 473 i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 473 VLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred EEEEECCEEEEEEccccCCHH
Confidence 999999999999999887643
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=613.62 Aligned_cols=535 Identities=25% Similarity=0.310 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 103 LMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSIKM 182 (1350)
Q Consensus 103 ~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (1350)
++.++++. .+..++....|.++-++-|.+....+ .+ .+..+.++.+++.++..++.+++.....+++.++..++
T Consensus 25 ~~~v~lfS-~~INiL~L~~~lyMLQVyDRVL~S~s-~~----TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L 98 (580)
T COG4618 25 FIGVGLFS-AVINLLALTGPLYMLQVYDRVLPSRS-VP----TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQL 98 (580)
T ss_pred HHHHHHHH-HHHHHHHHhhhHHHHHHHhhhccCCC-cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443 34445555556667777787654322 11 22222333333444556778888889999999999999
Q ss_pred HHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000689 183 RIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISE-KLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLI 261 (1350)
Q Consensus 183 R~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~ 261 (1350)
...+|....+.+..-- ..|+=..-+ +|.++++.+++. .+..++...|+. +.+.++|.+++++.++.++...++
T Consensus 99 ~~~v~~a~~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P-~yl~v~fl~Hp~lG~~a~~ga~iL 172 (580)
T COG4618 99 NGPVFAASFSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMP-LYLAVIFLFHPWLGLIALAGAIIL 172 (580)
T ss_pred ccHHHHHHHhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987776532 334333334 699999999976 444555556664 457778888999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 262 AVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFV 341 (1350)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1350)
+.+.++-.+..++-.++..+...+.+..++-+.+|.++|++.|+.....++|.+.+..+.....+.+-..+.+.+++..+
T Consensus 173 v~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~ 252 (580)
T COG4618 173 VVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRAL 252 (580)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCccC
Q 000689 342 VFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLEL 421 (1350)
Q Consensus 342 ~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 421 (1350)
-++....++..|+|++++|++|.|.+++....+.....|+-.....+.++..++.|.+|+.+++...|+.+ ...+.
T Consensus 253 Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~----~~m~L 328 (580)
T COG4618 253 RMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA----ERMPL 328 (580)
T ss_pred HHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc----CCCCC
Confidence 88889999999999999999999999986555555666899999999999999999999999998776532 22455
Q ss_pred CCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH
Q 000689 422 DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 422 ~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~ 501 (1350)
+..+|.+.++++++.-|+. ++++|+|+||++++||.+|||||||||||||.++|.|.++|.+|.|.+||-|++.++.+.
T Consensus 329 P~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 329 PAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 6678999999999987754 578999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+-++|||.||+..||+|||+|||+-..++.+.+.+.+|++.++.||.|.+||+||||.+|+.|..|||||||||+|||||
T Consensus 408 lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred hccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999877778899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|.||.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|+||++|++...|+-+|.+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999999886 59999999999999999999999999999999999998875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=611.28 Aligned_cols=494 Identities=26% Similarity=0.373 Sum_probs=446.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000689 804 YLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVI 883 (1350)
Q Consensus 804 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~ 883 (1350)
.+.+++.++..++..++..++.+++.++...++..+|...++++..- +..|+= ...-+|.+++++++...-...
T Consensus 67 vlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~-----~~~g~~-~Q~LrDL~qvR~Fltg~g~~A 140 (580)
T COG4618 67 VLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLR-----RGSGDG-LQPLRDLDQVRQFLTGTGLTA 140 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhh-----cCCCcc-ccchhhHHHHHHHHcCCCcch
Confidence 34455556677888999999999999999999999999998766542 122221 123479999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHH
Q 000689 884 VQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMI 963 (1350)
Q Consensus 884 i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 963 (1350)
+.+..++-+++.++|.++++++++.++...+++...++.....++-.++..+.....+.+...+..|.++|++.|+....
T Consensus 141 ~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l 220 (580)
T COG4618 141 FFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNL 220 (580)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHH
Confidence 99999999999999999999999999988888888888888777777777777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 964 VGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAP 1043 (1350)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1350)
.++|.+............+-..+...+++..+-.+..+.++..|+||+..|++|.|.+++.-+.......++-..+..+.
T Consensus 221 ~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wk 300 (580)
T COG4618 221 AKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWK 300 (580)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHH
Confidence 99999999998888888888888888999999999999999999999999999999998887777788889999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCC
Q 000689 1044 DFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123 (1350)
Q Consensus 1044 ~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSG 1123 (1350)
++..++.+..|+.+++...++..+. .+. |..+|.+.++++++.=|+. .+|+|+|+||++.|||.+|||||||||
T Consensus 301 q~~~Ar~s~~Rl~~lL~~~p~~~~~----m~L-P~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSG 374 (580)
T COG4618 301 QFVAARQSYKRLNELLAELPAAAER----MPL-PAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSG 374 (580)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCC----CCC-CCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCcc
Confidence 9999999999999999876654321 122 2357899999999976654 568999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHH
Q 000689 1124 KSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKF 1203 (1350)
Q Consensus 1124 KSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~ 1203 (1350)
||||.++|.|.+.|.+|.|.+||-|+++++.+.+-++|||.|||..||+|||+|||+-+.++.+++.|.+|++.|+.||.
T Consensus 375 KSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHel 454 (580)
T COG4618 375 KSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHEL 454 (580)
T ss_pred HHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999999999999999999999999999999999988788999999999999999999
Q ss_pred HhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh
Q 000689 1204 ISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLST 1282 (1350)
Q Consensus 1204 I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlst 1282 (1350)
|.+||+||||.||++|..|||||||||+|||||+.+|.+++||||.|+||.+-|+.+.++|.... +|+|+|+||||++.
T Consensus 455 Il~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~ 534 (580)
T COG4618 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA 534 (580)
T ss_pred HHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998865 69999999999999
Q ss_pred hhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1283 IRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1283 i~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+..+|+|+||++|++..+|+-+|.+++
T Consensus 535 L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 535 LASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999876
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=676.81 Aligned_cols=453 Identities=24% Similarity=0.361 Sum_probs=348.1
Q ss_pred EEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH-HHHhccEEE
Q 000689 430 LKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL-RWLRQQIGL 508 (1350)
Q Consensus 430 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~ 508 (1350)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 369999999999999999999999999999999999999999999999999876554 446778999
Q ss_pred EccCCCccc-ccHHHHhhcCCCC-----CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 509 VSQEPALFA-TTIKENILLGRPD-----ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 509 v~Q~~~lf~-~ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|+|++.++. .|++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 4999999986421 11122111 223444554 6665666778899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcHH
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVY 660 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y 660 (1350)
.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998874 58999999999999865 999999999999987764332100
Q ss_pred HHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhhhhh
Q 000689 661 AKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKE 740 (1350)
Q Consensus 661 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1350)
.+.+
T Consensus 225 -~~~~--------------------------------------------------------------------------- 228 (491)
T PRK10982 225 -KIIA--------------------------------------------------------------------------- 228 (491)
T ss_pred -HHHH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 741 QASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQ 820 (1350)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 820 (1350)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 821 HSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVL 900 (1350)
Q Consensus 821 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~ 900 (1350)
. ++....
T Consensus 229 -----------------~-----------~~~~~~--------------------------------------------- 235 (491)
T PRK10982 229 -----------------M-----------MVGRSL--------------------------------------------- 235 (491)
T ss_pred -----------------H-----------HhCCCc---------------------------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000689 901 QWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFW 980 (1350)
Q Consensus 901 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 980 (1350)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000689 981 KGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLD 1060 (1350)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~ 1060 (1350)
.. .
T Consensus 236 ------------------------------------------------------------------------~~-----~ 238 (491)
T PRK10982 236 ------------------------------------------------------------------------TQ-----R 238 (491)
T ss_pred ------------------------------------------------------------------------cc-----c
Confidence 00 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCcc
Q 000689 1061 RKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140 (1350)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1140 (1350)
.+.+ + .. .....|+++|++++| .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|
T Consensus 239 ~~~~--~-~~-------~~~~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 303 (491)
T PRK10982 239 FPDK--E-NK-------PGEVILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG 303 (491)
T ss_pred cccc--c-CC-------CCCcEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc
Confidence 0000 0 00 001148999999975 1489999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHH-HhhcccEEEccCCc---cCc-ccHHHH-----hccCCC--C-CCHHHHHHHHHHhccHHHHhcC
Q 000689 1141 RVMIDGKDIRKYNLK-SLRRHMAIVPQEPC---LFA-STIYEN-----IAYGHE--S-ATESEIIEAARLANADKFISSL 1207 (1350)
Q Consensus 1141 ~I~iDG~di~~~~l~-~lR~~i~~VpQdp~---LF~-gTIreN-----L~~~~~--~-~td~ei~~al~~a~l~~~I~~l 1207 (1350)
+|.+||.++...+.. .+|+.++|+||++. +|. .|+++| +..... . .+..+..+ .+.+++..+
T Consensus 304 ~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~ 378 (491)
T PRK10982 304 TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM 378 (491)
T ss_pred EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc
Confidence 999999999876654 45778999999963 555 467666 332111 1 11111111 122333333
Q ss_pred CCCcc-ccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh
Q 000689 1208 PDGYK-TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN 1285 (1350)
Q Consensus 1208 p~Gld-t~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~ 1285 (1350)
|+. -.......+||||||||++||||++.+|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+..
T Consensus 379 --~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~ 456 (491)
T PRK10982 379 --RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLG 456 (491)
T ss_pred --CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHh
Confidence 221 11344456799999999999999999999999999999999999999999998864 58999999999999865
Q ss_pred -cCEEEEEeCCeEEEecChhHH
Q 000689 1286 -AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1286 -~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|||+++|++|+++..++.+++
T Consensus 457 ~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 457 ITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred hCCEEEEEECCEEEEEEccccC
Confidence 999999999999988876543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-69 Score=667.85 Aligned_cols=453 Identities=23% Similarity=0.320 Sum_probs=346.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5899999999974 3599999999999999999999999999999999999999999999999888776766777789
Q ss_pred EEEccCCCc--c-------cccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 507 GLVSQEPAL--F-------ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 507 ~~v~Q~~~l--f-------~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
+|++|++.+ + ..|++||+.++.. ..+++. +.+..+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK--DPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh--HHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 3588998865310 111222 233333 55555667778999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||||+.+|++|||||||++||+++.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 225 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ- 225 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc-
Confidence 999999999999999999999999999999998875 47899999999999876 999999999999998887665421
Q ss_pred CCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhh
Q 000689 656 ENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEK 735 (1350)
Q Consensus 656 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1350)
.....+...
T Consensus 226 --~~~~~~~~~--------------------------------------------------------------------- 234 (490)
T PRK10938 226 --ALVAQLAHS--------------------------------------------------------------------- 234 (490)
T ss_pred --hhhhhhhhh---------------------------------------------------------------------
Confidence 000000000
Q ss_pred hhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 000689 736 LAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELL 815 (1350)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 815 (1350)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 816 FNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACT 895 (1350)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~ 895 (1350)
+ . .... +
T Consensus 235 ---------------------~---------~--~~~~-~---------------------------------------- 241 (490)
T PRK10938 235 ---------------------E---------Q--LEGV-Q---------------------------------------- 241 (490)
T ss_pred ---------------------h---------c--cCcc-c----------------------------------------
Confidence 0 0 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000689 896 AGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975 (1350)
Q Consensus 896 ~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~ 975 (1350)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 976 RRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSV 1055 (1350)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v 1055 (1350)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccC
Q 000689 1056 FDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
.+...++....... ....-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+.
T Consensus 242 -----~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~ 310 (490)
T PRK10938 242 -----LPEPDEPSARHALP---ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310 (490)
T ss_pred -----cCcccccccccccC---CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 00000000000000 00124999999999963 35999999999999999999999999999999999988
Q ss_pred CC-CccEEEECCccCCC-CCHHHhhcccEEEccCCccCc---ccHHHHhccCCC-------CCC---HHHHHHHHHHhcc
Q 000689 1136 EP-SSGRVMIDGKDIRK-YNLKSLRRHMAIVPQEPCLFA---STIYENIAYGHE-------SAT---ESEIIEAARLANA 1200 (1350)
Q Consensus 1136 ~p-~~G~I~iDG~di~~-~~l~~lR~~i~~VpQdp~LF~---gTIreNL~~~~~-------~~t---d~ei~~al~~a~l 1200 (1350)
+| ++|+|.++|.++.. .+...+|++|+|++|++.++. .|+++++.++.. ... ++++.++++..++
T Consensus 311 ~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 390 (490)
T PRK10938 311 PQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI 390 (490)
T ss_pred CcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC
Confidence 75 69999999987632 234456889999999987642 467777653211 011 1234455555554
Q ss_pred HHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEec
Q 000689 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SG-KTTIVVAH 1278 (1350)
Q Consensus 1201 ~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g-~TvI~IaH 1278 (1350)
.+. .......+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. ++ .|||+|||
T Consensus 391 ~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsH 460 (490)
T PRK10938 391 DKR----------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460 (490)
T ss_pred chh----------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 320 2233345799999999999999999999999999999999999999999999875 34 47999999
Q ss_pred Cchhhhh--cCEEEEEeCCeEEEec
Q 000689 1279 RLSTIRN--AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1279 Rlsti~~--~DrI~Vl~~GrIvE~G 1301 (1350)
+++.+.. ||+|++|++|+|++.-
T Consensus 461 d~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 461 HAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred chhhhhhhhheeEEEecCCceEEee
Confidence 9999964 7999999999998753
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=705.27 Aligned_cols=212 Identities=22% Similarity=0.395 Sum_probs=181.4
Q ss_pred cEEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHh
Q 000689 1082 EVELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE---PSSGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~iDG~di~~~~l~~l 1157 (1350)
.++++||++.|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3479999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcccEEEccCCc-cCcccHHHHhccCC----C-CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1158 RRHMAIVPQEPC-LFASTIYENIAYGH----E-SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1158 R~~i~~VpQdp~-LF~gTIreNL~~~~----~-~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
|++++||||++. ++..|+||||.++. + +.++++ +.++++..++. +..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999975 55679999998642 1 234433 34455555543 4578999988889999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCcCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhh--hhcCEEEEEeCC-eEEEecC
Q 000689 1228 QRVAIARAFVRKAE-IMLLDEATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTI--RNAHVIAVIDDG-KVAELGS 1302 (1350)
Q Consensus 1228 QrlaiARALLr~p~-ILlLDEaTSaLD~~te~~I~~~L~~~-~~g~TvI~IaHRlsti--~~~DrI~Vl~~G-rIvE~Gt 1302 (1350)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999974 569999999997 9999998
Q ss_pred hh
Q 000689 1303 HS 1304 (1350)
Q Consensus 1303 ~~ 1304 (1350)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=649.25 Aligned_cols=524 Identities=17% Similarity=0.194 Sum_probs=399.7
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 93 FRFADSLDYVLMAIGSLGAFVHGCSFPI-FLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCW 171 (1350)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1350)
++|.+++++. ++++++++++..++... .|++.+.++|.... +.. .+.. ++++.++.+++.++..++.
T Consensus 5 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~~----~~~~----~~~~~~~~~~~~~~~~~~~ 72 (547)
T PRK10522 5 RLVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT---SLL----VLPE----FLGLLLLLMAVTLGSQLAL 72 (547)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cch----HHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3455555443 34455555555554443 34555677775421 111 1111 1112222345667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000689 172 MWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAVWQLA 251 (1350)
Q Consensus 172 ~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (1350)
.+++.++..++|.++|++++++|++||+++ ++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.++
T Consensus 73 ~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~ 150 (547)
T PRK10522 73 TTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKML 150 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 899999999999999999999999999998 999999999999999998765 467788888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHH
Q 000689 252 LVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGE---SKALQAYSSALKVAQRLGYKSG 328 (1350)
Q Consensus 252 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e---~~~~~~~~~~~~~~~~~~~~~~ 328 (1350)
+++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+..
T Consensus 151 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (547)
T PRK10522 151 LVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRAD 229 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence 99999999998888888888888888889999999999999999999996 5544 4567888888877777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000689 329 FAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408 (1350)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 408 (1350)
........+..++..+...+++++++... ..+.+.+..+.++......|+..+...+..++.++.+.+|+.++++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~ 306 (547)
T PRK10522 230 TFHLSAVNWSNIMMLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAP 306 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 54444333333332222333344443321 123333333333334445688899999999999999999999997654
Q ss_pred CCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 000689 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 409 ~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 488 (1350)
++.+. + ..... +..+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 307 ~~~~~-~-~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 307 YKAEF-P-RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccc-c-ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 32211 1 11111 113579999999999742 3699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 489 LDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 489 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
+||+++++++.+++|++|+||+|||.+|++|++|| + ++.++++++++++..++.+++. .|+|. .+|.+||
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LS 451 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLS 451 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCC
Confidence 99999999999999999999999999999999999 2 3455666666666555544432 12221 1378999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEe-
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI- 645 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~- 645 (1350)
||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999987654 48999999999999999999999999999987
Q ss_pred cChH
Q 000689 646 GTHD 649 (1350)
Q Consensus 646 g~~~ 649 (1350)
|++.
T Consensus 532 ~~~~ 535 (547)
T PRK10522 532 GEER 535 (547)
T ss_pred CCch
Confidence 4443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=658.55 Aligned_cols=483 Identities=21% Similarity=0.354 Sum_probs=345.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..|
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i 66 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERL 66 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 3789999999963 36999999999999999999999999999999999999999999999973 369
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC----------------CHH---HHHHH----------HHHhchHHHHhcCCCCc
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA----------------DLN---EIEEA----------ARVANAYSFIIKLPDGF 556 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~lp~g~ 556 (1350)
|||+|++.+|.. |++||+.++.... ..+ .+.+. .....+.+.+..+ |+
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl 144 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GI 144 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CC
Confidence 999999988765 9999998753100 000 00000 0012234455555 55
Q ss_pred cchh-cCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE
Q 000689 557 DTQV-RERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVV 634 (1350)
Q Consensus 557 ~t~~-~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 634 (1350)
+... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|
T Consensus 145 ~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i 222 (530)
T PRK15064 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHM 222 (530)
T ss_pred ChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceE
Confidence 5433 345689999999999999999999999999999999999999999999874 48999999999999876 9999
Q ss_pred EEEeCCEEE-EecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCcccccc
Q 000689 635 AVLQQGSVS-EIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLS 713 (1350)
Q Consensus 635 ~vl~~G~i~-~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1350)
++|++|+++ +.|++++.++.. ...+....+....
T Consensus 223 ~~l~~g~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~-------------------------------------------- 257 (530)
T PRK15064 223 ADLDYGELRVYPGNYDEYMTAA-TQARERLLADNAK-------------------------------------------- 257 (530)
T ss_pred EEEeCCEEEEecCCHHHHHHHH-HHHHHHHHHHHHH--------------------------------------------
Confidence 999999994 788887765420 0000000000000
Q ss_pred CCccCcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 000689 714 DFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHA 793 (1350)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1350)
...+ .+.
T Consensus 258 -----------------~~~~----------~~~---------------------------------------------- 264 (530)
T PRK15064 258 -----------------KKAQ----------IAE---------------------------------------------- 264 (530)
T ss_pred -----------------HHHH----------HHH----------------------------------------------
Confidence 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHH
Q 000689 794 YMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVR 873 (1350)
Q Consensus 794 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~ 873 (1350)
+++ ... +. . ...
T Consensus 265 -----------------------------------------~~~-~~~---~~-----~---~~~--------------- 276 (530)
T PRK15064 265 -----------------------------------------LQS-FVS---RF-----S---ANA--------------- 276 (530)
T ss_pred -----------------------------------------HHH-HHH---Hh-----h---ccc---------------
Confidence 000 000 00 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHH
Q 000689 874 SAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRT 953 (1350)
Q Consensus 874 ~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~t 953 (1350)
..
T Consensus 277 ---------------------------------------------------------~~--------------------- 278 (530)
T PRK15064 277 ---------------------------------------------------------SK--------------------- 278 (530)
T ss_pred ---------------------------------------------------------hh---------------------
Confidence 00
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000689 954 VAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSAN 1033 (1350)
Q Consensus 954 Ira~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 1033 (1350)
+ ....
T Consensus 279 --~---------------~~~~---------------------------------------------------------- 283 (530)
T PRK15064 279 --A---------------KQAT---------------------------------------------------------- 283 (530)
T ss_pred --h---------------HHHH----------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hcccccCCCCCCCCCC-CCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeC
Q 000689 1034 GAAETLTLAPDFIKGGRAMRSVFDL--LDRKTEIEPDDPDATP-VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARA 1110 (1350)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~a~~~v~~~--~~~~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~ 1110 (1350)
....++.+. ...++..........+ .+...+..|+++||+++|+. .++|+|+||+|++
T Consensus 284 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~ 344 (530)
T PRK15064 284 ----------------SRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEA 344 (530)
T ss_pred ----------------HHHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECC
Confidence 000000000 0000000000000000 00001235999999999964 3699999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCc--cCc-ccHHHHhccCC-CCC
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC--LFA-STIYENIAYGH-ESA 1186 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~--LF~-gTIreNL~~~~-~~~ 1186 (1350)
||++||+||||||||||+++|.|+++|++|+|.++| +.+++|+||++. ++. .|+++|+.... ...
T Consensus 345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~ 413 (530)
T PRK15064 345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGD 413 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCc
Confidence 999999999999999999999999999999999998 357999999984 443 59999997432 222
Q ss_pred CHHHHHHHHHHhccH-HHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 000689 1187 TESEIIEAARLANAD-KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALD 1265 (1350)
Q Consensus 1187 td~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~ 1265 (1350)
.++++.+.++..++. +.. .....+||||||||++||||++.+|+||||||||++||+.+...+.+.|+
T Consensus 414 ~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 482 (530)
T PRK15064 414 DEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE 482 (530)
T ss_pred cHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 345566677776652 222 23346799999999999999999999999999999999999999999998
Q ss_pred HhcCCceEEEEecCchhhhh-cCEEEEEeCCeEE-EecChhHHhhc
Q 000689 1266 RACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA-ELGSHSHLLKN 1309 (1350)
Q Consensus 1266 ~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv-E~Gt~~eLl~~ 1309 (1350)
+. +.|||+|||+++.+.. ||||++|++|+++ +.|++++++..
T Consensus 483 ~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 483 KY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 86 4599999999999876 9999999999998 78999998765
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=647.21 Aligned_cols=483 Identities=24% Similarity=0.347 Sum_probs=338.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 6999999999962 246999999999999999999999999999999999999999999999752 369
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC----------------CH----------HHHHHHHHH-------hchHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA----------------DL----------NEIEEAARV-------ANAYSFIIKL 552 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~----------------~~----------~~~~~~~~~-------~~~~~~i~~l 552 (1350)
|||+|+|.+++. |++||+.++.... .. .++.+.... ..+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999865 9999998763100 00 001111111 1122333443
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-c
Q 000689 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-A 631 (1350)
Q Consensus 553 p~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 631 (1350)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2456677999999999999999999999999999999999999999999998863 599999999999976 9
Q ss_pred CEEEEEeCCEEE-EecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccc
Q 000689 632 DVVAVLQQGSVS-EIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSR 710 (1350)
Q Consensus 632 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1350)
|+|++|++|+++ ..|++++..+.. ..+........
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~---------~~~~~~~~~~~----------------------------------- 263 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQK---------AKRLAQEEKQE----------------------------------- 263 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHH---------HHHHHHHHHHH-----------------------------------
Confidence 999999999986 678777664320 00000000000
Q ss_pred cccCCccCcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000689 711 RLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNP 790 (1350)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1350)
+. .
T Consensus 264 -----------------------~~---------~--------------------------------------------- 266 (556)
T PRK11819 264 -----------------------AA---------R--------------------------------------------- 266 (556)
T ss_pred -----------------------HH---------H---------------------------------------------
Confidence 00 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHH
Q 000689 791 DHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDAN 870 (1350)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~ 870 (1350)
...+++ +. .|..
T Consensus 267 -----------------------------------------~~~~~~-~~--------~~~~------------------ 278 (556)
T PRK11819 267 -----------------------------------------QKALKR-EL--------EWVR------------------ 278 (556)
T ss_pred -----------------------------------------HHHHHH-HH--------HHHH------------------
Confidence 000000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcc
Q 000689 871 NVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGN 950 (1350)
Q Consensus 871 ~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 950 (1350)
+ . ...
T Consensus 279 ------------------------------------------------------------~----~-~~~---------- 283 (556)
T PRK11819 279 ------------------------------------------------------------Q----S-PKA---------- 283 (556)
T ss_pred ------------------------------------------------------------H----h-hhh----------
Confidence 0 0 000
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000689 951 VRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMV 1030 (1350)
Q Consensus 951 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 1030 (1350)
+.-..+ ..
T Consensus 284 ----~~~~~~------------~~-------------------------------------------------------- 291 (556)
T PRK11819 284 ----RQAKSK------------AR-------------------------------------------------------- 291 (556)
T ss_pred ----hHHHHH------------HH--------------------------------------------------------
Confidence 000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-CCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEe
Q 000689 1031 SANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEP-DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109 (1350)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~ 1109 (1350)
....++..+ ..+.+.+. ......+.+...+.-|+++||+++|++ .++|+|+||+|+
T Consensus 292 ------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~ 348 (556)
T PRK11819 292 ------------------LARYEELLS--EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLP 348 (556)
T ss_pred ------------------HHHHHHhhc--ccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEc
Confidence 000000000 00000000 000000000011235999999999964 369999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCC-ccCc-ccHHHHhccCCCC--
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP-CLFA-STIYENIAYGHES-- 1185 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp-~LF~-gTIreNL~~~~~~-- 1185 (1350)
+||++||+|+||||||||+++|.|+++|++|+|.+++ ++ +|+||||++ .++. -|++||+.++...
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhccccc
Confidence 9999999999999999999999999999999999954 21 699999997 5654 5999999865321
Q ss_pred --CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 000689 1186 --ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263 (1350)
Q Consensus 1186 --~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~ 1263 (1350)
..+.+..++++..++.+ .........||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 418 ~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 487 (556)
T PRK11819 418 VGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEA 487 (556)
T ss_pred ccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 11223333444444321 012333457999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEecCchhhhh-cCEEEEEeC-CeEEE-ecChhHHhhc
Q 000689 1264 LDRACSGKTTIVVAHRLSTIRN-AHVIAVIDD-GKVAE-LGSHSHLLKN 1309 (1350)
Q Consensus 1264 L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~-GrIvE-~Gt~~eLl~~ 1309 (1350)
|++. .+ |+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 488 l~~~-~~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 488 LLEF-PG-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhC-CC-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9986 34 99999999999876 999999986 88874 7888877654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=641.98 Aligned_cols=482 Identities=24% Similarity=0.352 Sum_probs=336.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 6899999999962 23699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC-----------------CCH---------HHHHHHHHHhc-------hHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD-----------------ADL---------NEIEEAARVAN-------AYSFIIKL 552 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 552 (1350)
|||+|+|.+++. |++|||.++... ... .++.++.+.++ +.+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998864 999999875311 000 11222222222 22233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-c
Q 000689 553 PDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-A 631 (1350)
Q Consensus 553 p~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 631 (1350)
|++. ......+||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4421 35567899999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCCEEE-EecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccc
Q 000689 632 DVVAVLQQGSVS-EIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSR 710 (1350)
Q Consensus 632 d~i~vl~~G~i~-~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1350)
|+|++|++|+++ ..|++++.++.. ..+........
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~---------~~~~~~~~~~~----------------------------------- 261 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQK---------EKRLEQEEKEE----------------------------------- 261 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHH---------HHHHHHHHHHH-----------------------------------
Confidence 999999999976 668777665320 00000000000
Q ss_pred cccCCccCcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000689 711 RLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNP 790 (1350)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1350)
.+
T Consensus 262 --------------------~~---------------------------------------------------------- 263 (552)
T TIGR03719 262 --------------------SA---------------------------------------------------------- 263 (552)
T ss_pred --------------------HH----------------------------------------------------------
Confidence 00
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHH
Q 000689 791 DHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDAN 870 (1350)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~ 870 (1350)
..+.+ .|..
T Consensus 264 --------------------------------------------~~~~~-----------------------~~~~---- 272 (552)
T TIGR03719 264 --------------------------------------------RQKAL-----------------------KREL---- 272 (552)
T ss_pred --------------------------------------------HHHHH-----------------------HHHH----
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHcc
Q 000689 871 NVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGN 950 (1350)
Q Consensus 871 ~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 950 (1350)
.| + + +.. ...
T Consensus 273 ------------------------------~~------------------~-----~---~~~---------~~~----- 282 (552)
T TIGR03719 273 ------------------------------EW------------------V-----R---SSP---------KAR----- 282 (552)
T ss_pred ------------------------------HH------------------H-----H---hhh---------hhH-----
Confidence 00 0 0 000 000
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 000689 951 VRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMV 1030 (1350)
Q Consensus 951 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 1030 (1350)
++ ..+ ....
T Consensus 283 ----~~-~~~-~~~~----------------------------------------------------------------- 291 (552)
T TIGR03719 283 ----QA-KSK-ARLA----------------------------------------------------------------- 291 (552)
T ss_pred ----HH-HHH-HHHH-----------------------------------------------------------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEe
Q 000689 1031 SANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIE-PDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109 (1350)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~ 1109 (1350)
..++..+ ..++..+ .........+...+.-|+++|++++|++ .++|+|+||+|+
T Consensus 292 --------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~ 346 (552)
T TIGR03719 292 --------------------RYEELLS--QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLP 346 (552)
T ss_pred --------------------HHHhhhh--hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECC---eeeeccceEEEc
Confidence 0000000 0000000 0000000000011235999999999964 369999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCc-cCc-ccHHHHhccCCCC--
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC-LFA-STIYENIAYGHES-- 1185 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~-LF~-gTIreNL~~~~~~-- 1185 (1350)
+||++||+|+||||||||+++|.|+.+|++|+|.+++ ++ +|+|+||++. ++. .|++||+.++...
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccc
Confidence 9999999999999999999999999999999999954 21 6999999973 554 5999999875321
Q ss_pred CC--HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 000689 1186 AT--ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEA 1263 (1350)
Q Consensus 1186 ~t--d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~ 1263 (1350)
.. +.+..++++..++.+. ........||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 416 ~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 485 (552)
T TIGR03719 416 LGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEA 485 (552)
T ss_pred cCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 11 2223333333333210 12334467999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEecCchhhhh-cCEEEEEeC-CeEE-EecChhHHhh
Q 000689 1264 LDRACSGKTTIVVAHRLSTIRN-AHVIAVIDD-GKVA-ELGSHSHLLK 1308 (1350)
Q Consensus 1264 L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~-GrIv-E~Gt~~eLl~ 1308 (1350)
|++.. + |||+|||+++.+.. ||+|++|++ |+++ ..|+++++++
T Consensus 486 l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 486 LLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99863 3 89999999999876 999999997 6877 4577776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=630.36 Aligned_cols=471 Identities=19% Similarity=0.247 Sum_probs=372.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 813 ELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLV 892 (1350)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~ 892 (1350)
..++.++..++..+++.++..++|.++|+++++.|++||++ +++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999985 7899999999999999998765 46777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhH---HHHHHHHHH
Q 000689 893 ACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSE---LMIVGLFSS 969 (1350)
Q Consensus 893 ~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---~~~~~~~~~ 969 (1350)
+++++++++|++++++++++|+.++..+...+..+...++.++...+..+++.|.++|+++++ ++.+ +.+.++|.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999999999998887766666666666667777888889999999999999995 4433 456777777
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 970 NLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGG 1049 (1350)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1350)
..+...+...+..........+......+..++.++++..+ +..+.+....+.........++..+......+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665554444333333222222222222233333333322 112222222222333334567888888889999999
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHH
Q 000689 1050 RAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIA 1129 (1350)
Q Consensus 1050 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~ 1129 (1350)
.+.+|+.++++.+++.+.. ...+. +..+.|+|+||+|+||++ .++|+|+||+|+|||++||||+||||||||++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~--~~~~~--~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFP--RPQAF--PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHhccccccccc--ccccc--CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999987544322111 11111 123579999999999743 36999999999999999999999999999999
Q ss_pred HHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCC
Q 000689 1130 LVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPD 1209 (1350)
Q Consensus 1130 lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~ 1209 (1350)
+|+|+|+|++|+|++||+|+++++.+++|++++||||||.+|++|+++| + ++.++++++++++.+++.+++.. |+
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~ 442 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-ED 442 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cc
Confidence 9999999999999999999999999999999999999999999999999 2 45788888888888888776653 44
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcC
Q 000689 1210 GYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAH 1287 (1350)
Q Consensus 1210 Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~D 1287 (1350)
|. .+|.+||||||||++||||++++|+|||||||||+||+++|+.+.+.+.+.. .|+|+|+||||++++..||
T Consensus 443 ~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 443 GR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred cC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 42 1478999999999999999999999999999999999999999999997654 4899999999999999999
Q ss_pred EEEEEeCCeEEEe-cChhHH
Q 000689 1288 VIAVIDDGKVAEL-GSHSHL 1306 (1350)
Q Consensus 1288 rI~Vl~~GrIvE~-Gt~~eL 1306 (1350)
+|++|++|+++|. |++.+-
T Consensus 518 ~i~~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 518 RLLEMRNGQLSELTGEERDA 537 (547)
T ss_pred EEEEEECCEEEEecCCchhh
Confidence 9999999999987 555443
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=637.77 Aligned_cols=531 Identities=15% Similarity=0.108 Sum_probs=441.0
Q ss_pred hHHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 88 GLGELFRFADSLDY----VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWAS 163 (1350)
Q Consensus 88 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1350)
.++++++|+.|+++ ..+++.+++.++...+....|++.+.++|.+... +...+...+..++++++++.++..+.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~--~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR--SPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667888877653 2556667777777788888899999999986532 12223322333444444455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 164 SWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVG 243 (1350)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1350)
.++..++......++..++|.++|++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.+++.++++
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888899999999999999999999999985 68999999999999999999999999999999999888877
Q ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000689 244 FS-AVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQR 322 (1350)
Q Consensus 244 ~~-~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~ 322 (1350)
+. ++|.+++++++.+|+.+++..++.+++.+...+.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----cccCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 000689 323 LGYKSGFAKGMGLGATYFVVFC--SYALLLWYGGYLVR-H----HFTNGGLAIA-TMFA---VMIGGLALAQAAPSISAF 391 (1350)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----g~~~~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~ 391 (1350)
...+.....+...++..++... ..+++++.|...+. . |.+|.|.+++ ++.+ +.....|+..+...+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888887776542 33333344443332 2 6889888776 3333 334467889999999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCCC-------CC--CC-------------ccCCCCcceEEEEEEEEECCCCCCCccccce
Q 000689 392 AKAKVAAAKIFRIIDHKPSIDRN-------SE--SG-------------LELDSVSGLIELKHVDFSYPSRPEVRILNNF 449 (1350)
Q Consensus 392 ~~~~~s~~ri~~~l~~~~~~~~~-------~~--~~-------------~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i 449 (1350)
+++.++.+|++++++.+++++.. +. +. .......+.|+++||+|+|+++ .++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 99999999999999764332100 00 00 0011234679999999999742 3699999
Q ss_pred EEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCC-
Q 000689 450 SLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGR- 528 (1350)
Q Consensus 450 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~- 528 (1350)
||++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 56899999999999999999999974
Q ss_pred ------CCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHH
Q 000689 529 ------PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602 (1350)
Q Consensus 529 ------~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~ 602 (1350)
+..++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 33567788999999999999887 999999876 5779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 000689 603 KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQ 639 (1350)
Q Consensus 603 ~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 639 (1350)
+.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999774 8999999999999999999999973
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=637.09 Aligned_cols=200 Identities=25% Similarity=0.338 Sum_probs=165.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 36999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--ccCc-ccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1162 AIVPQEP--CLFA-STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1162 ~~VpQdp--~LF~-gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
+|++|++ .++. .|+.+++....+...++++.+.++..++... .+......||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 3433 4788887422222234455555555554210 1222345799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEE-EecChhHHh
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA-ELGSHSHLL 1307 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv-E~Gt~~eLl 1307 (1350)
+|+||||||||++||+.+...+.+.|++. .| |||+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999986 44 99999999999976 9999999999998 678888774
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=661.90 Aligned_cols=213 Identities=23% Similarity=0.361 Sum_probs=177.4
Q ss_pred cEEEEEEEEECCCC----------CCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC--CccEEEECCccC
Q 000689 1082 EVELKHVDFSYPSR----------PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP--SSGRVMIDGKDI 1149 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~iDG~di 1149 (1350)
.+.|+||++.++.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998532 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHhhcccEEEccCCccCc-ccHHHHhccCC----C-CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCC
Q 000689 1150 RKYNLKSLRRHMAIVPQEPCLFA-STIYENIAYGH----E-SATESE----IIEAARLANADKFISSLPDGYKTFVGERG 1219 (1350)
Q Consensus 1150 ~~~~l~~lR~~i~~VpQdp~LF~-gTIreNL~~~~----~-~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G 1219 (1350)
.. ..+|+.+|||+|++.++. .|++|||.+.. + +.++++ +.+.++..++.+ -.|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence 43 456788999999998775 59999998642 1 233332 455566666544 3467777544
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh-h-hhcCEEEEEeC-
Q 000689 1220 -VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLST-I-RNAHVIAVIDD- 1294 (1350)
Q Consensus 1220 -~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlst-i-~~~DrI~Vl~~- 1294 (1350)
..||||||||++|||+|+.+|+||+||||||+||+.+...|.+.|++.. +|+|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999875 58999999999984 4 56999999996
Q ss_pred CeEEEecChh
Q 000689 1295 GKVAELGSHS 1304 (1350)
Q Consensus 1295 GrIvE~Gt~~ 1304 (1350)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=621.72 Aligned_cols=200 Identities=26% Similarity=0.445 Sum_probs=163.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 36999999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEccCC-ccCc-ccHHHHhccCCCCC--C--HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1162 AIVPQEP-CLFA-STIYENIAYGHESA--T--ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1162 ~~VpQdp-~LF~-gTIreNL~~~~~~~--t--d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++.. +..+.+ ...||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~----~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTP----VKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhCh----hhhCCHHHHHHHHHHHH
Confidence 9999986 4554 49999998653321 1 233344444433311 112333 35699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe-CCeEEEe-cChhHHh
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID-DGKVAEL-GSHSHLL 1307 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~-~GrIvE~-Gt~~eLl 1307 (1350)
++.+|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|+|+++ |++++-+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999875 4599999999999865 99999998 8999874 6666654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=622.74 Aligned_cols=200 Identities=26% Similarity=0.392 Sum_probs=165.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999632 3599999999999999999999999999999999999999999999975 3579
Q ss_pred EEEccCCccCcccHHHHhcc----CCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1162 AIVPQEPCLFASTIYENIAY----GHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1162 ~~VpQdp~LF~gTIreNL~~----~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 22345555321 11234567777778777775321 12234679999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEE-EecChhHHh
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA-ELGSHSHLL 1307 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv-E~Gt~~eLl 1307 (1350)
.+|++|||||||++||+.+...+.+.|++. ++ |+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999875 44 99999999999976 9999999999998 578877653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=579.17 Aligned_cols=452 Identities=28% Similarity=0.442 Sum_probs=355.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH-HHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR-WLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 505 (1350)
.++++|++++|++ .++|+|+||++.+||++||+|.||||||||+|+|+|.|+|++|+|.+||++....++. .....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 5899999999974 4699999999999999999999999999999999999999999999999999877765 56678
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCC------HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDAD------LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~------~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
|+.|+||..|++. ||.|||.+|+.... ..++.+.+ .+.+..+ |.+........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999966 99999999986432 23333332 2334434 332224455568999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh-HHHHhcc
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH-DELIAKG 655 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~-~~l~~~~ 655 (1350)
||+..+++|||||||||+|+....+.+.+.+++++ +|.++|+||||++.+.. ||||.||.||+.+..++. .++-.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-- 235 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-- 235 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH--
Confidence 99999999999999999999999999999999986 69999999999999976 999999999999865431 10000
Q ss_pred CCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhh
Q 000689 656 ENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEK 735 (1350)
Q Consensus 656 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1350)
+ +
T Consensus 236 ---------------------------------------------------------------------------~--~- 237 (500)
T COG1129 236 ---------------------------------------------------------------------------D--E- 237 (500)
T ss_pred ---------------------------------------------------------------------------H--H-
Confidence 0 0
Q ss_pred hhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 000689 736 LAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELL 815 (1350)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 815 (1350)
++...
T Consensus 238 -----------------------------------------------lv~~M---------------------------- 242 (500)
T COG1129 238 -----------------------------------------------LVRLM---------------------------- 242 (500)
T ss_pred -----------------------------------------------HHHHh----------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 816 FNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACT 895 (1350)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~ 895 (1350)
.|+
T Consensus 243 ------------------------------------------vGr----------------------------------- 245 (500)
T COG1129 243 ------------------------------------------VGR----------------------------------- 245 (500)
T ss_pred ------------------------------------------hCc-----------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000689 896 AGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPL 975 (1350)
Q Consensus 896 ~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~ 975 (1350)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 976 RRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSV 1055 (1350)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v 1055 (1350)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccC
Q 000689 1056 FDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
++-+..++ .+ ... ...-.++++|++.. ..++|+||++++||++||.|--|||+|-++++|+|..
T Consensus 246 -~~~~~~~~-~~--~~~-----~~~~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~ 309 (500)
T COG1129 246 -ELEDLFPE-PP--EEG-----IGEPVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR 309 (500)
T ss_pred -chhhhccc-cc--ccC-----CCCcEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC
Confidence 00000000 00 000 00113667776532 1589999999999999999999999999999999998
Q ss_pred CCCccEEEECCccCCCCCH-HHhhcccEEEccCC----ccCcccHHHHhccCC-CCCCHH-HHHHHHHHhccHHHHhcCC
Q 000689 1136 EPSSGRVMIDGKDIRKYNL-KSLRRHMAIVPQEP----CLFASTIYENIAYGH-ESATES-EIIEAARLANADKFISSLP 1208 (1350)
Q Consensus 1136 ~p~~G~I~iDG~di~~~~l-~~lR~~i~~VpQdp----~LF~gTIreNL~~~~-~~~td~-ei~~al~~a~l~~~I~~lp 1208 (1350)
++.+|+|.+||.++.--++ +..+..|+|||-|- .+...||++|+.+.. ...... -+..+.+.+.+.+++.+|.
T Consensus 310 ~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~ 389 (500)
T COG1129 310 PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR 389 (500)
T ss_pred cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC
Confidence 8999999999998876664 57888999999876 345679999998762 111111 2445566666777887763
Q ss_pred ---CCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh
Q 000689 1209 ---DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR 1284 (1350)
Q Consensus 1209 ---~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~ 1284 (1350)
...+.++ .+||||.+|+++|||+|..+|+||||||||.++|--+...|.+.|+++. +|++||+||-.+.++.
T Consensus 390 Ik~~s~~~~v----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll 465 (500)
T COG1129 390 IKTPSPEQPI----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELL 465 (500)
T ss_pred cccCCccchh----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 2333444 4699999999999999999999999999999999999999999999876 6999999999999987
Q ss_pred -hcCEEEEEeCCeEEEe
Q 000689 1285 -NAHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1285 -~~DrI~Vl~~GrIvE~ 1300 (1350)
.||||+||.+|||+..
T Consensus 466 ~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 466 GLSDRILVMREGRIVGE 482 (500)
T ss_pred hhCCEEEEEECCEEEEE
Confidence 5999999999999873
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=602.35 Aligned_cols=532 Identities=16% Similarity=0.146 Sum_probs=435.9
Q ss_pred HHHHHHHHhcchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 743 SSFWRLAKMNSPEWV-----YALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFN 817 (1350)
Q Consensus 743 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 817 (1350)
..+++++++..|+|. .+++.+++.++...+....+++.+.+++.....+...+......|+++++++.++..+..
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~ 156 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIK 156 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777665 566666777777778888888888888876644433233333445555666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 818 TLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAG 897 (1350)
Q Consensus 818 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~ 897 (1350)
++..++......++...+|++.|++....++.|||. ++|++.+|+++|++.+...+...+..++..++.++++++.+
T Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999999988889999984 67999999999999999999999999999999998888877
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000689 898 FV-LQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLR 976 (1350)
Q Consensus 898 ~~-~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~ 976 (1350)
+. .+|.+++++++.+|+.++...+..+.+.+..++.++..+.....+.|.++|+++|++|+.++...++|.+..++..+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999998888888888888888889999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHH-Hc----CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000689 977 RCFWKGQIAGSGYGVAQFCLYA--SYALGLWYSSWLV-KH----GISDFSKTIRVFMV----LMVSANGAAETLTLAPDF 1045 (1350)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~----g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 1045 (1350)
...+...+.+....+..++... ...+.++.|...+ .. |.++.+..+..+.. +.....++..+.....++
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777766666666542 2223333334233 22 67888876664333 334467788888889999
Q ss_pred HHHHHHHHHHHHHhcccccCCC------CCCC---C------------CCCCCCCCCcEEEEEEEEECCCCCCCCcccce
Q 000689 1046 IKGGRAMRSVFDLLDRKTEIEP------DDPD---A------------TPVPDRLRGEVELKHVDFSYPSRPDIPIFRDL 1104 (1350)
Q Consensus 1046 ~~~~~a~~~v~~~~~~~~~~~~------~~~~---~------------~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~v 1104 (1350)
.++..+.+|+.++++.+++.+. .... . ........+.|+++||+|+||++ .++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 9999999999999976443210 0000 0 00001134679999999999743 3699999
Q ss_pred eEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCC-
Q 000689 1105 SLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH- 1183 (1350)
Q Consensus 1105 sl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~- 1183 (1350)
||+|++||++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 67899999999999999999999864
Q ss_pred ------CCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 000689 1184 ------ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257 (1350)
Q Consensus 1184 ------~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te 1257 (1350)
++.++++++++++.+++++++.. |.||||..+ .+.+||||||||++||||++++|++||||||||+||++++
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~ 618 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVE 618 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 34678899999999999999988 999999986 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 000689 1258 RSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDD 1294 (1350)
Q Consensus 1258 ~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~ 1294 (1350)
+.+++.+++. |+|+|+||||++++..||+|++|++
T Consensus 619 ~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 619 GYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999873 8999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=607.72 Aligned_cols=193 Identities=24% Similarity=0.332 Sum_probs=163.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCcc-CcccHHHHhccCCCCCC-HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1162 AIVPQEPCL-FASTIYENIAYGHESAT-ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1162 ~~VpQdp~L-F~gTIreNL~~~~~~~t-d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
+|+||++.+ +..|++||+.++..... +..+.++++..++.+... ....+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999987532222 234456666666654432 33457999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecCh
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|+||||||||++||+++...+.+.|+++.+ |+|+|+|+|++..+.. ||||++|++ ++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 999999999999999999999999998753 7899999999999865 999999965 88877763
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=572.68 Aligned_cols=485 Identities=29% Similarity=0.422 Sum_probs=347.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ +++|+|+||++.+|+++||||+||||||||+++|.|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 5899999999964 46999999999999999999999999999999999999999999998762 169
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCC--HHHHHHHHH-------------------------HhchHHHHhcCCCCccc
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDAD--LNEIEEAAR-------------------------VANAYSFIIKLPDGFDT 558 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~--~~~~~~~~~-------------------------~~~~~~~i~~lp~g~~t 558 (1350)
||++|++.+.+. ||.+.+..+..... ..+++.+.. .+.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999865 99999988754211 011111100 02223334444 4443
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEE
Q 000689 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVL 637 (1350)
Q Consensus 559 ~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl 637 (1350)
. .....+||||||-|++|||||+.+|+||||||||++||.++..++.+.|.+. +| |+|+||||..++.+ |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 4556789999999999999999999999999999999999999999999865 46 99999999999987 9999999
Q ss_pred eCCEEEEecChHHHHhccCCcHHHHHHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCcc
Q 000689 638 QQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFST 717 (1350)
Q Consensus 638 ~~G~i~~~g~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1350)
+.|++... .|.|..+++......+.....
T Consensus 224 d~g~l~~y-----------~Gny~~~~~~r~~~~~~~~~~---------------------------------------- 252 (530)
T COG0488 224 DRGKLTPY-----------KGNYSSYLEQKAERLRQEAAA---------------------------------------- 252 (530)
T ss_pred cCCceeEe-----------cCCHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 99987654 244544443322211110000
Q ss_pred CcccccccCCCCchhhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Q 000689 718 SDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIR 797 (1350)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1350)
.. + ......+.
T Consensus 253 -------------~~------~-~~~~~~~~------------------------------------------------- 263 (530)
T COG0488 253 -------------YE------K-QQKELAKE------------------------------------------------- 263 (530)
T ss_pred -------------HH------H-HHHHHHHH-------------------------------------------------
Confidence 00 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHH
Q 000689 798 EIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIG 877 (1350)
Q Consensus 798 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~ 877 (1350)
T Consensus 264 -------------------------------------------------------------------------------- 263 (530)
T COG0488 264 -------------------------------------------------------------------------------- 263 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHh
Q 000689 878 DRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAF 957 (1350)
Q Consensus 878 ~~l~~~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 957 (1350)
T Consensus 264 -------------------------------------------------------------------------------- 263 (530)
T COG0488 264 -------------------------------------------------------------------------------- 263 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000689 958 NSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAE 1037 (1350)
Q Consensus 958 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1350)
..|.+++........+.
T Consensus 264 ---~~~i~r~~~~~~~~k~a------------------------------------------------------------ 280 (530)
T COG0488 264 ---QEWIRRGKAAASKAKKA------------------------------------------------------------ 280 (530)
T ss_pred ---HHHHHHHHhccchHHHH------------------------------------------------------------
Confidence 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhcccccCCCCCCC--CCCCCC--CCCCcEEEEEEEEECCCCCCCCcccceeEEEeCC
Q 000689 1038 TLTLAPDFIKGGRAMRSVFD--LLDRKTEIEPDDPD--ATPVPD--RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAG 1111 (1350)
Q Consensus 1038 ~~~~~~~~~~~~~a~~~v~~--~~~~~~~~~~~~~~--~~~~~~--~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~G 1111 (1350)
.......+++.+ ....+... ..+. ..+++. ..+--++++|+++.|+.. .++++++||.|.+|
T Consensus 281 --------~sr~k~l~k~~~~~~~~~~~~~--~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g 348 (530)
T COG0488 281 --------KSRIKRLEKLEARLAEERPVEE--GKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRG 348 (530)
T ss_pred --------HHHHHHHHHHHhhhhhcccccc--cccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCC
Confidence 000000011110 00011100 0000 001111 123359999999999643 47999999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCC-ccC-cccHHHHhccCCCCCCHH
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP-CLF-ASTIYENIAYGHESATES 1189 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp-~LF-~gTIreNL~~~~~~~td~ 1189 (1350)
++||||||||+|||||+++|.|-..|.+|+|.+.-. -++||.+|+- .++ +.|+-|++.-..++..+.
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~ 417 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQ 417 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHH
Confidence 999999999999999999999999999999998632 2689999998 444 348999998776655577
Q ss_pred HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC
Q 000689 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS 1269 (1350)
Q Consensus 1190 ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~ 1269 (1350)
++...|...+...- ...++| ..||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.+..
T Consensus 418 ~~r~~L~~f~F~~~------~~~~~v----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~- 486 (530)
T COG0488 418 EVRAYLGRFGFTGE------DQEKPV----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE- 486 (530)
T ss_pred HHHHHHHHcCCChH------HHhCch----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-
Confidence 88888877765432 223344 4699999999999999999999999999999999999999999998754
Q ss_pred CceEEEEecCchhhhh-cCEEEEEeCCeEEEe-cChhHHhhc
Q 000689 1270 GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL-GSHSHLLKN 1309 (1350)
Q Consensus 1270 g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~-Gt~~eLl~~ 1309 (1350)
| |||+|||+...+.. |++|+++++ ++.++ |++++..+.
T Consensus 487 G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 487 G-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred C-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 4 99999999999987 999999999 88887 888887654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-60 Score=537.77 Aligned_cols=462 Identities=26% Similarity=0.446 Sum_probs=360.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH-HHHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL-RWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 505 (1350)
.+++++++++|| ...+++||||+|++||+.||.|+||+|||||+++|.|+|+|++|+|++||++++--++ +.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3469999999999999999999999999999999999999999999999999986554 568889
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
||+|+|++.|++. |+.|||.+|.+......+........+.+...++ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999976 9999999998642111111111112223334444 666667777889999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcHHHH
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~ 662 (1350)
|+|||||||||-|-|...+.+.+.++++. .|+|||+|||++..++. |||+-||.+||++..-.+ . +
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~--~-------- 226 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V--A-------- 226 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C--C--------
Confidence 99999999999999999999999999885 59999999999999987 999999999998643210 0 0
Q ss_pred HHHHHHHhhHhhhhhcccCCCCCCcccCCCCCcccccCCCCCCCCccccccCCccCcccccccCCCCchhhhhhhhhhhh
Q 000689 663 LIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQA 742 (1350)
Q Consensus 663 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1350)
+. .. +.
T Consensus 227 ---------------------~~--------------------------------------------t~--~e------- 232 (501)
T COG3845 227 ---------------------ET--------------------------------------------TE--EE------- 232 (501)
T ss_pred ---------------------CC--------------------------------------------CH--HH-------
Confidence 00 00 00
Q ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 743 SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHS 822 (1350)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 822 (1350)
+..
T Consensus 233 -----la~------------------------------------------------------------------------ 235 (501)
T COG3845 233 -----LAE------------------------------------------------------------------------ 235 (501)
T ss_pred -----HHH------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQW 902 (1350)
Q Consensus 823 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 902 (1350)
.|+
T Consensus 236 ---------------lMv-------------------------------------------------------------- 238 (501)
T COG3845 236 ---------------LMV-------------------------------------------------------------- 238 (501)
T ss_pred ---------------Hhc--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 903 RLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKG 982 (1350)
Q Consensus 903 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 982 (1350)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000689 983 QIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRK 1062 (1350)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~ 1062 (1350)
-..+ ..+
T Consensus 239 ------------------------------G~~v-------------------------------------------~~~ 245 (501)
T COG3845 239 ------------------------------GREV-------------------------------------------VLR 245 (501)
T ss_pred ------------------------------CCcc-------------------------------------------ccc
Confidence 0000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEE
Q 000689 1063 TEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142 (1350)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1142 (1350)
.+..+ .. +..--++++|++..=+ + +.+.+++|||+|++||++||.|-.|-|-+.|+.+|.|+..|.+|+|
T Consensus 246 ~~~~~------~~--pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I 315 (501)
T COG3845 246 VVKPP------ST--PGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI 315 (501)
T ss_pred cccCC------CC--CCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE
Confidence 00000 00 0112488999987543 2 2468999999999999999999999999999999999999999999
Q ss_pred EECCccC-CCCCHHHhhc-ccEEEccCCc----cCcccHHHHhccCCCC---------CCHHHHHHHHHHhccHHHHhcC
Q 000689 1143 MIDGKDI-RKYNLKSLRR-HMAIVPQEPC----LFASTIYENIAYGHES---------ATESEIIEAARLANADKFISSL 1207 (1350)
Q Consensus 1143 ~iDG~di-~~~~l~~lR~-~i~~VpQdp~----LF~gTIreNL~~~~~~---------~td~ei~~al~~a~l~~~I~~l 1207 (1350)
+++|.|+ ...+...+|+ .++|||.|.+ ...-|+.||+.++..+ ....++... ..+.++.+
T Consensus 316 ~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~-----a~~li~~f 390 (501)
T COG3845 316 LLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKF-----ARELIEEF 390 (501)
T ss_pred EECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHH-----HHHHHHHc
Confidence 9999997 6777777665 5999999984 5677999999866432 112333222 23344432
Q ss_pred ---CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhh
Q 000689 1208 ---PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTI 1283 (1350)
Q Consensus 1208 ---p~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti 1283 (1350)
+.+.++++ .+||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+|+.+
T Consensus 391 dVr~~~~~~~a----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEi 466 (501)
T COG3845 391 DVRAPSPDAPA----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEI 466 (501)
T ss_pred CccCCCCCcch----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHH
Confidence 33444444 4799999999999999999999999999999999999999999998865 699999999999998
Q ss_pred hh-cCEEEEEeCCeEEEecChhH
Q 000689 1284 RN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1284 ~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
.. ||||+||.+|+|+....+++
T Consensus 467 l~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 467 LELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHhhheeeeeeCCceeccccccc
Confidence 66 99999999999998877765
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=478.42 Aligned_cols=238 Identities=25% Similarity=0.444 Sum_probs=224.9
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
|.|+|+||+++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|+|||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1161 i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
|+||||+|.+|++|+++|+++..+ .++++++++++.+++++++.++|++|++.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986533 6788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHH
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~ 1320 (1350)
+||||||||++||+.+++.+++.|++.+.++|+|+||||++++..||||+||++|+|+|.|+|++|++. .+.|++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~ 235 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE--KSHFKQAIS 235 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC--cHHHHHHHh
Confidence 999999999999999999999999988889999999999999999999999999999999999999986 689999987
Q ss_pred Hhh
Q 000689 1321 LQR 1323 (1350)
Q Consensus 1321 ~q~ 1323 (1350)
...
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-52 Score=425.32 Aligned_cols=228 Identities=32% Similarity=0.537 Sum_probs=198.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC-CCCHHHHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK-SLKLRWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 505 (1350)
+|+++||+++|++ ..||+|||++|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999973 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+|+|||+..||+- |+.|||.++.- ..+.++.+ +. +.+.+.++ |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~---~~--A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR---EK--ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHH---HH--HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999975 99999998732 12222222 22 23445555 787888888999999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcH
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGV 659 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 659 (1350)
+.+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..++.+..
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R 231 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSER 231 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHH
Confidence 99999999999999999999999999999986 59999999999999988 99999999999999999999998865544
Q ss_pred HHHHH
Q 000689 660 YAKLI 664 (1350)
Q Consensus 660 y~~l~ 664 (1350)
.+++.
T Consensus 232 ~~~FL 236 (240)
T COG1126 232 TRQFL 236 (240)
T ss_pred HHHHH
Confidence 44433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=430.52 Aligned_cols=234 Identities=39% Similarity=0.602 Sum_probs=201.8
Q ss_pred eEEEEEEEEECCCC--CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH---HH
Q 000689 427 LIELKHVDFSYPSR--PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL---RW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~---~~ 501 (1350)
+|++++|++.|+.. ....+|+||||+|++||+.||||+||+|||||++++.++-.|++|+|.+||+|+..++. ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 12468999999999999999999999999999999999999999999999999988765 45
Q ss_pred HhccEEEEccCCCccc-ccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 502 LRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+|++||++||++.|++ .||++||+|...-+...+-+...+...+.+++ |+....+..+.+|||||||||+||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIARA 155 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARA 155 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHHH
Confidence 6789999999999997 69999999976533221222223334444444 77777888899999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCC
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGEN 657 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~ 657 (1350)
|+.+|+|||.|||||||||+|.+.|.+.|+++. .|-|+++|||-++.++. |||+.||++|+++|+|+-.++..++++
T Consensus 156 La~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 156 LANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 999999999999999999999999999998874 48999999999999988 999999999999999999999988766
Q ss_pred cHHHHHHH
Q 000689 658 GVYAKLIR 665 (1350)
Q Consensus 658 ~~y~~l~~ 665 (1350)
..-++++.
T Consensus 236 ~~t~~fi~ 243 (339)
T COG1135 236 AITQEFIG 243 (339)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=407.24 Aligned_cols=214 Identities=33% Similarity=0.557 Sum_probs=191.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCC-CCCHHHhhcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR-KYNLKSLRRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~-~~~l~~lR~~ 1160 (1350)
-|+++||+.+|.. ..||+|||++|++||+|+|+||||||||||+++|.++-+|++|+|.+||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999999999998763 3389999999
Q ss_pred cEEEccCCccCcc-cHHHHhccCCC---CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHE---SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~---~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+|+|+|+..||+- |+.||+.++.- ..+.+ .-.+.++++++.+.....| .+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 9999999999965 99999987631 12222 3455677888888777666 5799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||||.-+|+++++|||||||||+.-..|.+.++++. .|.|+|+|||.+...++ ||||+.||+|+|+|+|+|+++..+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999999976 68999999999999988 999999999999999999999987
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=411.36 Aligned_cols=228 Identities=35% Similarity=0.568 Sum_probs=196.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||+++++++...||++|
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 5899999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccc--hhcCCCCCCChHHHHHHHHHHHh
Q 000689 507 GLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDT--QVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGqkqri~iARal 581 (1350)
|||-|..-||+. ||.|||++-.. ..+.+++.+- +.+.+..+ |++. ...+.+.+|||||+|||.+||||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 999999999965 99999987532 2233333221 23333333 5553 45677899999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhccCCc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAKGENG 658 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 658 (1350)
+.+|+||++|||++||||.+++.+|+.+.++.+ ++|+|+|||+++..- -+|||.+|++|+|+..+++++++.++.+.
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 999999999999999999999999999988854 899999999999875 59999999999999999999999987555
Q ss_pred HHHHHH
Q 000689 659 VYAKLI 664 (1350)
Q Consensus 659 ~y~~l~ 664 (1350)
.-..++
T Consensus 231 FV~~f~ 236 (309)
T COG1125 231 FVEDFF 236 (309)
T ss_pred HHHHHh
Confidence 444444
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=438.60 Aligned_cols=238 Identities=26% Similarity=0.433 Sum_probs=220.5
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
|.|+++|++|+|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.+||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999642 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
|+||||+|.+|++|+++|+.+..+ .++++++++++.+++.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999964332 4678899999999999999999999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~ 665 (1350)
+||||||||++||+.+.+.+++.|++..+++|+|+||||++++..||+|++|++|++++.|++++|++. .+.|++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~--~~~~~~~~~ 235 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE--KSHFKQAIS 235 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC--cHHHHHHHh
Confidence 999999999999999999999999988779999999999999988999999999999999999999986 577888776
Q ss_pred HHH
Q 000689 666 MQE 668 (1350)
Q Consensus 666 ~~~ 668 (1350)
...
T Consensus 236 ~~~ 238 (275)
T cd03289 236 PSD 238 (275)
T ss_pred hcc
Confidence 543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=396.97 Aligned_cols=220 Identities=31% Similarity=0.521 Sum_probs=198.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----cEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS-----GQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~i~g~~~~~--~~~ 499 (1350)
.++++|+++.|++ +.+|+|||++|++++++|++||||||||||++++.|+.+..+ |+|.++|+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999973 469999999999999999999999999999999999999876 999999999975 578
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDA------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
-.+|++||+|+|.|.-|+.||+|||+||..-. -++-++++++.|.+++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 89999999999999999999999999994311 12346778888888887643 456778899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
|+||||||.-+|+|||||||||||||.+..+|.+.|.++.++-|+|+|||.+....+ +|+...+..|+++|.|+.+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999998866 9999999999999999999998
Q ss_pred hccC
Q 000689 653 AKGE 656 (1350)
Q Consensus 653 ~~~~ 656 (1350)
.++.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=447.28 Aligned_cols=224 Identities=29% Similarity=0.494 Sum_probs=199.6
Q ss_pred CCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCC--
Q 000689 1078 RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIR-- 1150 (1350)
Q Consensus 1078 ~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~-- 1150 (1350)
+..+.|+|+||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 455789999999999743 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCCHHHhhcccEEEccCCccCcccHHHHhccCCC--CCCHHHHH-----HHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1151 KYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SATESEII-----EAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1151 ~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~td~ei~-----~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
..++..+|++++||||+|.+|++|++|||.++.. ..++++.+ ++++.+++ ++++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCC
Confidence 4566789999999999999999999999997532 24555543 34455544 4466788999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecC
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt 1302 (1350)
||||||+|||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.+ ||||+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998889999999999999988 99999999999999999
Q ss_pred hhHHhhc
Q 000689 1303 HSHLLKN 1309 (1350)
Q Consensus 1303 ~~eLl~~ 1309 (1350)
|++++..
T Consensus 308 ~~~l~~~ 314 (329)
T PRK14257 308 TKTIFIH 314 (329)
T ss_pred HHHHhcC
Confidence 9999876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=417.86 Aligned_cols=216 Identities=34% Similarity=0.582 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCC--CCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHh
Q 000689 1083 VELKHVDFSYPSR--PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSL 1157 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~---l~~l 1157 (1350)
|+|++|++.|+.. +..++|+||||+|++||+.||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999863 2346999999999999999999999999999999999999999999999998887775 5567
Q ss_pred hcccEEEccCCccCc-ccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1158 RRHMAIVPQEPCLFA-STIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~-gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
|++||+|+|++-|++ .|+.+|++|... ..+.+| +.+.++.+|+.|+-.+- ..+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 789999999999997 799999998743 233444 45666777776665554 478999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -|-|+++|||.++.+++ |||++||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998754 48999999999999988 9999999999999999999999
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 87
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=430.25 Aligned_cols=194 Identities=26% Similarity=0.377 Sum_probs=162.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|.|+||+|+|++++ .++++++|-|.++++||+|||||+|||||++++.+...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 499999999998654 69999999999999999999999999999999999999999988764322 23
Q ss_pred EEEccC---CccCcccHHHHhccCCCC-CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1162 AIVPQE---PCLFASTIYENIAYGHES-ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1162 ~~VpQd---p~LF~gTIreNL~~~~~~-~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
++--|. -..++-|.-|++....++ -..+++...+...|+...... .++ .+||+|||.|+++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~------~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQV------VPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccc------cch----hhcccccchhHHHHHHHh
Confidence 333333 335677888888765554 456778888899988743333 233 479999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEe
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~ 1300 (1350)
+.|.||||||||++||.+|-..+.++|.++-. +||+|+|+...|.. +++|.+.+||.+...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G--gvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFPG--GVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccCC--ceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999987644 89999999999977 999999999988753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=386.88 Aligned_cols=218 Identities=31% Similarity=0.537 Sum_probs=198.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCc-----cEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS-----GRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~-----G~I~iDG~di~~--~~l 1154 (1350)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+... |+|.+||.||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3469999999999999999999999999999999999999875 999999999966 578
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
..||+++|+|+|.|--|..||+||++||.. ..-|+-++.+++.|.+||-+.. . +.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---r----L~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---R----LHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---H----hhCCccCCChhHHH
Confidence 999999999999999999999999999842 1224457889999999998754 2 34567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
||||||||.-+|+|||||||||||||.+-..|.+.|.++.++-|+|+|||.+.-... +|+...+-.|+++|+|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999998755 8999999999999999999998
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 76
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=431.92 Aligned_cols=225 Identities=28% Similarity=0.496 Sum_probs=196.5
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS-- 496 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~-- 496 (1350)
..+.|+++|++|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 45689999999999642 3469999999999999999999999999999999999997 579999999999973
Q ss_pred CCHHHHhccEEEEccCCCcccccHHHHhhcCCC--CCCHHHH-----HHHHHHhchHHHHhcCCCCccchhcCCCCCCCh
Q 000689 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRP--DADLNEI-----EEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569 (1350)
Q Consensus 497 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~~-----~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 569 (1350)
.+...+|+.++||||+|++|++|++|||.|+.. ..++++. .++++.++ |++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 455678999999999999999999999998742 1233332 22333333 445667889999999999
Q ss_pred HHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 570 Gqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 648 (1350)
||||||+|||||+++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||+++++.. ||+|+||++|+|++.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998888999999999999987 999999999999999999
Q ss_pred HHHHhccC
Q 000689 649 DELIAKGE 656 (1350)
Q Consensus 649 ~~l~~~~~ 656 (1350)
+++...+.
T Consensus 309 ~~l~~~~~ 316 (329)
T PRK14257 309 KTIFIHPK 316 (329)
T ss_pred HHHhcCCC
Confidence 99987643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-46 Score=414.76 Aligned_cols=236 Identities=46% Similarity=0.794 Sum_probs=218.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|+.. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999643 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|+||++.+|..|++|||.++....+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986554556677888888999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
|||||||++||+.+...+.+.|++..+|+|+|++||+++.+..||+|++|++|++++.|++++++.+ .+.|.+++++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~~~ 236 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQL 236 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc--cChHHHHHhc
Confidence 9999999999999999999999998779999999999999988999999999999999999999977 6888887753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=383.62 Aligned_cols=472 Identities=19% Similarity=0.237 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIH 231 (1350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 231 (1350)
+++++..+.++.+.+........|+++..++|.++.++++..|+.-+++- +++.++.++++|+..|. +-...++.+.+
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHH
Confidence 33333344445556666667788999999999999999999999999998 99999999999999998 44456778899
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH--
Q 000689 232 YLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKA-- 309 (1350)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~~i~~vk~f~~e~~~-- 309 (1350)
..+.++++.+.+.|+++++.++.++++.+.++...+...+..+.....++..+++.+..+-.+.|-+..+....-.+.
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 999999999999999999999888888888888888888888889999999999999999999999998876433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 310 LQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSIS 389 (1350)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 389 (1350)
.+.|....+.+.+...+..........+.+++.+....+++|+.... +--+.....++...+++...|+.+....++
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 12222222222221111212211223344444455555555544332 212222334445556667779999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcH
Q 000689 390 AFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGK 469 (1350)
Q Consensus 390 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGK 469 (1350)
.+..|.+|++||.++-..++..+ ... ....+..+ .|+++||.|+|+.. .--+..||++|++||+|-|+|.|||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~-~~~-~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKAD-FPR-PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCcccc-CCC-CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcH
Confidence 99999999999998754333211 111 11222233 59999999999743 246889999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCC-CCHHHHHHHHHHhchHHH
Q 000689 470 STVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPD-ADLNEIEEAARVANAYSF 548 (1350)
Q Consensus 470 STl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~ 548 (1350)
||++++|.|+|.|++|+|++||.++..-+++++|+-++-|+-|.+||+.++ |... ++.+.+..-.+.-.+..-
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~k 436 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHK 436 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999998754 3222 455555443333222221
Q ss_pred HhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch
Q 000689 549 IIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLS 626 (1350)
Q Consensus 549 i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~ 626 (1350)
. ++-+|-- ....||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+--.. .|||++.||||-.
T Consensus 437 t-sl~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 437 T-SLNDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred h-cccCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence 1 1111111 124699999999999999999999999999999999999998887765443 5999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEe
Q 000689 627 TIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 627 ~~~~~d~i~vl~~G~i~~~ 645 (1350)
....|||++.|++|+++|.
T Consensus 511 YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 511 YFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhhHHHHHHHhcCceeec
Confidence 9999999999999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=392.97 Aligned_cols=221 Identities=33% Similarity=0.555 Sum_probs=195.0
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhccH--HHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHE--SATE----SEIIEAARLANAD--KFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~--~~td----~ei~~al~~a~l~--~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
||-|.--||. .||.|||+.-.. .-+. +.+.+-++.++++ +|..+.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999996 599999985421 2233 3455666677775 3555555 67999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhh-hhcCEEEEEeCCeEEEecChhHHhhcC
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLLKNN 1310 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti-~~~DrI~Vl~~GrIvE~Gt~~eLl~~~ 1310 (1350)
|||..+|+||+||||.+||||.|...+|+-+.+..+ |+|+|+|||++++. +-+|||+||++|+|+.+|+|++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~- 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN- 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-
Confidence 999999999999999999999999999999988653 89999999999986 45999999999999999999999987
Q ss_pred CCchhHHH
Q 000689 1311 PDGCYARM 1318 (1350)
Q Consensus 1311 ~~g~y~~l 1318 (1350)
|...|-+-
T Consensus 227 Pan~FV~~ 234 (309)
T COG1125 227 PANDFVED 234 (309)
T ss_pred ccHHHHHH
Confidence 66655443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=415.67 Aligned_cols=241 Identities=32% Similarity=0.562 Sum_probs=223.2
Q ss_pred CCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhh
Q 000689 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1079 ~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR 1158 (1350)
..|.|+++|++++|+.. +.++|+|+||+|+|||.+||+|+||||||||+++|.|+++|++|+|++||.++...+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24699999999999999999999999999999999999999999999999999999888999
Q ss_pred cccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1159 RHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
++++|++|+|.+|++|+++|+.+... ..+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999986532 34667888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHH
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l 1318 (1350)
+|++|||||||++||++++..+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++++. .++.|+.+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHHH
Confidence 99999999999999999999999999987779999999999999989999999999999999999999876 47888888
Q ss_pred HHHh
Q 000689 1319 IQLQ 1322 (1350)
Q Consensus 1319 ~~~q 1322 (1350)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7653
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=407.51 Aligned_cols=235 Identities=50% Similarity=0.835 Sum_probs=214.6
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 246999999999999999999999999999999999999999999999999998888788889999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++++|+.|++||+.++.+....+++.++++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654455666777777888999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHHH
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~ 665 (1350)
|||||||++||+.+.+.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|++++++.+ .+.|..+++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc--cChHHHHHh
Confidence 9999999999999999999999998778999999999999988999999999999999999999876 577776553
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=382.07 Aligned_cols=228 Identities=35% Similarity=0.532 Sum_probs=194.1
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HH
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WL 502 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~ 502 (1350)
..|++++|+|+|++ +.||+|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999974 4699999999999999999999999999999999999999999999999999988754 57
Q ss_pred hccEEEEccCCCcccc-cHHHHhhcCCCC---CCHHHHHHHHHHhchHHHHhcCCCCccch-hcCCCCCCChHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRPD---ADLNEIEEAARVANAYSFIIKLPDGFDTQ-VRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGqkqri~i 577 (1350)
|+++|+++|...||+. ||+||+.|...+ .+++.+.+.+.. -++.. |+... ....+.+||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~-----KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM-----KLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHH-----HHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999976 999999996432 334444332211 12221 55555 344578999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||+..||+|+++|||||+|||.+...+.+.|+++.. |.|+|+|||+++++.. ||||+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988864 8999999999999977 899999999999999999999886
Q ss_pred cCCcHHHHHH
Q 000689 655 GENGVYAKLI 664 (1350)
Q Consensus 655 ~~~~~y~~l~ 664 (1350)
. +...++++
T Consensus 237 d-~P~v~qf~ 245 (263)
T COG1127 237 D-DPWVRQFF 245 (263)
T ss_pred C-CHHHHHHh
Confidence 2 44444443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=398.00 Aligned_cols=214 Identities=36% Similarity=0.566 Sum_probs=189.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.++++|++|+|++ +++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCc-ccccHHHHhhcCCCCC-------CH---HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHH
Q 000689 507 GLVSQEPAL-FATTIKENILLGRPDA-------DL---NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 507 ~~v~Q~~~l-f~~ti~eNi~~g~~~~-------~~---~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
|||||++.. |.-||+|-+.+|+... +. +.+.++.+..++.+ ...+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~-----------la~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-----------LADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----------HhcCcccccChhHHHHH
Confidence 999999754 5669999999996421 22 23445555554444 44555678999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEEEecChHHHH
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
.|||||+++|+||+||||||+||....-.+++.++++. +|+|+|+|.|+++.. +.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 489999999999986 569999999999999999999988
Q ss_pred hc
Q 000689 653 AK 654 (1350)
Q Consensus 653 ~~ 654 (1350)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=445.97 Aligned_cols=208 Identities=27% Similarity=0.401 Sum_probs=169.1
Q ss_pred CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCeeCCCCCHHHHhccEEEEccCCCcccc-
Q 000689 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT---SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT- 518 (1350)
Q Consensus 443 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 518 (1350)
..+|+|++.-++||+.+.+.||.|||||||++.|+|-.+-. .|+|.+||.+.++..+ ++.++|++|+..-|..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 46999999999999999999999999999999999987542 5799999999988766 7789999998877754
Q ss_pred cHHHHhhcCCC---C---CC-HHHHHHHHHHhchHHHHhcCCCCccchhcCCC-CCCChHHHHHHHHHHHhcCCCCEeEE
Q 000689 519 TIKENILLGRP---D---AD-LNEIEEAARVANAYSFIIKLPDGFDTQVRERG-VQLSGGQKQRIAIARAMLKNPAILLL 590 (1350)
Q Consensus 519 ti~eNi~~g~~---~---~~-~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g-~~LSgGqkqri~iARal~~~~~ilil 590 (1350)
||||-+.|... . .+ .++.+..+...+..--+-.|....||.||... ...|||||.||++|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999987522 0 11 11111111122222234467778899999875 56999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch--hhhhcCEEEEEeCCEEEEecChHHHHh
Q 000689 591 DEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLS--TIRKADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 591 DE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~--~~~~~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
||+|.+||+.|.-++.++|+++. .+.|.++.=|..+ +....|.|++|.+|+++.+|+.++.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999875 3778888777665 456699999999999999999998863
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=410.37 Aligned_cols=221 Identities=34% Similarity=0.559 Sum_probs=192.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++||+++|++. .+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.|||.++++++++. ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2899999999999999999999999999999999999999999999999999998876 689
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC--C----HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA--D----LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~--~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|+|||+..||+. ||+|||.||.... . ++++.++++.. +++..+..++.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence 999999999976 9999999996532 2 23444555554 4555556667899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
||+++|++++||||+|+||++.+..+...|+++.+ |.|+|+||||...+.. ||||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988753 7899999999998865 99999999999999999999998764
Q ss_pred CcHHHHH
Q 000689 657 NGVYAKL 663 (1350)
Q Consensus 657 ~~~y~~l 663 (1350)
+..-+.+
T Consensus 227 n~fVA~F 233 (338)
T COG3839 227 NLFVAGF 233 (338)
T ss_pred chhhhhh
Confidence 4433433
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=401.69 Aligned_cols=235 Identities=52% Similarity=0.848 Sum_probs=218.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 36999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|+||+|.+|++|++||+.++....+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665677778888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
|||||||++||+++...+.+.|++..+|+|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|.+++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~--~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc--ccHHHHHHhc
Confidence 9999999999999999999999987678999999999999988999999999999999999999876 6777776653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=401.59 Aligned_cols=233 Identities=57% Similarity=0.925 Sum_probs=215.0
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+.. +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|+||+|.+|..|++||+.++....+.+++.+.++..++.+++..+|.|+++.++....+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777788888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHH
Q 000689 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l 1318 (1350)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++.. .+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ--GGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc--Ccchhhh
Confidence 9999999999999999999999998789999999999999988999999999999999999999876 5666543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=379.60 Aligned_cols=223 Identities=36% Similarity=0.566 Sum_probs=192.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---HHHHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~---~~~~r 503 (1350)
+|+++||+..||+ .+.+|+||||+|++||++||+||||||||||++.|.|+.+|++|+|.++|.++..++ .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 6999999999984 457999999999999999999999999999999999999999999999999998876 55678
Q ss_pred ccEEEEccCCCcccc-cHHHHhhcCCCCCCHH--H---HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRPDADLN--E---IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~--~---~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
++|||++|++.|.+. |+.+|++.|+-....- . +....+...+.+.++++ |+....-.+..+|||||+|||+|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHH
Confidence 899999999999866 9999999986532210 0 00011222334445555 76667777888999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
||||+++|+|+|-|||+|+|||.+.+.|++.|+++. .|.|+|+.-|.++.+++ ||||+-|++|+|+..|+.+|+-+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999999999999999999874 58999999999999975 99999999999999999999743
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=401.55 Aligned_cols=235 Identities=62% Similarity=1.001 Sum_probs=215.2
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+...+.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533347999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|+||+|.+|..|++||+.++....+.+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566777778888899999999999999999998999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHHHH
Q 000689 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
|||||||++||+.+.+.+.+.|++..+|+|+|++||+++.+..||+|++|++|++++.|+++++... .+.++.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~--~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ--KGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc--ChhHHHHh
Confidence 9999999999999999999999987778999999999999988999999999999999999999865 55555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=396.72 Aligned_cols=221 Identities=38% Similarity=0.642 Sum_probs=207.7
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 568999999999743 2469999999999999999999999999999999999999999999999999998888899999
Q ss_pred cEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1161 i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
++|+||+|.+|++|++|||.+... .+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987643 5678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999988778999999999999989999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=417.65 Aligned_cols=232 Identities=36% Similarity=0.564 Sum_probs=194.3
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~ 502 (1350)
+|+++||+++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999996321 246999999999999999999999999999999999999999999999999998877544 5
Q ss_pred hccEEEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|++||||||++.+|. .|++||+.++.. ..+.++..+. +.+.+..+ |+.......+.+||||||||++|||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IAR 153 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK-----VTELLALV--GLGDKHDSYPSNLSGGQKQRVAIAR 153 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999995 699999998642 1222222211 12223333 5555566778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++..+.
T Consensus 154 AL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~ 233 (343)
T TIGR02314 154 ALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233 (343)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC
Confidence 99999999999999999999999999999998853 8999999999999976 99999999999999999999987654
Q ss_pred CcHHHHHHH
Q 000689 657 NGVYAKLIR 665 (1350)
Q Consensus 657 ~~~y~~l~~ 665 (1350)
...++.++.
T Consensus 234 ~~~~~~~~~ 242 (343)
T TIGR02314 234 TPLAQKFIR 242 (343)
T ss_pred cHHHHHHHh
Confidence 455555554
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=383.99 Aligned_cols=210 Identities=38% Similarity=0.562 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH----H
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW----L 502 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~----~ 502 (1350)
++++||++.|.... ...+|+++||+|++||++||+||||||||||+++|.|+..|++|+|.++|.|+..++.+. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 246999999999999999999999999999999999999999999999999999887542 4
Q ss_pred hccEEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhc-CCCCCCChHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVR-ERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGqkqri~iA 578 (1350)
|++||||+|+..|++. |++|||.+... .....+..++ +.+....+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 5679999999999876 99999985321 1111111111 12222333 5654444 66889999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEE
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSE 644 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~ 644 (1350)
|||+.+|+|++.||||++||.++.+.|.+.+.++. .|+|+|+|||+......|||++.|++|++..
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999884 4899999999999999999999999999543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=402.05 Aligned_cols=240 Identities=33% Similarity=0.539 Sum_probs=217.7
Q ss_pred CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH
Q 000689 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 423 ~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~ 502 (1350)
...|.|+++|++++|+.. +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999742 2469999999999999999999999999999999999999999999999999988888888
Q ss_pred hccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 503 RQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|+.++||+|+|.+|++|++||+.+... ...+++.++.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2345667777788889999999999999999999999999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHH
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~ 662 (1350)
++|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. ++.|++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~-~~~~~~ 251 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE-DGVFAS 251 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc-chHHHH
Confidence 9999999999999999999999999999887799999999999999889999999999999999999998753 566777
Q ss_pred HHH
Q 000689 663 LIR 665 (1350)
Q Consensus 663 l~~ 665 (1350)
++.
T Consensus 252 ~~~ 254 (257)
T cd03288 252 LVR 254 (257)
T ss_pred HHh
Confidence 664
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=411.28 Aligned_cols=215 Identities=33% Similarity=0.598 Sum_probs=189.0
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..|+++||+++|+ +..+++|+||+|++||+++|+|||||||||++++|+||..|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 34699999999999999999999999999999999999999999999999999998876 468
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCC-C--CCHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRP-D--ADLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~-~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
||+|||+..||+. ||+|||.||.. . ...+ .+.++.+.. |+...-.+++.+|||||+|||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV-----------~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELV-----------GLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc-----------CchhhhhhChhhhChHHHHHHHH
Confidence 9999999999965 99999999975 1 1222 334444444 44445566778999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
||||..+|++||||||.||||.+-+..++..++++. .|.|.|+|||+-+... -+|||+||++|+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999998874 4899999999998865 5999999999999999999999987
Q ss_pred cC
Q 000689 655 GE 656 (1350)
Q Consensus 655 ~~ 656 (1350)
+.
T Consensus 228 P~ 229 (352)
T COG3842 228 PA 229 (352)
T ss_pred cc
Confidence 53
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=397.59 Aligned_cols=227 Identities=49% Similarity=0.853 Sum_probs=212.6
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
|.|+++|++++|+.. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999632 359999999999999999999999999999999999999999999999999988888889999
Q ss_pred cEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1161 i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
++|+||+|.+|.+|++||+.++.+...++++.++++..++.+++..+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667888888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999888765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=362.66 Aligned_cols=208 Identities=34% Similarity=0.535 Sum_probs=180.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---HHHHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~---~~~~r 503 (1350)
+|+|+||++.|++. .++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+. ...+|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999864 46999999999999999999999999999999999999999999999999998775 44699
Q ss_pred ccEEEEccCCCcccc-cHHHHhhcCCC--CCCH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHH
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRP--DADL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~ 576 (1350)
++||+|+||.-|... ||.||++|... .... +++.++++.+++.+-...| +.+|||||+||++
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchHHHHHH
Confidence 999999999988755 99999999643 1222 3344555555555444444 5689999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||||++.+|++||-||||.+|||++...|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999884 69999999999999987 56999999999987543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=383.34 Aligned_cols=202 Identities=38% Similarity=0.554 Sum_probs=172.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 5899999999974 4699999999999999999999999999999999999999999999999987433 3479
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCCCC--HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPDAD--LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~~~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.||+ .||+||+.+|..... .++-.+ .+.+.+... |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 99999999997 599999999876321 221111 223444444 77667777888999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEE
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQ--GSVS 643 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~--G~i~ 643 (1350)
+|+||+||||++|||+.|+..+++.+.++. .++|+++|||+++..-. +|||+||.+ |+|.
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999998875 47999999999999765 999999998 5553
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=357.16 Aligned_cols=209 Identities=37% Similarity=0.590 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|.+++|.|+|...+ =.++++|++||++||+||||||||||+++|.||..|.+|+|.|+|+|....++.. +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 67889999997432 2578999999999999999999999999999999999999999999988776643 5699
Q ss_pred EEccCCCcccc-cHHHHhhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 508 LVSQEPALFAT-TIKENILLGRPD------ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+++||..||.- ||++||.+|... ...+.++.++...++..+..+||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999976 999999999642 124567778888888888887774 799999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+++-|||+||||+|+|||.-+......+.++. ++.|+++|||.++.++. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998875 58899999999999876 999999999999999999998865
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=396.91 Aligned_cols=233 Identities=55% Similarity=0.856 Sum_probs=212.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++.+|+.|++||+.++.+..+.+++.++++...+.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665556667777788888999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHH
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~ 664 (1350)
|||||||++||+++.+.+.+.|.++.+|+|+|++||+++.+..||++++|++|++++.|+.+++... ...|+.++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~--~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK--GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc--ccHHHHHH
Confidence 9999999999999999999999988668999999999999988999999999999999999988765 45555444
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=396.91 Aligned_cols=226 Identities=62% Similarity=0.953 Sum_probs=208.8
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665555667777777888999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999998789999999999999988999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=415.48 Aligned_cols=225 Identities=31% Similarity=0.524 Sum_probs=193.2
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR 1158 (1350)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
++|+||||++.+|. .|++||+.++.. ..+. +.+.++++.+++.++.... ..+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999995 799999987531 1222 3456777777776654443 3579999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 8999999999999966 99999999999999999999987
Q ss_pred cCCCchh-HHHH
Q 000689 1309 NNPDGCY-ARMI 1319 (1350)
Q Consensus 1309 ~~~~g~y-~~l~ 1319 (1350)
. |...+ .+++
T Consensus 231 ~-p~~~~~~~~~ 241 (343)
T TIGR02314 231 H-PKTPLAQKFI 241 (343)
T ss_pred C-CCcHHHHHHH
Confidence 6 44433 4443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=394.24 Aligned_cols=227 Identities=52% Similarity=0.865 Sum_probs=209.8
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
|.|+++|++|+|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2359999999999999999999999999999999999999999999999999988887888899
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
++|++|++.+|.+|++||+.++.+....+++.++++..++.+++..+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999886655566777777888889999999999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=388.69 Aligned_cols=214 Identities=35% Similarity=0.571 Sum_probs=193.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.++++|++|+|++ +++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCc-cCcccHHHHhccCCCC---------CCHH-HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1162 AIVPQEPC-LFASTIYENIAYGHES---------ATES-EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1162 ~~VpQdp~-LF~gTIreNL~~~~~~---------~td~-ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
+||||++. -|.-|++|=+.+|+-. ..|+ .+.+|++..++.++..+. -..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 99999974 5667999999888532 1133 478889999999886542 246999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhh-hhcCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti-~~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
.|||||.++|+||+||||||+||...+-.|++.++++. +|+|+|+|.|+++.. +.||++++|++|+|+.+|+|++.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 479999999999876 569999999999999999999998
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 65
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=396.04 Aligned_cols=227 Identities=74% Similarity=1.085 Sum_probs=207.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987655555666667777788889999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||||||++||+.+.+.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887778999999999999988999999999999999999888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=398.57 Aligned_cols=210 Identities=24% Similarity=0.335 Sum_probs=170.0
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
..+++.+|+|.|+..+. +.+++++++++.-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 36999999999975432 799999999999999999999999999999999999999999998876 789
Q ss_pred cEEEccCCccC-cccH--HHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCC-CCCChhHHHHHHHHHHh
Q 000689 1161 MAIVPQEPCLF-ASTI--YENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERG-VQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1161 i~~VpQdp~LF-~gTI--reNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G-~~LSgGQrQrlaiARAL 1236 (1350)
|+|-.|..+=| +-.+ -+-+.-..|..+++|+.+.|...|+..-+. -.+ ..||||||=|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la-----------~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELA-----------LQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhh-----------hccccccCCcchhHHHHHHHh
Confidence 99999987643 2221 111111124458999999988887654332 222 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEe-cChhHHhhcCCCch
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL-GSHSHLLKNNPDGC 1314 (1350)
Q Consensus 1237 Lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~-Gt~~eLl~~~~~g~ 1314 (1350)
..+|.+|||||||..||.++-..+-++|+.+.. -||+|+|+.+.+.. |+.++|.++|+|.-. |. --.
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~---------~~~ 566 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG---------IDK 566 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEEeeecc---------HHH
Confidence 999999999999999999999999999987544 69999999999987 999999999999862 21 114
Q ss_pred hHHHHHHhhh
Q 000689 1315 YARMIQLQRF 1324 (1350)
Q Consensus 1315 y~~l~~~q~~ 1324 (1350)
|.++...+..
T Consensus 567 yKkl~~~e~~ 576 (582)
T KOG0062|consen 567 YKKLLGAELR 576 (582)
T ss_pred HHHHHHHHHh
Confidence 6677665543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=388.42 Aligned_cols=219 Identities=37% Similarity=0.616 Sum_probs=192.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC-CCCHHHHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK-SLKLRWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 505 (1350)
.++++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58999999999864 57999999999999999999999999999999999999999999999999998 4788899999
Q ss_pred EEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 506 IGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 506 i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+|||+|+| .+|..||.|.++||..+ .+.+++.+..+. .+... |+.....+...+||||||||+|||.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~-----~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE-----ALELV--GLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHH-----HHHHc--CchhhccCCccccCCcceeeHHhhHHH
Confidence 99999999 78999999999999763 333333322221 12222 555556677889999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+.+|++||||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999864 5899999999999977 999999999999999999998765
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=374.07 Aligned_cols=227 Identities=30% Similarity=0.494 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC-CHHHhhc
Q 000689 1082 EVELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY-NLKSLRR 1159 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~-~l~~lR~ 1159 (1350)
.++.+|+++.|+.+. ..++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 11599999999999999999999999999999999999999999999999876543 3446788
Q ss_pred ccEEEccCCc--cC-cccHHHHhccC----CCCCCHHHHHHHHHHhccHHH-HhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1160 HMAIVPQEPC--LF-ASTIYENIAYG----HESATESEIIEAARLANADKF-ISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1160 ~i~~VpQdp~--LF-~gTIreNL~~~----~~~~td~ei~~al~~a~l~~~-I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
.+.+|+|||. |= .-||++-|.-+ .-+-...+++++++.+++.+- ..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 9999999995 21 23666665422 122345568999999998753 33444 579999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||.-+|++||||||||+||.-.++.|++.+.+..+ +-|.|+|||+++.+.+ ||||+||++|+++|.++-++++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998876 4599999999999988 99999999999999999999987
Q ss_pred cCCCchhHHHHH
Q 000689 1309 NNPDGCYARMIQ 1320 (1350)
Q Consensus 1309 ~~~~g~y~~l~~ 1320 (1350)
. +.-.|.+..-
T Consensus 232 ~-~~h~ytr~Ll 242 (252)
T COG1124 232 H-PSHPYTRELL 242 (252)
T ss_pred C-CccHHHHHHH
Confidence 6 5666766543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=401.44 Aligned_cols=218 Identities=37% Similarity=0.652 Sum_probs=197.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+.+|.+. .+|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999886 789
Q ss_pred EEEccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHES------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
++|+|+..||.. ||+|||.|+... .-++++.++++..++.+++.+.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998542 22567889999999999988876 579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|++++||||.|+||++....+..-|+++.+ |.|+|.|||+....+. +|||+||++|+|.+.|+|.|+..+ |
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~-P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER-P 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC-c
Confidence 99999999999999999999999999999988543 7899999999998866 999999999999999999999987 5
Q ss_pred CchhH
Q 000689 1312 DGCYA 1316 (1350)
Q Consensus 1312 ~g~y~ 1316 (1350)
...|-
T Consensus 226 ~n~fV 230 (338)
T COG3839 226 ANLFV 230 (338)
T ss_pred cchhh
Confidence 65553
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=371.51 Aligned_cols=227 Identities=33% Similarity=0.521 Sum_probs=183.9
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC-CHHHHhc
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL-KLRWLRQ 504 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~-~~~~~r~ 504 (1350)
+++++|+++.|+... -.++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997432 12499999999999999999999999999999999999999999999999877554 3346788
Q ss_pred cEEEEccCCC--ccc-ccHHHHhhcCCCC----CCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHHH
Q 000689 505 QIGLVSQEPA--LFA-TTIKENILLGRPD----ADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 505 ~i~~v~Q~~~--lf~-~ti~eNi~~g~~~----~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri~ 576 (1350)
.|.+|||||. |-+ -||++-|.=+... ...+++.++++.. |+. .....++.+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~V-----------gL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQV-----------GLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHc-----------CCCHHHHhcCchhcChhHHHHHH
Confidence 9999999995 322 3777766433211 1122233333333 333 3456778899999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|||||.-+|++||||||||+||+.....|++.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999998875 5599999999999987 99999999999999999999987
Q ss_pred ccCCcHHHHHH
Q 000689 654 KGENGVYAKLI 664 (1350)
Q Consensus 654 ~~~~~~y~~l~ 664 (1350)
.+...+-+.|.
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 74333333333
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=368.67 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=193.1
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---Hhh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR 1158 (1350)
.|++++|+++|.++ .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999644 799999999999999999999999999999999999999999999999999988764 579
Q ss_pred cccEEEccCCccCcc-cHHHHhccCCC---CCCHHHHH----HHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGHE---SATESEII----EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~~---~~td~ei~----~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
+++|+++|...||+. ||+||+.+.-. +.+++++. ..++.+|+..-+.. .-.+.||||.+.|+
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~----------~~PsELSGGM~KRv 154 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD----------LYPSELSGGMRKRV 154 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh----------hCchhhcchHHHHH
Confidence 999999999999976 99999998532 23444443 34555666554221 22467999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|||||+.-+|+||++|||||+|||.+...+-+.|+++.+ |.|+|+|||+++++.. ||||+++.+|+|+..|++++|.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988764 8899999999999977 8999999999999999999999
Q ss_pred hcCCCchhHHHH
Q 000689 1308 KNNPDGCYARMI 1319 (1350)
Q Consensus 1308 ~~~~~g~y~~l~ 1319 (1350)
+. ++-...+++
T Consensus 235 ~s-d~P~v~qf~ 245 (263)
T COG1127 235 AS-DDPWVRQFF 245 (263)
T ss_pred hC-CCHHHHHHh
Confidence 86 355444444
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=387.96 Aligned_cols=220 Identities=37% Similarity=0.585 Sum_probs=204.4
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
|.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 458999999999742 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
++|++|++.+|+.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987643 4566788888888999999999999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=387.11 Aligned_cols=220 Identities=41% Similarity=0.727 Sum_probs=203.2
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
|+|+++|++++|+.. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2469999999999999999999999999999999999999999999999999988887778899
Q ss_pred cEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1161 i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
++|+||+|.+|..|++||+.++....+.+++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999998765444566788889999999999999999999999888999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEec
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~G 1301 (1350)
++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988789999999999998865
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=404.46 Aligned_cols=221 Identities=27% Similarity=0.468 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC-------
Q 000689 1082 EVELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY------- 1152 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~------- 1152 (1350)
.|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHhhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhccHHHHhcCCCCcc-ccccCC
Q 000689 1153 ---------NLKSLRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESEIIEAARLANADKFISSLPDGYK-TFVGER 1218 (1350)
Q Consensus 1153 ---------~l~~lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~ei~~al~~a~l~~~I~~lp~Gld-t~vge~ 1218 (1350)
+...+|++++||+|+| .+|..|++|||.++.. ..++++..+ . +.+++..+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6899999999987632 234443322 1 12344444 453 346677
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCe
Q 000689 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-NAHVIAVIDDGK 1296 (1350)
Q Consensus 1219 G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~~DrI~Vl~~Gr 1296 (1350)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|++.. +|+|+|+|||+++.+. .||||+||++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 5899999999999874 599999999999
Q ss_pred EEEecChhHHhhc
Q 000689 1297 VAELGSHSHLLKN 1309 (1350)
Q Consensus 1297 IvE~Gt~~eLl~~ 1309 (1350)
|++.|+|++++..
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999988754
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=385.11 Aligned_cols=215 Identities=36% Similarity=0.637 Sum_probs=195.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCC-CCCHHHhhcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR-KYNLKSLRRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~-~~~l~~lR~~ 1160 (1350)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred cEEEccCC--ccCcccHHHHhccCCCC--CCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEP--CLFASTIYENIAYGHES--ATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp--~LF~gTIreNL~~~~~~--~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+|+|+|+| .+|..||.+.++||..+ .+.+| +.++++.+++.++.... ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 79999999999998542 44444 66778888888774443 36799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ |+|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999764 5899999999999988 999999999999999999999876
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=403.83 Aligned_cols=222 Identities=30% Similarity=0.473 Sum_probs=189.9
Q ss_pred ceEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC------
Q 000689 426 GLIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL------ 497 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~------ 497 (1350)
..|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3699999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhccEEEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcC
Q 000689 498 ----------KLRWLRQQIGLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRE 562 (1350)
Q Consensus 498 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~ 562 (1350)
....+|++||||+|+| .+|+.||+|||.++.. ..+.++.. +. +.+.+..+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcC
Confidence 3457889999999998 6899999999998742 22333222 11 23445555 664 56788
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCC
Q 000689 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIR-KADVVAVLQQG 640 (1350)
Q Consensus 563 ~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G 640 (1350)
.+.+||||||||++|||||+.+|+||||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 5899999999999875 59999999999
Q ss_pred EEEEecChHHHHhc
Q 000689 641 SVSEIGTHDELIAK 654 (1350)
Q Consensus 641 ~i~~~g~~~~l~~~ 654 (1350)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=353.97 Aligned_cols=208 Identities=30% Similarity=0.529 Sum_probs=187.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~lR~ 1159 (1350)
|+|+||+.+|+.. .++|+||||+|++||.+=|+|||||||||++++|++...|++|+|.++|.|+..+.- --||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999865 579999999999999999999999999999999999999999999999999987764 45999
Q ss_pred ccEEEccCCccC-cccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCLF-ASTIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~LF-~gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+||+|+||-.|. +-|+.||+++.-. ... .+.+.++++.+|+.+-...|| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999766 5699999997642 122 345788999999999999998 4799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecCh
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||++.+|++||-||||-+|||++...|++.+.+.- .|.|||+.||+.+.+.. --|++.+++||++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998864 69999999999999977 578999999999976554
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=386.82 Aligned_cols=219 Identities=52% Similarity=0.828 Sum_probs=201.1
Q ss_pred CCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhh
Q 000689 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1079 ~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR 1158 (1350)
..|.++++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999754334699999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1159 RHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
++++|+||+|.+|.+|++||+.++......+++++.++...+++++..+|.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998755445556666667788899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeE
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrI 1297 (1350)
+|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998778999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=376.40 Aligned_cols=210 Identities=33% Similarity=0.551 Sum_probs=181.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.+.|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999743 59999999999999999999999999999999999999999999999988765432 4579
Q ss_pred EEEccCC---CcccccHHHHhhcCCCCC----------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 507 GLVSQEP---ALFATTIKENILLGRPDA----------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 507 ~~v~Q~~---~lf~~ti~eNi~~g~~~~----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
|||||.. |-|+-||+|-+.+|+... +.+++.++++.+++.++ ......+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHH
Confidence 9999964 568899999999985421 23566677777665554 34455689999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999864 9999999999999865 99999995 568889999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=383.07 Aligned_cols=220 Identities=46% Similarity=0.742 Sum_probs=200.5
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
|.|+++|++++|++. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999887777777889
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
++|++|++.+|..|++||+.++.+....+++.+.++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999999875544555677778888888899999999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999886668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=363.90 Aligned_cols=222 Identities=30% Similarity=0.506 Sum_probs=194.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHhh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~---l~~lR 1158 (1350)
.|+++||+.+||+ ++.+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++.... +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999998887 67788
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCCC-----------CC---HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHES-----------AT---ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~~-----------~t---d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
++||+|+|.|-|-. -|+.+|+..|.-. .+ .....+|++.+++.++... +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 99999999998875 4999999766422 22 2346788888888876543 456799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEe
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~ 1300 (1350)
|||+||++|||||..+|+|++-|||+|+|||++.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|||+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 58999999999999866 999999999999999
Q ss_pred cChhHHhhcCCCchhHHHHH
Q 000689 1301 GSHSHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1301 Gt~~eLl~~~~~g~y~~l~~ 1320 (1350)
|++++|-+ ..+...|.
T Consensus 230 g~~~el~~----~~~~~iYg 245 (258)
T COG3638 230 GPASELTD----EALDEIYG 245 (258)
T ss_pred CChhhhhH----HHHHHHhc
Confidence 99999643 34444444
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=390.02 Aligned_cols=213 Identities=34% Similarity=0.538 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~lR~ 1159 (1350)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 369999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ccEEEccCCccCcc-cHHHHhccCCC---CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1160 HMAIVPQEPCLFAS-TIYENIAYGHE---SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~g-TIreNL~~~~~---~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
+++||||+|.+|.. |++||+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 99999986521 12322 344455555554433 2333579999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+++|+||||||||++||+.+...+.+.|++..+ |+|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 8999999999999876 99999999999999999999875
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=388.20 Aligned_cols=212 Identities=35% Similarity=0.605 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccC-----CCCccEEEECCccCCCCC--HH
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFY-----EPSSGRVMIDGKDIRKYN--LK 1155 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~-----~p~~G~I~iDG~di~~~~--l~ 1155 (1350)
|+++||+++|+.+ ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999643 6999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HhhcccEEEccCCccCcccHHHHhccCCCC--C-----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHES--A-----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~gTIreNL~~~~~~--~-----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
.+|++++|+||++.+|..|++||+.++... . .++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999865321 1 12345667777777655443221 4679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+.+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999987655899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=384.70 Aligned_cols=220 Identities=51% Similarity=0.835 Sum_probs=198.2
Q ss_pred CCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH
Q 000689 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 423 ~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~ 502 (1350)
...++|+++|++++|+++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34578999999999975323469999999999999999999999999999999999999999999999999887777778
Q ss_pred hccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 503 RQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
++.++|++|++.+|+.|++||+.++.......++.+.+....+.+++..+|.|+++.+.+.+.+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999876544444555555556778899999999999999999999999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSV 642 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 642 (1350)
++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999988778999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=377.08 Aligned_cols=219 Identities=34% Similarity=0.535 Sum_probs=180.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCe---eCCCCCHHHHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH---DIKSLKLRWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~---~~~~~~~~~~r 503 (1350)
+|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 35899999999999999999999999999999999999999999999999 555533 334
Q ss_pred ccEEEEccCCCccc-ccHHHHhhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 504 QQIGLVSQEPALFA-TTIKENILLGRPDA--DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
++||+|+|+..||. .||++||+||.+-. ...+.....+. .+.+.-+ .++..-...+.+||||||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv---~elL~lv--qL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV---EELLRLV--QLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHH---HHHHHHh--cccchhhcCchhcChHHHHHHHHHHH
Confidence 67999999999995 59999999997311 01111111111 1222111 33334456678999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
|..+|++||||||++|||++..+.+..-|+++. -|.|+++|||+.+.+.. ||||+||++|+|...|+++|+...+
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 999999999999999999999999999998874 38999999999998765 9999999999999999999998775
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=345.23 Aligned_cols=209 Identities=35% Similarity=0.574 Sum_probs=189.2
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|.+++|.|+|...| =.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996543 368999999999999999999999999999999999999999999999887765 45799
Q ss_pred EEccCCccCcc-cHHHHhccCCCC------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHES------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
+++||.-||.- ||++|+.+|... ...+.+..++..+|+.+|..+|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999976 999999988532 23456889999999999999998 3699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|+|+-|||+||||.|+|||.-..++...+...+ ++.|+++|||.++.++. +||++++++|||+++|+-++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998876 47899999999999866 999999999999999999999876
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=381.70 Aligned_cols=467 Identities=15% Similarity=0.133 Sum_probs=344.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCChhHH------HHHHHHHHHHHHHHHHHH
Q 000689 152 YFLVVGAAIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDV------VYAINTDAVIVQDAISEK 225 (1350)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~G~l------~sr~~~D~~~i~~~~~~~ 225 (1350)
.+.+++++..+....+.++-.....+.-.-|-..+.++-+....-|+.. ..|.+ =.|+..|+...-+.....
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 3434444444444455554443444444444445556656655334332 33322 268999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 226 LGNFIHYLATFVTGFAVGFSA---------------VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIV 290 (1350)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~---------------~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1350)
...++.++++++.-.+++..+ .-.+..++++.+++..++..++++.+.++..+.++..++.-...
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 777777776655444443311 11223344445555556666788888888888888888888888
Q ss_pred HHHHchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Q 000689 291 EQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIAT 370 (1350)
Q Consensus 291 ~E~l~~i~~vk~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~ 370 (1350)
...-++...|-.|+.|+.+.++.++......+...+......-...+.....+++.++-+..++-....|.++.|.++..
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 88999999999999999999887777766665544444333333333333444444444455566677899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCCC-CCCC-CccC---CCCcceEEEEEEEEECCCCCCC
Q 000689 371 MFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKP--SIDR-NSES-GLEL---DSVSGLIELKHVDFSYPSRPEV 443 (1350)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~--~~~~-~~~~-~~~~---~~~~g~i~~~~v~f~y~~~~~~ 443 (1350)
..++......++.+...+..+..-++...|+.++.+.-. +.+. .... +... ...+..|+++|++..-|+. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 877777777888999999999999999999999864221 0000 0000 0000 1114689999999998853 3
Q ss_pred ccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHH
Q 000689 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKEN 523 (1350)
Q Consensus 444 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 523 (1350)
..|+++||++++|+.+-|.||||||||||++.|+|+++--+|+|..-.. ..+-|+||.|++-.||.||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHH
Confidence 6899999999999999999999999999999999999999999977621 25899999999999999999
Q ss_pred hhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHH
Q 000689 524 ILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601 (1350)
Q Consensus 524 i~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~ 601 (1350)
|+|.+.. .+++++.+++.++++.+++.++.+- ..-...||+|||||||+||.|+++|++++|||+|||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9998764 7899999999999999999887432 22445799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 000689 602 EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQ 638 (1350)
Q Consensus 602 ~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 638 (1350)
|..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999889999999999998887766655554
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=394.98 Aligned_cols=217 Identities=30% Similarity=0.521 Sum_probs=191.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742223599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEP--CLFASTIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp--~LF~gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+||+|+| .++..|++|||.++.. ..+ ++.+.++++..++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4667899999987632 123 234677778888876655443 57999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+++|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 8999999999999988999999999999999999998765
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=403.90 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=186.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999887654 4689
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.+|+ .||+|||.|+... .+..+..+ .+.+.+..+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999997531 22222211 112233333 55555666778999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999998753 8999999999998865 9999999999999999999998764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=388.26 Aligned_cols=218 Identities=30% Similarity=0.511 Sum_probs=191.7
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHhh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE---PSSGRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~iDG~di~~~~l~~lR 1158 (1350)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999964 369999999999999999999999999999999999985 6999999999999988888889
Q ss_pred cccEEEccCCccCcccHHHHhccCCC--------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1159 RHMAIVPQEPCLFASTIYENIAYGHE--------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~gTIreNL~~~~~--------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
++++|+||+|.+|..|++||+.++.. ...++++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 1122345667777777655432 23456678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988779999999999998865 999999999999999999999865
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=402.69 Aligned_cols=225 Identities=29% Similarity=0.480 Sum_probs=189.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 6999999999963 3589999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.+|+. |++|||.|+... .+.++..+. +.+.+..+ |+.......+.+||||||||++|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 999999997431 222222211 12222222 45555566778999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccCCcHH
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVY 660 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y 660 (1350)
+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++.+...
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~ 233 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHH
Confidence 9999999999999999999999999998853 8999999999999865 999999999999999999999877543333
Q ss_pred HHH
Q 000689 661 AKL 663 (1350)
Q Consensus 661 ~~l 663 (1350)
+++
T Consensus 234 a~~ 236 (351)
T PRK11432 234 ASF 236 (351)
T ss_pred HHh
Confidence 443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=369.00 Aligned_cols=198 Identities=33% Similarity=0.563 Sum_probs=176.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.+++++|+.+|+. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999975 4799999999999999999999999999999999999999999999999988543 4578
Q ss_pred EEEccCCccCcc-cHHHHhccCCCCC------CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHESA------TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~~------td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||+|++.||.- |+++|+.++.... ..+.+.+.++.+|+.+|-...| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 999999999986 9999999875421 2345778888999988877776 579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CeEE
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDD--GKVA 1298 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~--GrIv 1298 (1350)
||+.+|+||+||||.+|||+.|...+|+-+.+.. .++||++|||++++... +|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998865 46999999999998755 999999999 5553
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=373.35 Aligned_cols=210 Identities=30% Similarity=0.530 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+..|++|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999643 59999999999999999999999999999999999999999999999998876533 5789
Q ss_pred EEEccCC---ccCcccHHHHhccCCCC----------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1162 AIVPQEP---CLFASTIYENIAYGHES----------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1162 ~~VpQdp---~LF~gTIreNL~~~~~~----------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
|||||.. .-|.-||+|=+.+|... .+.+++.+|++.+++.++..+ ++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence 9999965 34788999999877421 124789999999999988643 354 59999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 9999999999999866 99999885 678899999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=384.27 Aligned_cols=217 Identities=35% Similarity=0.549 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH---HHHhc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL---RWLRQ 504 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~---~~~r~ 504 (1350)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999887664 56788
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
.|+||+|++.+|+. |++||+.++.. ..+.++..+. +.+.+..+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999988632 1222222211 12233333 55555566778999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+.+|+||||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999875 38999999999999876 999999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=380.98 Aligned_cols=474 Identities=16% Similarity=0.153 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc---CChHHHHHHHHhhHHHHHHHHHH
Q 000689 802 YCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEE---NESARIAARLALDANNVRSAIGD 878 (1350)
Q Consensus 802 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~---~~~G~i~~rl~~D~~~v~~~~~~ 878 (1350)
...+|.+++.+..++...+.|+-.....++-.-+-+.+.++-+...-.||-... +.+-..=.|+..|+...-+....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 345666777777777888888888888888888888888888887755543221 11123446888998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000689 879 RIQVIVQNTALMLVACTAGF---------------VLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQL 943 (1350)
Q Consensus 879 ~l~~~i~~~~~~i~~~~~~~---------------~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1350)
....++.+++.++....++. .+...+.++++..+++..+..++..+.+.+..-+.++.++..+..
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66666666655554444332 112222333333333333334444444445555666677777888
Q ss_pred HHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000689 944 AGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIR 1023 (1350)
Q Consensus 944 ~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 1023 (1350)
+...-++.+.|..|+-|+...++..+..+.......+..........+.....++...+-+..++.....|.+++|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 88888999999999999887766555554443322222111111111122222233333344445556789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCCCC--CCC--CCCCCCcEEEEEEEEECCCCCC
Q 000689 1024 VFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEI--EPDDPDA--TPV--PDRLRGEVELKHVDFSYPSRPD 1097 (1350)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~~--~~~~~~~--~~~--~~~~~g~I~f~nVsf~Y~~~~~ 1097 (1350)
...++......++-+....+.+..-.+...|+.++.+.-... ++..+.. ... .......|+|+|++..-|..
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 999999888999999999999999999999998875432211 1000000 000 01114679999999998854
Q ss_pred CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHH
Q 000689 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYE 1177 (1350)
Q Consensus 1098 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIre 1177 (1350)
.+.|+++||+|+|||.+-|.|+||||||||+++|.|+++--+|+|-+-. -+++-++||.|.+-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3789999999999999999999999999999999999999999987641 13578999999999999999
Q ss_pred HhccCCCC--CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHH
Q 000689 1178 NIAYGHES--ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255 (1350)
Q Consensus 1178 NL~~~~~~--~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~ 1255 (1350)
-|.|.+.. .+|+|+.+++.+++|.++++++.+ . ..-..-||+||||||++||.||++|++++|||||||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998754 899999999999999999998743 1 2234569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 000689 1256 SERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVID 1293 (1350)
Q Consensus 1256 te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~ 1293 (1350)
+|..+.+.+++...+.|+|.|+||.......++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999988877666655443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=366.68 Aligned_cols=207 Identities=35% Similarity=0.543 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHh-
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSL- 1157 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~l- 1157 (1350)
++++||+..|.... ..++|+++||+|++||.|||+||||||||||+++|.++-.|++|+|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 2469999999999999999999999999999999999999999999999999999874 334
Q ss_pred hcccEEEccCCccCcc-cHHHHhccC----CCCC--CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1158 RRHMAIVPQEPCLFAS-TIYENIAYG----HESA--TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~g-TIreNL~~~----~~~~--td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
|++||+|+|+..|++. |++||+.+. .... ..+.+.+.++..++.+.... ....+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4579999999988764 999999842 2211 13344555555666654431 23467999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEEE
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE 1299 (1350)
||||||+.+|+|++.||||.+||++|.+.|.+.+++.. .|+|+|+|||+......|||++.|.+|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999874 3899999999999999999999999999544
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=353.73 Aligned_cols=475 Identities=19% Similarity=0.259 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChHHHHHHHHhhHHHHHHHHHHHHHH
Q 000689 803 CYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQV 882 (1350)
Q Consensus 803 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ffd~~~~~~G~i~~rl~~D~~~v~~~~~~~l~~ 882 (1350)
+..++++.++..+...+.......+|++...++|.++.++++.+|+.-+++ -..++++.++++|+.++. +-...++.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 334455555556666777778889999999999999999999999999876 678999999999999998 66677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHccHHHHHHhhh--H
Q 000689 883 IVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNS--E 960 (1350)
Q Consensus 883 ~i~~~~~~i~~~~~~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~--e 960 (1350)
+.+..+.+++++....+.++++.+++...+.+.++..++......+..+..++...+...+.+..++|.+..+...- +
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 99999999999999999999988877777666666655554444444555667777888899999999998776542 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000689 961 LMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT 1040 (1350)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1350)
..+.+.|...-+...+...+..........+++.+++....+.+|+...+. .-+.....+..+++.+...++.++..
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 333344433332222222222222223445566677777777777665432 22222333455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCC
Q 000689 1041 LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPS 1120 (1350)
Q Consensus 1041 ~~~~~~~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~S 1120 (1350)
..|.+..+..+.+++.++-..++..+ -+.+.+.| .-..||++||.|+|+.. .--+..||++|++||.|=|+|.|
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p--~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFP--DWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCC--cccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCC
Confidence 99999999999999988654332211 11111222 23469999999999743 24578899999999999999999
Q ss_pred CCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcccHHHHhccCCCC-CCHHHHHHHHHHhc
Q 000689 1121 GCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES-ATESEIIEAARLAN 1199 (1350)
Q Consensus 1121 GSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~-~td~ei~~al~~a~ 1199 (1350)
||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++ +.+. ++++.+..-++.-.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 3333 56666655554443
Q ss_pred cHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHh--cCCceEEEEe
Q 000689 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA--CSGKTTIVVA 1277 (1350)
Q Consensus 1200 l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~--~~g~TvI~Ia 1277 (1350)
+.... ++.+|-=+ ...||-|||.|+|+--|++.+.+|++|||=-+--||.=.+...+.+--. ..|||++.||
T Consensus 433 l~~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 433 LAHKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred Hhhhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 33322 12222111 1359999999999999999999999999999999999999988876543 3699999999
Q ss_pred cCchhhhhcCEEEEEeCCeEEEec
Q 000689 1278 HRLSTIRNAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1278 HRlsti~~~DrI~Vl~~GrIvE~G 1301 (1350)
|+-.-...|||++-|++|+++|.-
T Consensus 507 HDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 507 HDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred cCchhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999853
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=402.10 Aligned_cols=230 Identities=37% Similarity=0.580 Sum_probs=192.1
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~ 502 (1350)
+|+++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 478999999997211 346999999999999999999999999999999999999999999999999998876543 4
Q ss_pred hccEEEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|++||||+|++.+|. .|++||+.++.. ..+.++..+ .+.+.+..+ |++......+.+||||||||++|||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAr 153 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIAR 153 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 788999999999986 599999988632 122222211 123344444 6666667778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
||+.+|+||||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 154 aL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998753 8999999999999876 99999999999999999999986533
Q ss_pred CcHHHHH
Q 000689 657 NGVYAKL 663 (1350)
Q Consensus 657 ~~~y~~l 663 (1350)
...+..+
T Consensus 234 ~~~~~~~ 240 (343)
T PRK11153 234 HPLTREF 240 (343)
T ss_pred cHHHHHH
Confidence 3333333
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=383.60 Aligned_cols=224 Identities=31% Similarity=0.560 Sum_probs=192.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCccCcccHHHHhccCCC--CCCHHHHHHHHHHhccH-HHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1162 AIVPQEPCLFASTIYENIAYGHE--SATESEIIEAARLANAD-KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1162 ~~VpQdp~LF~gTIreNL~~~~~--~~td~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
+|+||+|.+|..|++||+.++.. ...++++.+.++..++. ++ ......+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532 11233455555555553 22 234456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchh
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y 1315 (1350)
+|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|++++++.. +...|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~ 227 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEV 227 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHH
Confidence 999999999999999999999999999864 38999999999999875 999999999999999999999865 34456
Q ss_pred HHHHH
Q 000689 1316 ARMIQ 1320 (1350)
Q Consensus 1316 ~~l~~ 1320 (1350)
.+.+.
T Consensus 228 ~~~~~ 232 (241)
T PRK14250 228 TKLFI 232 (241)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=395.40 Aligned_cols=221 Identities=34% Similarity=0.593 Sum_probs=198.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 699999999996 35799999999999999999999999999999999999999999999999999998887 5789
Q ss_pred EEEccCCccCc-ccHHHHhccCCC---CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHE---SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~---~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
++|+|+..||+ .||+||+.||.. ...+ +.+.++++.+++.++-.+.| .+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 599999999864 1222 36788999999998876655 67999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhhcC
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLKNN 1310 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~~~ 1310 (1350)
|||..+|++|+||||-|+||.+-...++.-+++.. .|.|.|.|||+-+... -+|||+||++|+|...|+|+|+..+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~- 227 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER- 227 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC-
Confidence 99999999999999999999999999999998864 3899999999999865 4999999999999999999999987
Q ss_pred CCchhHHHH
Q 000689 1311 PDGCYARMI 1319 (1350)
Q Consensus 1311 ~~g~y~~l~ 1319 (1350)
|...|-.-+
T Consensus 228 P~~~fVA~F 236 (352)
T COG3842 228 PATRFVADF 236 (352)
T ss_pred cchHHHHHH
Confidence 666664433
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=373.97 Aligned_cols=204 Identities=35% Similarity=0.632 Sum_probs=183.9
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhc
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~ 1159 (1350)
.+.++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999743 236999999999999999999999999999999999999999999999999998888888999
Q ss_pred ccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1160 HMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
+++||||+|.+|++|+++|+.+... .+++++.++++ +......|||||+||++||||++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986542 45555544443 2345678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecCh
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|+||||||||++||+++...+.+.|++..+|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999998778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=401.61 Aligned_cols=217 Identities=30% Similarity=0.510 Sum_probs=189.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999973 3589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.+|+ .||+|||.|+... .+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999997432 1222221 1223444554 67777778889999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998753 8999999999999865 9999999999999999999999875
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=401.83 Aligned_cols=215 Identities=33% Similarity=0.528 Sum_probs=182.9
Q ss_pred CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH----hccEEEEccCCCcccc
Q 000689 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL----RQQIGLVSQEPALFAT 518 (1350)
Q Consensus 443 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 518 (1350)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999988877 7899999999999975
Q ss_pred -cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCC
Q 000689 519 -TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595 (1350)
Q Consensus 519 -ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts 595 (1350)
||+|||.++... .+.++..+ .+.+.+..+ |++...++.+.+|||||||||+|||||+.+|+|||||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999987432 12222211 112233333 66666778888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhccCCcHHHHHH
Q 000689 596 ALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 596 ~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~y~~l~ 664 (1350)
+||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++.+.....++
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 999999999999998874 3899999999999875 49999999999999999999998765344444443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=401.95 Aligned_cols=218 Identities=33% Similarity=0.574 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 6999999999963 3699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||+|++.||.. |++||+.|+.. ..+ ++++.++++..++.++..+. ...||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 122 34566777777776655443 3579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|+|||||||||+||+.+...+++.|+++.+ |+|+|+|||+++.+.. ||||+||++|+|++.|+|+++.++ |
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~-p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ-P 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999998754 8999999999999855 999999999999999999999876 5
Q ss_pred CchhH
Q 000689 1312 DGCYA 1316 (1350)
Q Consensus 1312 ~g~y~ 1316 (1350)
...|.
T Consensus 229 ~~~~~ 233 (351)
T PRK11432 229 ASRFM 233 (351)
T ss_pred CchHH
Confidence 55443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=400.37 Aligned_cols=219 Identities=30% Similarity=0.542 Sum_probs=192.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++..++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 23699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||||++.+|. .|++|||.++.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998742 122 234667788888877766554 479999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|+|||||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+ |
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~-p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK-P 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC-C
Confidence 99999999999999999999999999999998653 7999999999998865 999999999999999999999886 5
Q ss_pred CchhH
Q 000689 1312 DGCYA 1316 (1350)
Q Consensus 1312 ~g~y~ 1316 (1350)
...|.
T Consensus 227 ~~~~~ 231 (356)
T PRK11650 227 ASTFV 231 (356)
T ss_pred ccHHH
Confidence 55554
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=389.94 Aligned_cols=221 Identities=33% Similarity=0.527 Sum_probs=187.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 58999999999742223599999999999999999999999999999999999999999999999999887887888999
Q ss_pred EEEccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|||+|+|. ++..||+|||.++... .+.++..+. +.+.+..+ |++........+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 5567999999987432 222222111 12223333 5555556667899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999998853 8999999999999877999999999999999999988754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=401.04 Aligned_cols=223 Identities=34% Similarity=0.569 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR 1158 (1350)
|+++||+++|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
++|+||||+|.+|. .|++||+.++.. ..+. +++.+.++..++.++. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999886 699999986521 1222 2344555555554433 3344679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+++|+||||||||++||+.+...+.+.|++..+ |+|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 8999999999999876 99999999999999999999987
Q ss_pred cCCCchhHH
Q 000689 1309 NNPDGCYAR 1317 (1350)
Q Consensus 1309 ~~~~g~y~~ 1317 (1350)
. +...+.+
T Consensus 231 ~-~~~~~~~ 238 (343)
T PRK11153 231 H-PKHPLTR 238 (343)
T ss_pred C-CCcHHHH
Confidence 6 3333433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=391.52 Aligned_cols=221 Identities=28% Similarity=0.495 Sum_probs=185.8
Q ss_pred eEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC----CCHH
Q 000689 427 LIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS----LKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~----~~~~ 500 (1350)
+|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 489999999997321 1359999999999999999999999999999999999999999999999999863 3356
Q ss_pred HHhccEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHH
Q 000689 501 WLRQQIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri 575 (1350)
.+|+.+|||+|+| .+|..|+.||+.|+... .+.++..+. +.+.+..+ |+. ......+.+||||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV--GLADEFWEKSPFELSGGQMRRV 153 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhccCCcccCCHHHHHHH
Confidence 6888999999998 78889999999987432 222222211 12233333 443 345677889999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHh
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 154 aiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999998875 4899999999999885 599999999999999999999875
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 234 ~ 234 (288)
T PRK13643 234 E 234 (288)
T ss_pred C
Confidence 3
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=382.92 Aligned_cols=218 Identities=29% Similarity=0.494 Sum_probs=186.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEECCeeCCCCCHHHHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD---PTSGQVLLDGHDIKSLKLRWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~i~g~~~~~~~~~~~r 503 (1350)
.|+++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999974 359999999999999999999999999999999999985 6999999999999888777888
Q ss_pred ccEEEEccCCCcccccHHHHhhcCCCCC----C----HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHH
Q 000689 504 QQIGLVSQEPALFATTIKENILLGRPDA----D----LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~----~----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
++++|+||++.+|+.|++||+.++.... . .+++.++++..++.++ +.+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE-------VKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChh-------hhHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998763210 0 1112222232222221 12345667889999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988779999999999998865 999999999999999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=391.80 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC--HHHhh
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN--LKSLR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~--l~~lR 1158 (1350)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEccCC--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1159 RHMAIVPQEP--CLFASTIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 ~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
++|+||||+| .+|..|++|||.++.. ..++++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999987532 234333 44555555553 01223445578999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+|||||+.+|+||||||||++||+.+...+.+.|+++.+ |+|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 899999999999985 59999999999999999999987
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=380.94 Aligned_cols=213 Identities=36% Similarity=0.594 Sum_probs=178.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEECCeeCCCCC--HH
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY-----DPTSGQVLLDGHDIKSLK--LR 500 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~i~g~~~~~~~--~~ 500 (1350)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999987766 55
Q ss_pred HHhccEEEEccCCCcccccHHHHhhcCCCCC---CHHHHHHHHHHhchHHHHhcCCCCccchhcCC--CCCCChHHHHHH
Q 000689 501 WLRQQIGLVSQEPALFATTIKENILLGRPDA---DLNEIEEAARVANAYSFIIKLPDGFDTQVRER--GVQLSGGQKQRI 575 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~--g~~LSgGqkqri 575 (1350)
.+|++++|++|++.+|..|++||+.++.... ..++..+ .+.+.+..+ |++...... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6788999999999999779999998763211 1111111 112223333 444334444 579999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999988655899999999999865 99999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=388.74 Aligned_cols=213 Identities=32% Similarity=0.536 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEP--CLFASTIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp--~LF~gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+||||+| .+|..|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6788999999987532 122 245677777888876655544 47999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHh
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|||+++|++|||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+. .||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999874 4899999999999985 49999999999999999997653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=400.05 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3689999999999999999999999999999999999999999999999999887664 6789
Q ss_pred EEEccCCccCc-ccHHHHhccCCCC--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHES--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||+|++.+|. .|++||+.|+... .+ ++.+.++++..++.++.. ....+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999986421 22 234555666666555443 445689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|++||||||||+||..+.+.+.+.|++..+ |.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.++ |
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999998653 7999999999999865 999999999999999999999986 5
Q ss_pred Cchh
Q 000689 1312 DGCY 1315 (1350)
Q Consensus 1312 ~g~y 1315 (1350)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 6555
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=388.91 Aligned_cols=220 Identities=31% Similarity=0.541 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC--HHHHh
Q 000689 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK--LRWLR 503 (1350)
Q Consensus 428 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~--~~~~r 503 (1350)
|+++||+|+|+... .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999997654 35678
Q ss_pred ccEEEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCcc--chhcCCCCCCChHHHHHHHH
Q 000689 504 QQIGLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFD--TQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 504 ~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGqkqri~i 577 (1350)
++||||||+| .+|+.|++|||.++.. ..+.++..+.+ .+.+..+ |+. +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788899999998632 22333332221 2223333 443 45677788999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998853 899999999999985 5999999999999999999988653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=398.93 Aligned_cols=219 Identities=33% Similarity=0.530 Sum_probs=186.3
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 46999999999963 3589999999999999999999999999999999999999999999999999876654 468
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
||||+|++.||+. ||+|||.|+... .+..+..+. +.+.+..+ |++......+.+|||||||||+|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-----VMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999965 999999997531 122222111 11222222 5555566677899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++.
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999998753 8999999999999765 99999999999999999999988753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=381.88 Aligned_cols=222 Identities=33% Similarity=0.516 Sum_probs=187.8
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-HhccE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQI 506 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 506 (1350)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 35999999999999999999999999999999999999999999999999998877654 35679
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCCHHHH-------HHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDADLNEI-------EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~-------~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
+||+|++.+|.. |++||+.++........+ ........+.+.+..+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999886432110000 0011112234555555 777777888899999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998875 68999999999999876 999999999999999999988643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=398.63 Aligned_cols=207 Identities=31% Similarity=0.523 Sum_probs=182.3
Q ss_pred CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh----hcccEEEccCCccCc-
Q 000689 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFA- 1172 (1350)
Q Consensus 1098 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l----R~~i~~VpQdp~LF~- 1172 (1350)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.|+..++...+ |++++||||++.||+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 368999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000689 1173 STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLD 1246 (1350)
Q Consensus 1173 gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLD 1246 (1350)
.|++|||.++.. ..+ .+++.++++.+++.++.... ..+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987532 112 34566777777776665444 4579999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhhcCCCchhH
Q 000689 1247 EATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 1316 (1350)
Q Consensus 1247 EaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~ 1316 (1350)
||||+||+.+.+.+++.+.+.. .|+|+|+|||+++.+. .||||++|++|++++.|+|++++++ +...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~-p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN-PANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC-cccHHH
Confidence 9999999999999999999864 3899999999999875 4999999999999999999999976 444443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=383.13 Aligned_cols=224 Identities=29% Similarity=0.491 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3699999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCC---CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHES---AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~---~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++||||+|.+|..|++|||.++... .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999875311 11 33456666666664333 223444 4567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhcCCCchhH
Q 000689 1307 LKNNPDGCYA 1316 (1350)
Q Consensus 1307 l~~~~~g~y~ 1316 (1350)
.+. +.-.|.
T Consensus 237 ~~~-~~~~~~ 245 (254)
T PRK14273 237 FFN-PKNTKT 245 (254)
T ss_pred HhC-CCChHH
Confidence 865 344443
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=378.58 Aligned_cols=216 Identities=35% Similarity=0.580 Sum_probs=186.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
+|++|++.+|+.|++||+.++.......+ . .+.+.+..+ |++ ......+.+||||||||++||||++.+|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-~------~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-V------DVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-H------HHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987643211110 1 122333333 443 3456678899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999875 38999999999999875 999999999999999999999865
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=384.37 Aligned_cols=218 Identities=31% Similarity=0.535 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999963 369999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--C-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--S-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||++.+|..|++||+.++.. . ..++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 123456667777777554322 23455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 865
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=389.73 Aligned_cols=216 Identities=25% Similarity=0.506 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC----CCHHH
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK----YNLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~----~~l~~ 1156 (1350)
|+|+||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcccEEEccCC--ccCcccHHHHhccCCCC--CCHHH----HHHHHHHhccH-HHHhcCCCCccccccCCCCCCChhHH
Q 000689 1157 LRRHMAIVPQEP--CLFASTIYENIAYGHES--ATESE----IIEAARLANAD-KFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1157 lR~~i~~VpQdp--~LF~gTIreNL~~~~~~--~td~e----i~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
+|++++||+|+| .+|..|+.||+.++... .+.++ +.++++..++. ++ ......+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-----------WEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------ccCCcccCCHHHH
Confidence 899999999998 78999999999876321 23332 44445555552 22 2344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+. .||||++|++|+++++|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 4899999999999885 599999999999999999999
Q ss_pred Hhhc
Q 000689 1306 LLKN 1309 (1350)
Q Consensus 1306 Ll~~ 1309 (1350)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=381.71 Aligned_cols=222 Identities=31% Similarity=0.543 Sum_probs=189.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----ccEEEECCccCCCC--CHH
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDIRKY--NLK 1155 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~~--~l~ 1155 (1350)
|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999643 5999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HhhcccEEEccCCccCcccHHHHhccCCC--C-CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHE--S-AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~-~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
.+|++++||||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 12 234566666777653331 1233445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 9999999999999999999998
Q ss_pred hcCCCchh
Q 000689 1308 KNNPDGCY 1315 (1350)
Q Consensus 1308 ~~~~~g~y 1315 (1350)
.. +...+
T Consensus 232 ~~-~~~~~ 238 (247)
T TIGR00972 232 TN-PKEKR 238 (247)
T ss_pred hC-CCChH
Confidence 65 34444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=382.66 Aligned_cols=217 Identities=28% Similarity=0.516 Sum_probs=184.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh-hccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL-RRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l-R~~i 1161 (1350)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 369999999999999999999999999999999999999999999999999988876554 5779
Q ss_pred EEEccCCccCcc-cHHHHhccCCCCCC------------HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHESAT------------ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~~t------------d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
+||||+|.+|.+ |++||+.++..... .++. ...++++++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA-----RERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHH-----HHHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 99999987532110 1111 11223444443 4554555666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999865 68999999999999966 999999999999999999998
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+..
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=390.63 Aligned_cols=220 Identities=27% Similarity=0.513 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC----CHHH
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY----NLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~----~l~~ 1156 (1350)
|+++||+++|+..+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 23699999999999999999999999999999999999999999999999999653 3467
Q ss_pred hhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHHHHHHHHHhccHHHHhcCCCCccc-cccCCCCCCChhHHHHHH
Q 000689 1157 LRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESEIIEAARLANADKFISSLPDGYKT-FVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1157 lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQrla 1231 (1350)
+|++|+||||+| .+|..|++|||.++.. ..+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 5888899999987632 2343333221 12333333 5553 334567789999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+. .||||++|++|+|++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999985 599999999999999999999876
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 5
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=397.30 Aligned_cols=219 Identities=29% Similarity=0.468 Sum_probs=188.5
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEECCeeCCCCCHHHH
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS--GQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~i~g~~~~~~~~~~~ 502 (1350)
.|.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 467999999999974 359999999999999999999999999999999999999999 999999999977655 3
Q ss_pred hccEEEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
++.||||+|++.+|.. ||+|||.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 5689999999999966 999999987431 22222221 122333333 6666677788899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI---GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 7899999999999865 9999999999999999999998764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=383.36 Aligned_cols=220 Identities=28% Similarity=0.526 Sum_probs=190.5
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--C
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--Y 1152 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~ 1152 (1350)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999964 369999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHhhcccEEEccCCccCcccHHHHhccCCC---CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChh
Q 000689 1153 NLKSLRRHMAIVPQEPCLFASTIYENIAYGHE---SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225 (1350)
Q Consensus 1153 ~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~---~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1225 (1350)
+...+|++++|+||+|.+|..|+++|+.++.. ..+ +++++++++..++.+.+. ....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56778999999999999999999999986532 122 234666777776643322 2344556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChh
Q 000689 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304 (1350)
Q Consensus 1226 QrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~ 1304 (1350)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000689 1305 HLLKN 1309 (1350)
Q Consensus 1305 eLl~~ 1309 (1350)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=386.59 Aligned_cols=217 Identities=29% Similarity=0.480 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEP--CLFASTIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp--~LF~gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+|+||+| .++..|+.|||.++.. ..++++ +.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778899999986522 233333 4566677777665443 3457999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998753 8999999999999988999999999999999999999865
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=381.76 Aligned_cols=212 Identities=35% Similarity=0.551 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC---HHHhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~---l~~lR~ 1159 (1350)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999641 36999999999999999999999999999999999999999999999999998876 567888
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHES--------------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~~--------------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
+++|+||++.+|. .|++||+.++... ..++++.++++..++.+ .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999998886 6999999864311 11223444555555443 33445678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-hcCEEEEEeCCeEEEec
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~G 1301 (1350)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3899999999999998 49999999999999999
Q ss_pred ChhHHh
Q 000689 1302 SHSHLL 1307 (1350)
Q Consensus 1302 t~~eLl 1307 (1350)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=396.22 Aligned_cols=217 Identities=33% Similarity=0.519 Sum_probs=185.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 4899999999974 359999999999999999999999999999999999999999999999999977654 45689
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC------CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD------ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|||+|++.+|+. |++|||.|+... .+.++..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999997431 12222211 112333333 5555566778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998753 7899999999999865 9999999999999999999998764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=380.79 Aligned_cols=211 Identities=30% Similarity=0.532 Sum_probs=181.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 369999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEccCCccCc-ccHHHHhccCCCC--C----C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHES--A----T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~~--~----t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
||||+|.+|. .|++||+.++... . + ++++.++++..++.++. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999886 5999999875321 1 1 12344555555554433 3334679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+++|++|||||||++||+++.+.+.+.|++..+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 99999999999999999999976
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=379.45 Aligned_cols=216 Identities=34% Similarity=0.529 Sum_probs=183.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3899999999974 369999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPDA------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
+||+|+|.+|. .|++||+.++.... +..+.. ..+.+.+..+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999886 59999999864211 111111 1123344444 5666667778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
||+.+|++|||||||++||+++.+.+.+.|.++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999998753 7999999999998765 999999999999999999998764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=388.05 Aligned_cols=220 Identities=32% Similarity=0.563 Sum_probs=188.0
Q ss_pred EEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC----CHHH
Q 000689 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL----KLRW 501 (1350)
Q Consensus 428 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~----~~~~ 501 (1350)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996422 23699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhccEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc-hhcCCCCCCChHHHHHHH
Q 000689 502 LRQQIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDT-QVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 502 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGqkqri~ 576 (1350)
+|++||||||+| .+|..|+.|||.++... .+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 888999999997 68888999999987422 233333221 23445554 7763 556788999999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHh
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999986 599999999999999999998876
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=387.01 Aligned_cols=216 Identities=30% Similarity=0.546 Sum_probs=191.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
-|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999643 24699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCC--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEP--CLFASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp--~LF~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+|+||+| .++..|++|||.++.. ..+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4677899999987532 1232 34666777777777666554 47999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+.+|+||||||||++||+.+...+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998763 8999999999999988999999999999999999998754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=399.86 Aligned_cols=222 Identities=24% Similarity=0.484 Sum_probs=196.1
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-CcccHHHHhccCCCC----------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1162 AIVPQEPCL-FASTIYENIAYGHES----------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1162 ~~VpQdp~L-F~gTIreNL~~~~~~----------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
+||||++.+ |+.|++||+.++... .+.+.+.++++..++.++..+ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 678999999876421 123457788888888776543 2357999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
+|||||+++|+||||||||++||+.+...+++.|+++. +|+|+|+++|+++.+. .||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 5889999999999995 499999999999999999999985
Q ss_pred cCCCchhHHHHH
Q 000689 1309 NNPDGCYARMIQ 1320 (1350)
Q Consensus 1309 ~~~~g~y~~l~~ 1320 (1350)
. ....+++.
T Consensus 229 ~---~~l~~~~~ 237 (402)
T PRK09536 229 A---DTLRAAFD 237 (402)
T ss_pred c---HHHHHHhC
Confidence 4 34555553
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=381.20 Aligned_cols=220 Identities=30% Similarity=0.504 Sum_probs=184.8
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~--~~ 498 (1350)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999997 48999999998853 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD---ADL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|++++||+|++.+|+.|++|||.++... ... +.+.++++..++.+. +.......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHH
Confidence 45678899999999999989999999986421 111 122233333332211 1223455678999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred HHhcc
Q 000689 651 LIAKG 655 (1350)
Q Consensus 651 l~~~~ 655 (1350)
+..++
T Consensus 236 ~~~~~ 240 (254)
T PRK14273 236 LFFNP 240 (254)
T ss_pred HHhCC
Confidence 98653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=376.11 Aligned_cols=211 Identities=27% Similarity=0.480 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEccCCccC-cccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLF-ASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF-~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
||||+|.+| ..|+++|+.++.. ..+. +++.++++..++.+.. + ....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------N----KRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------h----ChhhhCCHHHHHHHHHHHH
Confidence 999999988 5799999976421 1122 3345555555554433 2 2335799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998778999999999999865 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=380.55 Aligned_cols=220 Identities=31% Similarity=0.549 Sum_probs=186.9
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--C
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--L 497 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~ 497 (1350)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999973 359999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhccEEEEccCCCcccccHHHHhhcCCC---CCCHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChH
Q 000689 498 KLRWLRQQIGLVSQEPALFATTIKENILLGRP---DADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~---~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 570 (1350)
+...+|++|+|++|++.+|+.|++||+.++.. ..+.++ +.++++..++ +.++.+..++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL-------WNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHhcCCCCCCHH
Confidence 55678889999999999999999999987632 122222 2223333222 112234567788899999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||||++|||||+.+|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778899999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000689 650 ELIAK 654 (1350)
Q Consensus 650 ~l~~~ 654 (1350)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98765
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=379.43 Aligned_cols=218 Identities=32% Similarity=0.541 Sum_probs=184.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~i~g~~~~~~--~~ 499 (1350)
+|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999974 35999999999999999999999999999999999999998 99999999998753 45
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC---CCHHHHHHHHHHhchHHHHhcCCCCcc----chhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD---ADLNEIEEAARVANAYSFIIKLPDGFD----TQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGqk 572 (1350)
..+|+.++|+||++.+|+.|++||+.++... .+.++..+. +.+.+..+ |+. ......+.+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI-----VEESLKKA--ALWDEVKDRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCcchhhHhhCCcccCCHHHH
Confidence 5678899999999999999999999875321 112221111 12223333 443 456677889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=384.74 Aligned_cols=216 Identities=31% Similarity=0.546 Sum_probs=183.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++|+|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999963 23599999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|||+|+| .++..|++||+.++.. ..+.++..+. +.+.+..+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5788899999998632 1222221111 12222222 4444455566789999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHH
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l 651 (1350)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999875 4899999999999985 5999999999999999998654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=396.02 Aligned_cols=217 Identities=28% Similarity=0.518 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+. .|++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999964 369999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCccCc-ccHHHHhccCCC------CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHE------SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~------~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+. ...||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHH
Confidence 99999999997 499999998632 112 23455666666665554433 357999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+|||||+++|++||||||||+||+.+...+.+.|++..+ |+|+|+|||+++.+.. ||||++|++|+|++.|++++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999766 9999999999999999999998
Q ss_pred hcCCCchh
Q 000689 1308 KNNPDGCY 1315 (1350)
Q Consensus 1308 ~~~~~g~y 1315 (1350)
.+ |...|
T Consensus 226 ~~-p~~~~ 232 (353)
T PRK10851 226 RE-PATRF 232 (353)
T ss_pred hC-ccchH
Confidence 76 55444
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=381.21 Aligned_cols=218 Identities=31% Similarity=0.551 Sum_probs=184.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~~ 499 (1350)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 359999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+|++++|++|++.+|+.|++||+.++... . .. +++.++++..++.+. +.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHH
Confidence 5778899999999999989999999876311 1 11 122333333333221 12345677889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 765
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=380.17 Aligned_cols=212 Identities=31% Similarity=0.521 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~lR~ 1159 (1350)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2369999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHES--------------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~~--------------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
+++||||++.+|. .|++||+.++... ..++++.++++..++.++ ......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 9999999998886 6999999865321 112234455555555433 3344568999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 37999999999999865 9999999999999999
Q ss_pred ChhHHh
Q 000689 1302 SHSHLL 1307 (1350)
Q Consensus 1302 t~~eLl 1307 (1350)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=382.42 Aligned_cols=218 Identities=29% Similarity=0.453 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCC--CCCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIR--KYNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~--~~~l 1154 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHhhcccEEEccCCccCcc-cHHHHhccCCC--C--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChh
Q 000689 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHE--S--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~g-TIreNL~~~~~--~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1225 (1350)
..+|++++|+||+|.+|.+ |++||+.++.. . .. ++++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 1 11 234556666666543332 1234456789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChh
Q 000689 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304 (1350)
Q Consensus 1226 QrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~ 1304 (1350)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000689 1305 HLLKN 1309 (1350)
Q Consensus 1305 eLl~~ 1309 (1350)
++++.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 99865
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=387.44 Aligned_cols=220 Identities=32% Similarity=0.551 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC----CCHHH
Q 000689 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS----LKLRW 501 (1350)
Q Consensus 428 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~----~~~~~ 501 (1350)
|+++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhccEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHHH
Q 000689 502 LRQQIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 502 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri~ 576 (1350)
+|+.||||+|+| .+|+.|++|||.|+... .+.++..+. +.+.+..+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68888999999987432 233332221 12333333 554 3346677899999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999885 38999999999999865 99999999999999999998875
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=383.15 Aligned_cols=220 Identities=30% Similarity=0.503 Sum_probs=190.1
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--C
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--Y 1152 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~ 1152 (1350)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3699999999999999999999999999999999999975 89999999999865 3
Q ss_pred CHHHhhcccEEEccCCccCcccHHHHhccCCC--CC--C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1153 NLKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA--T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1153 ~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~--t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
+...+|++++|+||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. ......+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 56678899999999999998999999986421 11 1 234566777777754432 123445678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecCh
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+++++|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778899999999999965 899999999999999999
Q ss_pred hHHhhc
Q 000689 1304 SHLLKN 1309 (1350)
Q Consensus 1304 ~eLl~~ 1309 (1350)
++++..
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999865
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=375.42 Aligned_cols=217 Identities=26% Similarity=0.421 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh-hccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL-RRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l-R~~i 1161 (1350)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999964 369999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
+|+||++.+|.+ |++||+.++.......+..+.+ .++++.++ +++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998764322111111111 11122111 1222334455679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
++|||||||++||+++...+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 58999999999999866 99999999999999999988763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=385.90 Aligned_cols=219 Identities=35% Similarity=0.552 Sum_probs=185.7
Q ss_pred EEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh----hc
Q 000689 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL----RR 1159 (1350)
Q Consensus 1084 ~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l----R~ 1159 (1350)
.++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 368999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHE--SA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~--~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+++|+||+|.+|. .|++||+.++.. .. .++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999885 699999986421 11 1234666777777766655544 4799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||||+++|+||||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999874 37999999999999865 999999999999999999999875
Q ss_pred CCCchhHH
Q 000689 1310 NPDGCYAR 1317 (1350)
Q Consensus 1310 ~~~g~y~~ 1317 (1350)
+...|.+
T Consensus 252 -~~~~~~~ 258 (269)
T cd03294 252 -PANDYVR 258 (269)
T ss_pred -cCcHHHH
Confidence 3444543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.25 Aligned_cols=203 Identities=31% Similarity=0.561 Sum_probs=175.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---Hhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR~ 1159 (1350)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23699999999999999999999999999999999999999999999999999776543 4788
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCC------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHE------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+++|+||+|.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 599999986421 112345677777777766554433 4799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeE
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrI 1297 (1350)
||||+++|+||||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999864 48999999999999975 999999999985
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=396.33 Aligned_cols=218 Identities=31% Similarity=0.548 Sum_probs=189.9
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCc--cEEEECCccCCCCCHHHhh
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS--GRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~--G~I~iDG~di~~~~l~~lR 1158 (1350)
|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999964 369999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cccEEEccCCccCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
++|+||+|++.||.. |++|||.++.. ..+. +.+.++++..++.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999965 99999987632 1232 34556666666666554443 579999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS---GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~---g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|||||+++|++||||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+.. ||||+||++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988653 7899999999999865 9999999999999999999999
Q ss_pred hcCCCchh
Q 000689 1308 KNNPDGCY 1315 (1350)
Q Consensus 1308 ~~~~~g~y 1315 (1350)
.+ |...|
T Consensus 228 ~~-p~~~~ 234 (362)
T TIGR03258 228 DA-PADGF 234 (362)
T ss_pred hC-cCcHH
Confidence 76 55555
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=389.16 Aligned_cols=231 Identities=29% Similarity=0.456 Sum_probs=190.4
Q ss_pred eEEEEEEEEECCCCC----------CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC
Q 000689 427 LIELKHVDFSYPSRP----------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS 496 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~ 496 (1350)
.|+++|++++|+.+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 699999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhccEEEEccCC--Cccc-ccHHHHhhcCC----CCCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCC
Q 000689 497 LKLR---WLRQQIGLVSQEP--ALFA-TTIKENILLGR----PDADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGV 565 (1350)
Q Consensus 497 ~~~~---~~r~~i~~v~Q~~--~lf~-~ti~eNi~~g~----~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~ 565 (1350)
++.. .+|++|+||+|+| .|++ .||.|||.++. +..+.++..+.+ .+.+..+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 8754 3677899999998 4774 69999997642 122333332222 2233333 442 34567788
Q ss_pred CCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000689 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642 (1350)
Q Consensus 566 ~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i 642 (1350)
+|||||||||+|||||+.+|++||+||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998853 8999999999999976 999999999999
Q ss_pred EEecChHHHHhccCCcHHHHHH
Q 000689 643 SEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 643 ~~~g~~~~l~~~~~~~~y~~l~ 664 (1350)
++.|+.++++.++.+.+.+.++
T Consensus 241 ve~g~~~~i~~~~~~py~~~l~ 262 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKALM 262 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHHHH
Confidence 9999999998764333333344
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=376.61 Aligned_cols=220 Identities=26% Similarity=0.462 Sum_probs=196.5
Q ss_pred CCCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhh
Q 000689 1079 LRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1079 ~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR 1158 (1350)
..+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 3699999999999999999999999999999999999999999999998
Q ss_pred cccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1159 RHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
+++|+||++.+|.+|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999987643 34445667778889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHH-HHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhcCCCchhHH
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~-L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~ 1317 (1350)
+|+||||||||++||+++...+.+. +++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|..
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~~~ 254 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL--RPDFSS 254 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc--chHHHH
Confidence 9999999999999999999988875 4555668999999999999988999999999999999999999865 345654
Q ss_pred HH
Q 000689 1318 MI 1319 (1350)
Q Consensus 1318 l~ 1319 (1350)
.+
T Consensus 255 ~~ 256 (282)
T cd03291 255 KL 256 (282)
T ss_pred HH
Confidence 44
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=365.17 Aligned_cols=233 Identities=35% Similarity=0.523 Sum_probs=194.2
Q ss_pred eEEEEEEEEECCCCCC---------------------CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000689 427 LIELKHVDFSYPSRPE---------------------VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 485 (1350)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999998875421 1237899999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHHh----ccEEEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc
Q 000689 486 QVLLDGHDIKSLKLRWLR----QQIGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDT 558 (1350)
Q Consensus 486 ~i~i~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t 558 (1350)
+|+++|.|+..++.+.|| +++++|||+..||+- ||.||..||..- ...+|-++ .+.+.++.. |++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~-----~a~~~l~~V--gL~~ 156 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREE-----RALEALELV--GLEG 156 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHH-----HHHHHHHHc--Cchh
Confidence 999999999999987654 579999999999865 999999999752 22222211 122333333 5555
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEE
Q 000689 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIR-KADVVA 635 (1350)
Q Consensus 559 ~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~ 635 (1350)
.-...+.+||||+||||.|||||..||+||++|||+|||||--+..+|+.|.++. -+||+|+|||+|++.- -.|||.
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 5566678999999999999999999999999999999999999999999998775 3799999999999875 599999
Q ss_pred EEeCCEEEEecChHHHHhccCCcHHHHHHHH
Q 000689 636 VLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666 (1350)
Q Consensus 636 vl~~G~i~~~g~~~~l~~~~~~~~y~~l~~~ 666 (1350)
.|++|+|+..||++|++.++.+.+-+.+++.
T Consensus 237 imkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred EecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 9999999999999999998766555666543
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=377.72 Aligned_cols=218 Identities=34% Similarity=0.594 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
++++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 35999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc--hhcCCCCCCChHHHHHHHHHHHhc
Q 000689 508 LVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDT--QVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 508 ~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|++|++.+|. .|++||+.++... .+.++. ...+.+.+..+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875321 111111 11223444444 5553 566778899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
++|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999875 38999999999998765 999999999999999999988754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=395.17 Aligned_cols=217 Identities=37% Similarity=0.633 Sum_probs=191.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.++++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||+|++.||.. |++|||.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998642 122 234667777778877766655 579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|++||||||||+||..+...+.+.|++..+ |.|+|+|||++..+.. ||||++|++|+|++.|++++++.+ |
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~-p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE-P 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999998753 8999999999999755 999999999999999999999987 5
Q ss_pred Cchh
Q 000689 1312 DGCY 1315 (1350)
Q Consensus 1312 ~g~y 1315 (1350)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 5544
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=387.35 Aligned_cols=221 Identities=27% Similarity=0.487 Sum_probs=184.9
Q ss_pred eEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC--------
Q 000689 427 LIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS-------- 496 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~-------- 496 (1350)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhccEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCc
Q 000689 497 ----------------LKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGF 556 (1350)
Q Consensus 497 ----------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~ 556 (1350)
.+...+|+.||||+|+| .+|..||+|||.|+... .+.++..+. +.+.+..+ |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL 154 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GL 154 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CC
Confidence 13456788999999986 67888999999987432 233333221 12233333 56
Q ss_pred c-chhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCE
Q 000689 557 D-TQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIR-KADV 633 (1350)
Q Consensus 557 ~-t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~ 633 (1350)
+ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+. .||+
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 4 45677888999999999999999999999999999999999999999999998875 4899999999999875 5999
Q ss_pred EEEEeCCEEEEecChHHHHhc
Q 000689 634 VAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 634 i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|++|++|+|++.|+.+++...
T Consensus 235 v~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 235 TIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEEECCEEEEECCHHHHhcC
Confidence 999999999999999998754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=374.08 Aligned_cols=203 Identities=38% Similarity=0.620 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 577899
Q ss_pred EEccCCccCc-ccHHHHhccCCCC--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHES--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|. .|++||+.++... .+ ++++.++++..++.++... ...+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998886 6999999865221 11 2335556666665554433 335799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|+++|++|||||||++||+++.+.+.+.|++.. .|+|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999864 38999999999999865 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=385.78 Aligned_cols=215 Identities=26% Similarity=0.491 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCC--CCCHHHhhc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--KYNLKSLRR 1159 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~--~~~l~~lR~ 1159 (1350)
-|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ccEEEccCC--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1160 HMAIVPQEP--CLFASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1160 ~i~~VpQdp--~LF~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
+++|+||+| .+|+.|++||+.++.. ..+. +.+.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5788999999986432 1232 2345556666665443 3445689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
|||||+.+|+||||||||++||+.+...+.+.|++..+ |+|||++||+++.+. .||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 899999999999997 599999999999999999999876
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=378.66 Aligned_cols=216 Identities=33% Similarity=0.542 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 36999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 699999976421 112 123344444444331 012344567899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++++|++|||||||++||+.+...+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999999875 38999999999998765 999999999999999999999765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=376.47 Aligned_cols=216 Identities=33% Similarity=0.548 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---Hhh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR 1158 (1350)
|+++|++++|+.+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++.++... ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 89999999999997 699999986421 112 2345556666666544433 34679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
||||++++|++|||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 38999999999999866 99999999999999999998875
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=378.30 Aligned_cols=221 Identities=37% Similarity=0.585 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---HHHHhc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWLRQ 504 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~---~~~~r~ 504 (1350)
++++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 136999999999999999999999999999999999999999999999999998776 456788
Q ss_pred cEEEEccCCCccc-ccHHHHhhcCCCCCC--HHHH---HHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 505 QIGLVSQEPALFA-TTIKENILLGRPDAD--LNEI---EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~--~~~~---~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
.++||+|++.+|. .|++||+.++..... ...+ ........+.+.+..+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999998886 599999987642110 0000 0000111223344444 566666778889999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
|||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999874 38999999999999984 9999999999999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=387.55 Aligned_cols=217 Identities=28% Similarity=0.488 Sum_probs=184.2
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC----CCHHH
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK----YNLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~----~~l~~ 1156 (1350)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1157 LRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1157 lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
+|++++||||+| .+|..|++|||.++.. ..+.++ +.++++.+++++. .......+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6888999999987632 233333 3444455554321 123445679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+ |.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 8999999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000689 1306 LLKN 1309 (1350)
Q Consensus 1306 Ll~~ 1309 (1350)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=377.85 Aligned_cols=221 Identities=35% Similarity=0.569 Sum_probs=183.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH---HHHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL---RWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~---~~~r 503 (1350)
+|+++||+++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHH
Confidence 3789999999962 2369999999999999999999999999999999999999999999999999877654 3467
Q ss_pred ccEEEEccCCCccc-ccHHHHhhcCCCCCC--HHHH---HHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 504 QQIGLVSQEPALFA-TTIKENILLGRPDAD--LNEI---EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~--~~~~---~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
++++||+|++.+|. .|++||+.++..... .... ........+.+.+..+ |++......+.+||||||||++|
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 88999999998886 599999987642110 0000 0000111223344444 66666677888999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999874 37999999999999865 999999999999999999886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=366.24 Aligned_cols=200 Identities=36% Similarity=0.563 Sum_probs=182.3
Q ss_pred EEEEEEEEECCCCCC--CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1083 VELKHVDFSYPSRPD--IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
|+++||+++|++..+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1161 MAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1161 i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
|+|+||+|.+|++|++||+.++.. .++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4566778888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHH-HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCe
Q 000689 1241 EIMLLDEATSALDAESERSVQE-ALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGK 1296 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~-~L~~~~-~g~TvI~IaHRlsti~~~DrI~Vl~~Gr 1296 (1350)
+++||||||++||+++.+.+.+ .+++.. +|+|||++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 566553 4799999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=376.23 Aligned_cols=216 Identities=27% Similarity=0.521 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCcc-CcccHHHHhccCCC--CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1163 IVPQEPCL-FASTIYENIAYGHE--SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1163 ~VpQdp~L-F~gTIreNL~~~~~--~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
|+||++.+ +..|+++|+.++.. ..+.++..+ .+.+++..+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56799999986431 122222111 122333333 444445556678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|+||||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999988999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=386.87 Aligned_cols=216 Identities=25% Similarity=0.455 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC---------
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK--------- 1151 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~--------- 1151 (1350)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997432 2369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHhhcccEEEccCC--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHhccH-HHHhcC
Q 000689 1152 ---------------YNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHE--SATES----EIIEAARLANAD-KFISSL 1207 (1350)
Q Consensus 1152 ---------------~~l~~lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~----ei~~al~~a~l~-~~I~~l 1207 (1350)
.+...+|++||||||+| .+|..|++|||.++.. ..+.+ ++.++++..++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13467889999999987 6888999999987632 23333 345555555553 22
Q ss_pred CCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-h
Q 000689 1208 PDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-N 1285 (1350)
Q Consensus 1208 p~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~ 1285 (1350)
......+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .|+|||+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 334456899999999999999999999999999999999999999999998864 4899999999999875 4
Q ss_pred cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1286 AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1286 ~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||||++|++|++++.|+++++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=379.82 Aligned_cols=226 Identities=28% Similarity=0.441 Sum_probs=191.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCCCHHH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~~l~~ 1156 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3699999999999999999999999999999999999974 6999999999998888888
Q ss_pred hhcccEEEccCCccC-cccHHHHhccCCC--C--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1157 LRRHMAIVPQEPCLF-ASTIYENIAYGHE--S--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1157 lR~~i~~VpQdp~LF-~gTIreNL~~~~~--~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
+|++|+|+||+|.+| ..|++||+.++.. . .. ++++.++++..++.+.+.. .++ ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHH
Confidence 999999999999755 6799999986431 0 01 2356677777776543321 223 34467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999986 4999999999999999999999
Q ss_pred hhcCCCchhHHH
Q 000689 1307 LKNNPDGCYARM 1318 (1350)
Q Consensus 1307 l~~~~~g~y~~l 1318 (1350)
.+. +...+.+.
T Consensus 233 ~~~-~~~~~~~~ 243 (250)
T PRK14247 233 FTN-PRHELTEK 243 (250)
T ss_pred HcC-CccHHHHH
Confidence 865 34444443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=376.04 Aligned_cols=220 Identities=38% Similarity=0.575 Sum_probs=185.9
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HH
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WL 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~ 502 (1350)
+|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 378999999997431 12699999999999999999999999999999999999999999999999998776543 34
Q ss_pred hccEEEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
++.++|++|++.+|. .|++||+.++... .+..+. ...+.+.+..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIAR 153 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 778999999999997 5999999875321 111111 11223445555 6666667778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999875 3 8999999999999865 99999999999999999988764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=395.00 Aligned_cols=214 Identities=28% Similarity=0.508 Sum_probs=187.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999973 4699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEccCCCc-ccccHHHHhhcCCCCC-------C---HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHH
Q 000689 507 GLVSQEPAL-FATTIKENILLGRPDA-------D---LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 507 ~~v~Q~~~l-f~~ti~eNi~~g~~~~-------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
|||+|++.+ |+.|++||+.+++... . .+.+.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 5679999999875311 1 11223333333 444445566789999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+|||||+++|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999885 58999999999999965 99999999999999999999875
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=373.04 Aligned_cols=216 Identities=33% Similarity=0.517 Sum_probs=181.3
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH-hccE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL-RQQI 506 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 506 (1350)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999987776544 6789
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
+|++|++.+|.. |++||+.++.......+..+ +...+.+.+. +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~----~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA--RLERVYELFP----RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH--HHHHHHHHHH----hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 99999998754221111111 1111222221 2334455677889999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 58999999999999865 9999999999999999988775
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=365.38 Aligned_cols=203 Identities=37% Similarity=0.586 Sum_probs=180.2
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
+.|+++|++++|+.. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 2369999999999999999999999999999999999999999999999999988888888899
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
|+||+|+|.+|++|++||+.+... .+.+++.++++ +++++.+||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999987542 23333322221 34567899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEecCh
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999978999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=390.04 Aligned_cols=226 Identities=27% Similarity=0.403 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCC----------CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC
Q 000689 1082 EVELKHVDFSYPSRP----------DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK 1151 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1151 (1350)
-|+++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996421 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HhhcccEEEccCC--ccC-cccHHHHhccCC----CCCCHHHH----HHHHHHhccHHHHhcCCCCccccccC
Q 000689 1152 YNLK---SLRRHMAIVPQEP--CLF-ASTIYENIAYGH----ESATESEI----IEAARLANADKFISSLPDGYKTFVGE 1217 (1350)
Q Consensus 1152 ~~l~---~lR~~i~~VpQdp--~LF-~gTIreNL~~~~----~~~td~ei----~~al~~a~l~~~I~~lp~Gldt~vge 1217 (1350)
++.. .+|++|+||+|+| .|| ..||.+||.++. +..+.++. .++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 3678999999999 477 479999987431 12343333 34444554421 11234
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeC
Q 000689 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDD 1294 (1350)
Q Consensus 1218 ~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~ 1294 (1350)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ |.|+|+|||+++.+.. ||||+||.+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998753 8999999999999976 999999999
Q ss_pred CeEEEecChhHHhhcCCCchhHHH
Q 000689 1295 GKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1295 GrIvE~Gt~~eLl~~~~~g~y~~l 1318 (1350)
|+|+|.|++++++++ +...|.+.
T Consensus 238 G~ive~g~~~~i~~~-~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHN-PLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcC-CCCHHHHH
Confidence 999999999999976 55667663
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=393.91 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=187.1
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhc
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ 504 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~ 504 (1350)
...|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++ .++
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQR 91 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHC
Confidence 446999999999963 359999999999999999999999999999999999999999999999999987654 467
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
.||||+|++.||+. ||+|||.|+... .+..+..+ .+.+.++.+ |+.........+|||||||||+|||||
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999976 999999997431 22222221 112333333 555566677789999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998888764 38999999999999765 9999999999999999999998764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=396.15 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=185.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876543 4679
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.+|.. |++|||.|+... .+.++..+ .+.+.+..+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999965 999999987431 22222111 122333344 56666667778999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999988743 8999999999998865 9999999999999999999998754
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=379.98 Aligned_cols=221 Identities=30% Similarity=0.509 Sum_probs=185.9
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS-- 496 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~-- 496 (1350)
..+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999973 3699999999999999999999999999999999999975 89999999999864
Q ss_pred CCHHHHhccEEEEccCCCcccccHHHHhhcCCC--CC--CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCC
Q 000689 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRP--DA--DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLS 568 (1350)
Q Consensus 497 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~--~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 568 (1350)
.+...+|+.++||+|++.+|+.|++||+.++.. .. ... ++.++++..++.++ +.+..+..+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE-------VKDRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCC
Confidence 345667889999999999998899999987531 10 111 12223333222211 1234566788999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778899999999999965 99999999999999999
Q ss_pred hHHHHhc
Q 000689 648 HDELIAK 654 (1350)
Q Consensus 648 ~~~l~~~ 654 (1350)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=396.26 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+. ..+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999965 99999987632 122 23456667777766554433 3579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|++||||||||+||+.+.+.+.+.|++..+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++... |
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~-p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999998653 8899999999998865 999999999999999999999876 4
Q ss_pred Cchh
Q 000689 1312 DGCY 1315 (1350)
Q Consensus 1312 ~g~y 1315 (1350)
...|
T Consensus 226 ~~~~ 229 (369)
T PRK11000 226 ANRF 229 (369)
T ss_pred ccHH
Confidence 5444
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=378.59 Aligned_cols=213 Identities=29% Similarity=0.501 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC---------
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN--------- 1153 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~--------- 1153 (1350)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999964 36999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHhhcccEEEccCCccCc-ccHHHHhccCCC---CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCC
Q 000689 1154 ----LKSLRRHMAIVPQEPCLFA-STIYENIAYGHE---SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221 (1350)
Q Consensus 1154 ----l~~lR~~i~~VpQdp~LF~-gTIreNL~~~~~---~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1221 (1350)
...+|++++|++|++.+|. .|++||+.++.. ... ++++.++++..++.++.. .....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 2467889999999998885 799999986421 112 233455555555554443 34467
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEE
Q 000689 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298 (1350)
Q Consensus 1222 LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv 1298 (1350)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ |+|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999865 9999999999999
Q ss_pred EecChhHHhhc
Q 000689 1299 ELGSHSHLLKN 1309 (1350)
Q Consensus 1299 E~Gt~~eLl~~ 1309 (1350)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=383.53 Aligned_cols=217 Identities=30% Similarity=0.494 Sum_probs=189.8
Q ss_pred cEEEEEEEEECCCCC---CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC-HHHh
Q 000689 1082 EVELKHVDFSYPSRP---DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN-LKSL 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~-l~~l 1157 (1350)
-|+++|++++|+... +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEccCCc--cCcccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1158 RRHMAIVPQEPC--LFASTIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1158 R~~i~~VpQdp~--LF~gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677799999987532 122 345677777778877665543 5799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
++|||||+++|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999999889999999999999999999997
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=372.21 Aligned_cols=215 Identities=28% Similarity=0.504 Sum_probs=180.6
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++||+++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999986543 56678899
Q ss_pred EEccCCCcc-cccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALF-ATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf-~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
||+|++.+| ..|++||+.++.. ....++..+ .+.+.+..+ |+.........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 5699999987421 112211111 122333333 444445566678999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999998778999999999999865 999999999999999998775
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=379.43 Aligned_cols=223 Identities=29% Similarity=0.493 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~--~l 1154 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
..+|+.++|+||+|.+|..|++||+.++.. ..+. +++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 1222 2345566666554321 11223445679999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999998
Q ss_pred hcCCCchh
Q 000689 1308 KNNPDGCY 1315 (1350)
Q Consensus 1308 ~~~~~g~y 1315 (1350)
.. +...|
T Consensus 242 ~~-~~~~~ 248 (258)
T PRK14268 242 HN-PREKS 248 (258)
T ss_pred cC-CCCHH
Confidence 65 34444
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=386.43 Aligned_cols=218 Identities=27% Similarity=0.465 Sum_probs=183.1
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 46999999999963 36999999999999999999999999999999999999999999999999987654 457889
Q ss_pred EEEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 506 IGLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 506 i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
||||||++.++. .|++||+.|... ..+..+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999886 599999986322 1222222211 12222222 3333344455689999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999885 48999999999999976 999999999999999999998754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=380.46 Aligned_cols=222 Identities=28% Similarity=0.491 Sum_probs=188.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCCCC--HH
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRKYN--LK 1155 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~~~--l~ 1155 (1350)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 369999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HhhcccEEEccCCccCcccHHHHhccCC--CC------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1156 SLRRHMAIVPQEPCLFASTIYENIAYGH--ES------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~gTIreNL~~~~--~~------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
.+|++++||||+|.+|.+|++||+.++. .+ ..++++.++++..++.+.+ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 6788999999999999999999998642 11 1123455666666664432 1233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hhcCCCchh
Q 000689 1307 LKNNPDGCY 1315 (1350)
Q Consensus 1307 l~~~~~g~y 1315 (1350)
++. +...|
T Consensus 236 ~~~-~~~~~ 243 (251)
T PRK14244 236 FKN-PQSSK 243 (251)
T ss_pred hcC-CCChH
Confidence 876 45544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=371.69 Aligned_cols=208 Identities=32% Similarity=0.551 Sum_probs=172.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~r 503 (1350)
+|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 37899999999642 23599999999999999999999999999999999999999999999999998766543 467
Q ss_pred ccEEEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 504 QQIGLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
++++|++|++.+|. .|++||+.++... ...++..+ .+.+.+..+ |+.........+||||||||++||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANE-----RVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 4999999875321 11111111 122333333 45555556667999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 642 (1350)
|+.+|++|||||||++||+++.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998874 48999999999999875 999999999975
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=372.61 Aligned_cols=217 Identities=31% Similarity=0.514 Sum_probs=186.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i 76 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARL 76 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhE
Confidence 3789999999963 36999999999999999999999999999999999999999999999999987766544 4589
Q ss_pred EEEccCCCcc-cccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALF-ATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf-~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
+|++|++.++ ..|++||+.++... ...++.. ..+.+.+..+ |++......+.+||||||||++|||||++
T Consensus 77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999875 56999999875321 1222111 1233445555 67777778888999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999875 48999999999999988999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=374.57 Aligned_cols=210 Identities=28% Similarity=0.428 Sum_probs=178.8
Q ss_pred cEEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---h
Q 000689 1082 EVELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---L 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---l 1157 (1350)
-++++||+++|+.+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-cccEEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1158 R-RHMAIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1158 R-~~i~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
| ++++|+||+|.+|.. |++||+.++.. ... ++++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999998875 99999976311 112 2234555555554433 334456799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEEEecC
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt 1302 (1350)
++||||++.+|+||||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999999999999999999998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=380.77 Aligned_cols=218 Identities=28% Similarity=0.460 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 369999999999999999999999999999999999865 789999999999865 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC---CC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE---SA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~---~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|.+|++||+.++.. .. .++.+.++++..++.+.+ .........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 577889999999999999999999986421 11 123345555555553221 1223455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999998865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+..
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 865
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=383.03 Aligned_cols=219 Identities=26% Similarity=0.493 Sum_probs=186.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC--CCCHHHHhc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK--SLKLRWLRQ 504 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~--~~~~~~~r~ 504 (1350)
.|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 6999999999963 236999999999999999999999999999999999999999999999999984 334567888
Q ss_pred cEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 505 QIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 505 ~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
.+|||+|+| .+|+.|++||+.++... .+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57788999999875321 222222211 12223333 55556677788999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+.+|+||||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998853 899999999999987 5999999999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=379.70 Aligned_cols=219 Identities=31% Similarity=0.508 Sum_probs=187.9
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~ 1153 (1350)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999964 369999999999999999999999999999999999987 689999999999863 56
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCCC--C---CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHES--A---TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~--~---td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
...+|++++||||+|.+|..|++||+.++... . .++++.++++.+++.+.+ +........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67788999999999999989999999875321 1 133455566666654322 22344456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeC-----------Ce
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDD-----------GK 1296 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~-----------Gr 1296 (1350)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999999865 999999996 67
Q ss_pred EEEecChhHHhhc
Q 000689 1297 VAELGSHSHLLKN 1309 (1350)
Q Consensus 1297 IvE~Gt~~eLl~~ 1309 (1350)
++|.|++++++..
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999865
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=370.53 Aligned_cols=207 Identities=38% Similarity=0.618 Sum_probs=175.3
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
||+|++.+|. .|++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999876321 11111111 123344444 666666777789999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999874 38999999999999865 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=368.84 Aligned_cols=203 Identities=28% Similarity=0.483 Sum_probs=177.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|+.+ ++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5799999999643 6999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++.. + ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------K----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------C----chhhCCHHHHHHHHHHHH
Confidence 99999999876 99999975311 111 234666777777765533 2 235799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999965 9999999999999876
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=380.92 Aligned_cols=216 Identities=31% Similarity=0.555 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEP--CLFASTIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp--~LF~gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+|+||+| .++..|++|||.++.. ..+.++ +.++++..++.++... ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 123332 4455666666555443 3468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 5899999999999888999999999999999999998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.51 Aligned_cols=207 Identities=25% Similarity=0.446 Sum_probs=177.5
Q ss_pred EEEEEEEEECCCCCC-CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1083 VELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
|+++||+++|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 169999999999999999999999999999999999999999999999999875 456778999
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.+.. .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 112 23455566666665443 3345679999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|++++|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 58999999999999865 9999999999999865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=378.03 Aligned_cols=218 Identities=26% Similarity=0.460 Sum_probs=186.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--P---SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~iDG~di~~--~~l 1154 (1350)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999964 369999999999999999999999999999999999987 3 59999999999864 445
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCC---CCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHES---ATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~---~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|.+|++||+.++... ..++ ++.++++..++.+++. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999865311 1222 2444555566544332 223445668999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|+++++|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+.+
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.15 Aligned_cols=219 Identities=28% Similarity=0.450 Sum_probs=189.5
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~ 1153 (1350)
..|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999963 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
...+|+.++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. ...+..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 6678899999999999999999999987521 11 1 234556666666654432 23455667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000689 1306 LLKN 1309 (1350)
Q Consensus 1306 Ll~~ 1309 (1350)
++..
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=381.50 Aligned_cols=214 Identities=28% Similarity=0.519 Sum_probs=188.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEccCC--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1163 IVPQEP--CLFASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1163 ~VpQdp--~LF~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
||||+| .+|..|+++|+.++.. ..+. +.+.++++..++.++.... ...||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999998 4788899999986431 2232 3456677777776655443 3579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||+.+|++|||||||++||+.+.+.+.+.|++..+ |+|+|++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 899999999999985 5999999999999999999999864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=393.16 Aligned_cols=231 Identities=34% Similarity=0.517 Sum_probs=188.6
Q ss_pred eEEEEEEEEECCCCCC---------------------CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000689 427 LIELKHVDFSYPSRPE---------------------VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 485 (1350)
.|+++||++.|+..++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4777777777754321 1379999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHH----hccEEEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccc
Q 000689 486 QVLLDGHDIKSLKLRWL----RQQIGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDT 558 (1350)
Q Consensus 486 ~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t 558 (1350)
+|.++|.++...+...+ |+++|||+|++.+|.. |++||+.++... .+.++..+ .+.+.+..+ |++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~ 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence 99999999988776543 4689999999999964 999999986321 12222111 122334444 6666
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEE
Q 000689 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVA 635 (1350)
Q Consensus 559 ~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~ 635 (1350)
.......+||||||||++|||||+.+|+||||||||++||+.+.+.+++.|.++. .++|+|+|||+++.+.. ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 6677778999999999999999999999999999999999999999999999874 48999999999999865 99999
Q ss_pred EEeCCEEEEecChHHHHhccCCcHHHHHH
Q 000689 636 VLQQGSVSEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 636 vl~~G~i~~~g~~~~l~~~~~~~~y~~l~ 664 (1350)
+|++|++++.|++++++.++.+...+.++
T Consensus 237 vL~~G~i~~~g~~~~l~~~~~~~~v~~~~ 265 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILNNPANDYVRTFF 265 (400)
T ss_pred EEECCEEEecCCHHHHHhCcccHHHHHHH
Confidence 99999999999999998764333344444
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=378.40 Aligned_cols=218 Identities=31% Similarity=0.497 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++||+|+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999854 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|+.++|++|+|.+|+.|++||+.++.. .. .++++.++++..++++.. .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 677889999999999999999999986531 11 123445555665553211 1112345568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999866 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=375.55 Aligned_cols=224 Identities=30% Similarity=0.540 Sum_probs=189.8
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~ 1153 (1350)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999964 3699999999999999999999999999999999999863 69999999999875 45
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCC--CC-----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
...+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 6678999999999999999999999986521 11 1234555666666544332 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999999
Q ss_pred HhhcCCCchh
Q 000689 1306 LLKNNPDGCY 1315 (1350)
Q Consensus 1306 Ll~~~~~g~y 1315 (1350)
+... +...+
T Consensus 232 ~~~~-~~~~~ 240 (250)
T PRK14240 232 LFTN-PKDKR 240 (250)
T ss_pred HHhC-CCChH
Confidence 9765 34433
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=370.29 Aligned_cols=212 Identities=27% Similarity=0.479 Sum_probs=178.8
Q ss_pred eEEEEEEEEECCCCCC-CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
+|+++||+++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++|++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhh
Confidence 3789999999974311 269999999999999999999999999999999999999999999999999875 34567889
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
++|++|++.+|.. |++||+.+... ..+.++..+ .+.+.+..+ |++......+.+||||||||++||||++
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHh
Confidence 9999999999985 99999976432 112222111 123344444 6666677788899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999875 48999999999999865 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=377.90 Aligned_cols=220 Identities=30% Similarity=0.488 Sum_probs=183.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~ 498 (1350)
..|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 36999999999963 359999999999999999999999999999999999865 799999999999864 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCCC---CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDA---DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...++++++|++|++.+|+.|++||+.++.... ... .+.++++..++ ..++....+..+.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAAL-------WDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------CcchHHHHhcCcccCCHHH
Confidence 456788999999999999999999998753211 111 11222222211 1112234567788999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998865 99999999999999999999
Q ss_pred HHhcc
Q 000689 651 LIAKG 655 (1350)
Q Consensus 651 l~~~~ 655 (1350)
+..++
T Consensus 250 ~~~~~ 254 (268)
T PRK14248 250 IFTSP 254 (268)
T ss_pred HHhCC
Confidence 87653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=377.27 Aligned_cols=227 Identities=26% Similarity=0.500 Sum_probs=191.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~--~l 1154 (1350)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3699999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--C-C----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--S-A----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~-~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|..|++||+.++.. . . .++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999986421 1 1 1234566666666654332 223455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998765 999999999999999999999
Q ss_pred hhcCCCchhHHHH
Q 000689 1307 LKNNPDGCYARMI 1319 (1350)
Q Consensus 1307 l~~~~~g~y~~l~ 1319 (1350)
.+. +...|.+.+
T Consensus 233 ~~~-~~~~~~~~~ 244 (250)
T PRK14262 233 VER-PKNKLTEEY 244 (250)
T ss_pred HhC-CCChHHHHH
Confidence 865 344455433
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=380.30 Aligned_cols=224 Identities=25% Similarity=0.439 Sum_probs=188.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---Hhh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR 1158 (1350)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999876543 457
Q ss_pred cccEEEccCCccCcc-cHHHHhccCCC---CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGHE---SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~~---~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
++++|+||++.+|.+ |++||+.++.. ..+. +.+.++++..++.+. ......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 889999999999986 99999976421 1122 233444555544332 2233467999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+|||||+++|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999864 37999999999999876 9999999999999999999998
Q ss_pred hcCCCchhHHHHH
Q 000689 1308 KNNPDGCYARMIQ 1320 (1350)
Q Consensus 1308 ~~~~~g~y~~l~~ 1320 (1350)
+. +...+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 65 3445555554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=376.99 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--P---SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~iDG~di~~~--~l 1154 (1350)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999964 369999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++||||+|.+|+.|++||+.++.. .. .++++.++++..++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1234455666666543332 233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
++.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 865
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=373.45 Aligned_cols=216 Identities=30% Similarity=0.484 Sum_probs=185.3
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-HhccE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQI 506 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 506 (1350)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 35999999999999999999999999999999999999999999999999988776554 45679
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
+|++|++.+|.. |++||+.++.+. ...++.. ..+.+.+..+ |++........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875421 1111111 1223445555 67777778888999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999988765 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.99 Aligned_cols=220 Identities=27% Similarity=0.484 Sum_probs=187.6
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CccEEEECCccCCCC--
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--P---SSGRVMIDGKDIRKY-- 1152 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~iDG~di~~~-- 1152 (1350)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 467999999999963 369999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHhhcccEEEccCCccCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1153 NLKSLRRHMAIVPQEPCLFA-STIYENIAYGHE--S-AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1153 ~l~~lR~~i~~VpQdp~LF~-gTIreNL~~~~~--~-~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
+...+|++++|+||++.+|. .|++||+.++.. . .+ ++++.++++..++.+++.. .....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCH
Confidence 45578899999999999887 599999986421 1 11 2335566666666543322 22345678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecCh
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|+|++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998778899999999999865 999999999999999999
Q ss_pred hHHhhc
Q 000689 1304 SHLLKN 1309 (1350)
Q Consensus 1304 ~eLl~~ 1309 (1350)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 999865
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.98 Aligned_cols=213 Identities=31% Similarity=0.510 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC--CHHHhhcc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY--NLKSLRRH 1160 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~--~l~~lR~~ 1160 (1350)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred cEEEccCCccCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEPCLFA-STIYENIAYGHE---SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp~LF~-gTIreNL~~~~~---~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
++|+||++.+|. .|+++|+.++.. ..+.+ ++.++++..++ +.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 999999998886 599999986521 12222 23334444444 333444556899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||++++|++|||||||++||+++...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999865 48999999999999965 999999999999999999998765
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.97 Aligned_cols=218 Identities=33% Similarity=0.558 Sum_probs=187.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC--CHHHHhc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL--KLRWLRQ 504 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~--~~~~~r~ 504 (1350)
+|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++++
T Consensus 1 ~l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 1 MIEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred CEEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 3789999999963 3599999999999999999999999999999999999999999999999998764 3456788
Q ss_pred cEEEEccCCCccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 505 QIGLVSQEPALFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+++|++|++.++. .|++||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++||||
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHH
Confidence 9999999998886 599999987631 112222111 223445554 67766777888999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
++.+|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999998875 48999999999999965 999999999999999999998765
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=372.32 Aligned_cols=233 Identities=28% Similarity=0.434 Sum_probs=199.1
Q ss_pred HHHHHHHccCCCCCCCCCCCccCCCCcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000689 399 AKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 399 ~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 478 (1350)
+.+.+++..+++.+. ..+.....+.|+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 355666665444221 12223344579999999962 259999999999999999999999999999999999
Q ss_pred CCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccc
Q 000689 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT 558 (1350)
Q Consensus 479 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t 558 (1350)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++.. ....++.++++.+++.+.+..+|.++++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998643 2333455666667888889999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHH-HHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 000689 559 QVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEA-LDRFMIGRTTLVIAHRLSTIRKADVVAVL 637 (1350)
Q Consensus 559 ~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~l~~~~~~d~i~vl 637 (1350)
.+++.+.+||||||||++|||||+.+|++|||||||++||+++...+.+. ++.+.+++|+|+|||+++.+..||+|++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999988875 45666689999999999999889999999
Q ss_pred eCCEEEEecChHHHHhc
Q 000689 638 QQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 638 ~~G~i~~~g~~~~l~~~ 654 (1350)
++|++++.|+++++...
T Consensus 232 ~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 232 HEGSSYFYGTFSELQSL 248 (282)
T ss_pred ECCEEEEECCHHHHHhc
Confidence 99999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=380.08 Aligned_cols=213 Identities=29% Similarity=0.472 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCccCcc-cHHHHhccCCC----------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE----------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~----------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
+|+||++.++.+ |++||+.++.. ...++++.++++..++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999876654 99999986521 112345677788887766554433 47999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+||||++.+|+||||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 38999999999999965 9999999999999999999986
Q ss_pred h
Q 000689 1308 K 1308 (1350)
Q Consensus 1308 ~ 1308 (1350)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.58 Aligned_cols=214 Identities=30% Similarity=0.508 Sum_probs=181.3
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~ 502 (1350)
.++++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999997422 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-ccEEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 503 R-QQIGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 503 r-~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
| +.++|++|++.+|+. |++||+.++.. ....++..+ .+.+.+..+ |++....+...+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999998875 99999987421 112222111 123344444 666667778889999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecC
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4899999999999998889999999999998875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.48 Aligned_cols=220 Identities=32% Similarity=0.545 Sum_probs=186.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 24699999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
||++|++ .++..|++|||.++... .+.++..+. +.+.+..+ |++........+||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER-----VDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHH-----HHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45677999999986321 122222111 12222222 4555556667799999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|+||||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998863 8999999999999988999999999999999999988754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=380.80 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=190.7
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCc---cEEEECCccCCCCCHHHh
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS---GRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~iDG~di~~~~l~~l 1157 (1350)
+.|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 369999999999643 2369999999999999999999999999999999999999987 899999999988877788
Q ss_pred hcccEEEccCC--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1158 RRHMAIVPQEP--CLFASTIYENIAYGHE--SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1158 R~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
|++++||||+| .++..|++|||.++.. ..+.+ ++.++++..++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4678899999987532 23333 3566777777776655443 5799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHh
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ |+|||++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 89999999999999889999999999999999999987
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=367.73 Aligned_cols=199 Identities=29% Similarity=0.505 Sum_probs=174.3
Q ss_pred EEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEE
Q 000689 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163 (1350)
Q Consensus 1084 ~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~ 1163 (1350)
+++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 369999999999999999999999999999999999999999999999998864 456788999
Q ss_pred EccCC--ccCcccHHHHhccCCCCC--CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1164 VPQEP--CLFASTIYENIAYGHESA--TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1164 VpQdp--~LF~gTIreNL~~~~~~~--td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
+||+| .+|..|++||+.++.... .++++.++++..++.++..+.| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467889999998754322 2356778888888776654443 46999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhh-cCEEEEEeCCeEE
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~-~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv 1298 (1350)
|++|||||||++||+.+.+.+.+.|++. .+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999987 468999999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.52 Aligned_cols=222 Identities=27% Similarity=0.479 Sum_probs=183.9
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--C
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSL--K 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~--~ 498 (1350)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 3599999999999999999999999999999999999985 799999999998643 2
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcC--CCCccchhcCCCCCCChHHHHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKL--PDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkqr 574 (1350)
...+|+.++||+|++.+|+.|++||+.++.. ..+.++..+. +.+.+..+ .+...........+||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV-----VENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 3456788999999999999999999987532 1222221111 11222222 1111234556778999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999976
Q ss_pred cc
Q 000689 654 KG 655 (1350)
Q Consensus 654 ~~ 655 (1350)
.+
T Consensus 243 ~~ 244 (258)
T PRK14268 243 NP 244 (258)
T ss_pred CC
Confidence 53
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=341.88 Aligned_cols=220 Identities=31% Similarity=0.487 Sum_probs=189.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
++++.+++++|++ ...+++||||+++.||++||.|||||||||+++.|..++.|++|+|++||.|.... +...|++|
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhc
Confidence 4789999999985 34589999999999999999999999999999999999999999999999998654 56678899
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
|+++-+.-|+.. |++|||.|...-.......-.++.+++.+ .| +++.....+..++|-|+||||+|||||++||
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k---~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSK---RL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH---Hh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 999988888765 99999998643222222222344443333 33 6667777778899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|++||||||+||..+.+.+.+.+.+++. |++||+.||.++.++. ||+++++.+|+++..|+.+++.++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999875 9999999999999985 999999999999999999988764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=369.75 Aligned_cols=209 Identities=27% Similarity=0.484 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEccCCccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE--SA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~--~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+|.. |+++|+.++.. .. .++++.++++..++.++.... ..+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976311 11 233466677777776554332 35799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC-S-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~-g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
++.+|++|||||||++||+++.+.+.+.|++.. + |+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999865 3 7899999999999876 999999999999999998775
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=376.09 Aligned_cols=218 Identities=33% Similarity=0.521 Sum_probs=185.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC--------
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-------- 498 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~-------- 498 (1350)
+++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999974 35999999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhccEEEEccCCCccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHH
Q 000689 499 LRWLRQQIGLVSQEPALFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 574 (1350)
...+|+.++||+|++.+|+ .|++||+.++.. ....++..+ .+.+.+..+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456789999999999886 599999987421 112221111 123444444 66666677788999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 48999999999999975 9999999999999999999987
Q ss_pred hc
Q 000689 653 AK 654 (1350)
Q Consensus 653 ~~ 654 (1350)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 65
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=374.93 Aligned_cols=218 Identities=26% Similarity=0.507 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----ccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~--~~l 1154 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 36999999999999999999999999999999999999987 6999999999864 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|+.++||||+|.+|+.|++||+.++.. .. . ++.+.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987531 11 1 123444555556554332 234556778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999876 899999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.01 Aligned_cols=220 Identities=31% Similarity=0.512 Sum_probs=190.1
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--C
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--Y 1152 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~ 1152 (1350)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999963 3699999999999999999999999999999999999884 89999999999865 4
Q ss_pred CHHHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChh
Q 000689 1153 NLKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225 (1350)
Q Consensus 1153 ~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1225 (1350)
+...+|++++|+||++.+|.+|++||+.++.. .. . ++++.++++.+++.+.+. +..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999986421 11 1 234566666666654433 2345566789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChh
Q 000689 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304 (1350)
Q Consensus 1226 QrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~ 1304 (1350)
||||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred HHhhc
Q 000689 1305 HLLKN 1309 (1350)
Q Consensus 1305 eLl~~ 1309 (1350)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99765
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=380.99 Aligned_cols=217 Identities=34% Similarity=0.509 Sum_probs=180.7
Q ss_pred EEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH----hc
Q 000689 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL----RQ 504 (1350)
Q Consensus 429 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~----r~ 504 (1350)
.++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888853 358999999999999999999999999999999999999999999999999987765443 46
Q ss_pred cEEEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 505 QIGLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+++|++|++.+|. .|++||+.++... ....+..+ .+.+.+..+ |++........+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999885 5999999875321 11111111 112333333 555556666779999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhcc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+.+|+||||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+..
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999998874 38999999999999865 9999999999999999999998653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=379.92 Aligned_cols=221 Identities=28% Similarity=0.487 Sum_probs=186.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999743234699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCCC--cccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEPA--LFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~~--lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
|||+|+|. ++..|+.|||.++.. ..+.++..+.+ .+.+..+ |+..........||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-----DEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 667899999987632 22333322211 1222222 4444455567899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|++++++..
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998853 8999999999999988999999999999999999998754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=385.79 Aligned_cols=232 Identities=31% Similarity=0.470 Sum_probs=188.7
Q ss_pred eEEEEEEEEECCCCC-------CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH
Q 000689 427 LIELKHVDFSYPSRP-------EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~ 499 (1350)
.|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 2469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhccEEEEccCC--Cccc-ccHHHHhhcCC---CCCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCCh
Q 000689 500 R---WLRQQIGLVSQEP--ALFA-TTIKENILLGR---PDADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSG 569 (1350)
Q Consensus 500 ~---~~r~~i~~v~Q~~--~lf~-~ti~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSg 569 (1350)
. .+|++|+||+|+| .|++ .||.+|+..+. .....++.. ..+.+.+..+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 5678899999998 3554 39999986421 111222211 1223344443 443 234567789999
Q ss_pred HHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 570 Gqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|||||++|||||+.+|++||+||||++||..+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 38999999999999975 9999999999999999
Q ss_pred ChHHHHhccCCcHHHHHHH
Q 000689 647 THDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 647 ~~~~l~~~~~~~~y~~l~~ 665 (1350)
+.+++++++.+.+.+.++.
T Consensus 238 ~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 238 TKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 9999998754444344443
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=372.82 Aligned_cols=216 Identities=25% Similarity=0.457 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~i 1161 (1350)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998877655 45789
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhcc
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr 1238 (1350)
+|+||++.+|.+ |++||+.++.+ ....++..+ .+++++..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999986432 112221111 122333333 44444455567899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1239 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
+|++|||||||++||+++.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999988765 99999999999999999998864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=376.24 Aligned_cols=219 Identities=32% Similarity=0.518 Sum_probs=185.2
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~ 498 (1350)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 47999999999964 359999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC--CCH---HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD--ADL---NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~~---~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
...+|+.++||+|++.+|..|++||+.++... ... +++.++++..++ ..++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 66788899999999999988999999986431 111 112222222222 223344566777899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-----------CE
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQ-----------GS 641 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~-----------G~ 641 (1350)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999999865 999999996 67
Q ss_pred EEEecChHHHHhc
Q 000689 642 VSEIGTHDELIAK 654 (1350)
Q Consensus 642 i~~~g~~~~l~~~ 654 (1350)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999765
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=376.81 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhcc---CCC--CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF---YEP--SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl---~~p--~~G~I~iDG~di~~~--~l 1154 (1350)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999997 344 589999999998764 34
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++||||+|.+|..|++||+.++.. .. .+++++++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 677889999999999999999999986421 11 1234556666666544332 233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 865
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=379.00 Aligned_cols=214 Identities=29% Similarity=0.540 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC-HHHhhccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN-LKSLRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~-l~~lR~~i 1161 (1350)
++++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 236999999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEccCCc--cCcccHHHHhccCCCC--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEPC--LFASTIYENIAYGHES--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp~--LF~gTIreNL~~~~~~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+|+||+|. ++..|++|||.++... .+ ++++.++++..++.++.. .....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 6778999999875321 22 233455566666655443 33467999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998865 48999999999999988999999999999999999998754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=387.01 Aligned_cols=235 Identities=25% Similarity=0.424 Sum_probs=188.5
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCeeCCCCCHHHH
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT---SGQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~i~g~~~~~~~~~~~ 502 (1350)
.++++|++++|+.+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 699999999996421 246999999999999999999999999999999999999996 9999999999998877654
Q ss_pred h----ccEEEEccCC--Cccc-ccHHHHhhcCC---CCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 503 R----QQIGLVSQEP--ALFA-TTIKENILLGR---PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 503 r----~~i~~v~Q~~--~lf~-~ti~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
+ ++|+||+|+| .+++ .|+.+|+.... ...+.++..+.+ ..+.+. ..||++. ..++..+.+||||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~--~~~L~~-vgL~~~~-~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEES--VRMLDA-VKMPEAR-KRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHH-cCCCChH-HHhcCCcccCCHHHH
Confidence 3 4799999998 4554 38888775321 112222222111 111222 2344433 346788899999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|+|.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998854 8999999999999975 9999999999999999999
Q ss_pred HHHhccCCcHHHHHHH
Q 000689 650 ELIAKGENGVYAKLIR 665 (1350)
Q Consensus 650 ~l~~~~~~~~y~~l~~ 665 (1350)
++.+.+.+.+.+.++.
T Consensus 248 ~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 248 DVFYQPSHPYSIGLLN 263 (330)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 9998754444444443
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.15 Aligned_cols=218 Identities=30% Similarity=0.472 Sum_probs=183.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCC--CCCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIK--SLKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~--~~~~ 499 (1350)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5899999999964 3599999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhccEEEEccCCCcccc-cHHHHhhcCCC--C--CCHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChH
Q 000689 500 RWLRQQIGLVSQEPALFAT-TIKENILLGRP--D--ADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~--~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 570 (1350)
..+|++++|++|++.+|.. |+.||+.++.. . ...++ +.++++..++.+ .+.......+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 6678899999999999976 99999987531 1 01222 222222222211 1223456677899999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000689 650 ELIAK 654 (1350)
Q Consensus 650 ~l~~~ 654 (1350)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98765
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=366.31 Aligned_cols=203 Identities=26% Similarity=0.439 Sum_probs=179.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccCCccC-cccHHHHhccCC--CCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1163 IVPQEPCLF-ASTIYENIAYGH--ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1163 ~VpQdp~LF-~gTIreNL~~~~--~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
||||++.+| ..|++||+.++. ...+++++.++++..++.+.... ....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 579999997642 12345677788888888765443 2357999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|++|||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 58999999999999865 9999999999999876
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=386.04 Aligned_cols=227 Identities=27% Similarity=0.445 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCC-------CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH
Q 000689 1082 EVELKHVDFSYPSRP-------DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l 1154 (1350)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999988864
Q ss_pred ---HHhhcccEEEccCCc--cCc-ccHHHHhccC---CCCCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCC
Q 000689 1155 ---KSLRRHMAIVPQEPC--LFA-STIYENIAYG---HESAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221 (1350)
Q Consensus 1155 ---~~lR~~i~~VpQdp~--LF~-gTIreNL~~~---~~~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1221 (1350)
..+|++|+||||+|. |+. -|+.+|+... +.... .+.+.++++.+++.+ +.++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 357889999999994 554 4898888532 11112 234566666666632 12232 3457
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEE
Q 000689 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298 (1350)
Q Consensus 1222 LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIv 1298 (1350)
||||||||++|||||+.+|+|||+||||++||..+...|.+.|+++.+ |+|+|+|||+++.+.. ||+|+||.+|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999975 9999999999999
Q ss_pred EecChhHHhhcCCCchhHHHH
Q 000689 1299 ELGSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1299 E~Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
|.|++++++++ +...|.+.+
T Consensus 235 e~g~~~~~~~~-p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNN-PRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcC-CCCHHHHHH
Confidence 99999999986 555676543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=372.89 Aligned_cols=220 Identities=30% Similarity=0.523 Sum_probs=185.9
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCeeCCCC--C
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDIKSL--K 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~i~g~~~~~~--~ 498 (1350)
+.|+++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 36899999999963 35999999999999999999999999999999999999997 69999999998643 4
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC--CC-HHHH----HHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD--AD-LNEI----EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~-~~~~----~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|+.++||+|++.+|+.|++||+.++... .. .++. .++.+..++ .+++.+.....+.+|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL-------WDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCC-------chhhhhHhhCCcccCCHHH
Confidence 55778899999999999989999999886321 11 1112 222222222 2223345677888999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999988678999999999999876 89999999999999999999
Q ss_pred HHhcc
Q 000689 651 LIAKG 655 (1350)
Q Consensus 651 l~~~~ 655 (1350)
+...+
T Consensus 233 ~~~~~ 237 (251)
T PRK14249 233 IFSRP 237 (251)
T ss_pred HHhCC
Confidence 87654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=379.42 Aligned_cols=219 Identities=27% Similarity=0.522 Sum_probs=187.5
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~ 1153 (1350)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999964 369999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCC-----CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHE-----SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~-----~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
...+|++++||||++.+|..|++||+.++.. ...+++++++++..++...+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999998999999986421 1123456667777666433321 234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEE-EEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIA-VIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~-Vl~~GrIvE~Gt~~eL 1306 (1350)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=385.19 Aligned_cols=214 Identities=24% Similarity=0.436 Sum_probs=183.7
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 36999999999963 36999999999999999999999999999999999999999999999999997654 457899
Q ss_pred cEEEccCCccCc-ccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1161 MAIVPQEPCLFA-STIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1161 i~~VpQdp~LF~-gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
||||||+|.+|. .|++||+.+... ..+..+ +.++++..++ ++..++.+ .+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV----GELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch----hhCCHHHHHHHHHH
Confidence 999999999886 699999985321 123332 2333444433 33445555 46999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||+.+|++|+|||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999875 48999999999999976 999999999999999999999754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=371.23 Aligned_cols=204 Identities=34% Similarity=0.494 Sum_probs=172.7
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH----h
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS----L 1157 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~----l 1157 (1350)
|+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcccEEEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1158 RRHMAIVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
|++++|+||+|.+|.+ |++||+.++.. ... ++++.++++..++.++ ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 6789999999999876 99999987532 111 2234455555554433 3344568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeE
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrI 1297 (1350)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 8999999999999888999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=370.65 Aligned_cols=208 Identities=38% Similarity=0.536 Sum_probs=175.6
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH----HH
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR----WL 502 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~----~~ 502 (1350)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 14699999999999999999999999999999999999999999999999998876643 24
Q ss_pred hccEEEEccCCCcccc-cHHHHhhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRPDA--DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
+++++|++|++.+|.. |++||+.++.... ...+. ...+.+.+..+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 6789999999999876 9999998864311 11111 11223445554 6666677778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSV 642 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i 642 (1350)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998854 8999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=375.51 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=186.1
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC---------
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK--------- 498 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~--------- 498 (1350)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999974 36999999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhccEEEEccCCCccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChH
Q 000689 499 ----LRWLRQQIGLVSQEPALFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570 (1350)
Q Consensus 499 ----~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 570 (1350)
...+|+.++|++|++.+|. .|+.||+.++.. ....++..+ .+.+.+..+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999885 699999987521 112222111 223445555 6666677788899999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 8999999999999865 99999999999999999
Q ss_pred hHHHHhcc
Q 000689 648 HDELIAKG 655 (1350)
Q Consensus 648 ~~~l~~~~ 655 (1350)
++++.+..
T Consensus 231 ~~~~~~~~ 238 (252)
T TIGR03005 231 PDEIFRQP 238 (252)
T ss_pred HHHHhcCC
Confidence 99997653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.34 Aligned_cols=219 Identities=26% Similarity=0.417 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~ 1160 (1350)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
++|+||++.+|.+ |+++|+.++....+.++..+.++ +.+..++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999987532222222222111 1111111 111112234567999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|+||||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999865 58999999999998755 999999999999999999999743
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=376.88 Aligned_cols=220 Identities=28% Similarity=0.494 Sum_probs=190.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCccCcc-cHHHHhccCCCC----------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHES----------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~----------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
|+||++.+|.+ |++||+.++... ..++++.++++..++.++... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 999999875210 112345666666666554333 34679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||||++++|++|||||||++||+++.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998865 48999999999999865 999999999999999999998743
Q ss_pred CCCchhHHHH
Q 000689 1310 NPDGCYARMI 1319 (1350)
Q Consensus 1310 ~~~g~y~~l~ 1319 (1350)
..+.+.+
T Consensus 229 ---~~~~~~~ 235 (255)
T PRK11231 229 ---GLLRTVF 235 (255)
T ss_pred ---HHHHHHh
Confidence 3455554
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=373.18 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=181.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC--------H
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN--------L 1154 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~--------l 1154 (1350)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999964 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhcccEEEccCCccCc-ccHHHHhccCC---CCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFA-STIYENIAYGH---ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~-gTIreNL~~~~---~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
..+|++++||||+|.+|. .|++||+.++. .....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999998885 69999997641 11222221111 12233332 333334455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 48999999999999966 99999999999999999999976
Q ss_pred c
Q 000689 1309 N 1309 (1350)
Q Consensus 1309 ~ 1309 (1350)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 5
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=373.34 Aligned_cols=218 Identities=32% Similarity=0.489 Sum_probs=183.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCCHHH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~~~~~ 501 (1350)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3599999999999999999999999999999999999974 6999999999998877778
Q ss_pred HhccEEEEccCCCcc-cccHHHHhhcCCCC----CCHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 502 LRQQIGLVSQEPALF-ATTIKENILLGRPD----ADLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~lf-~~ti~eNi~~g~~~----~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
+|+.|||++|++.+| ..|++||+.++... .... ++.++++..++. +.++......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLW-------DEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCC-------cchhhhhcCCcccCCHHHH
Confidence 889999999999765 56999999876321 0111 122222222221 1112344566789999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999864 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 765
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=377.58 Aligned_cols=229 Identities=31% Similarity=0.453 Sum_probs=188.1
Q ss_pred eEEEEEEEEECCCC------CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH
Q 000689 427 LIELKHVDFSYPSR------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~ 500 (1350)
+|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 58999999999631 134699999999999999999999999999999999999999999999999999877654
Q ss_pred ---HHhccEEEEccCCC--cc-cccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChH
Q 000689 501 ---WLRQQIGLVSQEPA--LF-ATTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGG 570 (1350)
Q Consensus 501 ---~~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG 570 (1350)
.+|+.|+||+|++. ++ ..|++||+.++.. ....++. ...+.+.+..+ |++ ......+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHH
Confidence 36778999999983 44 3699999975421 1111111 11223444444 664 4556778899999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999998753 8999999999999975 99999999999999999
Q ss_pred hHHHHhccCCcHHHHH
Q 000689 648 HDELIAKGENGVYAKL 663 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l 663 (1350)
++++... .++.++.+
T Consensus 235 ~~~~~~~-~~~~~~~~ 249 (265)
T TIGR02769 235 VAQLLSF-KHPAGRNL 249 (265)
T ss_pred HHHHcCC-CCHHHHHH
Confidence 9999864 24455444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=376.08 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=184.9
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC--------
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY-------- 1152 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~-------- 1152 (1350)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999964 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHhhcccEEEccCCccCcc-cHHHHhccCC---CCCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCC
Q 000689 1153 -----NLKSLRRHMAIVPQEPCLFAS-TIYENIAYGH---ESAT----ESEIIEAARLANADKFISSLPDGYKTFVGERG 1219 (1350)
Q Consensus 1153 -----~l~~lR~~i~~VpQdp~LF~g-TIreNL~~~~---~~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G 1219 (1350)
....+|++++||||+|.+|.. |++||+.++. .... ++++.++++..++.++. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 135678899999999999974 9999997632 1112 22345555555554432 13445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeE
Q 000689 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297 (1350)
Q Consensus 1220 ~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrI 1297 (1350)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 48999999999999986 999999999999
Q ss_pred EEecChhHHhhc
Q 000689 1298 AELGSHSHLLKN 1309 (1350)
Q Consensus 1298 vE~Gt~~eLl~~ 1309 (1350)
++.|+++++++.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999999765
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=376.27 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=185.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~ 498 (1350)
..++++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 36999999999973 359999999999999999999999999999999999987 699999999999853 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCC--CCCHHH-HHHHHHHhchHHHHhcC--CCCccchhcCCCCCCChHHHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRP--DADLNE-IEEAARVANAYSFIIKL--PDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~-~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkq 573 (1350)
...++++++|++|++.+|..|++||+.++.. ....++ ..+. +.+.+..+ .+++.......+.+|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 5567889999999999998999999987532 111111 1111 11111111 123445567788899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999997
Q ss_pred hcc
Q 000689 653 AKG 655 (1350)
Q Consensus 653 ~~~ 655 (1350)
..+
T Consensus 255 ~~~ 257 (271)
T PRK14238 255 SNP 257 (271)
T ss_pred cCC
Confidence 653
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=392.74 Aligned_cols=210 Identities=33% Similarity=0.566 Sum_probs=180.2
Q ss_pred CcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh----hcccEEEccCCccCc-c
Q 000689 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFA-S 1173 (1350)
Q Consensus 1099 ~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l----R~~i~~VpQdp~LF~-g 1173 (1350)
++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.|+..++...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998876654 468999999999986 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000689 1174 TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247 (1350)
Q Consensus 1174 TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDE 1247 (1350)
|++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987531 112 244566777777766555443 5799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchh-HHHHH
Q 000689 1248 ATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCY-ARMIQ 1320 (1350)
Q Consensus 1248 aTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y-~~l~~ 1320 (1350)
||++||+.+.+.+++.|++.. .|+|+|+|||+++.+.. ||+|++|++|+|++.|++++++.. +...| +.++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~-~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN-PANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC-cccHHHHHHHh
Confidence 999999999999999999864 48999999999999865 999999999999999999999876 44444 34443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=389.58 Aligned_cols=206 Identities=28% Similarity=0.406 Sum_probs=173.9
Q ss_pred CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCe----eCCCCCHHHH---h-ccEEEEccCCC
Q 000689 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH----DIKSLKLRWL---R-QQIGLVSQEPA 514 (1350)
Q Consensus 443 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 514 (1350)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 5666665443 3 58999999999
Q ss_pred ccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEe
Q 000689 515 LFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591 (1350)
Q Consensus 515 lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililD 591 (1350)
+|+ .|++||+.|+... .+.++.. ..+.+.++.+ |++......+.+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 6999999987421 1222211 1223334433 5555566677889999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhcc
Q 000689 592 EATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 592 E~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 99999999999999999998753 899999999999985 59999999999999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=377.56 Aligned_cols=219 Identities=30% Similarity=0.534 Sum_probs=186.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-HHHHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-LRWLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~-~~~~r~~ 505 (1350)
+++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3789999999963 235999999999999999999999999999999999999999999999999997765 3567889
Q ss_pred EEEEccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 506 IGLVSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 506 i~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+|||+|+|. ++..|++|||.++... .+.++..+. +.+.+..+ |++......+..||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999985 5677999999886421 222222221 12333344 666666777889999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998875 48999999999999988999999999999999999988654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=373.20 Aligned_cols=219 Identities=32% Similarity=0.559 Sum_probs=184.4
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~--~~ 498 (1350)
|.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999974 3599999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|+.++||+|++.+|+.|++||+.++... . .. +++.++++..++.+ ++.......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 55678899999999999989999999886321 1 11 12222222322221 22334566788999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8765
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=374.76 Aligned_cols=221 Identities=27% Similarity=0.479 Sum_probs=184.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--P---TSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~i~g~~~~~--~~~ 499 (1350)
.|+++|++|+|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 6999999999973 359999999999999999999999999999999999997 3 58999999999864 345
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCCC---CHHHHHHHHHHhchHHHHhcC--CCCccchhcCCCCCCChHHHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDA---DLNEIEEAARVANAYSFIIKL--PDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkqr 574 (1350)
..+|+.+||++|++.+|+.|++||+.++.... ..++..+. +.+.+..+ .+.+.+.....+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 56788999999999999899999998763211 12222111 11222222 1112234567788999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
++|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999998778999999999999865 99999999999999999999876
Q ss_pred cc
Q 000689 654 KG 655 (1350)
Q Consensus 654 ~~ 655 (1350)
++
T Consensus 244 ~~ 245 (259)
T PRK14274 244 NP 245 (259)
T ss_pred CC
Confidence 53
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=377.80 Aligned_cols=227 Identities=25% Similarity=0.424 Sum_probs=188.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~r 503 (1350)
.|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 6999999999963 3699999999999999999999999999999999999999999999999998776543 357
Q ss_pred ccEEEEccCCCcccc-cHHHHhhcCCCC---CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRPD---ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
++++|++|++.+|.. |+.||+.++... .+.++..+ .+.+.+..+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999976 999999875211 12111111 112233333 5555566677899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~- 235 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP- 235 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC-
Confidence 99999999999999999999999999999998753 7999999999999876 9999999999999999999987652
Q ss_pred CcHHHHHH
Q 000689 657 NGVYAKLI 664 (1350)
Q Consensus 657 ~~~y~~l~ 664 (1350)
...+..++
T Consensus 236 ~~~~~~~~ 243 (269)
T PRK11831 236 DPRVRQFL 243 (269)
T ss_pred cHHHHHHH
Confidence 33344443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=373.56 Aligned_cols=212 Identities=24% Similarity=0.414 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~i 1161 (1350)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999964 36999999999999999999999999999999999999999999999999998877664 35679
Q ss_pred EEEccCCccCcc-cHHHHhccCCCCC--------------CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHESA--------------TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~~--------------td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
+|+||++.+|.+ |++||+.++.... .++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999986 9999998753210 112233333333 34434445567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999976 99999999999999999999
Q ss_pred Hhh
Q 000689 1306 LLK 1308 (1350)
Q Consensus 1306 Ll~ 1308 (1350)
++.
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=361.91 Aligned_cols=200 Identities=36% Similarity=0.572 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCC--CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 428 IELKHVDFSYPSRPE--VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999974311 3699999999999999999999999999999999999999999999999 5
Q ss_pred EEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
|+|++|+|.+|+.|++||+.++.. .+.++..++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 3445667777788889999999999999999999999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000689 586 AILLLDEATSALDSESEKLVQE-ALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGS 641 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 641 (1350)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456553 4799999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=377.31 Aligned_cols=216 Identities=29% Similarity=0.452 Sum_probs=187.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCc--cCcccHHHHhccCCCC--CCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHH
Q 000689 1162 AIVPQEPC--LFASTIYENIAYGHES--ATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233 (1350)
Q Consensus 1162 ~~VpQdp~--LF~gTIreNL~~~~~~--~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiA 1233 (1350)
+|+||+|. ++..|+++|+.++... ... +++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999994 4556899999875321 222 34455566666554332 33467999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCeEEEecChhHHhhc
Q 000689 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1234 RALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||++.+|++|||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||||++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999988999999999999999999998764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=376.11 Aligned_cols=219 Identities=32% Similarity=0.498 Sum_probs=188.2
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~ 1153 (1350)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 3699999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCC------CCC-HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHE------SAT-ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~------~~t-d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
...+|++++|+||+|.+|+.|++||+.++.. +.+ ++.+.++++.+++.+++.. .....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986421 111 2335566777777554432 2234556899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe-----CCeEEEe
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID-----DGKVAEL 1300 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~-----~GrIvE~ 1300 (1350)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998778999999999999876 99999998 5999999
Q ss_pred cChhHHhhc
Q 000689 1301 GSHSHLLKN 1309 (1350)
Q Consensus 1301 Gt~~eLl~~ 1309 (1350)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999765
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=390.82 Aligned_cols=218 Identities=31% Similarity=0.533 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.++..++. .|+++
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 369999999999999999999999999999999999999999999999999987664 47789
Q ss_pred EEEccCCccCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||+|++.||.. |++|||.++.. ..+. +++.++++..++.++..+. ..+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK-----------PHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999998642 1222 3455666666666554443 3579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCC
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~ 1311 (1350)
||+++|++||||||||+||..+...+.+.|++.. .|.|+|+|||+++.+.. ||||+||++|++++.|+++++..+ |
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~-p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH-P 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC-C
Confidence 9999999999999999999999999998887764 37999999999999755 999999999999999999999976 5
Q ss_pred CchhH
Q 000689 1312 DGCYA 1316 (1350)
Q Consensus 1312 ~g~y~ 1316 (1350)
...|.
T Consensus 242 ~~~~~ 246 (377)
T PRK11607 242 TTRYS 246 (377)
T ss_pred ccHHH
Confidence 65543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.29 Aligned_cols=203 Identities=37% Similarity=0.642 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999998766543 56899
Q ss_pred EEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.++... ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986521 122 2234555666666555443 335799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
++++|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999865 38999999999999876 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=370.57 Aligned_cols=218 Identities=27% Similarity=0.454 Sum_probs=183.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH-HHhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR-WLRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 505 (1350)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 6899999999963 3699999999999999999999999999999999999999999999999999887754 46788
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
++|++|++.+|.. |++||+.++......++..+.+ .+.+..++ +++........+||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999975 9999998864322222222211 12222221 122233456778999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|+||||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998875 58999999999998755 99999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=360.32 Aligned_cols=217 Identities=30% Similarity=0.569 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCc---cCCCCCHHHhh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK---DIRKYNLKSLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~---di~~~~l~~lR 1158 (1350)
.|+.+|++..|+. .++++||||+|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++... -.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 3788899998864 46899999999999999999999999999999999999999999999999 7776433 34
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCC----C----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHE----S----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~----~----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
++||+|+|+..||. .||++||+||.+ . .....+.+-++.+++..+-..-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 68999999999885 699999999962 1 12334556677777766655544 6899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
+||||||...|++|+||||.++||+.-.+.+++-|++... |.|++.|||+.+.+.. ||||+||++|+|.+.|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998653 8999999999998855 999999999999999999999
Q ss_pred hhcCCCchh
Q 000689 1307 LKNNPDGCY 1315 (1350)
Q Consensus 1307 l~~~~~g~y 1315 (1350)
... |+..|
T Consensus 226 ~~~-P~s~f 233 (345)
T COG1118 226 YDH-PASRF 233 (345)
T ss_pred hcC-CCccc
Confidence 876 66654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=384.96 Aligned_cols=231 Identities=24% Similarity=0.385 Sum_probs=184.3
Q ss_pred eEEEEEEEEECCCCCC-CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEECCeeCCCCCHHH
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD----PTSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~i~g~~~~~~~~~~ 501 (1350)
.|+++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999974321 359999999999999999999999999999999999998 48999999999998887765
Q ss_pred Hh----ccEEEEccCCC--ccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCcc---chhcCCCCCCC
Q 000689 502 LR----QQIGLVSQEPA--LFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFD---TQVRERGVQLS 568 (1350)
Q Consensus 502 ~r----~~i~~v~Q~~~--lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~~g~~LS 568 (1350)
++ +.|+||+|+|. +++ .|+.+|+..... ....++..+ .+.+.+..+ |++ ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ-----RAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 44 37999999984 443 366665542110 112111111 122333333 443 34577889999
Q ss_pred hHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645 (1350)
Q Consensus 569 gGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 645 (1350)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999885 38999999999999864 999999999999999
Q ss_pred cChHHHHhccCCcHHHHHH
Q 000689 646 GTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 646 g~~~~l~~~~~~~~y~~l~ 664 (1350)
|+++++++++.+.+.+.++
T Consensus 236 g~~~~~~~~p~hpyt~~ll 254 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQALL 254 (326)
T ss_pred CCHHHHhhCCCChHHHHHH
Confidence 9999999775444444444
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=373.01 Aligned_cols=212 Identities=30% Similarity=0.475 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhccc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~i 1161 (1350)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999964 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccCCccCcc-cHHHHhccCCCCC--CHHHH-HHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGHESA--TESEI-IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~~~~--td~ei-~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
+|+||++.+|.. |+++|+.++.... .+++. .++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653211 11221 22222221 1223334455679999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998753 7999999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=374.49 Aligned_cols=228 Identities=26% Similarity=0.466 Sum_probs=191.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~--~l 1154 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
...|++++|+||+|.+|+.|++||+.++.. +. . ++.+.++++..++.+. +.+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 677889999999999999999999987532 11 1 2234555555555332 22335566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 999999999999999999999
Q ss_pred hhcCCCchhHHHHH
Q 000689 1307 LKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1307 l~~~~~g~y~~l~~ 1320 (1350)
.+. +...+.+.+.
T Consensus 236 ~~~-~~~~~~~~~~ 248 (253)
T PRK14261 236 FEN-PHEELTENYI 248 (253)
T ss_pred HhC-CCcHHHHHHh
Confidence 865 4444555443
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=355.22 Aligned_cols=178 Identities=34% Similarity=0.623 Sum_probs=166.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+.+ +.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 23699999999999999999999999999999999999999999999999998766 667889999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 357999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCeEEEec
Q 000689 1243 MLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~G 1301 (1350)
|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=369.97 Aligned_cols=206 Identities=33% Similarity=0.518 Sum_probs=175.8
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
|+++|++++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996411 1369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHE--SA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~--~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+||||+|.+|. .|++||+.++.. .. .++++.++++..++.++.... ..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999887 699999986421 11 134456666666666554433 3579999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe--CCeEEEecChh
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVID--DGKVAELGSHS 1304 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~--~GrIvE~Gt~~ 1304 (1350)
||+++|++|||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999864 38999999999998865 99999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=374.90 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCC--CCCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIR--KYNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~--~~~l 1154 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCC--C---CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHES--A---TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~--~---td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
..+|++++|++|+|.+|+.|++||+.++... . .++++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 1 12345556677777655432 2345567899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCeEEE
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID---------DGKVAE 1299 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~---------~GrIvE 1299 (1350)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999865 99999998 899999
Q ss_pred ecChhHHhhc
Q 000689 1300 LGSHSHLLKN 1309 (1350)
Q Consensus 1300 ~Gt~~eLl~~ 1309 (1350)
.|+++++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999865
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=374.87 Aligned_cols=219 Identities=33% Similarity=0.543 Sum_probs=185.3
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC--------
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL-------- 497 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~-------- 497 (1350)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 3699999999999999999999999999999999999999999999999988542
Q ss_pred -----CHHHHhccEEEEccCCCcccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchh-cCCCCCC
Q 000689 498 -----KLRWLRQQIGLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQV-RERGVQL 567 (1350)
Q Consensus 498 -----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-~~~g~~L 567 (1350)
....+++.++||+|++.+|.. |++||+.++.. .....+..+ .+.+.+..+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 134667899999999999975 99999987421 112111111 123344444 565543 6677899
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEe
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEI 645 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~ 645 (1350)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999885 48999999999999986 999999999999999
Q ss_pred cChHHHHhc
Q 000689 646 GTHDELIAK 654 (1350)
Q Consensus 646 g~~~~l~~~ 654 (1350)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=376.39 Aligned_cols=218 Identities=28% Similarity=0.488 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~l 1154 (1350)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 369999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CCCHH-----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SATES-----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~td~-----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|..|++||+.++.. +.+++ .+.++++..++.+ ++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 12221 2233344433322 233334556678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 865
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=376.82 Aligned_cols=220 Identities=30% Similarity=0.558 Sum_probs=187.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 69999999999632 34699999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
+||+|+|. ++..|++|||.++... .+.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999886321 22222211 122333333 5555667777899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 4899999999999888999999999999999998888654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=380.50 Aligned_cols=223 Identities=30% Similarity=0.502 Sum_probs=183.8
Q ss_pred cceEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC----C-
Q 000689 425 SGLIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS----L- 497 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~----~- 497 (1350)
.+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997432 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred CHHHHhccEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHH
Q 000689 498 KLRWLRQQIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQK 572 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqk 572 (1350)
+...+|+.|+||+|+| .+|..|++||+.++... ...++..+.+ .+.+..+ |+. ......+.+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 46778999999886421 2222222211 1222222 332 345567789999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998875 38999999999998865 9999999999999999998
Q ss_pred HHHhc
Q 000689 650 ELIAK 654 (1350)
Q Consensus 650 ~l~~~ 654 (1350)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=371.78 Aligned_cols=229 Identities=27% Similarity=0.493 Sum_probs=187.3
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCeeCCCC--
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--P---TSGQVLLDGHDIKSL-- 497 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~i~g~~~~~~-- 497 (1350)
++.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 457999999999973 359999999999999999999999999999999999986 4 689999999998643
Q ss_pred CHHHHhccEEEEccCCCccc-ccHHHHhhcCCCC---CCHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCCh
Q 000689 498 KLRWLRQQIGLVSQEPALFA-TTIKENILLGRPD---ADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~---~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 569 (1350)
+...+|+.++||+|++.+|. .|++||+.++... .+.++ +.++++..++.++ +....+..+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE-------VKDRLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcCcCCH
Confidence 34567889999999999987 5999999875311 11121 2222222222211 12344567789999
Q ss_pred HHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 570 Gqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998778999999999999865 999999999999999999
Q ss_pred HHHHhccCCcHHHHH
Q 000689 649 DELIAKGENGVYAKL 663 (1350)
Q Consensus 649 ~~l~~~~~~~~y~~l 663 (1350)
+++...+....++.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (252)
T PRK14256 232 KKIFTTPEKKQTEDY 246 (252)
T ss_pred HHHHhCCCcHHHHHH
Confidence 999866433333333
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=378.84 Aligned_cols=221 Identities=32% Similarity=0.550 Sum_probs=185.6
Q ss_pred eEEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC----CHH
Q 000689 427 LIELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL----KLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~----~~~ 500 (1350)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhccEEEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHH
Q 000689 501 WLRQQIGLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri 575 (1350)
..++.|+|++|+| .+|..|++|||.++.. ..+.++..+ .+.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778899999998 5777899999987532 122222221 123344444 665 355777889999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 58999999999999865 99999999999999999998865
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=385.34 Aligned_cols=229 Identities=22% Similarity=0.349 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCC-CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC----CCccEEEECCccCCCCCHHH
Q 000689 1082 EVELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE----PSSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~iDG~di~~~~l~~ 1156 (1350)
-++++|++++|+.+.. .++|+||||+|++||++||||+||||||||+++|.|+++ |++|+|.+||.|+..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 359999999999999999999999999999999999997 48999999999999988776
Q ss_pred hhc----ccEEEccCCc--cCc-ccHHHHh----ccCCC---CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCC
Q 000689 1157 LRR----HMAIVPQEPC--LFA-STIYENI----AYGHE---SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQL 1222 (1350)
Q Consensus 1157 lR~----~i~~VpQdp~--LF~-gTIreNL----~~~~~---~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1222 (1350)
+|+ +|+||||+|. ++. -|+.+|+ ..... ....+++.++++.+++.+.. ........+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 553 6999999995 332 3555544 32211 01223466677777764321 1133456789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhh-hcCEEEEEeCCeEEE
Q 000689 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAE 1299 (1350)
Q Consensus 1223 SgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE 1299 (1350)
|||||||++|||||+.+|++||+||||++||+.+...|.+.|+++. .|.|+|+|||+++.+. .||||+||.+|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 3899999999999995 599999999999999
Q ss_pred ecChhHHhhcCCCchhHHHH
Q 000689 1300 LGSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1300 ~Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
.|++++++++ +...|.+.+
T Consensus 235 ~g~~~~~~~~-p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRA-PRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhC-CCChHHHHH
Confidence 9999999976 566676544
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.98 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=173.2
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR 1158 (1350)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 236999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cccEEEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1159 -RHMAIVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 -~~i~~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
++++|+||+|.+|. .|++||+.++.. ... .+++.++++..++.+. .......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 68999999999885 599999986321 112 1234445555544433 3344467999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEE
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVA 1298 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIv 1298 (1350)
+||||++++|+||||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.35 Aligned_cols=213 Identities=28% Similarity=0.453 Sum_probs=177.9
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|++|++.++.. |++||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987421 111111111 112333333 444445566678999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
|++|||||||++||+++.+.+.+.|+++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998875 3 7899999999999875 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=377.09 Aligned_cols=219 Identities=32% Similarity=0.536 Sum_probs=185.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.++++|++++|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999632 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
+||+|+| .+|+.|+.||+.++.. ..+.++..+ .+.+.+..+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 3677899999987532 122222211 112233333 4444455667799999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999988753 899999999999985 5999999999999999999998754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=383.90 Aligned_cols=229 Identities=24% Similarity=0.416 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC---ccEEEECCccCCCCCHHHh
Q 000689 1082 EVELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS---SGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~iDG~di~~~~l~~l 1157 (1350)
-++++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cccEEEccCC--ccCc-ccHHHHhccC---CCCCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1158 R----RHMAIVPQEP--CLFA-STIYENIAYG---HESATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1158 R----~~i~~VpQdp--~LF~-gTIreNL~~~---~~~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
| ++|+||||+| .++. .|+.+|+... ....+.++ +.+.++.+++ |++.+ .++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 4 4799999999 3544 4777776421 11123333 3334444433 33322 2456678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEe
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~ 1300 (1350)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ |.|+|+|||+++.+.. ||||+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 8899999999999975 999999999999999
Q ss_pred cChhHHhhcCCCchhHHHH
Q 000689 1301 GSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1301 Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
|+++++++. |...|.+.+
T Consensus 244 g~~~~i~~~-p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQ-PSHPYSIGL 261 (330)
T ss_pred CCHHHHHhC-CCCHHHHHH
Confidence 999999986 666676643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=389.67 Aligned_cols=209 Identities=31% Similarity=0.458 Sum_probs=178.6
Q ss_pred CcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCc----cCCCCCHHHhh----cccEEEccCCcc
Q 000689 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK----DIRKYNLKSLR----RHMAIVPQEPCL 1170 (1350)
Q Consensus 1099 ~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~----di~~~~l~~lR----~~i~~VpQdp~L 1170 (1350)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+| ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 6899999999999999999999999999999999999999999999995 67777665543 579999999999
Q ss_pred Cc-ccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000689 1171 FA-STIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243 (1350)
Q Consensus 1171 F~-gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~IL 1243 (1350)
|+ .|++||+.++.. ..+. +.+.++++..++.++.... ..+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 699999987631 1222 3456677777776554333 3579999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCchhHHHH
Q 000689 1244 LLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1244 lLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
|||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++.+ |...|.+.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~-p~~~~~~~~ 264 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN-PANDYVADF 264 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC-cchHHHHHH
Confidence 99999999999999999999998753 8999999999999854 999999999999999999999876 455555433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=372.78 Aligned_cols=219 Identities=31% Similarity=0.512 Sum_probs=183.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CC---CCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY--DP---TSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~---~~G~i~i~g~~~~~~--~~ 499 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999973 35999999999999999999999999999999999995 46 599999999998643 34
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCC--CC-CHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRP--DA-DLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+|+.++||+|++.+|+.|++||+.++.. .. ..++ +.++++..++. .++.+..+..+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIW-------DEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCc-------hhHHHHHhcCcccCCHHHH
Confidence 567889999999999999999999987531 11 1111 22222222221 1223456677889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999999
Q ss_pred Hhcc
Q 000689 652 IAKG 655 (1350)
Q Consensus 652 ~~~~ 655 (1350)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=367.31 Aligned_cols=209 Identities=33% Similarity=0.574 Sum_probs=175.9
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH---Hh
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---LR 503 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~r 503 (1350)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -ccEEEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 504 -QQIGLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 504 -~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
+.++||+|++.+|. .|++||+.++.. ..+..+..+ .+.+.+..+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 599999987421 112111111 122344444 6666677778899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEE
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~ 643 (1350)
||+.+|+||||||||++||+++...+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 379999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=371.55 Aligned_cols=220 Identities=30% Similarity=0.478 Sum_probs=183.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF---YDP--TSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~i~g~~~~~~--~~ 499 (1350)
+|+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 6899999999963 3599999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CHHHHHHHHHHhchHHHHhcC--CCCccchhcCCCCCCChHHHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DLNEIEEAARVANAYSFIIKL--PDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkqr 574 (1350)
..+|+.++|+||++.+|..|++||+.++... . ..++..+. +.+.+..+ ++.+.+...+.+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875321 1 11111111 11222222 2222345677788999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999999865 99999999999999999999976
Q ss_pred c
Q 000689 654 K 654 (1350)
Q Consensus 654 ~ 654 (1350)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 5
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=372.08 Aligned_cols=204 Identities=28% Similarity=0.448 Sum_probs=179.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999964 36999999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEccCCccCc-ccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCC
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA 1240 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p 1240 (1350)
+|+||+|.+|. .|++||+.++.....++++.++++..++.++.. ....+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 699999987643223456677777777765433 334679999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChh
Q 000689 1241 EIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHS 1304 (1350)
Q Consensus 1241 ~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~ 1304 (1350)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 37999999999999865 9999999999999998765
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=377.55 Aligned_cols=217 Identities=27% Similarity=0.515 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC----CHHH
Q 000689 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY----NLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~----~l~~ 1156 (1350)
|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13699999999999999999999999999999999999999999999999998764 4567
Q ss_pred hhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHHH----HHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1157 LRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESEI----IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1157 lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
+|++|+|+||+| .+|..|++||+.++.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986421 1233332 23333333321 1234455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .|+|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 48999999999999865 999999999999999999998
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+..
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 754
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=372.14 Aligned_cols=224 Identities=27% Similarity=0.508 Sum_probs=191.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~l 1154 (1350)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 369999999999999999999999999999999999875 489999999999875 346
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|.+|++||+.++.. .. + ++.+.++++.+++.+++..+ ....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999986521 11 1 23456667777776655421 3345668999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 899999999999999999999
Q ss_pred hhcCCCchhH
Q 000689 1307 LKNNPDGCYA 1316 (1350)
Q Consensus 1307 l~~~~~g~y~ 1316 (1350)
... +.+.|.
T Consensus 233 ~~~-~~~~~~ 241 (250)
T PRK14266 233 FIN-PKDKRT 241 (250)
T ss_pred HhC-CCChHH
Confidence 765 455544
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=366.21 Aligned_cols=207 Identities=27% Similarity=0.466 Sum_probs=173.4
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++|+|++ .++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 36999999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|++|++.+|.. |++||+.+... ..+.++..+. +.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999987421 1111111111 11222222 333334455678999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998777999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=372.46 Aligned_cols=218 Identities=29% Similarity=0.476 Sum_probs=187.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~--~l 1154 (1350)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3699999999999999999999999999999999999875 799999999998653 44
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||++.+|..|++||+.++.. .. + .+++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 577889999999999999999999986521 11 1 2334566666666433322 23345678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999866 999999999999999999999
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
+..
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 765
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=374.48 Aligned_cols=220 Identities=31% Similarity=0.497 Sum_probs=186.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 69999999999742 23599999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCC-cc-cccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 000689 507 GLVSQEPA-LF-ATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~~-lf-~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~ 582 (1350)
+||+|+|. +| ..|+++|+.++... ...++..+. +.+.+..+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 44 56899999886432 122222111 11222322 4444455677899999999999999999
Q ss_pred CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 7999999999999888999999999999999999998654
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=374.75 Aligned_cols=221 Identities=31% Similarity=0.522 Sum_probs=186.7
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS-- 496 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~-- 496 (1350)
..+.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3457999999999963 3599999999999999999999999999999999999984 89999999999864
Q ss_pred CCHHHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCCh
Q 000689 497 LKLRWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569 (1350)
Q Consensus 497 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 569 (1350)
.+..++|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ .+.+..+..+.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCH
Confidence 3456778899999999999988999999876321 1 11 11233333332222 222456777889999
Q ss_pred HHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecCh
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 570 Gqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~ 648 (1350)
|||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999999998778999999999999865 999999999999999999
Q ss_pred HHHHhc
Q 000689 649 DELIAK 654 (1350)
Q Consensus 649 ~~l~~~ 654 (1350)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 998754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=377.00 Aligned_cols=221 Identities=30% Similarity=0.536 Sum_probs=187.9
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEECCeeCCCCCHHHH
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS---GQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~i~g~~~~~~~~~~~ 502 (1350)
++|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 479999999999642 2369999999999999999999999999999999999999998 899999999987777778
Q ss_pred hccEEEEccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 503 RQQIGLVSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 503 r~~i~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
++++|||+|+|. +++.|+.|||.++... .+.++..+. +.+.+..+ |+.........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-----VRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5678999999886432 223222111 12223333 555556677789999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988753 8999999999999988999999999999999999988754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=372.97 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=186.0
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--C
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--L 497 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~ 497 (1350)
...|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 347999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChH
Q 000689 498 KLRWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGG 570 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 570 (1350)
+...+|+.|+||+|++.+|..|++||+.++... . ..++ +.++++..++.+ +.++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHH
Confidence 455678899999999999989999999886321 1 1111 222222322221 2234567788899999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred HHHhc
Q 000689 650 ELIAK 654 (1350)
Q Consensus 650 ~l~~~ 654 (1350)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=369.91 Aligned_cols=222 Identities=29% Similarity=0.460 Sum_probs=187.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 505 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4899999999974 36999999999999999999999999999999999999999999999999988776654 4567
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCC-H-HH---HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDAD-L-NE---IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~-~-~~---~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
++|++|++.+|.+ |++||+.++..... . .. .........+.+.+..+ |++........+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999999986 99999988642100 0 00 00001112234455555 6666677788899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|++.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998778999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=382.24 Aligned_cols=217 Identities=31% Similarity=0.491 Sum_probs=182.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3599999999999999999999999999999999999999999999999998654 35568899
Q ss_pred EEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||+|++.++. .|++||+.+... ..+..+..+.+ .+.+..+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 599999975321 12222222211 1222222 44444555667899999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999874 58999999999999975 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=378.88 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC----CHH
Q 000689 1082 EVELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY----NLK 1155 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~----~l~ 1155 (1350)
.|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 346
Q ss_pred HhhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1156 SLRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..|+.++|+||+| .+|..|++|||.++.. ..+.++ +.++++..++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6788999999998 5788899999986421 223332 333344444421 123344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 58999999999999865 99999999999999999999
Q ss_pred Hhhc
Q 000689 1306 LLKN 1309 (1350)
Q Consensus 1306 Ll~~ 1309 (1350)
++..
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=379.92 Aligned_cols=220 Identities=29% Similarity=0.505 Sum_probs=182.9
Q ss_pred CCcEEEEEEEEECCCCC--CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC----C-
Q 000689 1080 RGEVELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK----Y- 1152 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~----~- 1152 (1350)
.+.|+++|++++|+.++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997532 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHhhcccEEEccCC--ccCcccHHHHhccCCC--CCCHHHHH----HHHHHhccHHHHhcCCCCccccccCCCCCCCh
Q 000689 1153 NLKSLRRHMAIVPQEP--CLFASTIYENIAYGHE--SATESEII----EAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1153 ~l~~lR~~i~~VpQdp--~LF~gTIreNL~~~~~--~~td~ei~----~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
+...+|++++|+||+| .+|..|++||+.++.. ....++.. +.++..++ |++ .......+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCH
Confidence 4567888999999998 4778899999986532 12333322 22222222 211 23345568999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 38999999999998855 9999999999999999
Q ss_pred ChhHHhhc
Q 000689 1302 SHSHLLKN 1309 (1350)
Q Consensus 1302 t~~eLl~~ 1309 (1350)
++++++..
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99998754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=362.71 Aligned_cols=199 Identities=34% Similarity=0.575 Sum_probs=168.9
Q ss_pred EEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEE
Q 000689 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508 (1350)
Q Consensus 429 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 508 (1350)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 369999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EccCC--CcccccHHHHhhcCCCCCC--HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 509 VSQEP--ALFATTIKENILLGRPDAD--LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 509 v~Q~~--~lf~~ti~eNi~~g~~~~~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
++|++ .++..|++||+.++.+... .+++.++++.. |++........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999988643222 12333333333 444445556678999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhh-cCEEEEEeCCEEE
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRF-MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVS 643 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~ 643 (1350)
|++|||||||++||+.+.+.+.+.|+++ .+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 458999999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=378.00 Aligned_cols=220 Identities=31% Similarity=0.525 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCC--CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC----CHHH
Q 000689 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL----KLRW 501 (1350)
Q Consensus 428 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~----~~~~ 501 (1350)
|+++||+|+|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhccEEEEccCC--CcccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHHH
Q 000689 502 LRQQIGLVSQEP--ALFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 502 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri~ 576 (1350)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++..+. +.+.+..+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 6788899999987532 1223322221 12333333 554 3456778899999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 48999999999999865 999999999999999999988653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=371.87 Aligned_cols=213 Identities=29% Similarity=0.476 Sum_probs=186.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCcc-CcccHHHHhccCCCCC------CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCL-FASTIYENIAYGHESA------TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~L-F~gTIreNL~~~~~~~------td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+ +..|++||+.++.... .++.+.++++..++.++.. .....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998753211 1234566666666655433 2346799999999999999
Q ss_pred hc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1236 FV------RKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1236 LL------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|+ .+|++|||||||++||+.+...+.+.|++.. +|+|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 48999999999999874 999999999999999999998
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=376.57 Aligned_cols=222 Identities=31% Similarity=0.498 Sum_probs=186.0
Q ss_pred ceEEEEEEEEECCCCC---CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCC-HHH
Q 000689 426 GLIELKHVDFSYPSRP---EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-LRW 501 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~-~~~ 501 (1350)
.+|+++|++|+|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.. ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 3699999999997421 246999999999999999999999999999999999999999999999999987643 355
Q ss_pred HhccEEEEccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHH
Q 000689 502 LRQQIGLVSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577 (1350)
Q Consensus 502 ~r~~i~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~i 577 (1350)
+|+.+|||+|+|. ++..|+.||+.|+... .+..+..+. +.+.+..+ |+.........+||||||||++|
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHH
Confidence 7889999999984 6667999999986321 122222111 12223333 55555566678999999999999
Q ss_pred HHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 578 ARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++..+
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999999884 38999999999999988999999999999999999998754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=368.31 Aligned_cols=214 Identities=31% Similarity=0.485 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-HhccE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQI 506 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 506 (1350)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 36999999999999999999999999999999999999999999999999998776654 46789
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
+|++|++.+|.. |++||+.++.......+ .+. ..+.+..+ ++++........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999987643221111 010 01112221 12344456677899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998753 7999999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=372.48 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=184.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999888877888899
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC----C--HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA----D--LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~----~--~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
+|++|++.++.+ |+.||+.++.... . .++..+ .+.+.+..+ |++......+..||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA-----RVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHH-----HHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHH
Confidence 999999988876 9999999863210 0 011100 111222222 4555556677899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|++.+|++|||||||++||+++.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998875 48999999999999865 99999999999999999988864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=371.68 Aligned_cols=219 Identities=27% Similarity=0.490 Sum_probs=185.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~~ 499 (1350)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 6999999999963 369999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCCC--C---HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDA--D---LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~--~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 574 (1350)
..+|++++||+|++.+|+.|++||+.++.... . .+++.++++.+++.+++ +...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998864311 1 12223333444433322 233566788999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEEE
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ---------QGSVSE 644 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~~ 644 (1350)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999865 99999998 899999
Q ss_pred ecChHHHHhcc
Q 000689 645 IGTHDELIAKG 655 (1350)
Q Consensus 645 ~g~~~~l~~~~ 655 (1350)
.|+++|+...+
T Consensus 240 ~~~~~~~~~~~ 250 (264)
T PRK14243 240 FDRTEKIFNSP 250 (264)
T ss_pred eCCHHHHHhCC
Confidence 99999997653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=376.57 Aligned_cols=213 Identities=30% Similarity=0.490 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCC--CCCHHHhhcc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR--KYNLKSLRRH 1160 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~--~~~l~~lR~~ 1160 (1350)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 36999999999999999999999999999999999999999999999999985 3345678889
Q ss_pred cEEEccCCc--cCcccHHHHhccCCC--CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEPC--LFASTIYENIAYGHE--SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp~--LF~gTIreNL~~~~~--~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
++||||+|. +|..|+.+|+.++.. ..+.+ ++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 577899999976421 12222 3445566666654432 2346799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||||+.+|+||||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999864 58999999999999965 999999999999999999998764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=369.93 Aligned_cols=217 Identities=25% Similarity=0.436 Sum_probs=186.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 505 (1350)
+|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999963 36999999999999999999999999999999999999999999999999998776543 5778
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCC---CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPD---ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
++|++|++.+|.. |++||+.++... .+.++. ...+.+.+..+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 111111 12234555555 676667778889999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+.+|++|||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999988765 99999999999999999998864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.77 Aligned_cols=201 Identities=37% Similarity=0.604 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH---Hhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK---SLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~---~lR~ 1159 (1350)
|+++|++++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23699999999999999999999999999999999999999999999999999877643 4688
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCC------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHE------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
+++|+||+|.+|. .|++||+.++.. ...+++++++++..++.++....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 699999986421 112345677777777766554433 4799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCe
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGK 1296 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~Gr 1296 (1350)
||||+++|++|||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999864 58999999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=373.92 Aligned_cols=218 Identities=25% Similarity=0.435 Sum_probs=186.7
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCCCC-HH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRKYN-LK 1155 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~~~-l~ 1155 (1350)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999964 3699999999999999999999999999999999999986 6999999999987763 45
Q ss_pred HhhcccEEEccCCccCcccHHHHhccCCC---CCCHHHHH----HHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHE---SATESEII----EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~gTIreNL~~~~~---~~td~ei~----~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
.+|++++|+||+|.+|..|+++|+.++.. ..+++++. +.++..++.+ .+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986531 13444432 2333333322 2223445667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|++|||||+.+|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987767899999999999866 9999999999999999999998
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 65
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=362.84 Aligned_cols=203 Identities=31% Similarity=0.504 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 3699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
||+|++.+|. .|++||+.++.. ..+.+++.++++.. |++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998884 699999987532 12233344444443 344444556778999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 48999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=374.00 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=182.0
Q ss_pred EEEEEEEEECCCC------CCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH
Q 000689 1083 VELKHVDFSYPSR------PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~ 1156 (1350)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---hhcccEEEccCCc--cC-cccHHHHhccCCC---CC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1157 ---LRRHMAIVPQEPC--LF-ASTIYENIAYGHE---SA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1157 ---lR~~i~~VpQdp~--LF-~gTIreNL~~~~~---~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
+|++++|+||+|. ++ ..|++||+.++.. .. .++++.++++..++.+ ......+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4699999964311 11 1233444455544421 12344556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEe
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~ 1300 (1350)
||||||++|||||+.+|+||||||||++||+++...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 8999999999999975 999999999999999
Q ss_pred cChhHHhhc
Q 000689 1301 GSHSHLLKN 1309 (1350)
Q Consensus 1301 Gt~~eLl~~ 1309 (1350)
|++++++..
T Consensus 233 g~~~~~~~~ 241 (265)
T TIGR02769 233 CDVAQLLSF 241 (265)
T ss_pred CCHHHHcCC
Confidence 999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=369.15 Aligned_cols=211 Identities=36% Similarity=0.611 Sum_probs=184.7
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+. .++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999964 369999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccCcc-cHHHHhccCCC------CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE------SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~------~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |+++|+.++.. ...++++.++++..++.+++...| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 112345666677777766655443 5799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++++|++|||||||++||+.+.+.+.+.|++..+ |+|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 8999999999999865 999999999999999999999765
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=370.76 Aligned_cols=213 Identities=28% Similarity=0.479 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCC------CCCHHH
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR------KYNLKS 1156 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~------~~~l~~ 1156 (1350)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 36999999999999999999999999999999999999999999999999873 123467
Q ss_pred hhcccEEEccCCccCcc-cHHHHhccCC---CCCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1157 LRRHMAIVPQEPCLFAS-TIYENIAYGH---ESATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1157 lR~~i~~VpQdp~LF~g-TIreNL~~~~---~~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
+|++++|+||+|.+|.+ |++||+.++. ..... +++.+.++..++.++ ......+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 78899999999999875 9999997421 11222 223344444444433 34445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
|++||||++++|+||||||||++||+++...+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999965 999999999999999999987
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=373.63 Aligned_cols=229 Identities=25% Similarity=0.400 Sum_probs=190.9
Q ss_pred cEEEEEEEEECCCC------CCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHH
Q 000689 1082 EVELKHVDFSYPSR------PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLK 1155 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~ 1155 (1350)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HhhcccEEEccCCc--cCc-ccHHHHhccCC---CCC----CHHHHHHHHHHhccH-HHHhcCCCCccccccCCCCCCCh
Q 000689 1156 SLRRHMAIVPQEPC--LFA-STIYENIAYGH---ESA----TESEIIEAARLANAD-KFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~--LF~-gTIreNL~~~~---~~~----td~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
..|++++|+||+|. ++. -|+.+|+.+.. ... .++++.++++..++. +... ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 66788999999985 444 38889886421 111 124566777777773 3322 22357999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .|+|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 38899999999999987 9999999999999999
Q ss_pred ChhHHhhcCCCchhHHHHHH
Q 000689 1302 SHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1302 t~~eLl~~~~~g~y~~l~~~ 1321 (1350)
+++++........+++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 99999876334556677764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=383.78 Aligned_cols=217 Identities=31% Similarity=0.500 Sum_probs=182.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.... ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 6999999999973 35999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
|||||++.++. .|++||+.+... ..+..+..+.+ .+.+..+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999874 599999985321 12222222211 1222222 34434455566899999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999875 48999999999999975 999999999999999999998754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=375.07 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=181.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC--CCCHHHHhc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK--SLKLRWLRQ 504 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~--~~~~~~~r~ 504 (1350)
+|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 4789999999963 35999999999999999999999999999999999999999999999999985 334456788
Q ss_pred cEEEEccCCC--cccccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 505 QIGLVSQEPA--LFATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 505 ~i~~v~Q~~~--lf~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+|+||+|++. ++..|+.+|+.++.. ..+.++..+. +.+.+..+ |++........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 9999999985 567799999987521 1222222111 12223332 44444455678999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999875 58999999999999865 999999999999999999888654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=373.98 Aligned_cols=213 Identities=31% Similarity=0.485 Sum_probs=183.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 6999999999963 3699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC-------C---HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA-------D---LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~-------~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
+|++|++.++.. |+.||+.++.... . .+++.++++.. |++........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-----------GLKPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCCHHHHHHH
Confidence 999999877655 9999999863211 0 11222333333 444445556678999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 38999999999999865 9999999999999999998876
Q ss_pred h
Q 000689 653 A 653 (1350)
Q Consensus 653 ~ 653 (1350)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=367.25 Aligned_cols=214 Identities=37% Similarity=0.561 Sum_probs=176.5
Q ss_pred eEEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH---HHH
Q 000689 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL---RWL 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~---~~~ 502 (1350)
.|+++||+++|+++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 378999999996431 1269999999999999999999999999999999999999999999999999987763 567
Q ss_pred hccEEEEccCC--Ccc-cccHHHHhhcCCCCC---CHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHH
Q 000689 503 RQQIGLVSQEP--ALF-ATTIKENILLGRPDA---DLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 503 r~~i~~v~Q~~--~lf-~~ti~eNi~~g~~~~---~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri 575 (1350)
|++++|++|++ .++ ..|++||+.++.... ..++..+.+ +.+.+..+ |+. ........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 88999999999 344 469999998642111 111111100 12334444 553 456777889999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEEEec
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g 646 (1350)
+|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998853 899999999999987 49999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=372.83 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~l 1154 (1350)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHhhcccEEEccCCccCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1155 KSLRRHMAIVPQEPCLFA-STIYENIAYGHE--S-AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~-gTIreNL~~~~~--~-~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
..+|+.++|++|++.+|. .|++||+.++.. . .+ ++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999887 599999976421 1 11 233455666666643322 22344556899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe------CCeEEE
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID------DGKVAE 1299 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~------~GrIvE 1299 (1350)
|||++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988778999999999999865 99999997 899999
Q ss_pred ecChhHHhhc
Q 000689 1300 LGSHSHLLKN 1309 (1350)
Q Consensus 1300 ~Gt~~eLl~~ 1309 (1350)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999865
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.82 Aligned_cols=198 Identities=29% Similarity=0.522 Sum_probs=170.3
Q ss_pred EEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEE
Q 000689 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163 (1350)
Q Consensus 1084 ~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~ 1163 (1350)
+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 36999999999999999999999999999999999999999999999998874 46889999
Q ss_pred EccCCcc---CcccHHHHhccCCCC----------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1164 VPQEPCL---FASTIYENIAYGHES----------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1164 VpQdp~L---F~gTIreNL~~~~~~----------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
|||+|.+ |..|++||+.++... ..++++.++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999976 568999999875321 112356667777777655443 3357999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
+|||||+.+|++|||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999865 68999999999999966 9999999986 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=362.26 Aligned_cols=210 Identities=29% Similarity=0.468 Sum_probs=187.7
Q ss_pred EEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH----HHhhc
Q 000689 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL----KSLRR 1159 (1350)
Q Consensus 1084 ~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l----~~lR~ 1159 (1350)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567999999744 469999999999999999999999999999999999999999999999999876542 34577
Q ss_pred ccEEEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1160 HMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
.++|++|+|.+|+.|++|||.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 456667788888999999999999999999988999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHH--HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCe
Q 000689 1240 AEIMLLDEATSALDAESERSVQE--ALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGK 1296 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~--~L~~~~-~g~TvI~IaHRlsti~~~DrI~Vl~~Gr 1296 (1350)
|+||||||||++||+.+...+.+ .++... .|.|+|++||+++.+..||+|++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455443 4789999999999998899999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=369.47 Aligned_cols=219 Identities=30% Similarity=0.493 Sum_probs=184.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--C
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSL--K 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~--~ 498 (1350)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 36899999999963 3599999999999999999999999999999999999875 799999999998643 3
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCCC---CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDA---DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|+.++|++|++.+|+.|++||+.++.... +.+ ++.++++.+++. +++.......+..|||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW-------DEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc-------hhhhhHhhCCcccCCHHH
Confidence 456788899999999999999999998763211 111 122233333221 122334566788999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999876 99999999999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=342.85 Aligned_cols=220 Identities=31% Similarity=0.485 Sum_probs=192.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 505 (1350)
+++++|++-.|+. .++|++|||++++||+++|+|+||+|||||++.|+|+.+|.+|+|.++|+|++..+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 5899999999973 46999999999999999999999999999999999999999999999999999998765 5778
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|+||||.-.+|+. ||+||+.+|......++.. ....++...-+| -+....+.++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 9999999884322211111 111233445566 366778889999999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|++|+|||||.+|-|.-.+.|.+.|+++.+ |.||++|-++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999974 6799999999998765 999999999999999999999875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=364.54 Aligned_cols=202 Identities=31% Similarity=0.531 Sum_probs=173.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHhhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSLRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~lR~ 1159 (1350)
|+++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 369999999999999999999999999999999999999999999999999987754 35788
Q ss_pred ccEEEccCCccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCLFA-STIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~-gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
.++||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 9999999999987 499999986521 112 23456666666665544333 35799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeE
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrI 1297 (1350)
||||+++|+||||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999864 58999999999999976 999999999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=372.65 Aligned_cols=218 Identities=30% Similarity=0.529 Sum_probs=181.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCCCC--HH
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSLK--LR 500 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~~~--~~ 500 (1350)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 369999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhccEEEEccCCCcccccHHHHhhcCCC--CC--CHHHHHHHHHHhchHHHHhcCCCCc----cchhcCCCCCCChHHH
Q 000689 501 WLRQQIGLVSQEPALFATTIKENILLGRP--DA--DLNEIEEAARVANAYSFIIKLPDGF----DTQVRERGVQLSGGQK 572 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~--~~~~~~~~~~~~~~~~~i~~lp~g~----~t~~~~~g~~LSgGqk 572 (1350)
.+|+.++||+|++.+|+.|++||+.++.. .. ..++..+ .+.+.+..+ |+ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 57889999999999998999999987621 11 1111111 111222222 33 2345667889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred Hhcc
Q 000689 652 IAKG 655 (1350)
Q Consensus 652 ~~~~ 655 (1350)
...+
T Consensus 236 ~~~~ 239 (251)
T PRK14244 236 FKNP 239 (251)
T ss_pred hcCC
Confidence 8653
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=370.40 Aligned_cols=218 Identities=27% Similarity=0.510 Sum_probs=184.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~--~~ 499 (1350)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 6999999999963 3599999999999999999999999999999999999763 489999999998765 45
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCCC---CHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDA---DLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
...|+.++|++|++.+|+.|++||+.++.... ...+ +.++++..+ +.+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence 56788899999999999899999999864211 1111 222222222 222334556778889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999965 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=364.04 Aligned_cols=201 Identities=41% Similarity=0.681 Sum_probs=172.6
Q ss_pred EEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEE
Q 000689 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI 1163 (1350)
Q Consensus 1084 ~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~ 1163 (1350)
+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 1469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1164 VPQEP--CLFASTIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1164 VpQdp--~LF~gTIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
+||+| .++..|++||+.++.. ..+ ++++.+.++..++.+++. .....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999986421 122 223445555555554433 3446799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCe
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGK 1296 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~Gr 1296 (1350)
|+++|++|||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=373.17 Aligned_cols=215 Identities=27% Similarity=0.456 Sum_probs=188.6
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcc
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~ 1160 (1350)
-.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36999999999974 369999999999999999999999999999999999999999999999999988888888899
Q ss_pred cEEEccCCccCc-ccHHHHhccCC-CC---------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1161 MAIVPQEPCLFA-STIYENIAYGH-ES---------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1161 i~~VpQdp~LF~-gTIreNL~~~~-~~---------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
++|+||++.+|. .|++||+.++. +. ..++.+.++++..++.++.. ....+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 999999998875 69999998652 10 11234666777777765543 3446799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
++||||++++|++|||||||++||+.+...+.+.|++..+ |+|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999998865 999999999999999999998
Q ss_pred hhc
Q 000689 1307 LKN 1309 (1350)
Q Consensus 1307 l~~ 1309 (1350)
...
T Consensus 232 ~~~ 234 (265)
T PRK10253 232 VTA 234 (265)
T ss_pred hhH
Confidence 743
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=370.26 Aligned_cols=218 Identities=23% Similarity=0.459 Sum_probs=184.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~ 1160 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 36999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred cEEEccCCccCcc-cHHHHhccCCC---CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHE---SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~---~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1236 (1350)
++|+||++.+|.. |++||+.++.. ..+.++.. ..+.++++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998874 99999986531 12222211 1223444444 454445556678999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1237 Lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+++|++|||||||++||+.+...+.+.+++.. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998765 48999999999988755 999999999999999999998753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=372.60 Aligned_cols=219 Identities=29% Similarity=0.514 Sum_probs=188.1
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----ccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~--~~ 1153 (1350)
+.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999964 25999999999999999999999999999999999999985 8999999999853 35
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
...+|+.++|+||++.+|..|++||+.++.. .. + ++.+.++++..++.+++.. ..+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986421 11 2 2335666777776554432 2345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC-----CeEE
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDD-----GKVA 1298 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~-----GrIv 1298 (1350)
|||++|||||+++|+||||||||++||+++...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999865 999999999 9999
Q ss_pred EecChhHHhhc
Q 000689 1299 ELGSHSHLLKN 1309 (1350)
Q Consensus 1299 E~Gt~~eLl~~ 1309 (1350)
+.|+++++...
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=367.42 Aligned_cols=211 Identities=31% Similarity=0.526 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+. .++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999976653 478899
Q ss_pred EEccCCccCcc-cHHHHhccCCCC--CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHES--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~--~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |++||+.++... .+ ++++.++++..++.++..+ ...+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999865321 11 2345555666665544433 335799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998654 7999999999999866 999999999999999999999754
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=351.45 Aligned_cols=178 Identities=37% Similarity=0.647 Sum_probs=165.2
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEEEec
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~g 646 (1350)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=372.76 Aligned_cols=220 Identities=29% Similarity=0.493 Sum_probs=186.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCCC-HH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSLK-LR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~~-~~ 500 (1350)
.++++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 6899999999973 3699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhccEEEEccCCCcccccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhc--CCCCccchhcCCCCCCChHHHHHH
Q 000689 501 WLRQQIGLVSQEPALFATTIKENILLGRP---DADLNEIEEAARVANAYSFIIK--LPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~--lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
.+|++++|++|++.+|+.|++||+.++.. ..+.++..+.+ .+.+.. +++.+.+.....+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999987632 12333332211 112222 222233456677889999999999
Q ss_pred HHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 576 ~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988767899999999999875 999999999999999999999865
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=369.16 Aligned_cols=218 Identities=32% Similarity=0.515 Sum_probs=182.4
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~~~ 499 (1350)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 369999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+|+.++|++|++.+|+.|++||+.++... . ..+ ++.++++..+++. .........+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 5678889999999999999999999876321 1 111 1222222222210 112234567789999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 765
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=370.43 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=187.2
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCC-CCCHH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIR-KYNLK 1155 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~-~~~l~ 1155 (1350)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 3699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HhhcccEEEccCCccCcccHHHHhccCCC--CCC-----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHH
Q 000689 1156 SLRRHMAIVPQEPCLFASTIYENIAYGHE--SAT-----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~t-----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1228 (1350)
.+|+.++|+||+|.+|..|++||+.++.. ... ++++.++++.+++.+.+. ........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999986531 111 123445555666544332 2334456689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1229 rlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999987
Q ss_pred hc
Q 000689 1308 KN 1309 (1350)
Q Consensus 1308 ~~ 1309 (1350)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=363.20 Aligned_cols=207 Identities=32% Similarity=0.571 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999974 3599999999999999999999999999999999999999999999999998765443 46799
Q ss_pred EEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|++|++.+|. .|++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 5999999876321 12222211 112333333 566666777789999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=380.53 Aligned_cols=213 Identities=26% Similarity=0.414 Sum_probs=180.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EEEccCCccCc-ccHHHHhccCC--CCCCHHHH----HHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGH--ESATESEI----IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~--~~~td~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+|+||++.+|. .|++||+.+.. ...+..+. .++++..++ ++.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999998885 69999997421 11233332 233333333 22334433 569999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||+++|++|||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999864 58999999999999975 999999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=370.83 Aligned_cols=223 Identities=27% Similarity=0.462 Sum_probs=187.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH-hcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL-RQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 505 (1350)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 6999999999963 369999999999999999999999999999999999999999999999999987775543 556
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCCCH----------HHH--HHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDADL----------NEI--EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~----------~~~--~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
++|++|++.+|.. |++||+.++...... ... ........+.+.+..+ |++......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999976 999999986321100 000 0001111234455555 777778888999999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999998753 7899999999999866 9999999999999999998
Q ss_pred HHHhc
Q 000689 650 ELIAK 654 (1350)
Q Consensus 650 ~l~~~ 654 (1350)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=372.31 Aligned_cols=220 Identities=28% Similarity=0.495 Sum_probs=189.8
Q ss_pred CCcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCC----
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIR---- 1150 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~---- 1150 (1350)
.+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999964 3699999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHhhcccEEEccCCccCcccHHHHhccCCC--C-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1151 KYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE--S-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1151 ~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
..+...+|++++|+||+|.+|.+|++||+.++.. . ..++++.++++.+++.+.+ ....+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 3345678899999999999999999999986521 1 1234566677766664322 233455567899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecC
Q 000689 1224 GGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1224 gGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt 1302 (1350)
||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999999965 99999999999999999
Q ss_pred hhHHhhc
Q 000689 1303 HSHLLKN 1309 (1350)
Q Consensus 1303 ~~eLl~~ 1309 (1350)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9999765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=376.08 Aligned_cols=225 Identities=28% Similarity=0.478 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCCC--CH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRKY--NL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~~--~l 1154 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999964 359999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++||||+|.+|..|++|||.++.. .. + ++++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 467889999999999998999999987521 11 1 223455566655533221 122345567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++|||||+.+|++|||||||++||+++...+.+.|+++.+++|||+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999999
Q ss_pred hhcCCCchhHH
Q 000689 1307 LKNNPDGCYAR 1317 (1350)
Q Consensus 1307 l~~~~~g~y~~ 1317 (1350)
.++ +...|.+
T Consensus 269 ~~~-~~~~~~~ 278 (286)
T PRK14275 269 FTN-PKDRMTE 278 (286)
T ss_pred HhC-CCcHHHH
Confidence 875 3444444
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=371.92 Aligned_cols=212 Identities=25% Similarity=0.418 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCc-cCcccHHHHhccCCCC----------CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHH
Q 000689 1163 IVPQEPC-LFASTIYENIAYGHES----------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1163 ~VpQdp~-LF~gTIreNL~~~~~~----------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrla 1231 (1350)
|+||+|. .+..|++||+.++... ..++++.++++..++.+... .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999995 4568999999875310 11224566666666654432 344679999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHHhh
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 iARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eLl~ 1308 (1350)
||||++.+|+++||||||++||+.+...+.+.|++.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 4789999999999995 499999999999999999998864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=369.52 Aligned_cols=217 Identities=28% Similarity=0.450 Sum_probs=184.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 5899999999974 3599999999999999999999999999999999999999999999999999888777788899
Q ss_pred EEEccCCCc-ccccHHHHhhcCCCCC--CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhc-
Q 000689 507 GLVSQEPAL-FATTIKENILLGRPDA--DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML- 582 (1350)
Q Consensus 507 ~~v~Q~~~l-f~~ti~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~- 582 (1350)
+|++|++.+ +..|++||+.++.... +.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5679999998864211 1111111 112233333 5555566677899999999999999999
Q ss_pred -----CCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 583 -----KNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 583 -----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 48999999999999875 99999999999999999988864
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=364.32 Aligned_cols=213 Identities=32% Similarity=0.499 Sum_probs=181.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 6999999999963 3599999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
+|++|++.+|+.|++||+.++.......... ..+.+.+..+ |+. +.....+.+||||||||++|||||+.+|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999889999998742100000000 1122344444 553 4567788999999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEe-CCEEEEecChH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQ-QGSVSEIGTHD 649 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~vl~-~G~i~~~g~~~ 649 (1350)
++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+..||+|++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999874 3889999999999998899999994 67777888885
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=368.39 Aligned_cols=204 Identities=31% Similarity=0.478 Sum_probs=175.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 35999999999999999999999999999999999999999999999998753 457789
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
+|++|++.+|+ .|++||+.++......+++. +.+..+ |++......+.+||||||||++|||||+.+|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL---------QALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 59999999864221122222 233333 5555566777899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998874 37999999999999865 9999999999999988754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=364.98 Aligned_cols=209 Identities=35% Similarity=0.497 Sum_probs=174.8
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997411 1469999999999999999999999999999999999999999999999998863 35789
Q ss_pred EEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
+||+|++.+|. .|++||+.++... ...++.. ..+.+.+..+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 5999999875321 1111111 1123344444 56656667778999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCh
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQ--QGSVSEIGTH 648 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~i~~~g~~ 648 (1350)
+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999874 38999999999998865 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=369.90 Aligned_cols=218 Identities=29% Similarity=0.454 Sum_probs=190.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~l 1154 (1350)
.+.+++++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999953 3699999999999999999999999999999999999986 79999999999864 344
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC-----CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE-----SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~-----~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
..+|++++|+||+|.+|..|++|||.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987531 1123467778888877655432 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe--------CCeEEEe
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID--------DGKVAEL 1300 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~--------~GrIvE~ 1300 (1350)
++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999999865 99999996 8999999
Q ss_pred cChhHHhhc
Q 000689 1301 GSHSHLLKN 1309 (1350)
Q Consensus 1301 Gt~~eLl~~ 1309 (1350)
|+++++++.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999865
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=368.83 Aligned_cols=217 Identities=29% Similarity=0.495 Sum_probs=184.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCC------CCCHH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK------SLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~------~~~~~ 500 (1350)
+|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4889999999964 35999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhccEEEEccCCCcccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHH
Q 000689 501 WLRQQIGLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~ 576 (1350)
.+|++++|++|++.+|.. |++|||.++.. ....++.. ..+.+.+..+ |++........+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 678899999999999875 99999975311 11222211 1234455555 6776777788899999999999
Q ss_pred HHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 577 iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
|||||+.+|++|||||||++||+++...+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999999875 48999999999999965 99999999999999999887653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=373.76 Aligned_cols=219 Identities=32% Similarity=0.529 Sum_probs=183.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC--CCHHHHhc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS--LKLRWLRQ 504 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~--~~~~~~r~ 504 (1350)
+|+++||+++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3789999999963 2359999999999999999999999999999999999999999999999999852 23456788
Q ss_pred cEEEEccCC--CcccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 505 QIGLVSQEP--ALFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 505 ~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
.|+|++|++ .+|..|+.|||.++... .+.++..+. +.+.+..+ |+.......+.+||||||||++||||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999997 57788999999876321 222222111 12233333 44444556678999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+.+|++|||||||++||+.+...+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999875 48999999999999875 999999999999999999998753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=375.20 Aligned_cols=214 Identities=32% Similarity=0.555 Sum_probs=183.2
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC--CCHHHhhcc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK--YNLKSLRRH 1160 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~--~~l~~lR~~ 1160 (1350)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2369999999999999999999999999999999999999999999999999852 234567899
Q ss_pred cEEEccCC--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEP--CLFASTIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp--~LF~gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
|+|+||+| .+|..|++||+.++.. ..+. +++.++++..++.++.. ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999998 4788999999986431 1222 33455666666544322 2345799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|||++.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 48999999999999875 999999999999999999998754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=367.85 Aligned_cols=218 Identities=29% Similarity=0.523 Sum_probs=184.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCC-CCCHH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIK-SLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~-~~~~~ 500 (1350)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5899999999973 3599999999999999999999999999999999999986 5999999999985 34566
Q ss_pred HHhccEEEEccCCCcccccHHHHhhcCCCC--CC-HH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 501 WLRQQIGLVSQEPALFATTIKENILLGRPD--AD-LN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~-~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
.+|+.++|++|++.+|..|++||+.++... .. .+ ++.++++..++. +++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence 788899999999999999999999876321 11 11 122222222222 22334556777899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999998886
Q ss_pred hc
Q 000689 653 AK 654 (1350)
Q Consensus 653 ~~ 654 (1350)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=371.57 Aligned_cols=221 Identities=22% Similarity=0.428 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHh-hcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL-RRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~l-R~~ 1160 (1350)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 369999999999999999999999999999999999999999999999999988876554 456
Q ss_pred cEEEccCCccCcc-cHHHHhccCCCCCCH--------------HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChh
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHESATE--------------SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGG 1225 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~~~td--------------~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1225 (1350)
++|+||+|.+|.+ |++||+.++.....+ .+..+. ...+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 999999875311100 000000 11123344443 4555556667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecC
Q 000689 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1226 QrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt 1302 (1350)
||||++||||++.+|+||||||||++||+.+.+.+.+.|++..+ |+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998643 7899999999999866 99999999999999999
Q ss_pred hhHHhhc
Q 000689 1303 HSHLLKN 1309 (1350)
Q Consensus 1303 ~~eLl~~ 1309 (1350)
++++...
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9998643
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=369.90 Aligned_cols=225 Identities=29% Similarity=0.506 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC-----ccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS-----SGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~--~~l 1154 (1350)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 36999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHhhcccEEEccCCccCcc-cHHHHhccCCC--CC-CHHHHHHH----HHHhccHHHHhcCCCCccccccCCCCCCChhH
Q 000689 1155 KSLRRHMAIVPQEPCLFAS-TIYENIAYGHE--SA-TESEIIEA----ARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~g-TIreNL~~~~~--~~-td~ei~~a----l~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1226 (1350)
..+|++++|+||+|.+|.. |++||+.++.. .. .+++..+. ++..++.+.+ ++.++. ...+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKT----PATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcC----CcccCCHHH
Confidence 5788999999999999884 99999986421 11 23333222 3333333222 223333 356799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhH
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSH 1305 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~e 1305 (1350)
|||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999986 99999999999999999999
Q ss_pred HhhcCCCchhHH
Q 000689 1306 LLKNNPDGCYAR 1317 (1350)
Q Consensus 1306 Ll~~~~~g~y~~ 1317 (1350)
++.. +...|.+
T Consensus 234 ~~~~-~~~~~~~ 244 (252)
T PRK14272 234 LFTN-PRDERTE 244 (252)
T ss_pred HHhC-cCcHHHH
Confidence 9876 4544543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=371.83 Aligned_cols=220 Identities=30% Similarity=0.537 Sum_probs=183.5
Q ss_pred cceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCC--C
Q 000689 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKS--L 497 (1350)
Q Consensus 425 ~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~--~ 497 (1350)
...|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 346999999999963 359999999999999999999999999999999999997 689999999999864 3
Q ss_pred CHHHHhccEEEEccCCCcccccHHHHhhcCCCC--CC---HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 498 KLRWLRQQIGLVSQEPALFATTIKENILLGRPD--AD---LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~---~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
+...++++++||+|++.+|..|++||+.++... .. .+++.++++..++. ..+.....+++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALW-------DEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC-------chhHHHHhCCcccCCHHHH
Confidence 455678899999999999988999999875321 11 11222233222221 1112345677889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEE-EEeCCEEEEecChHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVA-VLQQGSVSEIGTHDE 650 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-vl~~G~i~~~g~~~~ 650 (1350)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998767899999999999876 99975 579999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
+..+
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=359.89 Aligned_cols=201 Identities=33% Similarity=0.540 Sum_probs=176.0
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCccCcc-cHHHHhccCCC-C-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE-S-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~-~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |++||+.++.. . .+++++.++++..++.++....| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 12446777888888877665544 4799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
++++|++|||||||++||+++...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999966 9999999999999865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=364.53 Aligned_cols=208 Identities=28% Similarity=0.436 Sum_probs=178.4
Q ss_pred cEEEEEEEEECCCCCC-CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---h
Q 000689 1082 EVELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---L 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---l 1157 (1350)
.|+++||+++|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974321 25999999999999999999999999999999999999999999999999998877653 2
Q ss_pred -hcccEEEccCCccCcc-cHHHHhccCC--CCC----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1158 -RRHMAIVPQEPCLFAS-TIYENIAYGH--ESA----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1158 -R~~i~~VpQdp~LF~g-TIreNL~~~~--~~~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
+++++|+||+|.+|.. |++||+.++. ... ..+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999998875 9999997531 111 1335666677777766554433 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCeEEEe
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEL 1300 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~~GrIvE~ 1300 (1350)
++|||||+++|++|||||||++||+.+...+.+.|++.. .|+|||+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999864 37899999999999988999999999999874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=362.11 Aligned_cols=205 Identities=40% Similarity=0.655 Sum_probs=173.5
Q ss_pred EEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEE
Q 000689 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508 (1350)
Q Consensus 429 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 508 (1350)
+++|++++|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999988777788889999
Q ss_pred EccCCC--cccccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 509 VSQEPA--LFATTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 509 v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
++|++. ++..|++||+.++... .+..+..+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 5678999999875321 12222111 122334444 565566677889999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGS 641 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 641 (1350)
|++|||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=363.58 Aligned_cols=209 Identities=34% Similarity=0.563 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|+.. + .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999632 2 39999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccCCccCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGH-ES-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~-~~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |++||+.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998642 11 12445778888888877766654 4699999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++++|++|||||||++||+++.+.+.+.|++..+ |+|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 8899999999999865 999999999999999999999854
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=378.76 Aligned_cols=212 Identities=22% Similarity=0.424 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999976 4467889999
Q ss_pred EEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||+|.+|.+ |++|||.+... ... .+++.++++..++. ........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999975321 112 22344444444443 33444556899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|+++|++|||||||++||+.+.+.+++.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999999876 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=368.22 Aligned_cols=221 Identities=32% Similarity=0.517 Sum_probs=182.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~i~g~~~~~--~~~ 499 (1350)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 5899999999963 36999999999999999999999999999999999999874 8999999999864 344
Q ss_pred HHHhccEEEEccCCCcccc-cHHHHhhcCCCC--C-CHHHHHHHHHHhchHHHHhcC--CCCccchhcCCCCCCChHHHH
Q 000689 500 RWLRQQIGLVSQEPALFAT-TIKENILLGRPD--A-DLNEIEEAARVANAYSFIIKL--PDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGqkq 573 (1350)
..+|+.++|++|++.+|.. |+.||+.++... . ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5678899999999999875 999999875321 1 2222222211 111111 111222334567789999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999986 9999999999999999999998
Q ss_pred hcc
Q 000689 653 AKG 655 (1350)
Q Consensus 653 ~~~ 655 (1350)
..+
T Consensus 236 ~~~ 238 (252)
T PRK14272 236 TNP 238 (252)
T ss_pred hCc
Confidence 653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.26 Aligned_cols=212 Identities=33% Similarity=0.514 Sum_probs=173.6
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH---HHhh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL---KSLR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l---~~lR 1158 (1350)
|+++||+++|+.+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cccEEEccCC--ccC-cccHHHHhccCC----CCCCHHHHHHHHHHhccHHHHhcCCCCcc-ccccCCCCCCChhHHHHH
Q 000689 1159 RHMAIVPQEP--CLF-ASTIYENIAYGH----ESATESEIIEAARLANADKFISSLPDGYK-TFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1159 ~~i~~VpQdp--~LF-~gTIreNL~~~~----~~~td~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQrl 1230 (1350)
++++|+||+| .++ ..|+++|+.++. ....+++...++ ++++..+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 579999997531 111111111110 1222222 332 234455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhh-hcCEEEEEeCCeEEEec
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~G 1301 (1350)
+|||||+.+|+||||||||++||+.+.+.+.+.|++..+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998753 899999999999997 49999999999999875
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.61 Aligned_cols=232 Identities=26% Similarity=0.448 Sum_probs=187.2
Q ss_pred eEEEEEEEEECCCC------CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH
Q 000689 427 LIELKHVDFSYPSR------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~ 500 (1350)
+|+++||+++|+.. .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 124699999999999999999999999999999999999999999999999998765556
Q ss_pred HHhccEEEEccCCC--cccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChHHHH
Q 000689 501 WLRQQIGLVSQEPA--LFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~--lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGqkq 573 (1350)
..++.++||+|++. +++. |+.+|+.++.. .....+..+ .+.+.+..+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 66778999999985 4443 89999875321 111111111 112233333 442 2234456789999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|++|||||+.+|+||||||||++||+++.+.+.+.|.++. .|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999875 38999999999999986 99999999999999999999
Q ss_pred HHhccCCcHHHHHHH
Q 000689 651 LIAKGENGVYAKLIR 665 (1350)
Q Consensus 651 l~~~~~~~~y~~l~~ 665 (1350)
+...+....+++++.
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 237 VLASPLHELTKRLIA 251 (267)
T ss_pred HhcCCCCHHHHHHHH
Confidence 987644455666654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=377.69 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=187.5
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.++++|++++|++ ..+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 3789999999963 469999999999999999999999999999999999999999999999999876 345678899
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
||+||++.+|.. |+.||+.+.... ...++..+ .+.+.+..+ |++........+||||||||++|||||+.
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIH 150 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999999999876 999999864211 11122211 123444454 67777778888999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 151 ~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 151 DPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999998778999999999999876 999999999999999999998654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=368.18 Aligned_cols=218 Identities=28% Similarity=0.538 Sum_probs=183.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~--~~ 499 (1350)
+|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999963 3699999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC---CCHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD---ADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+++.++|++|++.+|..|++||+.++... ...++ +.++.+..++.+ ..++..+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD-------EVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------hhHHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875321 11111 222233222221 112345677889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=369.52 Aligned_cols=221 Identities=30% Similarity=0.489 Sum_probs=186.9
Q ss_pred CcceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCC---
Q 000689 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIK--- 495 (1350)
Q Consensus 424 ~~g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~--- 495 (1350)
..+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3567999999999973 3599999999999999999999999999999999999875 7999999998774
Q ss_pred -CCCHHHHhccEEEEccCCCcccccHHHHhhcCCC--CCC-----HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCC
Q 000689 496 -SLKLRWLRQQIGLVSQEPALFATTIKENILLGRP--DAD-----LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567 (1350)
Q Consensus 496 -~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~-----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~L 567 (1350)
..+...+++.++|++|++.+|.+|++||+.++.. ... .+++.++++.+++. +++.+..++...+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW-------DEVKDRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCc-------hhhhHHHhCCcccC
Confidence 2344567889999999999998999999987631 111 12233333333322 23345567778899
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988778999999999999965 9999999999999999
Q ss_pred ChHHHHhc
Q 000689 647 THDELIAK 654 (1350)
Q Consensus 647 ~~~~l~~~ 654 (1350)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99998765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=382.18 Aligned_cols=213 Identities=26% Similarity=0.435 Sum_probs=182.1
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 36999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccCCccC-cccHHHHhccCCC--CCCHHHH----HHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLF-ASTIYENIAYGHE--SATESEI----IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF-~gTIreNL~~~~~--~~td~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
+|+||++.+| ..|++||+.+... ..+..+. .++++..+ |++..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999886 5699999975321 1222222 22333333 344445555 469999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||+.+|++|||||||++||+.+.+.+++.|+++. .|+|||++||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 48999999999999976 999999999999999999999754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=383.69 Aligned_cols=213 Identities=31% Similarity=0.507 Sum_probs=181.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC----CHHHH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL----KLRWL 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~----~~~~~ 502 (1350)
+|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....
T Consensus 1 ~l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 1 MLEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred CeEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchh
Confidence 3677 99999963 2 23 89999999999999999999999999999999999999999999998653 23456
Q ss_pred hccEEEEccCCCccc-ccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 503 RQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+++++||+|++.+|+ .|++|||.++......+++.+. +..+ |++........+||||||||++|||||
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKI---------VALL--GIEPLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHH---------HHHc--CCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 789999999999996 4999999987543222333333 3333 555566677789999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhccC
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 999999999999999999999999999998753 7999999999998865 99999999999999999999987743
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=369.32 Aligned_cols=219 Identities=29% Similarity=0.484 Sum_probs=184.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~--~~ 498 (1350)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 3599999999999999999999999999999999999985 48999999999854 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC---CCH----HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD---ADL----NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...++++++||+|++.+|+.|++||+.++... ... +.+.++++..++.+++ .......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56778899999999999999999999875321 111 1223334433333222 233456778999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-----CCEEEEe
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ-----QGSVSEI 645 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~-----~G~i~~~ 645 (1350)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998778999999999999876 99999998 5999999
Q ss_pred cChHHHHhc
Q 000689 646 GTHDELIAK 654 (1350)
Q Consensus 646 g~~~~l~~~ 654 (1350)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=369.66 Aligned_cols=223 Identities=30% Similarity=0.483 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC--C---CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE--P---SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999964 369999999999999999999999999999999999975 4 59999999999864 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCC--CC-C----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHE--SA-T----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~--~~-t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
..+|++++|+||+|.+|..|+++|+.++.. .. . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 23445555666554322 2223445568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999998
Q ss_pred hhcCCCchh
Q 000689 1307 LKNNPDGCY 1315 (1350)
Q Consensus 1307 l~~~~~g~y 1315 (1350)
... +...+
T Consensus 235 ~~~-~~~~~ 242 (252)
T PRK14255 235 FLN-PKEKE 242 (252)
T ss_pred hcC-CCChH
Confidence 765 34433
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=363.11 Aligned_cols=210 Identities=26% Similarity=0.478 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||++.|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCccCcccHHHHhccCC---CC-CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1162 AIVPQEPCLFASTIYENIAYGH---ES-ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1162 ~~VpQdp~LF~gTIreNL~~~~---~~-~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
+|+||+|.+|..|++||+.++. .. ..++++.+.++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997631 11 12233444454444421 2334556789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEe-CCeEEEecChh
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVID-DGKVAELGSHS 1304 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~~DrI~Vl~-~GrIvE~Gt~~ 1304 (1350)
++|++|||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 3889999999999998899999995 67777889885
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.30 Aligned_cols=210 Identities=30% Similarity=0.459 Sum_probs=185.1
Q ss_pred EEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH----HHHhc
Q 000689 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL----RWLRQ 504 (1350)
Q Consensus 429 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~----~~~r~ 504 (1350)
.+.|+.|+|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998866542 24567
Q ss_pred cEEEEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 505 QIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998899999998754 344555677777788888888999999999999999999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 000689 585 PAILLLDEATSALDSESEKLVQE--ALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGS 641 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 641 (1350)
|++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455543 4799999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=361.45 Aligned_cols=206 Identities=35% Similarity=0.559 Sum_probs=170.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~r 503 (1350)
+|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .++
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3789999999952 23699999999999999999999999999999999999999999999999999876543 467
Q ss_pred ccEEEEccCCCccc-ccHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 504 QQIGLVSQEPALFA-TTIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+.++|++|++.+|. .|++||+.++... ...++..+ .+.+.+..+ |+.........+||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 5999999875211 11111111 112233333 44434455567899999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGS 641 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 641 (1350)
|+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999875 48999999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=361.56 Aligned_cols=206 Identities=32% Similarity=0.524 Sum_probs=172.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH---HHHhc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL---RWLRQ 504 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~---~~~r~ 504 (1350)
|+++|++++|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999977654 34678
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
.++||+|++.+|.. |++||+.++.. ..+.++..+. +.+.+..+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR-----VPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999875 99999987632 1122221111 12233333 555555566779999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 642 (1350)
+.+|+++||||||++||+++.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 58999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=371.37 Aligned_cols=219 Identities=29% Similarity=0.477 Sum_probs=182.6
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCCC--C
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSL--K 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~~--~ 498 (1350)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 46999999999963 359999999999999999999999999999999999864 4999999999988643 3
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|++++||+|++.+|..|++|||.++... . +.+ .+.++++..++. +++.......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW-------DEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCc-------cchhhHhhCChhhCCHHH
Confidence 34578899999999999988999999986321 1 111 122222222211 112234466778999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|||++|||||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
+..+
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9765
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=380.26 Aligned_cols=229 Identities=19% Similarity=0.306 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC----CCccEEEECCccCCCCCHHH
Q 000689 1082 EVELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE----PSSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~iDG~di~~~~l~~ 1156 (1350)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996432 2469999999999999999999999999999999999986 58999999999999888766
Q ss_pred hh----cccEEEccCCcc--C-cccHHHHhccC---C---C----C--CCHHHHHHHHHHhccHHHHhcCCCCccccccC
Q 000689 1157 LR----RHMAIVPQEPCL--F-ASTIYENIAYG---H---E----S--ATESEIIEAARLANADKFISSLPDGYKTFVGE 1217 (1350)
Q Consensus 1157 lR----~~i~~VpQdp~L--F-~gTIreNL~~~---~---~----~--~td~ei~~al~~a~l~~~I~~lp~Gldt~vge 1217 (1350)
++ ++|+||||+|.. + ..||.+|+... . . + ...+++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 479999999963 3 35899988531 0 0 0 01235666777777753211 1223
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeC
Q 000689 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDD 1294 (1350)
Q Consensus 1218 ~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~ 1294 (1350)
...+||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ |.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3467999999999999999999999999999999999999999999998753 8999999999999966 999999999
Q ss_pred CeEEEecChhHHhhcCCCchhHHHH
Q 000689 1295 GKVAELGSHSHLLKNNPDGCYARMI 1319 (1350)
Q Consensus 1295 GrIvE~Gt~~eLl~~~~~g~y~~l~ 1319 (1350)
|+|+|.|+++++++. +...|.+.+
T Consensus 235 G~ive~g~~~~i~~~-p~~~y~~~l 258 (330)
T PRK15093 235 GQTVETAPSKELVTT-PHHPYTQAL 258 (330)
T ss_pred CEEEEECCHHHHHhC-CCCHHHHHH
Confidence 999999999999876 566776643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=361.64 Aligned_cols=204 Identities=27% Similarity=0.464 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH---hhc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LRR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~---lR~ 1159 (1350)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998776543 688
Q ss_pred ccEEEccCCcc-CcccHHHHhccCC--CCCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1160 HMAIVPQEPCL-FASTIYENIAYGH--ESATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1160 ~i~~VpQdp~L-F~gTIreNL~~~~--~~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
.++|+||+|.+ +..|++||+.++. ...+++ ++.++++..++.++..+ ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 99999999986 4679999998752 122333 34455666666554433 346799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEE
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE 1299 (1350)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 89999999999853
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=369.32 Aligned_cols=218 Identities=27% Similarity=0.402 Sum_probs=185.1
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhcc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~ 505 (1350)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36999999999973 359999999999999999999999999999999999999999999999999988887788889
Q ss_pred EEEEccCCCccc-ccHHHHhhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 506 IGLVSQEPALFA-TTIKENILLGRPDA------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 506 i~~v~Q~~~lf~-~ti~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
++||+|++.+|. .|++||+.++.... ..+.. ...+.+.+..+ |++......+.+||||||||++||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHH
Confidence 999999998875 59999998763111 00110 01112233333 555556677889999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHh
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
||++.+|++|||||||++||+.+.+.+.+.|.++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999999998753 7899999999998865 99999999999999999988764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=347.26 Aligned_cols=172 Identities=42% Similarity=0.760 Sum_probs=162.6
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+.. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+++...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999743 246999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCccCcccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCE
Q 000689 1163 IVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~I 1242 (1350)
|++|+|.+|.+|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCeE
Q 000689 1243 MLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRNAHVIAVIDDGKV 1297 (1350)
Q Consensus 1243 LlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~~DrI~Vl~~GrI 1297 (1350)
|||||||++||+.+.+.+.+.|++.. +|+|+|+++|+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=367.41 Aligned_cols=219 Identities=26% Similarity=0.425 Sum_probs=184.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCee-----CCCCCHHH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHD-----IKSLKLRW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~-----~~~~~~~~ 501 (1350)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 6999999999974 359999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----HhccEEEEccCCC--ccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCcc-chhcCCCCCCChH
Q 000689 502 ----LRQQIGLVSQEPA--LFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFD-TQVRERGVQLSGG 570 (1350)
Q Consensus 502 ----~r~~i~~v~Q~~~--lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG 570 (1350)
+++.++||+|++. ++. .|+.+||.+... .....+..+ .+.+++..+ |++ +..++.+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 343 488999865311 111122211 234566666 454 4677888999999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 8899999999999975 99999999999999999
Q ss_pred hHHHHhcc
Q 000689 648 HDELIAKG 655 (1350)
Q Consensus 648 ~~~l~~~~ 655 (1350)
++++..++
T Consensus 236 ~~~~~~~~ 243 (258)
T PRK11701 236 TDQVLDDP 243 (258)
T ss_pred HHHHhcCC
Confidence 99997653
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=379.13 Aligned_cols=228 Identities=25% Similarity=0.398 Sum_probs=184.5
Q ss_pred eEEEEEEEEECCCC-CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEECCeeCCCCCHHH
Q 000689 427 LIELKHVDFSYPSR-PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD----PTSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~i~g~~~~~~~~~~ 501 (1350)
.|+++|++++|+.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999632 12469999999999999999999999999999999999986 58999999999998887655
Q ss_pred H----hccEEEEccCCC--ccc-ccHHHHhhcCCC---CC-----CHHHHHHHHHHhchHHHHhcCCCCcc---chhcCC
Q 000689 502 L----RQQIGLVSQEPA--LFA-TTIKENILLGRP---DA-----DLNEIEEAARVANAYSFIIKLPDGFD---TQVRER 563 (1350)
Q Consensus 502 ~----r~~i~~v~Q~~~--lf~-~ti~eNi~~g~~---~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~~ 563 (1350)
+ ++.|+||+|+|. ++. .||.+|+..... .. ..++. ...+.+.+..+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 4 347999999996 333 489999864211 00 00111 11223344444 443 234677
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCC
Q 000689 564 GVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQG 640 (1350)
Q Consensus 564 g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G 640 (1350)
+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998853 8999999999999976 9999999999
Q ss_pred EEEEecChHHHHhccCCcHHHH
Q 000689 641 SVSEIGTHDELIAKGENGVYAK 662 (1350)
Q Consensus 641 ~i~~~g~~~~l~~~~~~~~y~~ 662 (1350)
+|++.|+.+++..++ ...|.+
T Consensus 236 ~ive~g~~~~i~~~p-~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTP-HHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCC-CCHHHH
Confidence 999999999998764 334543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=369.60 Aligned_cols=218 Identities=32% Similarity=0.498 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC-----CccEEEECCccCCC--CCH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP-----SSGRVMIDGKDIRK--YNL 1154 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~iDG~di~~--~~l 1154 (1350)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999964 3699999999999999999999999999999999999863 69999999999864 345
Q ss_pred HHhhcccEEEccCCccCcccHHHHhccCCCC-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHH
Q 000689 1155 KSLRRHMAIVPQEPCLFASTIYENIAYGHES-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQr 1229 (1350)
..+|++|+|+||++.+|..|+++||.++... ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999989999999875311 123445666777776554432 2334556899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCeEEE
Q 000689 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVID---------DGKVAE 1299 (1350)
Q Consensus 1230 laiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI~Vl~---------~GrIvE 1299 (1350)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778999999999999865 99999997 899999
Q ss_pred ecChhHHhhc
Q 000689 1300 LGSHSHLLKN 1309 (1350)
Q Consensus 1300 ~Gt~~eLl~~ 1309 (1350)
.|+++++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999865
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=360.82 Aligned_cols=209 Identities=32% Similarity=0.532 Sum_probs=174.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHH---HHh
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR---WLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~---~~r 503 (1350)
+|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHH
Confidence 3789999999952 23699999999999999999999999999999999999999999999999999876543 367
Q ss_pred ccEEEEccCCCcc-cccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 504 QQIGLVSQEPALF-ATTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf-~~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
+.++|++|++.++ ..|++||+.++.. ..+.++..+.+ .+.+..+ |+.........+||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHH
Confidence 8999999999875 5699999988531 12222222211 1223333 44445566778999999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 644 (1350)
++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999874 47999999999999976 99999999999863
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=366.29 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCcc-----CCCCCHHH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD-----IRKYNLKS 1156 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~d-----i~~~~l~~ 1156 (1350)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999999 87776554
Q ss_pred ----hhcccEEEccCCc--cC-cccHHHHhccCC---CCCCHHHHHHHHHHhccHHHHhcCCCCcc-ccccCCCCCCChh
Q 000689 1157 ----LRRHMAIVPQEPC--LF-ASTIYENIAYGH---ESATESEIIEAARLANADKFISSLPDGYK-TFVGERGVQLSGG 1225 (1350)
Q Consensus 1157 ----lR~~i~~VpQdp~--LF-~gTIreNL~~~~---~~~td~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgG 1225 (1350)
+|+.++||||+|. ++ ..|+.+|+.+.. ......++.+ .++++++.+ |++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 348888886421 1111122211 134555554 333 3456677889999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecC
Q 000689 1226 QKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1226 QrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt 1302 (1350)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ |.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 7899999999999975 99999999999999999
Q ss_pred hhHHhhcCCCchhHHH
Q 000689 1303 HSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1303 ~~eLl~~~~~g~y~~l 1318 (1350)
++++... +...|.+.
T Consensus 236 ~~~~~~~-~~~~~~~~ 250 (258)
T PRK11701 236 TDQVLDD-PQHPYTQL 250 (258)
T ss_pred HHHHhcC-CCCHHHHH
Confidence 9999865 34445544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=361.76 Aligned_cols=212 Identities=31% Similarity=0.457 Sum_probs=176.3
Q ss_pred eEEEEEEEEECCCCCC-CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH---H
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~---~ 502 (1350)
.|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 6999999999974211 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hccEEEEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHH
Q 000689 503 -RQQIGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 503 -r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iA 578 (1350)
++.++|++|++.+|.. |++||+.++.. .....+.. ..+.+.+..+ |++........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3679999999998875 99999986421 11111111 1123334444 555555566779999999999999
Q ss_pred HHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEccCchhhhhcCEEEEEeCCEEEEe
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645 (1350)
Q Consensus 579 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~vl~~G~i~~~ 645 (1350)
|||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 3 7899999999999888999999999999864
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=362.95 Aligned_cols=210 Identities=32% Similarity=0.596 Sum_probs=183.8
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|+. ++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 37999999999999999999999999999999999999999999999999987654 368999
Q ss_pred EEccCCccCc-ccHHHHhccCCCC--C----CHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHES--A----TESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~~--~----td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+|. .|++||+.++... . .++++.++++..++.+++.+. ..+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999885 7999999864321 1 233456677777776665443 35799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++++|++|+|||||++||+.+.+.+.+.|++... |+|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998653 8999999999999876 999999999999999999999865
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=359.80 Aligned_cols=201 Identities=23% Similarity=0.482 Sum_probs=171.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 369999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..++.+ .......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976421 111 223344444444433 3334456799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEec
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~G 1301 (1350)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999864 57899999999999865 9999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=367.54 Aligned_cols=218 Identities=30% Similarity=0.534 Sum_probs=181.7
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~--~~~ 499 (1350)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999974 3599999999999999999999999999999999999974 79999999999853 345
Q ss_pred HHHhccEEEEccCCCccc-ccHHHHhhcCCCC---CCHHH----HHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 500 RWLRQQIGLVSQEPALFA-TTIKENILLGRPD---ADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~---~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
..+|+.++|++|++.+|. .|++||+.++... .+.++ +.++++..++.+ +........+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 567889999999999987 4999999875321 11111 122222222211 12345567778999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe------CCEEEE
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ------QGSVSE 644 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~------~G~i~~ 644 (1350)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988778999999999999865 99999997 899999
Q ss_pred ecChHHHHhc
Q 000689 645 IGTHDELIAK 654 (1350)
Q Consensus 645 ~g~~~~l~~~ 654 (1350)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=345.78 Aligned_cols=172 Identities=45% Similarity=0.730 Sum_probs=161.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCE
Q 000689 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587 (1350)
Q Consensus 508 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 587 (1350)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred eEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 000689 588 LLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVLQQGSV 642 (1350)
Q Consensus 588 lilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i 642 (1350)
|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48999999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=368.78 Aligned_cols=221 Identities=28% Similarity=0.415 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999998888878888999
Q ss_pred EEccCCCc-ccccHHHHhhcCCCCCCH-HHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCC
Q 000689 508 LVSQEPAL-FATTIKENILLGRPDADL-NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 508 ~v~Q~~~l-f~~ti~eNi~~g~~~~~~-~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 585 (1350)
|++|++.+ +..|++||+.++...... ...........+.+.+..+ |+.......+.+||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999864 467999999886421100 0000000011223444444 5555566778899999999999999999999
Q ss_pred CEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEEEecChHHHHh
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIR-KADVVAVLQQGSVSEIGTHDELIA 653 (1350)
Q Consensus 586 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~~l~~ 653 (1350)
+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999875 4799999999999996 499999999999999999888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=374.97 Aligned_cols=219 Identities=28% Similarity=0.499 Sum_probs=188.0
Q ss_pred CcEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC-----CCccEEEECCccCCC--CC
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE-----PSSGRVMIDGKDIRK--YN 1153 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~--~~ 1153 (1350)
..|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999964 369999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHhhcccEEEccCCccCcccHHHHhccCCCC-------------------CCHHHHHHHHHHhccHHHHhcCCCCcccc
Q 000689 1154 LKSLRRHMAIVPQEPCLFASTIYENIAYGHES-------------------ATESEIIEAARLANADKFISSLPDGYKTF 1214 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~-------------------~td~ei~~al~~a~l~~~I~~lp~Gldt~ 1214 (1350)
...+|++++||||++.+|++|++||+.++... ..++++.++++..++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 66788999999999999999999999865210 01233555555555433 33445
Q ss_pred ccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE-EEE
Q 000689 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRN-AHVI-AVI 1292 (1350)
Q Consensus 1215 vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~~-~DrI-~Vl 1292 (1350)
+...+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56677889999999999999999999999999999999999999999999998777899999999999865 9997 567
Q ss_pred eCCeEEEecChhHHhhc
Q 000689 1293 DDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1293 ~~GrIvE~Gt~~eLl~~ 1309 (1350)
++|++++.|+++++++.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=366.07 Aligned_cols=227 Identities=26% Similarity=0.467 Sum_probs=189.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEEC------CccCCCCCHH
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID------GKDIRKYNLK 1155 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iD------G~di~~~~l~ 1155 (1350)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.++..++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999964 369999999999999999999999999999999999999998666555 5777777778
Q ss_pred HhhcccEEEccCCccCcc-cHHHHhccCCC--CC-CHHH----HHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHH
Q 000689 1156 SLRRHMAIVPQEPCLFAS-TIYENIAYGHE--SA-TESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1156 ~lR~~i~~VpQdp~LF~g-TIreNL~~~~~--~~-td~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1227 (1350)
.+|+.++|+||+|.+|.+ |+++|+.++.. .. .+++ +.++++..++++++. ......+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999875 99999986521 11 2222 345555556543321 123345667999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh-hcCEEEEEeCCeEEEecChhHH
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIR-NAHVIAVIDDGKVAELGSHSHL 1306 (1350)
Q Consensus 1228 QrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~g~TvI~IaHRlsti~-~~DrI~Vl~~GrIvE~Gt~~eL 1306 (1350)
||++||||++++|++|||||||++||..+++.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999995 5999999999999999999999
Q ss_pred hhcCCCchhHHHH
Q 000689 1307 LKNNPDGCYARMI 1319 (1350)
Q Consensus 1307 l~~~~~g~y~~l~ 1319 (1350)
.+. +...|.+.+
T Consensus 240 ~~~-~~~~~~~~~ 251 (257)
T PRK14246 240 FTS-PKNELTEKY 251 (257)
T ss_pred HhC-CCcHHHHHH
Confidence 876 455565443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=382.34 Aligned_cols=210 Identities=27% Similarity=0.445 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCC----CHHHhh
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKY----NLKSLR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~----~l~~lR 1158 (1350)
|++ |++++|.+. .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999532 23 99999999999999999999999999999999999999999999998653 245568
Q ss_pred cccEEEccCCccCc-ccHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1159 RHMAIVPQEPCLFA-STIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~-gTIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
++++||||++.+|. .|++||+.++.....++++.+.++..++.++.... ..+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHH
Confidence 89999999999996 59999999875444556677778887776655443 3579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
++|++|||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998753 7899999999998866 999999999999999999999976
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=360.72 Aligned_cols=201 Identities=33% Similarity=0.553 Sum_probs=171.0
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCC--CCHHHhhcc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK--YNLKSLRRH 1160 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~--~~l~~lR~~ 1160 (1350)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 369999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEccCCccCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHH
Q 000689 1161 MAIVPQEPCLFA-STIYENIAYGHE---SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAI 1232 (1350)
Q Consensus 1161 i~~VpQdp~LF~-gTIreNL~~~~~---~~td~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlai 1232 (1350)
++|+||+|.+|. .|++||+.++.. ..+.+ ++.++++..++.+. +.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHH
Confidence 999999999886 699999986521 22222 23444444444433 334446799999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeE
Q 000689 1233 ARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297 (1350)
Q Consensus 1233 ARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrI 1297 (1350)
|||++++|++|||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 48999999999999965 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=366.63 Aligned_cols=219 Identities=32% Similarity=0.500 Sum_probs=184.7
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~--~~ 498 (1350)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 37999999999973 3599999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCCC-----CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDA-----DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
...+|+.|+|++|++.+|+.|+.||+.++.... ..+.+.++++.+++.+.+ .......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHH
Confidence 456788999999999999889999998863211 112223333333333222 23455677899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CCEEE
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ---------QGSVS 643 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~i~ 643 (1350)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998778999999999999865 99999997 89999
Q ss_pred EecChHHHHhc
Q 000689 644 EIGTHDELIAK 654 (1350)
Q Consensus 644 ~~g~~~~l~~~ 654 (1350)
+.|+.+++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=361.11 Aligned_cols=202 Identities=30% Similarity=0.493 Sum_probs=167.3
Q ss_pred EEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEE
Q 000689 429 ELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGL 508 (1350)
Q Consensus 429 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 508 (1350)
+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 35999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCCc---ccccHHHHhhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 509 VSQEPAL---FATTIKENILLGRPDA------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 509 v~Q~~~l---f~~ti~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|+|++.+ ++.|++||+.++.... ..++..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA-----KVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHH-----HHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999876 5679999998864311 0011111 122333333 4554555667899999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999875 68999999999999875 9999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=368.42 Aligned_cols=222 Identities=26% Similarity=0.391 Sum_probs=185.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CcEEEECCeeCCCCC
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT--------SGQVLLDGHDIKSLK 498 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~i~g~~~~~~~ 498 (1350)
+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+
T Consensus 1 ml~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 1 MLTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred CeEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 3789999999963 36999999999999999999999999999999999999998 999999999998887
Q ss_pred HHHHhccEEEEccCCC-cccccHHHHhhcCCCCC-CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHH
Q 000689 499 LRWLRQQIGLVSQEPA-LFATTIKENILLGRPDA-DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~-lf~~ti~eNi~~g~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~ 576 (1350)
...+++.++||+|++. +|..|++||+.++.... .............+.+.+..+ |+++..+....+||||||||++
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHH
Confidence 7778888999999986 56789999998863211 000000000011123344444 7777778888999999999999
Q ss_pred HHHHhc---------CCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000689 577 IARAML---------KNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644 (1350)
Q Consensus 577 iARal~---------~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 644 (1350)
|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|+|++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE
Confidence 999999 59999999999999999999999999998753 7999999999999864 99999999999999
Q ss_pred ecChHHHHh
Q 000689 645 IGTHDELIA 653 (1350)
Q Consensus 645 ~g~~~~l~~ 653 (1350)
.|++++++.
T Consensus 236 ~g~~~~~~~ 244 (272)
T PRK13547 236 HGAPADVLT 244 (272)
T ss_pred ecCHHHHcC
Confidence 999988864
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=367.46 Aligned_cols=212 Identities=28% Similarity=0.430 Sum_probs=183.5
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC--------ccEEEECCccCCCCCH
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS--------SGRVMIDGKDIRKYNL 1154 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~--------~G~I~iDG~di~~~~l 1154 (1350)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 36999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHhhcccEEEccCCc-cCcccHHHHhccCCC-C------CC---HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCC
Q 000689 1155 KSLRRHMAIVPQEPC-LFASTIYENIAYGHE-S------AT---ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLS 1223 (1350)
Q Consensus 1155 ~~lR~~i~~VpQdp~-LF~gTIreNL~~~~~-~------~t---d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1223 (1350)
..+|+.++|+||++. +|..|++||+.++.. . .+ ++.++++++..++. +.++....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 678899999987531 1 11 12344455555443 44445567899
Q ss_pred hhHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEE
Q 000689 1224 GGQKQRVAIARAFV---------RKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAV 1291 (1350)
Q Consensus 1224 gGQrQrlaiARALL---------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~V 1291 (1350)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ |+|+|+|+|+++.+.. ||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998653 7999999999999964 999999
Q ss_pred EeCCeEEEecChhHHhh
Q 000689 1292 IDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1292 l~~GrIvE~Gt~~eLl~ 1308 (1350)
|++|+|++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999874
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=335.35 Aligned_cols=223 Identities=27% Similarity=0.480 Sum_probs=193.5
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHH-Hhc
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW-LRQ 504 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~-~r~ 504 (1350)
+.+..+|+.++|..+ +|++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.||+.++... -|.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 458899999999754 6999999999999999999999999999999999999999999999999999999765 456
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
.|||+||||.+|.+ ||+|||..-..- ...+...+.+...+.+.+..+ .+.+.-...+.+||||||.|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 79999999999987 999999865431 111222233333344555555 77788888999999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hhhhcCEEEEEeCCEEEEecChHHHHhc
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~~~~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|+.++||||++++||.+-..|++.++.++ +|..|++.-|+.. |+.-|||.+++.+|+|..+|+++|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999886 5889999999986 4667999999999999999999999876
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=358.92 Aligned_cols=205 Identities=25% Similarity=0.485 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
++++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EEccCCCcccc-cHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|++|++.++.. |++||+.++.. .....+.. ..+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987531 11111111 1233455555 666667777889999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=359.89 Aligned_cols=205 Identities=37% Similarity=0.583 Sum_probs=174.6
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCC--CCHHHHhcc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKS--LKLRWLRQQ 505 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 505 (1350)
|+++||+++|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 359999999999999999999999999999999999999999999999999853 344567889
Q ss_pred EEEEccCCCccc-ccHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 506 IGLVSQEPALFA-TTIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 506 i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
++|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.+..+ |++........+||||||||++|||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 599999987632 122222111 123444444 666667777889999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSV 642 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 642 (1350)
+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999885 48999999999999975 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=382.13 Aligned_cols=234 Identities=35% Similarity=0.525 Sum_probs=188.3
Q ss_pred ceEEEEEEEEECCCC--------CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCee--CC
Q 000689 426 GLIELKHVDFSYPSR--------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHD--IK 495 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~--------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~--~~ 495 (1350)
..++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 468999999999742 13468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhccEEEEccCCC--cc-cccHHHHhhcCCCCCC-HHHHHHHHHHhchHHHHhcCCCCccc-hhcCCCCCCChH
Q 000689 496 SLKLRWLRQQIGLVSQEPA--LF-ATTIKENILLGRPDAD-LNEIEEAARVANAYSFIIKLPDGFDT-QVRERGVQLSGG 570 (1350)
Q Consensus 496 ~~~~~~~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~~~~-~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgG 570 (1350)
.-+...+|+++-+|+|||. |- ..||.++|.-...... ...-...++.+.+.+.+ |+.. .....+.+||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-----gL~~~~l~ryP~elSGG 433 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV-----GLPPEFLDRYPHELSGG 433 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc-----CCCHHHHhcCchhcCcc
Confidence 2235567889999999996 33 3499999864321100 00111111233333333 4444 577889999999
Q ss_pred HHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 571 QKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 571 qkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
|||||||||||..+|+++|+|||||+||+-+...|.+.|+++.+ |.|.|+||||++.++. ||||+||++|+|+|.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999998863 8999999999999988 99999999999999999
Q ss_pred hHHHHhccCCcHHHHHH
Q 000689 648 HDELIAKGENGVYAKLI 664 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~ 664 (1350)
.+++.+.+.+.+-+.|.
T Consensus 514 ~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 514 TEKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHHhcCCCChHHHHHH
Confidence 99999886444333333
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=362.54 Aligned_cols=214 Identities=23% Similarity=0.400 Sum_probs=170.8
Q ss_pred EEEEEEEEECCCCC-CCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCC---CCccEEEECCccCCCCCHHHhh
Q 000689 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE---PSSGRVMIDGKDIRKYNLKSLR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~iDG~di~~~~l~~lR 1158 (1350)
++|+||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhccHH-HHhcCCCCccccccCCCCCCChhHHHHHHHHHHh
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADK-FISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~~~~td~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARAL 1236 (1350)
++++|+||++.+|.+ |++||+.++...........+.+....++ .+..+ +++.........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421100000000000001111 12211 233233345568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCc-hhh-hhcCEEEEEeCCeEEEec
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRL-STI-RNAHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1237 Lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRl-sti-~~~DrI~Vl~~GrIvE~G 1301 (1350)
+++|+||||||||++||+.+...+.+.|++.. +++|+|++||++ ..+ ..||+|++|++|+++++|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 455 559999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=370.80 Aligned_cols=214 Identities=34% Similarity=0.549 Sum_probs=183.0
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
.++++|++++|+. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999972 24699999999999999999999999999999999999999999999999988665 67788899
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHH
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPDA------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iAR 579 (1350)
|||||+|.+++. |++||+.|..... ..+.+.+.++.. |++.....+..+||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998866 9999998742211 122333333332 3433225567789999999999999
Q ss_pred HhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMI-G-RTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 580 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
||+.+|++|||||||++||+.+...+.+.|+++.+ | +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 999999999999999998887643
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=371.78 Aligned_cols=222 Identities=29% Similarity=0.486 Sum_probs=185.4
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCCC--C
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSL--K 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~~--~ 498 (1350)
..|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 47999999999974 359999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCCC--------------CHHHHHHHHHHhchHHHHh--cCCCCccchhcC
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDA--------------DLNEIEEAARVANAYSFII--KLPDGFDTQVRE 562 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~--------------~~~~~~~~~~~~~~~~~i~--~lp~g~~t~~~~ 562 (1350)
...+|+.++||+|++.+|+.|++||+.++.... ...+. ....+.+.+. .+++++++..+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDA----EDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHH----HHHHHHHHHHHcCCchhhhHHhcC
Confidence 556788999999999999999999999763210 00000 0011112222 233345566778
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE-EEEeCC
Q 000689 563 RGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVV-AVLQQG 640 (1350)
Q Consensus 563 ~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i-~vl~~G 640 (1350)
.+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|++|
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 88999999999999999999999999999999999999999999999998777999999999999865 9997 567999
Q ss_pred EEEEecChHHHHhc
Q 000689 641 SVSEIGTHDELIAK 654 (1350)
Q Consensus 641 ~i~~~g~~~~l~~~ 654 (1350)
++++.|+++++...
T Consensus 277 ~i~~~g~~~~~~~~ 290 (305)
T PRK14264 277 ELVEYDDTDKIFEN 290 (305)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999999998764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=355.35 Aligned_cols=202 Identities=34% Similarity=0.597 Sum_probs=176.8
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
++++||+++|+. +++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .+|++++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEccCCccCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGH-ES-----ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~-~~-----~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
||||+|.+|.+ |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999874 9999997542 11 12345677888888877665554 4799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecC
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt 1302 (1350)
++++|+|+||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999999865 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=364.62 Aligned_cols=225 Identities=25% Similarity=0.412 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCC----CccEEEECCccCCCCCHHHh
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP----SSGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p----~~G~I~iDG~di~~~~l~~l 1157 (1350)
.|+++||+++| . .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEccCCc-cCc--ccHHHHhccC----CCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHH
Q 000689 1158 RRHMAIVPQEPC-LFA--STIYENIAYG----HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1158 R~~i~~VpQdp~-LF~--gTIreNL~~~----~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrl 1230 (1350)
++.++||||+|. .|. .|+.+|+... .....+++++++++..++.++ ++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 4888876431 112334567777777776442 1234455678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHh
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl 1307 (1350)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|+|+++.+.. ||+|++|++|++++.|++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998643 7999999999999865 9999999999999999999998
Q ss_pred hcCCCc-hhHHHHHH
Q 000689 1308 KNNPDG-CYARMIQL 1321 (1350)
Q Consensus 1308 ~~~~~g-~y~~l~~~ 1321 (1350)
+. +.. .++.++..
T Consensus 230 ~~-~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NA-PKHAVTRSLVSA 243 (254)
T ss_pred hC-CCCHHHHHHHHh
Confidence 76 334 34445543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=364.09 Aligned_cols=220 Identities=27% Similarity=0.471 Sum_probs=184.3
Q ss_pred ceEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEECCeeCCC--CC
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT-----SGQVLLDGHDIKS--LK 498 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~i~g~~~~~--~~ 498 (1350)
+.|+++|++|+|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 25999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhccEEEEccCCCcccccHHHHhhcCCCC--C-CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHH
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPD--A-DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 571 (1350)
...+|+.++|++|++.+|..|++||+.++... . +.. .+.++++..++.++ ++...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678899999999999999999999875211 1 111 12223333332222 2234567788999999
Q ss_pred HHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC-----CEEE
Q 000689 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQ-----GSVS 643 (1350)
Q Consensus 572 kqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~-----G~i~ 643 (1350)
|||++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 48999999999999875 999999999 9999
Q ss_pred EecChHHHHhcc
Q 000689 644 EIGTHDELIAKG 655 (1350)
Q Consensus 644 ~~g~~~~l~~~~ 655 (1350)
+.|+++++...+
T Consensus 236 ~~~~~~~~~~~~ 247 (261)
T PRK14258 236 EFGLTKKIFNSP 247 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999999997653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=344.19 Aligned_cols=221 Identities=32% Similarity=0.504 Sum_probs=191.6
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHH-hcc
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL-RQQ 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 505 (1350)
.+++++++++|++ ..+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||..+++..+ |..
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4789999999974 369999999999999999999999999999999999999999999999999999997764 567
Q ss_pred EEEEccCCCcccc-cHHHHhhcCCCCC-----------CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHH
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDA-----------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~-----------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
|+--||.+.+|++ ||.||+..+.... ...+..++.+ .+.+.++.+ |++...++...+||+|||.
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 9999999999976 9999999873211 0011122222 223444444 8888888889999999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+++|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999999999999999874 5999999999999976 99999999999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
..++
T Consensus 237 V~~d 240 (250)
T COG0411 237 VRNN 240 (250)
T ss_pred HhcC
Confidence 9876
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=376.54 Aligned_cols=200 Identities=24% Similarity=0.448 Sum_probs=173.1
Q ss_pred CCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccEEEccCCccCcc-cHH
Q 000689 1098 IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIY 1176 (1350)
Q Consensus 1098 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~~VpQdp~LF~g-TIr 1176 (1350)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999876 345678899999999999875 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCC
Q 000689 1177 ENIAYGHE--SAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250 (1350)
Q Consensus 1177 eNL~~~~~--~~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~p~ILlLDEaTS 1250 (1350)
|||.+... ..+ ++++.++++..++.+.. .....+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986421 122 22355556666554332 23345799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1251 ALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1251 aLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
+||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 58999999999999976 999999999999999999999765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=364.92 Aligned_cols=212 Identities=21% Similarity=0.358 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhcc--CCCCccEEEECCccCCCCCHHHh-hc
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF--YEPSSGRVMIDGKDIRKYNLKSL-RR 1159 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~iDG~di~~~~l~~l-R~ 1159 (1350)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 3699999999999999999999999999999999999 47999999999999988877654 45
Q ss_pred ccEEEccCCccCcc-cHHHHhccCCCC---------CC----HHHHHHHHHHhccHHHHhcCCCCccccccCCCC-CCCh
Q 000689 1160 HMAIVPQEPCLFAS-TIYENIAYGHES---------AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGV-QLSG 1224 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~g-TIreNL~~~~~~---------~t----d~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~-~LSg 1224 (1350)
.++||||+|.+|.+ |++||+.+.... .+ ++.+.++++..++.+. ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCH
Confidence 69999999998876 899998653110 11 1223344444443211 1122222 4999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCeEEEec
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN--AHVIAVIDDGKVAELG 1301 (1350)
Q Consensus 1225 GQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~~--~DrI~Vl~~GrIvE~G 1301 (1350)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47999999999999976 7999999999999999
Q ss_pred ChhHHh
Q 000689 1302 SHSHLL 1307 (1350)
Q Consensus 1302 t~~eLl 1307 (1350)
+++++-
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=354.34 Aligned_cols=201 Identities=33% Similarity=0.531 Sum_probs=169.8
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEccCCCcccc-cHHHHhhcCCC-CCC-----HHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 000689 508 LVSQEPALFAT-TIKENILLGRP-DAD-----LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~-~~~-----~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARa 580 (1350)
|++|++.+|.. |++||+.++.. ... .+++.++++.. |++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV-----------GLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999975 99999987642 111 11223333333 44444555667899999999999999
Q ss_pred hcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEec
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 581 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
++.+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999976 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=360.04 Aligned_cols=215 Identities=33% Similarity=0.526 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
|+||++.+|++ |++||+.++... .+..+.. ..+.+.+..+ |+.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999876431 1111111 1223445554 444445566779999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+++||||||++||+++++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998754 7999999999999866 999999999999999999998754
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=362.43 Aligned_cols=218 Identities=29% Similarity=0.524 Sum_probs=184.9
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-----PTSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~i~g~~~~~~--~~ 499 (1350)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4889999999963 359999999999999999999999999999999999864 4899999999998653 45
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCC---CCHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPD---ADLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+|++++|+||++.+|+.|++||+.++... .+.+ ++.++++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 5678899999999999999999999876321 1112 2333444444433332 234567789999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999998
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 755
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=363.79 Aligned_cols=218 Identities=31% Similarity=0.506 Sum_probs=182.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEECCeeCCC--CCH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD--P---TSGQVLLDGHDIKS--LKL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~i~g~~~~~--~~~ 499 (1350)
+|+++||+++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 6899999999973 369999999999999999999999999999999999975 5 59999999998864 334
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCC--CC-CHH----HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRP--DA-DLN----EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~~----~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
..+++.++|++|++.+|+.|++||+.++.. .. ..+ ++.++++.+++. +++.......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 567789999999999998999999987521 11 111 112222222221 1233445667789999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l 651 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 999999999999999999888
Q ss_pred Hhc
Q 000689 652 IAK 654 (1350)
Q Consensus 652 ~~~ 654 (1350)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 765
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=365.50 Aligned_cols=220 Identities=26% Similarity=0.427 Sum_probs=182.1
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEECCeeCCCC-----C
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT---SGQVLLDGHDIKSL-----K 498 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~i~g~~~~~~-----~ 498 (1350)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 6899999999963 36999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhccEEEEccCCCcccc-cHHHHhhcCCCCCCH--H---HHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHH
Q 000689 499 LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADL--N---EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQK 572 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~--~---~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqk 572 (1350)
...++++++|+||++.+|.. |++||+.++...... . ..........+.+.+..+ |++......+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567889999999998874 999999886421100 0 000000111223444444 555556777889999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~ 649 (1350)
||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999885 38999999999998754 9999999999999999998
Q ss_pred HH
Q 000689 650 EL 651 (1350)
Q Consensus 650 ~l 651 (1350)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=363.21 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=185.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEECCeeCCCC--CH
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDP-----TSGQVLLDGHDIKSL--KL 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~i~g~~~~~~--~~ 499 (1350)
.+.+++++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 3699999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHHhccEEEEccCCCcccccHHHHhhcCCCCC-----CHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHH
Q 000689 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDA-----DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQR 574 (1350)
Q Consensus 500 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqr 574 (1350)
..+|+.++|++|++.+|..|+.|||.++.... ..+++.++++..++.+.+ ....++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 46778899999999999899999999864211 112344444444433222 223456778999999999
Q ss_pred HHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe--------CCEEEEe
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ--------QGSVSEI 645 (1350)
Q Consensus 575 i~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~vl~--------~G~i~~~ 645 (1350)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999998865 99999996 8999999
Q ss_pred cChHHHHhc
Q 000689 646 GTHDELIAK 654 (1350)
Q Consensus 646 g~~~~l~~~ 654 (1350)
|+++++++.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999865
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=359.27 Aligned_cols=215 Identities=37% Similarity=0.542 Sum_probs=181.5
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEE
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 507 (1350)
|+++|++|+|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999974 369999999999999999999999999999999999999999999999999876654 367899
Q ss_pred EEccCCCcccc-cHHHHhhcCCCC--CCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 508 LVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
||+|++.+|.+ |++||+.++... .+.....+ .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 999999875321 11111111 112233333 555556667789999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|+++||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999998753 8999999999999865 999999999999999999888754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.77 Aligned_cols=204 Identities=25% Similarity=0.451 Sum_probs=174.0
Q ss_pred CccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccEEEEccCCCcccc-cHH
Q 000689 443 VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIK 521 (1350)
Q Consensus 443 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 521 (1350)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++|||||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999875 345678889999999999876 999
Q ss_pred HHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCCCCEeEEeccCCCCCH
Q 000689 522 ENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599 (1350)
Q Consensus 522 eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ililDE~ts~lD~ 599 (1350)
||+.+... ..+..+..+ .+.+.+..+ |+.........+||||||||++|||||+.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987421 112222111 123344444 555556667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 600 ESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 600 ~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999885 58999999999999976 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=365.92 Aligned_cols=222 Identities=24% Similarity=0.400 Sum_probs=185.5
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCC---ccEEEECCccCCCC-----C
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS---SGRVMIDGKDIRKY-----N 1153 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~iDG~di~~~-----~ 1153 (1350)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 36999999999999999999999999999999999999886 49999999998654 3
Q ss_pred HHHhhcccEEEccCCccCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhccHHHHhcCCCCccccccCC
Q 000689 1154 LKSLRRHMAIVPQEPCLFA-STIYENIAYGHES--------------ATESEIIEAARLANADKFISSLPDGYKTFVGER 1218 (1350)
Q Consensus 1154 l~~lR~~i~~VpQdp~LF~-gTIreNL~~~~~~--------------~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~ 1218 (1350)
...+|++++|+||++.+|. .|+++|+.++... ...+++.++++..++.+.+. ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 4567889999999999887 5999999865311 11234555666666554433 34
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCC
Q 000689 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDG 1295 (1350)
Q Consensus 1219 G~~LSgGQrQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~~G 1295 (1350)
..+||||||||++||||++.+|++|||||||++||+++.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46799999999999999999999999999999999999999999999875 38999999999998754 9999999999
Q ss_pred eEEEecChhHHhhcCCCchhHHHHHH
Q 000689 1296 KVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1296 rIvE~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
++++.|+++++- +....+++..
T Consensus 230 ~i~~~g~~~~~~----~~~~~~~~~~ 251 (262)
T PRK09984 230 HVFYDGSSQQFD----NERFDHLYRS 251 (262)
T ss_pred EEEEeCCHHHhc----cHHHHHHHhh
Confidence 999999999962 2345555543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=401.61 Aligned_cols=108 Identities=30% Similarity=0.498 Sum_probs=95.3
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh
Q 000689 1210 GYKT-FVGERGVQLSGGQKQRVAIARAFVRKA---EIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIR 1284 (1350)
Q Consensus 1210 Gldt-~vge~G~~LSgGQrQrlaiARALLr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~g~TvI~IaHRlsti~ 1284 (1350)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. +|.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 367777889999999999999999999 9999999999999999999999999875 5899999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHHhhcCCCchhHHH
Q 000689 1285 NAHVIAVI------DDGKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1285 ~~DrI~Vl------~~GrIvE~Gt~~eLl~~~~~g~y~~l 1318 (1350)
.||+|++| ++|+|++.|+++++.+. +.+.-.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~-~~s~t~~~ 936 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV-EASYTGRY 936 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC-cccHHHHH
Confidence 99999999 79999999999999976 34433333
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=359.44 Aligned_cols=214 Identities=28% Similarity=0.397 Sum_probs=173.3
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEECCeeCCCCCHHHHh
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD---PTSGQVLLDGHDIKSLKLRWLR 503 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~i~g~~~~~~~~~~~r 503 (1350)
++|+||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997532 3579999999999999999999999999999999999999 99999999999875 34578
Q ss_pred ccEEEEccCCCcccc-cHHHHhhcCCCCCCHHHHHHHHHHhchHH-HHhcCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYS-FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~-~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal 581 (1350)
+.++|++|++.+|++ |++||+.++..........+..+.....+ .+..+ ++.....+...+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987532110000001111111112 23332 444455567789999999999999999
Q ss_pred cCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCc-hhh-hhcCEEEEEeCCEEEEec
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRL-STI-RKADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 582 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~-~~~d~i~vl~~G~i~~~g 646 (1350)
+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998874 489999999998 455 459999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=366.37 Aligned_cols=229 Identities=29% Similarity=0.469 Sum_probs=188.9
Q ss_pred EEEEEEEEECCCC------CCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCH--
Q 000689 1083 VELKHVDFSYPSR------PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNL-- 1154 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l-- 1154 (1350)
|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 02479999999999999999999999999999999999999999999999999987765
Q ss_pred -HHhhcccEEEccCCc--cC-cccHHHHhccCCC---CCCHHHHHHHHHHhccHHHHhcCCCCccc-cccCCCCCCChhH
Q 000689 1155 -KSLRRHMAIVPQEPC--LF-ASTIYENIAYGHE---SATESEIIEAARLANADKFISSLPDGYKT-FVGERGVQLSGGQ 1226 (1350)
Q Consensus 1155 -~~lR~~i~~VpQdp~--LF-~gTIreNL~~~~~---~~td~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQ 1226 (1350)
..+|+.++|+||++. ++ ..|+++|+.+... +.+.+ .....+++.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 347889999999983 43 4699999864211 11111 1122334455544 5553 4456677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecCh
Q 000689 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1227 rQrlaiARALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~ 1303 (1350)
|||++|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 8899999999999975 999999999999999999
Q ss_pred hHHhhcCCCchhHHHHH
Q 000689 1304 SHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1304 ~eLl~~~~~g~y~~l~~ 1320 (1350)
+++... ++.|..-+.
T Consensus 237 ~~~~~~--~~~~~~~~~ 251 (268)
T PRK10419 237 GDKLTF--SSPAGRVLQ 251 (268)
T ss_pred hhccCC--CCHHHHHHH
Confidence 999854 666665554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=322.10 Aligned_cols=228 Identities=31% Similarity=0.516 Sum_probs=192.3
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCC---------
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL--------- 497 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~--------- 497 (1350)
.++++|+.++|++. .+|++||++.++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|..|+-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999743 499999999999999999999999999999999999999999999999987421
Q ss_pred ----CHHHHhccEEEEccCCCcccc-cHHHHhhcCCC---CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCCh
Q 000689 498 ----KLRWLRQQIGLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569 (1350)
Q Consensus 498 ----~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 569 (1350)
..+.+|.+.|+|+|+..|++- ||.||+.-+.- ..+..+.. ..+..++.+. |+.......+..|||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~-----e~Ae~~L~kV--Gi~ek~~~YP~~LSG 155 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAI-----ERAEKYLAKV--GIAEKADAYPAHLSG 155 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHH-----HHHHHHHHHh--CchhhhhcCccccCc
Confidence 134688999999999999965 99999864311 11222211 1223444444 887777788999999
Q ss_pred HHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecC
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 570 Gqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
||+||+||||||..+|+++++|||||||||+---.+.+.++++. .|||.++|||.+.+.++ +.+++.|.+|+|-|+|+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCC
Confidence 99999999999999999999999999999999999999998885 69999999999999998 89999999999999999
Q ss_pred hHHHHhccCCcHHHHHH
Q 000689 648 HDELIAKGENGVYAKLI 664 (1350)
Q Consensus 648 ~~~l~~~~~~~~y~~l~ 664 (1350)
++++..++.+...+++.
T Consensus 236 P~qvf~nP~S~RlkqFl 252 (256)
T COG4598 236 PEQVFGNPQSPRLKQFL 252 (256)
T ss_pred hHHHhcCCCCHHHHHHH
Confidence 99999886555444443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=368.97 Aligned_cols=214 Identities=30% Similarity=0.534 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhccc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i 1161 (1350)
.|+++||+.+|.. +..+|+||||+|++||.+|++|||||||||++++|.|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 24799999999999999999999999999999999999999999999999998765 77889999
Q ss_pred EEEccCCccCcc-cHHHHhccCC-----C-CCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHH
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYGH-----E-SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~~-----~-~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiAR 1234 (1350)
|||||+|.++.. |++|||.+.. + ...++.+.+.++..++.+.- ......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998765 9999998642 1 12345677888888776521 2234569999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRACS-G-KTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1235 ALLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-g-~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
||+.+|++|||||||++||+.+...+.+.|+++.+ | +||+++||.++.+.. ||||++|++|+++..|++++|...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999774 5 799999999999987 999999999999999999998654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=353.65 Aligned_cols=233 Identities=30% Similarity=0.497 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCC-CCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C----CCcEEEECCeeCCCCCHHH
Q 000689 428 IELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD-P----TSGQVLLDGHDIKSLKLRW 501 (1350)
Q Consensus 428 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~----~~G~i~i~g~~~~~~~~~~ 501 (1350)
++++|++.+|+... ...+++||||++++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999997532 3569999999999999999999999999999999999998 4 5799999999999998775
Q ss_pred H---h-ccEEEEccCCCc-cc--ccHHHHhh----cCCCCCCHHHHHHHHHHhchHHHHhcCCCCcc---chhcCCCCCC
Q 000689 502 L---R-QQIGLVSQEPAL-FA--TTIKENIL----LGRPDADLNEIEEAARVANAYSFIIKLPDGFD---TQVRERGVQL 567 (1350)
Q Consensus 502 ~---r-~~i~~v~Q~~~l-f~--~ti~eNi~----~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~---t~~~~~g~~L 567 (1350)
+ | +.|++|||||.- ++ -||.+-|. .-....+.+|. .+. +.+.++.. |+. ......+.+|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea---~~~--a~~~L~~V--gi~~~~~~~~~YPhel 154 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA---KER--AIELLELV--GIPDPERRLKSYPHEL 154 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHH---HHH--HHHHHHHc--CCCCHHHHHhhCCccc
Confidence 3 3 479999999842 22 25554443 21110011111 111 12222222 333 3567889999
Q ss_pred ChHHHHHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEE
Q 000689 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE 644 (1350)
Q Consensus 568 SgGqkqri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~ 644 (1350)
|||||||+.||-||+.+|++||.||||+|||..+.+.|.+.|+++. .|.|+|+||||+..+.. ||||+||..|+|+|
T Consensus 155 SGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 9999999999999999999999999999999999999999999986 48999999999999876 99999999999999
Q ss_pred ecChHHHHhccCCcHHHHHHHHH
Q 000689 645 IGTHDELIAKGENGVYAKLIRMQ 667 (1350)
Q Consensus 645 ~g~~~~l~~~~~~~~y~~l~~~~ 667 (1350)
.|+.++++.++.+.+.+.|++..
T Consensus 235 ~g~~~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 235 EGPVEEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred eCCHHHHhcCCCChHHHHHHHhC
Confidence 99999999998777777777543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=356.09 Aligned_cols=215 Identities=33% Similarity=0.516 Sum_probs=178.2
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++||+++|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.+
T Consensus 1 ~l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i 73 (232)
T PRK10771 1 MLKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPV 73 (232)
T ss_pred CeEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccE
Confidence 3789999999963 1 2399999999999999999999999999999999999999999999998765442 5689
Q ss_pred EEEccCCCcccc-cHHHHhhcCCC-CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcCC
Q 000689 507 GLVSQEPALFAT-TIKENILLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 584 (1350)
+|++|++.+|.+ |+.||+.++.. .....+ .....+.+.+..+ |++..+......||||||||++||||++++
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999975 99999987531 111000 0011122233333 555555666679999999999999999999
Q ss_pred CCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHHHHhc
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 585 ~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999874 38899999999999875 999999999999999999988754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=362.21 Aligned_cols=214 Identities=29% Similarity=0.392 Sum_probs=176.1
Q ss_pred EEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEECCeeCCCCCHHHH-hc
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF--YDPTSGQVLLDGHDIKSLKLRWL-RQ 504 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~i~g~~~~~~~~~~~-r~ 504 (1350)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 3699999999999999999999999999999999999 47999999999999988776554 45
Q ss_pred cEEEEccCCCcccc-cHHHHhhcCCCC---------CCHHHHHHHHHHhchHHHHhcCCCCccc-hhcCCCC-CCChHHH
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPD---------ADLNEIEEAARVANAYSFIIKLPDGFDT-QVRERGV-QLSGGQK 572 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~---------~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGqk 572 (1350)
.++||+|++.+|.+ |++||+.+.... .+.++.. ..+.+.+..+ |++. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998876 999999764211 0111111 1123333333 4442 2334444 5999999
Q ss_pred HHHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEEEecChH
Q 000689 573 QRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK--ADVVAVLQQGSVSEIGTHD 649 (1350)
Q Consensus 573 qri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~i~~~g~~~ 649 (1350)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999885 47999999999999975 7999999999999999987
Q ss_pred HH
Q 000689 650 EL 651 (1350)
Q Consensus 650 ~l 651 (1350)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=362.98 Aligned_cols=203 Identities=28% Similarity=0.464 Sum_probs=172.8
Q ss_pred EEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHHhhcccE
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998642 34689
Q ss_pred EEccCCccCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHH
Q 000689 1163 IVPQEPCLFA-STIYENIAYGHE--SATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~-gTIreNL~~~~~--~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARA 1235 (1350)
|+||++.+|. .|++||+.++.. .... +++.++++..++.+.. .....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999887 599999986421 1222 2345555555554433 33456799999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe--CCeEEEecChh
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVID--DGKVAELGSHS 1304 (1350)
Q Consensus 1236 LLr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~g~TvI~IaHRlsti~~-~DrI~Vl~--~GrIvE~Gt~~ 1304 (1350)
|+++|++|||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999863 48999999999999865 99999998 59999988653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=361.77 Aligned_cols=207 Identities=29% Similarity=0.471 Sum_probs=174.8
Q ss_pred eEEEEEEEEECCCCCCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCHHHHhccE
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~~~~r~~i 506 (1350)
+|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..+
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~ 72 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAER 72 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcE
Confidence 3789999999964 3599999999999999999999999999999999999999999999999988642 2469
Q ss_pred EEEccCCCccc-ccHHHHhhcCCC--CCCHHHHHHHHHHhchHHHHhcCCCCccchhcCCCCCCChHHHHHHHHHHHhcC
Q 000689 507 GLVSQEPALFA-TTIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~iARal~~ 583 (1350)
+|++|++.+|. .|++||+.++.. .....+.. ..+.+.+..+ |++......+.+||||||||++|||||+.
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999887 599999987532 11211111 1223444444 66555667788999999999999999999
Q ss_pred CCCEeEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CCEEEEecCh
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQ--QGSVSEIGTH 648 (1350)
Q Consensus 584 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~i~~~g~~ 648 (1350)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999873 48999999999999865 99999998 5999998764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=363.85 Aligned_cols=224 Identities=30% Similarity=0.462 Sum_probs=185.7
Q ss_pred eEEEEEEEEECCCC------CCCccccceEEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEECCeeCCCCCH-
Q 000689 427 LIELKHVDFSYPSR------PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL- 499 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~i~g~~~~~~~~- 499 (1350)
.|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999731 02469999999999999999999999999999999999999999999999999887665
Q ss_pred --HHHhccEEEEccCCC--cc-cccHHHHhhcCCCCCCHHHHHHHHHHhchHHHHhcCCCCccc-hhcCCCCCCChHHHH
Q 000689 500 --RWLRQQIGLVSQEPA--LF-ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDT-QVRERGVQLSGGQKQ 573 (1350)
Q Consensus 500 --~~~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGqkq 573 (1350)
..+++.++|++|++. ++ ..|+.||+.+...... ..........+.+.+..+ |+++ ..+..+.+|||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHH
Confidence 346789999999983 44 3599999865321000 000111122334555555 7764 567788899999999
Q ss_pred HHHHHHHhcCCCCEeEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEEEecChHH
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650 (1350)
Q Consensus 574 ri~iARal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i~~~g~~~~ 650 (1350)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999999999999999999999999999999999998753 8999999999999975 99999999999999999999
Q ss_pred HHhc
Q 000689 651 LIAK 654 (1350)
Q Consensus 651 l~~~ 654 (1350)
+...
T Consensus 239 ~~~~ 242 (268)
T PRK10419 239 KLTF 242 (268)
T ss_pred ccCC
Confidence 8754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=377.93 Aligned_cols=213 Identities=27% Similarity=0.455 Sum_probs=180.3
Q ss_pred EEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCC----HHHhhcccE
Q 000689 1087 HVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN----LKSLRRHMA 1162 (1350)
Q Consensus 1087 nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~----l~~lR~~i~ 1162 (1350)
|++++|++. . + |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999632 3 4 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEccCCccCcc-cHHHHhccCCCCCCH----HHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhc
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHESATE----SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~~td----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALL 1237 (1350)
||||++.+|.. |++||+.++...... +.+.+.++..++.++ ......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 999999976432221 234555555555443 33445689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhcCCCch
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314 (1350)
Q Consensus 1238 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~~~~g~ 1314 (1350)
++|++|||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++... +...
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~ 226 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS-PDLP 226 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC-cCcc
Confidence 99999999999999999999999999998653 7999999999999866 999999999999999999999876 4544
Q ss_pred hH
Q 000689 1315 YA 1316 (1350)
Q Consensus 1315 y~ 1316 (1350)
|.
T Consensus 227 ~~ 228 (354)
T TIGR02142 227 WL 228 (354)
T ss_pred cc
Confidence 54
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=334.57 Aligned_cols=220 Identities=27% Similarity=0.459 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCCcccceeEEEeCCCEEEEEcCCCCCHHHHHHHHhccCCCCccEEEECCccCCCCCHHH-hhcc
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS-LRRH 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~iDG~di~~~~l~~-lR~~ 1160 (1350)
-++++||+..|.. ..+|++|||++++||+|+++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999963 47999999999999999999999999999999999999999999999999999998765 6778
Q ss_pred cEEEccCCccCcc-cHHHHhccCCCCCCHHHHHHHHHHhccHHHHhcCCCCccccccCCCCCCChhHHHHHHHHHHhccC
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~~~td~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQrlaiARALLr~ 1239 (1350)
|+||||...+|.. ||.|||..|.....+++-+ ...+++.-+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999965 9999999764222211111 111222223345 355556677889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCeEEEecChhHHhhc
Q 000689 1240 AEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1240 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--g~TvI~IaHRlsti~~-~DrI~Vl~~GrIvE~Gt~~eLl~~ 1309 (1350)
|++|+|||||.+|-|.--+.|.++|+++.+ |.||++|-++...... +||.+||++|||+.+|+.++|..+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 6799999999998765 999999999999999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1350 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-106 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-98 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-98 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-97 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-87 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-96 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-85 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-69 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-59 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-69 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-69 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-67 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-65 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-61 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-55 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-46 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-52 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-51 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-51 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-51 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-51 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-51 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-50 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-50 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-49 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-49 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-48 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-47 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-46 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-47 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-23 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-22 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-21 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-19 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-21 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-21 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-19 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-20 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-18 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-19 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-18 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-18 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-18 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-18 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-18 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-18 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-18 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-17 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-17 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 8e-17 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-17 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 9e-17 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-17 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-16 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-16 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-16 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-16 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-16 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-16 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-15 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-15 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-15 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-15 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-15 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-14 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-13 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-12 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-10 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-09 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-09 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-09 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-08 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 7e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 7e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1661 bits (4303), Expect = 0.0
Identities = 511/1282 (39%), Positives = 745/1282 (58%), Gaps = 34/1282 (2%)
Query: 64 ENNSSSSSSAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLR 123
+ + S S+ +K V + +FR+A LD + M +G+L A +HG + P+ +
Sbjct: 10 RADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMML 69
Query: 124 FFADLVNSFGSNVNN---------------MDKMMQEVLKYAFYFLVVGAAIWASSWAEI 168
F D+ +SF S N K+ +E+ YA+Y+ +GA + ++ ++
Sbjct: 70 IFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQV 129
Query: 169 SCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGN 228
S W RQ K+R K+ A +NQ++ +FD ++ + D + + I +K+G
Sbjct: 130 SFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGM 188
Query: 229 FIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGN 288
F +ATF GF +GF+ W+L LV LA+ P++ + I A L+ K A ++AG
Sbjct: 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGA 248
Query: 289 IVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYAL 348
+ E+ + IR V AF G+ K L+ Y++ L+ A+RLG K + +GA + +++ SYAL
Sbjct: 249 VAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYAL 308
Query: 349 LLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408
WYG LV + G + F+V+IG ++ QA+P+I AFA A+ AA ++F+IID+K
Sbjct: 309 AFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNK 368
Query: 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSG 468
PSID S+SG + D++ G +E K++ FSYPSR EV+IL +L V +G+T+ALVG+SG G
Sbjct: 369 PSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428
Query: 469 KSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGR 528
KST V L++R YDP G V +DG DI+++ +R+LR+ IG+VSQEP LFATTI ENI GR
Sbjct: 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR 488
Query: 529 PDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAIL 588
D ++EIE+A + ANAY FI+KLP FDT V ERG QLSGGQKQRIAIARA+++NP IL
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 589 LLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648
LLDEATSALD+ESE +VQ ALD+ GRTT+VIAHRLST+R ADV+A G + E G H
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608
Query: 649 DELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPY 708
DEL+ + G+Y KL+ Q A +E L N S + S S
Sbjct: 609 DELMRE--KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSK----------DSGS 656
Query: 709 SRRLSDFSTSDFSLSLDATYPSYRHEKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVI 768
S + D E L +SFWR+ K+NS EW Y +VG ++I
Sbjct: 657 SLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII 716
Query: 769 CGSLNAFFAYVLSAIMSVYYNPDHAYMIR-EIAKYCYLLIGLSSAELLFNTLQHSFWDIV 827
G L F+ + S ++ V+ N R + L + L + LQ +
Sbjct: 717 NGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKA 776
Query: 828 GENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNT 887
GE LTKR+R + ++L+ +++WFD +N + + RLA DA V+ A G R+ VI QN
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 888 ALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEA 947
A + + W+L L+L+A+ P++ A V++ + G + + + ++A EA
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 948 IGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYS 1007
I N RTV + E +++ +LQ P R K + G + Q +Y SYA +
Sbjct: 897 IENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956
Query: 1008 SWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEP 1067
++LV + F + VF ++ A + + APD+ K + + ++++ EI+
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS 1016
Query: 1068 DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSV 1127
P+ L G V+ V F+YP+RP IP+ + LSL + G+TLALVG SGCGKS+V
Sbjct: 1017 YSTQGLK-PNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTV 1075
Query: 1128 IALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES-- 1185
+ L++RFY+P +G V +DGK+I++ N++ LR + IV QEP LF +I ENIAYG S
Sbjct: 1076 VQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRV 1135
Query: 1186 ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL 1245
+ EI+ AA+ AN +FI SLPD Y T VG++G QLSGGQKQR+AIARA VR+ I+LL
Sbjct: 1136 VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLL 1195
Query: 1246 DEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSH 1305
DEATSALD ESE+ VQEALD+A G+T IV+AHRLSTI+NA +I VI +GKV E G+H
Sbjct: 1196 DEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQ 1255
Query: 1306 LLKNNPDGCYARMIQLQRFTHS 1327
LL G Y M+ +Q
Sbjct: 1256 LLAQK--GIYFSMVSVQAGAKR 1275
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 737 bits (1904), Expect = 0.0
Identities = 227/636 (35%), Positives = 347/636 (54%), Gaps = 7/636 (1%)
Query: 47 SPQAQAQETTTTTKRQMENNSSSSSSAANSEPKKPSDVTPVGLGELFRFADSLDYVLMAI 106
S + + + R+ +++ DV P + + + ++ +
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNST-EWPYFVV 709
Query: 107 GSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWA 166
G A ++G P F F+ +V F +N + Q ++ FL++G + + +
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVF-TNGGPPETQRQNSNLFSLLFLILGIISFITFFL 768
Query: 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYA-INTDAVIVQDAISEK 225
+ + GE + ++R ++ L QDV +FD T+ + + DA V+ A +
Sbjct: 769 QGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSR 828
Query: 226 LGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQ 285
L +A TG + WQL L+ LA+VP+IA+ G + L+ A K ++ L
Sbjct: 829 LAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG 888
Query: 286 AGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCS 345
+G I + + R V + E K Y+ +L++ R K G+ T +++ S
Sbjct: 889 SGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFS 948
Query: 346 YALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRII 405
YA +G YLV + A++ G +A+ Q + +AKA V+A+ I RII
Sbjct: 949 YAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008
Query: 406 DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSS 465
+ P ID S GL+ + + G ++ V F+YP+RP + +L SL V G+T+ALVGSS
Sbjct: 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068
Query: 466 GSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENIL 525
G GKSTVV L+ERFYDP +G V LDG +IK L ++WLR Q+G+VSQEP LF +I ENI
Sbjct: 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128
Query: 526 LGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583
G EI AA+ AN + FI LPD ++T+V ++G QLSGGQKQRIAIARA+++
Sbjct: 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188
Query: 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVS 643
P ILLLDEATSALD+ESEK+VQEALD+ GRT +VIAHRLSTI+ AD++ V+Q G V
Sbjct: 1189 QPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248
Query: 644 EIGTHDELIAKGENGVYAKLIRMQEAAHETALNNAR 679
E GTH +L+A+ G+Y ++ +Q A + +++
Sbjct: 1249 EHGTHQQLLAQ--KGIYFSMVSVQAGAKRSYVHHHH 1282
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 682 bits (1762), Expect = 0.0
Identities = 222/629 (35%), Positives = 329/629 (52%), Gaps = 23/629 (3%)
Query: 739 KEQASSFWRLAK-MNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVY---------- 787
K+ A S + + + +Y LVG++ ++I G + + +
Sbjct: 29 KKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNS 88
Query: 788 -------YNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKML 840
A + E+ Y Y G+ + L+ +Q SFW + ++R+K
Sbjct: 89 TNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFF 148
Query: 841 AAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVL 900
A++ EI WFD ++ + RL D + + IGD+I + Q A GF
Sbjct: 149 HAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTR 206
Query: 901 QWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSE 960
W+L LV++A+ PV+ + + + F+ A++KA +A E + +RTV AF +
Sbjct: 207 GWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266
Query: 961 LMIVGLFSSNLQTPLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSK 1020
+ +++NL+ R K A G A +YASYAL WY + LV +
Sbjct: 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQ 326
Query: 1021 TIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLR 1080
+ VF +++ A + F A VF ++D K I+ PD ++
Sbjct: 327 VLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH-KPDNIQ 385
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
G +E K++ FSYPSR ++ I + L+L+ ++G+T+ALVG SGCGKS+ + L+QR Y+P G
Sbjct: 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANA 1200
V IDG+DIR N++ LR + +V QEP LFA+TI ENI YG E T EI +A + ANA
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANA 505
Query: 1201 DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSV 1260
FI LP + T VGERG QLSGGQKQR+AIARA VR +I+LLDEATSALD ESE V
Sbjct: 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565
Query: 1261 QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320
Q ALD+A G+TTIV+AHRLST+RNA VIA D G + E G+H L++ G Y +++
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK--GIYFKLVM 623
Query: 1321 LQRFTHSQVIGMTSGSSSSARPKDDEERE 1349
Q + +G + S D +
Sbjct: 624 TQTAGNEIELGNEACKSKDEIDNLDMSSK 652
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 538 bits (1388), Expect = e-177
Identities = 184/568 (32%), Positives = 286/568 (50%), Gaps = 18/568 (3%)
Query: 102 VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIW 161
++ I + L+ D + FG + ++ L ++ G +
Sbjct: 28 IVAGIALILNAASDTFMLSLLKPLLD--DGFGKT--DRSVLLWMPLVVIGLMILRGITSY 83
Query: 162 ASSWAEISCWM-WTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQD 220
SS+ + W + + MR + + V +FD + T ++ I D+ V
Sbjct: 84 ISSY-----CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVAS 137
Query: 221 AISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQ 280
+ S L + A+ + F + F WQL+++ + + P++++ + + ++ Q
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197
Query: 281 EALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYF 340
+ Q EQ + + V F G+ + + + G K A +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 341 VVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAK 400
+ + A +L+ + G +++ L + F + A
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 401 IFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIA 460
+F I+D + D E +D +G +E ++V F+YP R EV L N +L +PAGKT+A
Sbjct: 318 LFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVA 373
Query: 461 LVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTI 520
LVG SGSGKST+ SLI RFYD G +L+DGHD++ L LR Q+ LVSQ LF T+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 521 KENILLGRPDA-DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579
NI R + +IEEAAR+A A FI K+ +G DT + E GV LSGGQ+QRIAIAR
Sbjct: 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493
Query: 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQ 639
A+L++ IL+LDEATSALD+ESE+ +Q ALD RT+LVIAHRLSTI +AD + V++
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED 553
Query: 640 GSVSEIGTHDELIAKGENGVYAKLIRMQ 667
G + E GTH EL+A+ +GVYA+L +MQ
Sbjct: 554 GIIVERGTHSELLAQ--HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 507 bits (1308), Expect = e-166
Identities = 177/582 (30%), Positives = 305/582 (52%), Gaps = 17/582 (2%)
Query: 744 SFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYC 803
+F RL +P +V + ++ + + F +L ++ + ++ +
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWM---P 68
Query: 804 YLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAA 863
++IGL + + + V + +R ++ ++ +A+FD+ + + +
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 864 RLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQK 923
R+ D+ V S+ + +V+ A ++ F W+L+++L+ + P+V A +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 924 MFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQ 983
+ S +M+ + T A + + + V F + + F +R K
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNK-MRLQGMKMV 245
Query: 984 IAGSGYG-VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT-L 1041
A S + Q + A L+ +S+ TI V M++ ++LT +
Sbjct: 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSSMIALMRPLKSLTNV 304
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
F +G A +++F +LD + E + V DR G++E ++V F+YP R ++P
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEK----DEGKRVIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
R+++L+ AGKT+ALVG SG GKS++ +L+ RFY+ G +++DG D+R+Y L SLR +
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1162 AIVPQEPCLFASTIYENIAYGH-ESATESEIIEAARLANADKFISSLPDGYKTFVGERGV 1220
A+V Q LF T+ NIAY E + +I EAAR+A A FI+ + +G T +GE GV
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGGQ+QR+AIARA +R + I++LDEATSALD ESER++Q ALD +T++V+AHRL
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
STI A I V++DG + E G+HS LL + G YA++ ++Q
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQH--GVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 531 bits (1371), Expect = e-175
Identities = 177/572 (30%), Positives = 282/572 (49%), Gaps = 26/572 (4%)
Query: 102 VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIW 161
V+ I + L+ D FG+ + + V G + +
Sbjct: 28 VVSTIALVINAAADTYMISLLKPLLD--EGFGNA--ESNFLRILPFMILGLMFVRGLSGF 83
Query: 162 ASSWAEISCWM-WTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQD 220
ASS+ + W ++MR + ++ V++FD E T ++ I D+ V
Sbjct: 84 ASSY-----CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAG 137
Query: 221 AISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQ 280
A S L + + A+ + + F WQL+LV + V P++A + + K++ Q
Sbjct: 138 ATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQ 197
Query: 281 EALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYF 340
A+ + EQ + +VV ++ G+ + + ++ K A+ +
Sbjct: 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQM 257
Query: 341 VVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSIS----AFAKAKV 396
+ + +L+ L T V L + +++ F +
Sbjct: 258 IASLALFAVLFLASVDS----IRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 397 AAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAG 456
A +F ++D + D E + V+G +++K V F+Y + E L++ S ++P G
Sbjct: 314 ACQTLFGLMDLETERDNGK---YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQG 369
Query: 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALF 516
KT+ALVG SGSGKST+ +L RFYD SG + LDGHD++ KL LR+ LVSQ LF
Sbjct: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 517 ATTIKENILLG-RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575
TI NI + +IE+AAR A+A FI +P G DT + E G LSGGQ+QR+
Sbjct: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
Query: 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVA 635
AIARA+L++ +L+LDEATSALD+ESE+ +Q ALD +T LVIAHRLSTI +AD +
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
Query: 636 VLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
V+ +G + E G H +L+A+ +G YA+L R+Q
Sbjct: 550 VVDEGEIIERGRHADLLAQ--DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 498 bits (1284), Expect = e-162
Identities = 186/582 (31%), Positives = 292/582 (50%), Gaps = 17/582 (2%)
Query: 744 SFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYC 803
+F RL +V ++ VI + + + +L ++ + + +R +
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRIL---P 68
Query: 804 YLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAA 863
++++GL L V N+ ++R ++ + + +FDQ + + +
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLS 126
Query: 864 RLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQK 923
R+ D+ V A + IV+ A ++ T F W+L+LVLI V PVV A
Sbjct: 127 RITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVS 186
Query: 924 MFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQ 983
+ S +M+ A T A + + + V ++ + + F + +R+ K
Sbjct: 187 KRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNS-MRQQTMKLV 245
Query: 984 IAGSGYG-VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLT-L 1041
A S V Q + L+ +S T V M + LT +
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG-TFTVVFSAMFGLMRPLKALTSV 304
Query: 1042 APDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIF 1101
+F +G A +++F L+D +TE + +R+ GEV++K V F+Y + + P
Sbjct: 305 TSEFQRGMAACQTLFGLMDLETER----DNGKYEAERVNGEVDVKDVTFTYQGK-EKPAL 359
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+S GKT+ALVG SG GKS++ L RFY+ SG + +DG D+R Y L +LRRH
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 1162 AIVPQEPCLFASTIYENIAYGHES-ATESEIIEAARLANADKFISSLPDGYKTFVGERGV 1220
A+V Q LF TI NIAY E T +I +AAR A+A +FI ++P G T +GE G
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGGQ+QRVAIARA +R A +++LDEATSALD ESER++Q ALD KT +V+AHRL
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRL 539
Query: 1281 STIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
STI A I V+D+G++ E G H+ LL + G YA++ ++Q
Sbjct: 540 STIEQADEILVVDEGEIIERGRHADLLAQD--GAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 524 bits (1352), Expect = e-172
Identities = 188/570 (32%), Positives = 281/570 (49%), Gaps = 12/570 (2%)
Query: 99 LDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGA 158
++ I + P+ +++ D V + + +K+ + +
Sbjct: 18 ATIIVGIIKFGIPML----IPLLIKYAIDGVIN-NHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 159 AIWASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIV 218
+ WT + +R K +++ + V+ + D
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQT 131
Query: 219 QDAISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGK 278
+D I L N T + ++ F +L L L + P + + L KL +
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 279 SQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGAT 338
+AL++ + + V I VV +F E + + K A
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 339 YFVVFCSYALLLWYGGYLV-RHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVA 397
V +++ G YL T G LA + ++ G L + S + ++ +
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFG-PLRRLVASFTTLTQSFAS 310
Query: 398 AAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGK 457
++F++ID I N ++ G I++ HV F Y E IL + +L++ G+
Sbjct: 311 MDRVFQLIDEDYDIK-NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368
Query: 458 TIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA 517
T+A VG SG GKST+++LI RFYD TSGQ+L+DGH+IK LR QIGLV Q+ LF+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 518 TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAI 577
T+KENILLGRP A E+ EAA++ANA+ FI+ LP G+DT+V ERGV+LSGGQKQR++I
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 578 ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVL 637
AR L NP IL+LDEATSALD ESE ++QEALD RTTL++AHRLSTI AD + V+
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 638 QQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
+ G + E GTH ELIAK G Y L +Q
Sbjct: 549 ENGHIVETGTHRELIAKQ--GAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 480 bits (1239), Expect = e-156
Identities = 156/584 (26%), Positives = 264/584 (45%), Gaps = 15/584 (2%)
Query: 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNP----DHAYMIREIA 800
R + P + +I + ++ + N +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 801 KYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESAR 860
L ++ + +R+K+ + ++ N+ +
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119
Query: 861 IAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATV 920
+ +R+ D + I + I + +++A + F L +L L + +FP +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 921 LQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFW 980
+ ++ + + A ++ E + + V +F E F
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTN-FLTRAL 238
Query: 981 KGQIAGSGYG-VAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETL 1039
K + + + ++L G T+ F+ + G L
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVG-TLAAFVGYLELLFGPLRRL 297
Query: 1040 T-LAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDI 1098
+ +M VF L+D +I + A P+ +G +++ HV F Y +
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIE-IKQGRIDIDHVSFQYNDN-EA 354
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
PI +D++L G+T+A VG SG GKS++I L+ RFY+ +SG+++IDG +I+ + SLR
Sbjct: 355 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414
Query: 1159 RHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGER 1218
+ +V Q+ LF+ T+ ENI G +AT+ E++EAA++ANA FI +LP GY T VGER
Sbjct: 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
GV+LSGGQKQR++IAR F+ I++LDEATSALD ESE +QEALD +TT++VAH
Sbjct: 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
Query: 1279 RLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
RLSTI +A I VI++G + E G+H L+ G Y + +Q
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHRELIAKQ--GAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 494 bits (1274), Expect = e-165
Identities = 105/270 (38%), Positives = 157/270 (58%), Gaps = 6/270 (2%)
Query: 411 IDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKS 470
+ S L ++ GL++ + V F+YP+ P V++L + T+ GK ALVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 471 TVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPD 530
TV +L++ Y PT G+VLLDG + +L Q+ V QEP LF + +ENI G
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 531 -ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
+ EI A + A+ FI P G+DT+V E G QLSGGQ+Q +A+ARA+++ P +L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 590 LDEATSALDSESEKLVQEALDR--FMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
LD ATSALD+ ++ VQ L RT L+I +LS +A + L++GSV E GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 648 HDELIAKGENGVYAKLIRMQEAAHETALNN 677
H +L+ +G G Y ++ A + A ++
Sbjct: 240 HLQLMERG--GCYRSMVEALAAPSDAAAHH 267
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 460 bits (1187), Expect = e-153
Identities = 104/267 (38%), Positives = 154/267 (57%), Gaps = 7/267 (2%)
Query: 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGK 1124
+ P P ++G V+ + V F+YP+ P++ + + L+ GK ALVGP+G GK
Sbjct: 1 MSPLSGSLAP--LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGK 58
Query: 1125 SSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYG-H 1183
S+V AL+Q Y+P+ G+V++DG+ + +Y+ L +A V QEP LF + ENIAYG
Sbjct: 59 STVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT 118
Query: 1184 ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIM 1243
+ T EI A + A FIS P GY T VGE G QLSGGQ+Q VA+ARA +RK ++
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 1244 LLDEATSALDAESERSVQEALDRA--CSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301
+LD ATSALDA ++ VQ L + + +T +++ +LS AH I + +G V E G
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 1302 SHSHLLKNNPDGCYARMIQLQRFTHSQ 1328
+H L++ GCY M++
Sbjct: 239 THLQLMERG--GCYRSMVEALAAPSDA 263
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-154
Identities = 108/244 (44%), Positives = 163/244 (66%), Gaps = 2/244 (0%)
Query: 424 VSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPT 483
I +++ F Y V IL+N +L++ G+ I +VG SGSGKST+ LI+RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 484 SGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVA 543
+GQVL+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
A+ FI +L +G++T V E+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
++ + + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ +Y+ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYL 241
Query: 664 IRMQ 667
++Q
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 432 bits (1113), Expect = e-142
Identities = 101/245 (41%), Positives = 153/245 (62%), Gaps = 2/245 (0%)
Query: 1078 RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137
++ +++ F Y I +++L + G+ + +VG SG GKS++ L+QRFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 1138 SSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARL 1197
+G+V+IDG D+ + LRR + +V Q+ L +I +NI+ + + ++I AA+L
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
A A FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1258 RSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ + + C G+T I++AHRLST++NA I V++ GK+ E G H LL P+ Y+
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS-EPESLYSY 240
Query: 1318 MIQLQ 1322
+ QLQ
Sbjct: 241 LYQLQ 245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 451 bits (1163), Expect = e-149
Identities = 115/247 (46%), Positives = 164/247 (66%), Gaps = 5/247 (2%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++ +HVDF+Y ++ L + S IA G SG GKST+ SL+ERFY PT+G+
Sbjct: 1 MLSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAARVANA 545
+ +DG I ++ L R QIG VSQ+ A+ A TI+EN+ G D ++ + +A A
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
SF+ +PD +T+V ERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LDSESE +V
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
Q+ALD M GRTTLVIAHRLSTI AD + +++G ++ G H+EL+A + +YAK +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVS 236
Query: 666 MQEAAHE 672
Q +
Sbjct: 237 EQLTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 413 bits (1065), Expect = e-135
Identities = 106/247 (42%), Positives = 160/247 (64%), Gaps = 6/247 (2%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ +HVDF+Y I RD+S A+ +A GPSG GKS++ +L++RFY+P++G +
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE-SATESEIIEAARLANAD 1201
IDG+ I +L++ R + V Q+ + A TI EN+ YG E T+ ++ + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
F+ ++PD T VGERGV++SGGQ+QR+AIARAF+R +I++LDEAT++LD+ESE VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
+ALD G+TT+V+AHRLSTI +A I I+ G++ G H+ L+ + YA+ +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH--PLYAKYVSE 237
Query: 1322 QRFTHSQ 1328
Q T Q
Sbjct: 238 Q-LTVGQ 243
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-142
Identities = 109/263 (41%), Positives = 161/263 (61%), Gaps = 4/263 (1%)
Query: 410 SIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGK 469
++ S + IE V+FSYP + R L + + +P+G T ALVG +GSGK
Sbjct: 1 GLESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGK 59
Query: 470 STVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRP 529
ST+ L+ RFYD G + + G ++ +R IG+V Q+ LF TIK NIL G+
Sbjct: 60 STIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL 118
Query: 530 DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILL 589
DA E+ +A + A Y FI LP +DT V +G++LSGG++QRIAIAR +LK+P I++
Sbjct: 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 590 LDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHD 649
DEATS+LDS++E L Q+A++ RT ++IAHRLSTI A+ + +L +G + E GTH
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHK 238
Query: 650 ELIAKGENGVYAKLIRMQEAAHE 672
+L+ NG YA++ MQ ++
Sbjct: 239 DLLKL--NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-133
Identities = 102/255 (40%), Positives = 157/255 (61%), Gaps = 3/255 (1%)
Query: 1068 DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSV 1127
+ T + +E V+FSYP + + + ++ +G T ALVG +G GKS++
Sbjct: 3 ESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTI 62
Query: 1128 IALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESAT 1187
L+ RFY+ G + I GK++ KYN S+R + IVPQ+ LF TI NI YG AT
Sbjct: 63 AKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 121
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
+ E+I+A + A FI +LP + T VG +G++LSGG++QR+AIAR ++ +I++ DE
Sbjct: 122 DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307
ATS+LD+++E Q+A++ +T I++AHRLSTI +A I +++ GK+ E G+H LL
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
Query: 1308 KNNPDGCYARMIQLQ 1322
K N G YA M +Q
Sbjct: 242 KLN--GEYAEMWNMQ 254
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 429 bits (1106), Expect = e-136
Identities = 172/571 (30%), Positives = 287/571 (50%), Gaps = 28/571 (4%)
Query: 102 VLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIW 161
+ S V P + ++ + +Y + A
Sbjct: 43 FVFVTVSSILGVLS---PYLIG---KTIDVVFVPRR-----FDLLPRYMLILGTIYALTS 91
Query: 162 ASSWAEISCWMWTGERQSIKMRIKYLEAALNQ-DVQYFDTEVRTSDVVYAINTDAVIVQD 220
W + + + ++R + L L + V +FD D++ + D + +
Sbjct: 92 LLFWLQGKIMLTLSQDVVFRLRKE-LFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINN 149
Query: 221 AISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQ 280
+ + F + T + F L+LVTL++VPL +I I ++ K ++Q
Sbjct: 150 VLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQ 209
Query: 281 EALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYF 340
L Q I+E+ + + V+ F E K ++ + + +++G K+ G+
Sbjct: 210 RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNM 269
Query: 341 VVFCSYALLLWYGGYLVRHHFTNGGLAIATM--FAVMIGGLA--LAQAAPSISAFAKAKV 396
V +AL+ +GG+L + + T+ F L + + + A
Sbjct: 270 VNNLGFALISGFGGWLA----LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 397 AAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAG 456
+A +IF I+D + D +EL V G IE K+V FSY + +L + + + G
Sbjct: 326 SAERIFEILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPG 381
Query: 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALF 516
+ +ALVG +GSGK+T+V+L+ RFYD GQ+L+DG DI+ +K LR IG+V Q+ LF
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 517 ATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576
+TT+KEN+ G P A EI+EAA++ ++ FI LP+G++T + + G LS GQ+Q +A
Sbjct: 442 STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501
Query: 577 IARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAV 636
I RA L NP IL+LDEATS +D+++EK +Q A+ + M G+T+++IAHRL+TI+ AD++ V
Sbjct: 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV 561
Query: 637 LQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
L+ G + E+G HDELI K G Y +L Q
Sbjct: 562 LRDGEIVEMGKHDELIQK--RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-127
Identities = 177/613 (28%), Positives = 303/613 (49%), Gaps = 60/613 (9%)
Query: 734 EKLAFKEQASSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHA 793
EK A K ++ RL P ++ V + L Y++ + V + P
Sbjct: 14 EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR- 72
Query: 794 YMIREIAKYCYLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQ 853
+ +Y +L + + L LQ + +++ R+R+++ + + + +FD+
Sbjct: 73 --FDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR 130
Query: 854 EENESARIAARLALDANNVRSAIGDRIQVIVQ--NTALMLVACTAG-FVLQWRLALVLIA 910
I +R+ D +N+ + +G I+Q + + L F + L+LV ++
Sbjct: 131 --TPHGDIISRVINDVDNINNVLG---NSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLS 185
Query: 911 VFPVVVAATVLQKMFMKGFSGDMEAAHSKAT-QLAG---EAIGNVRTVAAFNSELMIVGL 966
+ P+ V T + + + + QL G E I + + F E +
Sbjct: 186 IVPLTVLIT----QIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEK 241
Query: 967 FSSNLQTPLRRCFWKGQ-IAGSGYGVAQFCLYASYALGLWYSSWLVKHG------ISDFS 1019
F + LR+ K Q +G + +AL + WL I+ F
Sbjct: 242 FD-RVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFI 300
Query: 1020 KTIRVF----------MVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDD 1069
R F ++ A +AE R +F++LD E E DD
Sbjct: 301 GYSRQFTRPLNELSNQFNMIQMALASAE---------------R-IFEILD--LEEEKDD 342
Query: 1070 PDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIA 1129
PDA + + +RGE+E K+V FSY P+ +D++ + G+ +ALVGP+G GK++++
Sbjct: 343 PDAVELRE-VRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVN 399
Query: 1130 LVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATES 1189
L+ RFY+ G++++DG DIRK SLR + IV Q+ LF++T+ EN+ YG+ AT+
Sbjct: 400 LLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDE 459
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
EI EAA+L ++D FI LP+GY+T + + G LS GQ+Q +AI RAF+ +I++LDEAT
Sbjct: 460 EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEAT 519
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
S +D ++E+S+Q A+ + GKT+I++AHRL+TI+NA +I V+ DG++ E+G H L++
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
Query: 1310 NPDGCYARMIQLQ 1322
G Y + Q
Sbjct: 580 R--GFYYELFTSQ 590
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-132
Identities = 132/271 (48%), Positives = 179/271 (66%), Gaps = 6/271 (2%)
Query: 1052 MRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAG 1111
M ++FDLL +TE++ D P A P+ + +G +E ++V FSY +D+S G
Sbjct: 25 MENMFDLLKEETEVK-DLPGAGPLRFQ-KGRIEFENVHFSY--ADGRETLQDVSFTVMPG 80
Query: 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLF 1171
+TLALVGPSG GKS+++ L+ RFY+ SSG + IDG+DI + SLR H+ +VPQ+ LF
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
Query: 1172 ASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231
TI +NI YG +A E+ AA+ A I + P+GY+T VGERG++LSGG+KQRVA
Sbjct: 141 NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVA 200
Query: 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAV 1291
IAR ++ I+LLDEATSALD +ER++Q +L + C+ +TTIVVAHRLST+ NA I V
Sbjct: 201 IARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILV 260
Query: 1292 IDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 1322
I DG + E G H LL G YA M QLQ
Sbjct: 261 IKDGCIVERGRHEALLSRG--GVYADMWQLQ 289
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-130
Identities = 121/293 (41%), Positives = 183/293 (62%), Gaps = 7/293 (2%)
Query: 393 KAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSY-PSRPEVRILNNFSL 451
+ +F ++ + + ++ L G IE ++V FSY R L + S
Sbjct: 20 HMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSF 75
Query: 452 TVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQ 511
TV G+T+ALVG SG+GKST++ L+ RFYD +SG + +DG DI + LR IG+V Q
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 512 EPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQ 571
+ LF TI +NI GR A +E+E AA+ A + I+ P+G+ TQV ERG++LSGG+
Sbjct: 136 DTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
Query: 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKA 631
KQR+AIAR +LK P I+LLDEATSALD+ +E+ +Q +L + RTT+V+AHRLST+ A
Sbjct: 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNA 255
Query: 632 DVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSAR 684
D + V++ G + E G H+ L+++G GVYA + ++Q+ ET+ + ++ R
Sbjct: 256 DQILVIKDGCIVERGRHEALLSRG--GVYADMWQLQQGQEETSEDTKPQTMER 306
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-113
Identities = 147/451 (32%), Positives = 245/451 (54%), Gaps = 20/451 (4%)
Query: 235 TFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTV 294
FV G + S +L+ V + ++P I ++ L K QE+ + +V + +
Sbjct: 150 LFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENL 209
Query: 295 VQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYALLLWYGG 354
+ +RVV AF E + + A + +R + L F+V +LW+GG
Sbjct: 210 LGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGG 269
Query: 355 YLVRHHFTNGGLAIA-------TMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDH 407
LVR++ G +A MF++M+ G L +A +A ++ +++
Sbjct: 270 VLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF-------IVRASASAKRVLEVLNE 322
Query: 408 KPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGS 467
KP+I +++ L L +V G + ++V+F Y + +L+ + +V G +A++G +GS
Sbjct: 323 KPAI-EEADNALALPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGS 380
Query: 468 GKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG 527
GKST+++LI R DP G+V +D D++++KL+ LR I V QE LF+ TIKEN+ G
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 528 RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAI 587
R DA +EI EAA++A + FII LP+G+D++V G SGGQKQR++IARA++K P +
Sbjct: 441 REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500
Query: 588 LLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
L+LD+ TS++D +EK + + L R+ G TT +I ++ T AD + VL +G V+ GT
Sbjct: 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560
Query: 648 HDELIAKGENGVYAKLIRMQEAAHETALNNA 678
H EL+ Y ++ Q +N+A
Sbjct: 561 HKELLE--HCKPYREIYESQFGNGV--MNDA 587
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 339 bits (873), Expect = e-103
Identities = 146/595 (24%), Positives = 264/595 (44%), Gaps = 68/595 (11%)
Query: 747 RLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYM-IREIAKYCYL 805
LA+ P W++A++ + + + +++ + A + K L
Sbjct: 13 TLARYLKPYWIFAVL----APLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGIL 68
Query: 806 LIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLK---NEIAWFDQEENESARIA 862
++ ++ + F +N +R + VL + + F ++ +
Sbjct: 69 MLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-----HTSSLI 123
Query: 863 ARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQ 922
RL D +++ + ++++V+ L + + +L+ VLI + P +V V
Sbjct: 124 TRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWL 183
Query: 923 KMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAF-------------NSELMIVGLFSS 969
++ + + ++ E + VR V AF N L + +
Sbjct: 184 TKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAF 243
Query: 970 NLQT---PLRRCFWKGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSK------ 1020
+L P + F + LW+ LV++ +
Sbjct: 244 SLIVFALP----------------LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTN 287
Query: 1021 -TIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRS---VFDLLDRKTEIEPDDPDATPVP 1076
+++ LM+ N L RA S V ++L+ K IE + D
Sbjct: 288 YLMQIMFSLMMIGN----ILNFIV------RASASAKRVLEVLNEKPAIE--EADNALAL 335
Query: 1077 DRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYE 1136
+ G V ++V+F Y P+ ++ + G +A++G +G GKS+++ L+ R +
Sbjct: 336 PNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394
Query: 1137 PSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAAR 1196
P GRV +D D+R LK LR H++ VPQE LF+ TI EN+ +G E AT+ EI+EAA+
Sbjct: 395 PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAK 454
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
+A FI SLP+GY + V G SGGQKQR++IARA V+K ++++LD+ TS++D +
Sbjct: 455 IAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514
Query: 1257 ERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNP 1311
E+ + + L R G TT ++ ++ T A I V+ +GKVA G+H LL++
Sbjct: 515 EKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK 569
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 7e-61
Identities = 62/271 (22%), Positives = 116/271 (42%), Gaps = 5/271 (1%)
Query: 1080 RGEVELKHVDFSYPSRPDIP-IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPS 1138
G++ +K + Y I ++S G+ + L+G +G GKS++++ R
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 1139 SGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLA 1198
G + IDG L+ R+ ++PQ+ +F+ T +N+ + + ++ EI + A
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
I P + + G LS G KQ + +AR+ + KA+I+LLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318
++ L +A + T I+ R+ + VI++ KV + S L D A
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 1319 IQLQRFTHSQVIGMTSGSSSSARPKDDEERE 1349
I + V + R+
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQ 283
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 2e-58
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 13/286 (4%)
Query: 426 GLIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
G + +K + Y IL N S ++ G+ + L+G +GSGKST++S R +
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-E 74
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENI--LLGRPDADLNEIEEAARV 542
G++ +DG S+ L R+ G++ Q+ +F+ T ++N+ D EI + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ---EIWKVADE 131
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
S I + P D + + G LS G KQ + +AR++L ILLLDE ++ LD +
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 603 KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662
++++ L + T ++ R+ + + D V+++ V + + EL + A
Sbjct: 192 QIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAG 251
Query: 663 LI----RMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYG 704
I TA + P R V P+ +R+ G
Sbjct: 252 FIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 8e-52
Identities = 62/243 (25%), Positives = 118/243 (48%), Gaps = 22/243 (9%)
Query: 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSS 1139
EV +++V + P+ +D++ + G+ LA+ G +G GK+S++ ++ EPS
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1140 GRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATE--SEIIEAARL 1197
G++ G+ ++ Q + TI ENI +G +I+A +L
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
D IS + +GE G+ LSGGQ+ R+++ARA + A++ LLD LD +E
Sbjct: 110 -EED--ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1258 RSV-QEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 1316
+ + + + + + KT I+V ++ ++ A I ++ +G G+ S L PD ++
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD--FS 224
Query: 1317 RMI 1319
+
Sbjct: 225 SKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 5e-46
Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 18/241 (7%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+ + +++V + +L + + + G+ +A+ GS+G+GK++++ +I +P+
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVAN 544
G++ G +I SQ + TIKENI+ G D +
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQ 108
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK- 603
I K + + + E G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK
Sbjct: 109 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 604 LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+ + + + M +T +++ ++ ++KAD + +L +GS GT EL ++
Sbjct: 169 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ--PDFSSK 226
Query: 664 I 664
+
Sbjct: 227 L 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 5e-49
Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 24/245 (9%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+ +++ F++ +R D P ++ G +A+VG GCGKSS+++ + + G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATE--SEIIEAARLA 1198
V I G +A VPQ+ + ++ ENI +G + +I+A L
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL- 106
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
D + LP G +T +GE+GV LSGGQKQRV++ARA A+I L D+ SA+DA +
Sbjct: 107 LPD--LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1259 SV-QEALDR--ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315
+ + + KT I+V H +S + VI V+ GK++E+GS+ LL + +
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA--F 222
Query: 1316 ARMIQ 1320
A ++
Sbjct: 223 AEFLR 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 4e-44
Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 40/253 (15%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
I +++ F++ +R + LN + ++P G +A+VG G GKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANA 545
V + G + V Q+ + +++ENIL G E
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ-------LEEPY---- 96
Query: 546 YSFIIK----------LPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
Y +I+ LP G T++ E+GV LSGGQKQR+++ARA+ N I L D+ S
Sbjct: 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156
Query: 596 ALDSE-SEKLVQEALDR--FMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELI 652
A+D+ + + + + + +T +++ H +S + + DV+ V+ G +SE+G++ EL+
Sbjct: 157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELL 216
Query: 653 AKGENGVYAKLIR 665
A+ G +A+ +R
Sbjct: 217 ARD--GAFAEFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-48
Identities = 66/301 (21%), Positives = 125/301 (41%), Gaps = 25/301 (8%)
Query: 1053 RSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGK 1112
+ E+ G+ + FS S P+ +D++ + G+
Sbjct: 9 NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDS---LSFSNFSLLGTPVLKDINFKIERGQ 65
Query: 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFA 1172
LA+ G +G GK+S++ ++ EPS G++ G+ ++ Q +
Sbjct: 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMP 112
Query: 1173 STIYENIAYGHESATE--SEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230
TI ENI G +I+A +L D IS + +GE G+ LSGGQ+ R+
Sbjct: 113 GTIKENI-IGVSYDEYRYRSVIKACQL-EED--ISKFAEKDNIVLGEGGITLSGGQRARI 168
Query: 1231 AIARAFVRKAEIMLLDEATSALDAESERSV-QEALDRACSGKTTIVVAHRLSTIRNAHVI 1289
++ARA + A++ LLD LD +E+ + + + + + KT I+V ++ ++ A I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 1290 AVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKDDEERE 1349
++ +G G+ S L PD ++ + + + + E +
Sbjct: 229 LILHEGSSYFYGTFSELQNLRPD--FSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGD 286
Query: 1350 A 1350
A
Sbjct: 287 A 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-44
Identities = 65/298 (21%), Positives = 130/298 (43%), Gaps = 39/298 (13%)
Query: 408 KPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGS 467
+ + ++ ++ + FS S +L + + + G+ +A+ GS+G+
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGA 75
Query: 468 GKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG 527
GK++++ +I +P+ G++ G +I SQ + TIKENI+ G
Sbjct: 76 GKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-G 121
Query: 528 RPDADLNEIEEAARVANAYSFIIK----------LPDGFDTQVRERGVQLSGGQKQRIAI 577
+ R Y +IK + + + E G+ LSGGQ+ RI++
Sbjct: 122 VS-------YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 578 ARAMLKNPAILLLDEATSALDSESEK-LVQEALDRFMIGRTTLVIAHRLSTIRKADVVAV 636
ARA+ K+ + LLD LD +EK + + + + M +T +++ ++ ++KAD + +
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 637 LQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSS 694
L +GS GT EL ++ + ++ + + R S + R S+
Sbjct: 231 LHEGSSYFYGTFSELQNLR--PDFSSKLMGCDSFDQFS-AERRNSILTETLHRFSLEG 285
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-45
Identities = 89/325 (27%), Positives = 149/325 (45%), Gaps = 51/325 (15%)
Query: 406 DHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSR-PEVRILNNFSLTVPAGKTIALVGS 464
H +S ++ D +I+L ++ + ++ LNN SL VPAG+ ++G+
Sbjct: 4 HHHHHHHHHSSGHIDDDDKH-MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGA 62
Query: 465 SGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWLRQQIGLVSQEPALFAT-TI 520
SG+GKST++ + PT G VL+DG ++ +L L R+QIG++ Q L ++ T+
Sbjct: 63 SGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
Query: 521 KENILLGRPDADLNEIEEAARV------------ANAYSFIIKLPDGFDTQVRERGVQLS 568
N+ L + + E RV ++Y P LS
Sbjct: 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY------PS-----------NLS 165
Query: 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEK----LVQEALDRFMIGRTTLVIAHR 624
GGQKQR+AIARA+ NP +LL D+ATSALD + + L+++ R G T L+I H
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL--GLTILLITHE 223
Query: 625 LSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSA 683
+ +++ D VAV+ G + E T E+ + + + K I+ R +
Sbjct: 224 MDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAE 283
Query: 684 RPSSAR---------NSVSSPIIAR 699
+ SV +P+++
Sbjct: 284 PFTDCVPMLRLEFTGQSVDAPLLSE 308
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-37
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 1083 VELKHVDFSYPSR-PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++L ++ + I ++SL AG+ ++G SG GKS++I V P+ G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1142 VMIDGKDIRKYN---LKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARL 1197
V++DG+++ + L RR + ++ Q L +S T++ N+A E +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP---KDEVK 141
Query: 1198 ANADKFISSLPDGYKTFVG--ERG----VQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
+ +S VG ++ LSGGQKQRVAIARA +++L D+ATSA
Sbjct: 142 RRVTELLS--------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 1252 LDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302
LD + RS+ E L G T +++ H + ++ +AVI +G++ E +
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+I+LK+V + + E L N +L V G+ + ++G +GSGK+T++ I P SG
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFA--TTIKENILLGR--PDADLNEIEEAAR 541
+ ++G +++ + R I + P + T+ + + L D + E +
Sbjct: 59 NIFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK 113
Query: 542 VANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
+KL + R + +LS GQ + + A+ P I+ LDE +D+
Sbjct: 114 -------ALKLGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 601 SEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGS-VSEIGTHDELIAK 654
++ + G+ +++ H L + + A G+ + + EL+
Sbjct: 163 RRHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 28/236 (11%)
Query: 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++LK+V + + + +++L G+ + ++GP+G GK++++ + P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS--TIYENIAYGHE--SATESEIIEAARL 1197
+ I+G ++RK +R ++ P + T+ + + E +E +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1198 ANADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
L + R + +LS GQ V + A + EI+ LDE +DA
Sbjct: 115 LK-------LGEEIL----RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1257 ERSVQEALDRACSGKTTIVVAHRLST-IRNAHVIAVI-DDGKVAELGSHSHLLKNN 1310
+ + GK I+V H L A ++ S S LL+++
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-43
Identities = 58/243 (23%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+++++ ++++Y L ++ + G+ A++G +G GKST+ P+SG+
Sbjct: 7 ILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR 64
Query: 487 VLLDGHDIKSLK--LRWLRQQIGLVSQEPA--LFATTIKENIL-----LGRPDADLNE-I 536
+L D I + + LR+ IG+V Q+P LF+ ++ +++ + P+ ++ + +
Sbjct: 65 ILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV 124
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
+ A + K LS GQK+R+AIA ++ P +L+LDE T+
Sbjct: 125 DNALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAG 173
Query: 597 LDSESEKLVQEALDRFM--IGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIA 653
LD + + L +G T ++ H + + D V V+++G V G E+ A
Sbjct: 174 LDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
Query: 654 KGE 656
+ E
Sbjct: 234 EKE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++++ ++++Y + +++ + G+ A++G +G GKS++ +PSSGR+
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1143 MIDGKDI--RKYNLKSLRRHMAIVPQEPC--LFASTIYENIAYG------HESATESEII 1192
+ D K I + + LR + IV Q+P LF++++Y+++++G E +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
A + + LS GQK+RVAIA V + ++++LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1253 DAESERSVQEALDR--ACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGS 1302
D + + L G T I+ H + + + V+ +G+V G+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-42
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 428 IELKHVDFSYPSRP--EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
IE+ +V + E + L N SL + G+ + + G++GSGKST++ ++ +PTSG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPA--LFATTIKENILLGRPDADLNEIEEAARVA 543
VL DG K +R+ IG+ Q P FA + + + + + + V
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118
Query: 544 NAYSFIIKLPDGFDTQ-VRERGV-QLSGGQKQRIAIAR--AMLKNPAILLLDEATSALDS 599
A F+ G D ++R LSGG+K+R+AIA P IL+LDE LD
Sbjct: 119 KAMEFV-----GLDFDSFKDRVPFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDR 171
Query: 600 ESEKLVQEALDRF-MIGRTTLVIAHRLSTI-RKADVVAVLQQGSVSEIGTHDELIAKGE 656
E + + ++++ +G+T ++I+H + T+ D V VL++G GT E + K +
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 21/230 (9%)
Query: 1083 VELKHVDFSYPSRP--DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
+E+ +V + + ++SL G+ L + G +G GKS+++ +V EP+SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPC--LFASTIYENIAYGHES-ATESEIIEAARL 1197
V+ DG+ +RR++ I Q P FA +++ +A+ ++ + + + +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP--LV 117
Query: 1198 ANADKFISSLPDGYK---TFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A +F+ D +K F LSGG+K+RVAIA V + +I++LDE LD
Sbjct: 118 KKAMEFVGLDFDSFKDRVPF------FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1255 ESERSVQEALDR-ACSGKTTIVVAHRLSTI-RNAHVIAVIDDGKVAELGS 1302
E + + +++ GKT I+++H + T+ + + V++ GK G+
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 5e-41
Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 33/247 (13%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
LI+L + + IL S + G L G +G+GK+T+++++ + TSG
Sbjct: 21 LIQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT 77
Query: 487 VLLDGHDIKSLK--LRWLRQQIGLVSQEPAL---FATTIKENILLGR----------PDA 531
V L G + +RQ IG VS + + ++ G D
Sbjct: 78 VNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE 137
Query: 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLD 591
NE + ++ + + LS G+KQR+ IARA++ P +L+LD
Sbjct: 138 IRNEAHQLLKLVGMSAKA-------QQYIG----YLSTGEKQRVMIARALMGQPQVLILD 186
Query: 592 EATSALDSESEKLVQEALDRFM---IGRTTLVIAHRLSTIRKA-DVVAVLQQGSVSEIGT 647
E + LD + + + LD + + H + I + +L+ G + G
Sbjct: 187 EPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
Query: 648 HDELIAK 654
++++
Sbjct: 247 VEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 5e-38
Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 17/236 (7%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L + + I + +S + G L G +G GK++++ ++ + +SG V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1143 MIDGKDIRK--YNLKSLRRHMAIVPQE---PCLFASTIYENIAYG-HESATESEIIEAAR 1196
+ GK K Y+ +++R+H+ V + + + G +S + I+
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
A + + + G + LS G+KQRV IARA + + ++++LDE + LD +
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 1257 ERSVQEALDRACS---GKTTIVVAHRLSTIRNA--HVIAVIDDGKVAELGSHSHLL 1307
S+ LD I V H + I + ++ DG+ + G+ +L
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI-LLLKDGQSIQQGAVEDIL 251
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-38
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 32/242 (13%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+I++ + S+ + +L ++ + G+ + ++G SGSGKST + + D G+
Sbjct: 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80
Query: 487 VLLDGHDI--KSLKLRWLRQQIGLVSQEPALFA-TTIKENILL------GRPDADLNEIE 537
+++DG ++ K L +R+++G+V Q LF T+ NI L P
Sbjct: 81 IIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE------ 134
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
+A A + L D + LSGGQ QR+AIARA+ P I+L DE TSAL
Sbjct: 135 KAEAKAMELLDKVGLKD----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 598 DSESEKLVQEALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
D E +V E L M G T +V+ H + R+ D V + G + E G ++L
Sbjct: 191 DPE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Query: 652 IA 653
Sbjct: 247 FD 248
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 72/265 (27%), Positives = 113/265 (42%), Gaps = 42/265 (15%)
Query: 1066 EPDDPDATPVPDRLRGE--VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCG 1123
+ VP +++ + S+ + + + +++ R G+ + ++GPSG G
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSG 62
Query: 1124 KSSVIALVQRFYEPSSGRVMIDGKDI--RKYNLKSLRRHMAIVPQEPCLFA-STIYENIA 1180
KS+ + + + G ++IDG ++ + NL +R + +V Q LF T+ NI
Sbjct: 63 KSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122
Query: 1181 YG--------HESATES--EIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQR 1229
E A E+++ L + A + PD LSGGQ QR
Sbjct: 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY----PD-----------SLSGGQAQR 167
Query: 1230 VAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR----ACSGKTTIVVAHRLSTIRN 1285
VAIARA + +IML DE TSALD E V E L A G T +VV H + R
Sbjct: 168 VAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFARE 224
Query: 1286 -AHVIAVIDDGKVAELGSHSHLLKN 1309
+ +D G + E G L
Sbjct: 225 VGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 5e-37
Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 42/253 (16%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+ + + Y +L SL AG I+++GSSGSGKST + I P+ G
Sbjct: 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 487 VLLDGHDIKSLK-------------LRWLRQQIGLVSQEPALFA-TTIKENI------LL 526
++++G +I ++ LR LR ++ +V Q L++ T+ EN+ +L
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 122
Query: 527 GRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586
G +A A Y + + + + V LSGGQ+QR++IARA+ P
Sbjct: 123 GLSKH------DARERALKYLAKVGIDERAQGKYP---VHLSGGQQQRVSIARALAMEPD 173
Query: 587 ILLLDEATSALDSESEKLVQEALDRFMI-----GRTTLVIAHRLSTIRK-ADVVAVLQQG 640
+LL DE TSALD E LV E L M G+T +V+ H + R + V L QG
Sbjct: 174 VLLFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 641 SVSEIGTHDELIA 653
+ E G +++
Sbjct: 230 KIEEEGDPEQVFG 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-32
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 41/235 (17%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR----------- 1150
+ +SL+ARAG ++++G SG GKS+ + + +PS G ++++G++I
Sbjct: 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82
Query: 1151 --KYNLKSLRRHMAIVPQEPCLFA-STIYENIAYG---HESATESEIIEAAR--LAN--- 1199
K L+ LR + +V Q L++ T+ EN+ ++ + E A LA
Sbjct: 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI 142
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
++ P LSGGQ+QRV+IARA + +++L DE TSALD E
Sbjct: 143 DERAQGKYPV-----------HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---L 188
Query: 1260 VQEAL----DRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
V E L A GKT +VV H + R+ + + + GK+ E G + N
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 9e-37
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLR 1158
LS RAG+ L LVGP+G GKS+++A + G + G+ + ++ L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLA 72
Query: 1159 RHMAIVPQEPCL-FASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGE 1217
H A + Q+ FA+ ++ + T +E++ +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV-AGALA--LDDKLG-------- 121
Query: 1218 RGV-QLSGGQKQRVAIARAFV-------RKAEIMLLDEATSALDAESERSVQEALDR-AC 1268
R QLSGG+ QRV +A + +++LLDE ++LD + ++ + L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 1269 SGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGS 1302
G ++ +H L+ T+R+AH ++ GK+ G
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-35
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 32/240 (13%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
S +++L+ V E L S V AG+ + LVG +G+GKST+++ +
Sbjct: 2 SIVMQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK 53
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGR-PDADLNEIEEAARV 542
G + G +++ L +SQ+ FAT + + L + + + A
Sbjct: 54 GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA 113
Query: 543 ANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAML-------KNPAILLLDEAT 594
R QLSGG+ QR+ +A +L +LLLDE
Sbjct: 114 LALDDK------------LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161
Query: 595 SALDSESEKLVQEALDRF-MIGRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELI 652
++LD + + + L G ++ +H L+ T+R A +L+ G + G +E++
Sbjct: 162 NSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
++ L+GP+G GKS + L+ +P G V ++G DI L RR +
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIG 73
Query: 1163 IVPQEPCLFAS-TIYENIAYGHESATESEI----IEAARLANADKFISSLPDGYKTFVGE 1217
VPQ+ LF ++Y NIAYG + E E A + P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 1218 RGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIV 1275
+LSGG++QRVA+ARA V + ++LLDE SA+D +++ + E L +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 1276 VAHRLS---TIRNAHVIAVIDDGKVAELGS 1302
V H L + A +AV+ +G++ E G
Sbjct: 183 VTHDLIEAAML--ADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 442 EVRILNNF-----SLTVPAGKT-IALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK 495
+VR ++ G+ L+G +G+GKS + LI P G+V L+G DI
Sbjct: 4 KVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63
Query: 496 SLKLRWLRQQIGLVSQEPALFA-TTIKENI---LLGRPDADLNE-IEEAARVANAYSFII 550
L R+ IG V Q+ ALF ++ NI L + + + E A +
Sbjct: 64 PLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD 121
Query: 551 KLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALD 610
+ P +LSGG++QR+A+ARA++ P +LLLDE SA+D +++ ++ E L
Sbjct: 122 RKPA-----------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Query: 611 RF--MIGRTTLVIAHRLS---TIRKADVVAVLQQGSVSEIGTHDEL 651
L + H L + AD VAV+ G + E G EL
Sbjct: 171 FVQREFDVPILHVTHDLIEAAML--ADEVAVMLNGRIVEKGKLKEL 214
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 2e-36
Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 30/249 (12%)
Query: 405 IDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGS 464
+ R +++ +L + S + +LN + + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 465 SGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKE 522
+G+GK+T++ L+ P GQ + L + Q+I LF I+
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDIPK------LNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 523 NILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582
L + D+ + +++ D D +V+ LSGG+ QR+AI A+
Sbjct: 441 QFLNPQFQTDVVKP-------------LRIDDIIDQEVQH----LSGGELQRVAIVLALG 483
Query: 583 KNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQ 639
I L+DE ++ LDSE + + + RF+ +T ++ H AD V V +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
Query: 640 GSVSEIGTH 648
Sbjct: 544 IPSKNAHAR 552
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 32/254 (12%)
Query: 1057 DLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLAL 1116
+L R ++ DAT + + + L +
Sbjct: 326 NLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVM 383
Query: 1117 VGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP--CLFAST 1174
+G +G GK+++I L+ +P G +DI K N+ + +A LF
Sbjct: 384 MGENGTGKTTLIKLLAGALKPDEG------QDIPKLNVSMKPQKIAPKFPGTVRQLFFKK 437
Query: 1175 IYENIAYGHESATESEIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233
I ++++++ R+ + D+ + L SGG+ QRVAI
Sbjct: 438 IRGQF---LNPQFQTDVVKPLRIDDIIDQEVQHL---------------SGGELQRVAIV 479
Query: 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACSGKTTIVVAHRLSTIRN-AHVIA 1290
A A+I L+DE ++ LD+E + + R + KT +V H A +
Sbjct: 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 1291 VIDDGKVAELGSHS 1304
V + + +
Sbjct: 540 VFEGIPSKNAHARA 553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-31
Identities = 54/316 (17%), Positives = 109/316 (34%), Gaps = 33/316 (10%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI--------ERF 479
HV Y + + T G+ + LVG++G GKST + ++ RF
Sbjct: 78 NLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 480 YDPTSGQVLL---DGHDIKSLKLRWLRQQIGLVSQEP--ALFATTIKENILLGRPDADLN 534
DP Q ++ G ++++ + L I + + IK + L
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEA 593
+ V IK+ V +R + +LSGG+ QR AI + ++ + + DE
Sbjct: 195 MEKSPEDVKRY----IKILQL--ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEP 248
Query: 594 TSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSE-IGTHDE 650
+S LD + + + + + + + H LS + +D V ++ + T
Sbjct: 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPA 308
Query: 651 LIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSR 710
+ +G N + R + + A + + + ++ +
Sbjct: 309 SVREGIN-------IFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK 361
Query: 711 RLSDFSTSDFSLSLDA 726
DF +
Sbjct: 362 TQGDFVLNVEEGEFSD 377
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 35/239 (14%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
HV Y + + R + R G+ L LVG +G GKS+ + ++ +P+ GR
Sbjct: 77 TNLEAHVTHRYSAN-SFKLHRLPTPRP--GQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1142 V-----------MIDGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATE 1188
G +++ Y K L + + + I + E
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 1189 S------EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
++ ++ + + + +LSGG+ QR AI + V++A++
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADV 242
Query: 1243 MLLDEATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
+ DE +S LD + + + + + K I V H LS + + + +I
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-34
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 29/236 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
IE V+ YP R + S + G+ + L+G SGSGK+T++ LI PT G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLG----RPDADLNEIEEAARV 542
+ G + L + ++ +GLV Q ALF T+ +N+ G R D E++ RV
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD--EMDA--RV 126
Query: 543 ANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
++L + + R +LSGGQ+QR+A+ARA+ P +LL DE +A+D++
Sbjct: 127 RELLR-FMRL-ESY----ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 602 EKLVQEALDRF--MIGRTTLVIAH----RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ ++ + + +G T++ + H L AD V VL +G+V + GT +E+
Sbjct: 181 RRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 6e-34
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 41/238 (17%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E V+ YP R +S + R G+ + L+GPSG GK++++ L+ P+ G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG------HESATESEIIEAA 1195
I GK + +L +R++ +V Q LF T+Y+N+++G + ++ + E
Sbjct: 73 WIGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1196 RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA- 1254
R + + + P +LSGGQ+QRVA+ARA + +++L DE +A+D
Sbjct: 131 RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 1255 -----ESE-RSVQEALDRACSGKTTIVVAH----RLSTIRNAHVIAVIDDGKVAELGS 1302
+ R V + + G T++ V H L A + V+ +G V + G+
Sbjct: 180 IRRELRTFVRQVHDEM-----GVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGT 229
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 51/231 (22%), Positives = 100/231 (43%), Gaps = 40/231 (17%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ ++++ F Y + +F+ L+ G LA++G +GCGKS+++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEP-CLFASTIYENIAYG---H------ESATESEII 1192
+ + + VPQ FA ++ + + G H + + ++
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
A L + ++ L R LSGGQ+Q + IARA + +++LLDE TSA
Sbjct: 110 MQA-LDYLN--LTHLAK--------REFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1252 LDAESERSVQEALDRAC--SGKTTIVVAHRLST-IRNAHVIAVIDDGKVAE 1299
LD ++ V L T + H+ + + A+ +++
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 43/240 (17%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ ++++ F Y + + + + G +A++G +G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEP-ALFATTIKENILLGR-P---------DADLNEI 536
+ Q IG V Q + FA ++ + +L+GR D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+A N +R LSGGQ+Q I IARA+ ++LLDE TS
Sbjct: 110 MQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 596 ALDSESEKLVQEALDRFMI--GRTTLVIAHRLST-IRKADVVAVLQQGSVSEIGTHDELI 652
ALD ++ +V L T + H+ + + A+ +L + + G ++
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 46/242 (19%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ + H+ S+ + P+ D+SL G+ L ++G SGCGK++++ + F +P SG +
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1143 MIDGKDI--RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG--HESATESEIIEAARL 1197
+ GK I + NL R + + QE LF T+Y NIAYG + ++ R+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE--RQRI 119
Query: 1198 ANA------DKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
+ P +LSGGQ+QR A+ARA E++LLDE SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 1252 LDAE------SE-RSVQEALDRACSGKTTIVVAH----RLSTIRNAHVIAVIDDGKVAEL 1300
LD + + + A GK+ + V+H L A IAV+ G++ +
Sbjct: 169 LDEQLRRQIREDMIAALRAN-----GKSAVFVSHDREEALQY---ADRIAVMKQGRILQT 220
Query: 1301 GS 1302
S
Sbjct: 221 AS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+ + + H+ S+ + +LN+ SL++ G+ + ++G+SG GK+T++ + F P S
Sbjct: 2 TAALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS 58
Query: 485 GQVLLDGHDIKSLKLRWL---RQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAA 540
G++ L G I K L +++G + QE LF T+ NI G + +E
Sbjct: 59 GEISLSGKTI-FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ 117
Query: 541 RVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
R+ + + + + R +LSGGQ+QR A+ARA+ +P ++LLDE SALD
Sbjct: 118 RIEAMLE-LTGISE-----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDE 171
Query: 600 E------SE-KLVQEALDRFMIGRTTLVIAH----RLSTIRKADVVAVLQQGSVSEIGTH 648
+ + A G++ + ++H L AD +AV++QG + + +
Sbjct: 172 QLRRQIREDMIAALRAN-----GKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASP 223
Query: 649 DEL 651
EL
Sbjct: 224 HEL 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 427 LIELKHVDFSYPS-RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI---ERFYDP 482
+++LK+V +Y + L N +L + G+ ++++G SGSGKST++++I ++ P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---P 57
Query: 483 TSGQVLLDGHDIKSL---KLRWLR-QQIGLVSQEPALFA-TTIKENI---LLGRPDADLN 534
T G+V +D L +L +R +IG V Q+ L T EN+ L+ + ++
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
E R + +L + F + QLSGGQ+QR+AIARA+ NP I+L D+ T
Sbjct: 118 GEERRKRALECLK-MAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 595 SALDSESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEI 645
ALDS++ + + + L + G+T +V+ H ++ R + + L+ G V
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 39/240 (16%)
Query: 1083 VELKHVDFSYPS-RPDIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPS 1138
V+LK+V +Y I ++++L + G+ ++++GPSG GKS+ +I + + P+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1139 SGRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFAS-TIYENIA----YGHESATES 1189
G V ID + L R + V Q+ L T EN+ + + A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 1190 EIIEAARLAN--------ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241
E E + A ++F + P+ QLSGGQ+QRVAIARA
Sbjct: 119 E--ERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPP 165
Query: 1242 IMLLDEATSALDAESERSVQEALDR--ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299
I+L D+ T ALD+++ + + L + GKT +VV H ++ R I + DG+V
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-33
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 44/237 (18%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ + + +LSL+ +G+ ++GP+G GK+ + L+ F+ P SGR+
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE---SATESEIIEAARLA 1198
++DGKD+ +L + +A V Q LF + +N+ +G +++ AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA---- 1254
+ + P LSGG++QRVA+ARA V +I+LLDE SALD
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1255 --ESE-RSVQEALDRACSGKTTIVVAH------RLSTIRNAHVIAVIDDGKVAELGS 1302
+ + T + + H ++ R IAV+ DGK+ ++G
Sbjct: 165 NAREMLSVLHKKN-----KLTVLHITHDQTEARIMAD-R----IAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-31
Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 38/239 (15%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE++ + + + L+N SL V +G+ ++G +G+GK+ + LI F+ P SG+
Sbjct: 1 MIEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 487 VLLDGHDIKSL--KLRWLRQQIGLVSQEPALFA-TTIKENILLG-RPDADLNEIEEAARV 542
+LLDG D+ L + I V Q +LF +K+N+ G R + +I++ RV
Sbjct: 57 ILLDGKDVTDLSPEKH----DIAFVYQNYSLFPHMNVKKNLEFGMR----MKKIKDPKRV 108
Query: 543 ANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+ +K+ + +R LSGG++QR+A+ARA++ NP ILLLDE SALD
Sbjct: 109 LDTAR-DLKIEH-----LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP-- 160
Query: 602 EKL---VQEALDRF--MIGRTTLVIAH----RLSTIRKADVVAVLQQGSVSEIGTHDEL 651
+ +E L T L I H AD +AV+ G + ++G +E+
Sbjct: 161 -RTQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEI 215
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-33
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 23/222 (10%)
Query: 440 RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKL 499
+ L + G+ I ++G +G GK+T ++ G V + +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 500 RWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQ 559
R G V Q K+ + EE + + L ++
Sbjct: 338 RIFPNYDGTVQQ---YLENASKDAL-----STSSWFFEEVTKR-------LNLHRLLESN 382
Query: 560 VRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRT 617
V + LSGG+ Q++ IA + K + +LD+ +S LD E +V +A+ R
Sbjct: 383 VND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 618 TLVIAHRLSTIRK-ADVVAVLQ-QGSVSEIGTHDELIAKGEN 657
T +I H LS AD + V + + + + T + G N
Sbjct: 439 TFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMN 480
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-28
Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 30/257 (11%)
Query: 1061 RKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPS 1120
R EI+ + + + + ++K + + A+ G+ + ++GP+
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK--KLGDFQLVVDNGEAKEGEIIGILGPN 303
Query: 1121 GCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC--LFASTIYEN 1178
G GK++ ++ G V + + + + + + +
Sbjct: 304 GIGKTTFARILVGEITADEGSVTPEKQILSYK-----PQRIFPNYDGTVQQYLENASKDA 358
Query: 1179 IAYGHESATESEIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237
++ E + + L + ++ L SGG+ Q++ IA
Sbjct: 359 LSTSSWFFEE--VTKRLNLHRLLESNVNDL---------------SGGELQKLYIAATLA 401
Query: 1238 RKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDD 1294
++A++ +LD+ +S LD E V +A+ R T ++ H LS A I V
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461
Query: 1295 GKVAELGSHSHLLKNNP 1311
+ S +
Sbjct: 462 EPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-28
Identities = 52/308 (16%), Positives = 105/308 (34%), Gaps = 33/308 (10%)
Query: 431 KHVDFSYPSRPEVRILNNFSLTVP-AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489
V Y +V F L P + ++G +G GK+TV+ ++ P G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 490 DGHDIKSLKLRWLR-QQIGLVSQEPA---------LFATTIKENILLGRPDADLNEIEEA 539
+ K L+ R ++I +E + L G + L +I+E
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
+ + +L + T + + LSGG QR+ +A ++L+ + + D+ +S LD
Sbjct: 117 GKKDE----VKELLN--MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 599 SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK-GE 656
+ +A+ + + +V+ H L + D++ ++ S A+ G
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGI 230
Query: 657 NGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFS 716
N + R + S + + ++L DF
Sbjct: 231 NNFLKGYL-------PAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQ 283
Query: 717 TSDFSLSL 724
+
Sbjct: 284 LVVDNGEA 291
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-26
Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 17/223 (7%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRA-RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
V Y + F+ L + L ++G +G GK++V+ ++ P+ G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 1145 DGKDIRKYNLKSLRRH-MAIVPQEP---CLFASTIYENIAYGHESA--TESEIIEAARLA 1198
+ K + LK R + +E L + + Y + T +EI+
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1199 NADKFISSLPDGYKTFVGERGV-QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
+ L + T + + LSGG QR+ +A + +R+A++ + D+ +S LD
Sbjct: 117 GKKDEVKELLN--MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 1258 RSVQEALDRACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
++ +A+ K IVV H L + +I +I
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 59/254 (23%), Positives = 116/254 (45%), Gaps = 28/254 (11%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ +K + + IL S + G+ L+G +G+GK+T + +I P+SG V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEEAA 540
+ G ++ + +R+ I + +E + E + +++ E +E A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 541 RVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE 600
I L + +V S G +++ IARA++ NP + +LDE TS LD
Sbjct: 132 E-------IAGLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 601 SEKLVQEALDRFMI-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658
+ + V++ L + G T LV +H + + D +A++ G++ E GT +EL + +
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 240
Query: 659 ----VYAKLIRMQE 668
V+ ++++ E
Sbjct: 241 NIEEVFEEVVKCSE 254
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 1102 RDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161
+ +S G+ L+GP+G GK++ + ++ +PSSG V + GK++ + +R+ +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90
Query: 1162 AIVPQEPCLFAS-TIYENIA-----YG-HESATESEIIEAARLANADKFISSLPDGYKTF 1214
+ +P+E + + E + Y S E + A +A L + K
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG-------LGEKIKDR 143
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTI 1274
V S G +++ IARA + + +LDE TS LD + R V++ L +A TI
Sbjct: 144 VST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 1275 VV-AHRLSTI-RNAHVIAVIDDGKVAELGSHSHL 1306
+V +H + + IA+I +G + E G+ L
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 32/263 (12%)
Query: 388 ISAFAKAKVAAAKIFRIIDHKPSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILN 447
I+ F + + + R ++ + E L+ + Y S L
Sbjct: 251 INEFLRGYLKDENV-RFRPYEIKFTKTGER--VEIERETLVTYPRLVKDYGSF----RLE 303
Query: 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507
+ G+ I +VG +G GK+T V ++ +PT G++ D + K Q I
Sbjct: 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT--VAYK----PQYIK 357
Query: 508 LVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQL 567
+ T+ E + D +++ + + D +D +V E L
Sbjct: 358 ADYEG------TVYELLS----KIDASKLNSNFYKTELLK-PLGIIDLYDREVNE----L 402
Query: 568 SGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRL 625
SGG+ QR+AIA +L++ I LLDE ++ LD E V A+ M +T LV+ H +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462
Query: 626 STIRK-ADVVAVLQQGSVSEIGT 647
I +D + V +G + G
Sbjct: 463 LMIDYVSDRLMVF-EGEPGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-29
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 29/242 (11%)
Query: 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGK 1124
P + T +R+ E E + G+ + +VGP+G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 1125 SSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHE 1184
++ + ++ EP+ G++ D K +++ + T+YE ++
Sbjct: 326 TTFVKMLAGVEEPTEGKIEWDLTVAYK------PQYIKADYEG------TVYELLSKIDA 373
Query: 1185 SATESE--IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEI 1242
S S E + + +LSGG+ QRVAIA +R A+I
Sbjct: 374 SKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDADI 422
Query: 1243 MLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
LLDE ++ LD E +V A+ + KT +VV H + I + + V +G+ +
Sbjct: 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGK 481
Query: 1300 LG 1301
G
Sbjct: 482 YG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-28
Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 56/326 (17%)
Query: 423 SVSGLIEL-KHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS-----LI 476
S + +L + Y + V G + +VG +G+GKST V LI
Sbjct: 16 PRSHMEQLEEDCVHRYG---VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 477 ERFYD-PTSGQVLLDGHDIKSLKLRWLR---QQIGLVSQEPALFATTI------KENILL 526
S ++ L+ + + +I V + + I K LL
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVKGKVIELL 130
Query: 527 GRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586
+ D ++EE + ++L + + +++ LSGG+ QR+AIA A+L+N
Sbjct: 131 KKADE-TGKLEEVVK-------ALELENVLEREIQ----HLSGGELQRVAIAAALLRNAT 178
Query: 587 ILLLDEATSALDSES----EKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQ-QG 640
DE +S LD + ++ + G++ LV+ H L+ + +D++ V+ +
Sbjct: 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEE---GKSVLVVEHDLAVLDYLSDIIHVVYGEP 235
Query: 641 SVSEIGTHDELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSP--IIA 698
V I + + G N ++ RP + + + I
Sbjct: 236 GVYGIFSQPKGTRNGINEFLRGYLK------------DENVRFRPYEIKFTKTGERVEIE 283
Query: 699 RNSSYGRSPYSRRLSDFSTSDFSLSL 724
R + + F +
Sbjct: 284 RETLVTYPRLVKDYGSFRLEVEPGEI 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-25
Identities = 49/229 (21%), Positives = 84/229 (36%), Gaps = 30/229 (13%)
Query: 1086 KHVDFSYPSRPDIPIFRD-LSLRARAGKTLALVGPSGCGKSSVI-----ALVQRFYE-PS 1138
+ Y F + G + +VGP+G GKS+ + L+
Sbjct: 25 EDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80
Query: 1139 SGRVMI---DGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATE-SEII 1192
S +I G +++ Y K + V + L + + + A E ++
Sbjct: 81 SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE 140
Query: 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL 1252
E + + + LSGG+ QRVAIA A +R A DE +S L
Sbjct: 141 EVVKALELENVLEREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 1253 DAESERSVQEALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
D + A+ R + GK+ +VV H L+ + + +I V+
Sbjct: 190 DIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-32
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
L+E + Y S L + G+ I +VG +G GK+T V ++ +PT G+
Sbjct: 357 LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
V D + K Q I + T+ E + D +++
Sbjct: 413 VEWDLT--VAYK----PQYIKAEYEG------TVYELLS----KIDSSKLNSNFYKTELL 456
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+ + D +D V + LSGG+ QR+AIA +L++ I LLDE ++ LD E V
Sbjct: 457 KPL-GIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 607 EALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647
A+ M +T LV+ H + I +D + V +G G
Sbjct: 512 RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-30
Identities = 59/313 (18%), Positives = 109/313 (34%), Gaps = 47/313 (15%)
Query: 431 KHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVS-----LIERFYD-PTS 484
+ Y + V G + +VG +G+GK+T V LI + S
Sbjct: 95 EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 485 GQVLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGRPDADLNEIEEAARVA 543
++ L+ + R + G + + + + + G+ L +++E +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPK-AVKGKVRELLKKVDEVGKF- 209
Query: 544 NAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES-- 601
++L + D ++ QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 210 EEVVKELELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 602 --EKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658
++++ + G+ LV+ H L+ + +DV+ V+ GE G
Sbjct: 266 KVARVIRRLANE---GKAVLVVEHDLAVLDYLSDVIHVV----------------YGEPG 306
Query: 659 VY-----AKLIRMQEAAHETALNNARKSSARPSSARNSVSSP--IIARNSSYGRSPYSRR 711
VY K R RP R + S + R + +
Sbjct: 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKD 366
Query: 712 LSDFSTSDFSLSL 724
F +
Sbjct: 367 YGSFKLEVEPGEI 379
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 31/243 (12%)
Query: 1065 IEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGK 1124
P + T + +R+ E E R G+ + +VGP+G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 1125 SSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC--LFASTIYENIAYG 1182
++ + ++ EP+ G+V D K +++ + L + +
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYK------PQYIKAEYEGTVYELLSKIDSSKL--- 446
Query: 1183 HESATESEIIEAARLAN-ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241
+ + ++E+++ + + D+ + L SGG+ QRVAIA +R A+
Sbjct: 447 NSNFYKTELLKPLGIIDLYDRNVEDL---------------SGGELQRVAIAATLLRDAD 491
Query: 1242 IMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVA 1298
I LLDE ++ LD E +V A+ + KT +VV H + I + + V +G+
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 1299 ELG 1301
G
Sbjct: 551 RHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 28/228 (12%)
Query: 1086 KHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVI-----ALVQRFYE-PSS 1139
+ Y + G + +VGP+G GK++ + L+ E S
Sbjct: 95 EDCVHRYGVNA---FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 1140 GRVMI---DGKDIRKYNLKSLRRHMAIVPQEP--CLFASTIYENIAYGHESATE-SEIIE 1193
+I G +++ Y + + V + L + + + E + E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
+ + + QLSGG+ QRVAIA A +RKA DE +S LD
Sbjct: 212 VVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 1254 AESERSVQEALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAE 1299
V + R A GK +VV H L+ + + VI V+
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 14/226 (6%)
Query: 425 SGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTS 484
+ ++ +++ IL SL+V G+ ++++G+SGSGKST++ ++ PT
Sbjct: 2 AEILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 485 GQVLLDGHDIKSL---KLRWLR-QQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEA 539
G+V L+G ++ +L LR +++G V Q L T EN+++ P +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV--P-MLKMGKPKK 115
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+ +L G ++ + +LSGG++QR+AIARA+ P +L DE T LDS
Sbjct: 116 EAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 600 ESEKLVQEALDRF-MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSE 644
+ K V + + G + +++ H ++ G V
Sbjct: 174 ANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSS---VIALVQRFYEPSS 1139
+ +++ I + +SL + G+ ++++G SG GKS+ ++ L+ P+
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 1140 GRVMIDGKDIRKYNLKSL----RRHMAIVPQEPCLFAS-TIYENIA----YGHESATESE 1190
G+V ++GK++ N K L R + V Q L T EN+ + E
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE-- 116
Query: 1191 IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
+ +S L G + + +LSGG++QRVAIARA + ++ DE T
Sbjct: 117 -----AKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 1251 ALDAESERSVQEALDR-ACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAE 1299
LD+ + + V + + G + ++V H H + DGKV
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 39/241 (16%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ +K+V + + ++++ G+ ++GPSG GK++ + ++ PS+G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1142 VMIDGKDIRKYNLKSL---RRHMAIVPQEPCLFAS-TIYENIAYGHESA--TESEI---- 1191
+ D + + + R + +V Q L+ + T +ENIA+ + ++ EI
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E A++ + ++ P +LSG Q+QRVA+ARA V+ ++LLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1252 LDAE------SE-RSVQEALDRACSGKTTIVVAHRLS---TIRNAHVIAVIDDGKVAELG 1301
LDA + + VQ L G T +VV+H + I A + V+ GK+ ++G
Sbjct: 171 LDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVG 223
Query: 1302 S 1302
Sbjct: 224 K 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 67/245 (27%), Positives = 124/245 (50%), Gaps = 41/245 (16%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I +K+V + +V L+N ++ + G+ ++G SG+GK+T + +I P++G++
Sbjct: 4 IIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 488 LLDGHDIKSLKLRWL---RQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IE 537
D + S + ++IG+V Q AL+ T ENI + ++ + +E
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
E A+ I+ + + R +LSG Q+QR+A+ARA++K+P++LLLDE S L
Sbjct: 123 EVAK-------ILDIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 598 D--------SESEKLVQEALDRFMIGRTTLVIAHRLS---TIRKADVVAVLQQGSVSEIG 646
D + +++ +G T LV++H + I AD V VL +G + ++G
Sbjct: 172 DARMRDSARALVKEVQSR------LGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVG 223
Query: 647 THDEL 651
++L
Sbjct: 224 KPEDL 228
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-31
Identities = 45/223 (20%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E++ + Y + +L ++T+ G + G +G GK+T++ I + P G++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNEIEEAAR 541
+ +G I +K +I + +E + ++++ + L G NEI +A
Sbjct: 67 IYNGVPITKVK-----GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-NEIMDALE 120
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
+++ D ++++ +LS G +R+ +A +L N I +LD+ A+D +S
Sbjct: 121 -------SVEVLD-----LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 602 EKLVQEALDRFMIGRTTLVIAHRLST--IRKADVVAVLQQGSV 642
+ V +++ + + ++I S + DV L + S
Sbjct: 169 KHKVLKSILEILKEKGIVII---SSREELSYCDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 33/210 (15%), Positives = 80/210 (38%), Gaps = 43/210 (20%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
+++ G + GP+G GK++++ + + +P G ++ +G I K ++ +
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 81
Query: 1163 IVPQEPCLFAS-TIYENIA-----YGHESATE--SEIIEAARLANADKFISSLPDGYKTF 1214
+P+E + ++ + + YG + + +E+ + + K +
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG--------- 132
Query: 1215 VGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR-ACSGKTT 1273
+LS G +RV +A + AEI +LD+ A+D +S+ V +++
Sbjct: 133 ------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1274 IVVAHRLSTIRNAHV------IAVIDDGKV 1297
I+ + +
Sbjct: 187 IISSR--------EELSYCDVNENLHKYST 208
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-27
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 62/260 (23%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
E++L+++ + + +++L+ + G+ +AL+GPSG GKS+++ + Y+P+SG+
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATES--EI----IEA 1194
+ D KD+ L R++ +V Q L+ T+Y+NIA+ E EI E
Sbjct: 60 IYFDEKDVT--ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A++ + DK ++ P QLSGGQ+QRVAIARA V++ E++LLDE S LDA
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 1255 E------SE-RSVQEALDRACSGKTTIVVAH----------RLSTIRNAHVIAVIDDGKV 1297
+E + +Q+ L G TT+ V H R IAVI +G++
Sbjct: 167 LLRLEVRAELKRLQKEL-----GITTVYVTHDQAEALAMADR---------IAVIREGEI 212
Query: 1298 AELGSHSHLLKNNPDGCYAR 1317
++G+ PD Y +
Sbjct: 213 LQVGT--------PDEVYYK 224
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 81/247 (32%), Positives = 132/247 (53%), Gaps = 52/247 (21%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I+L+++ + + LNN +L + G+ +AL+G SGSGKST++ I Y PTSG++
Sbjct: 4 IKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 488 LLDGHDIKSL--KLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEE 538
D D+ L K R +GLV Q AL+ T+ +NI L P ++++ + E
Sbjct: 61 YFDEKDVTELPPKDR----NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVRE 116
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
A++ + + + P QLSGGQ+QR+AIARA++K P +LLLDE S LD
Sbjct: 117 VAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 599 --------SESEKLVQEALDRFMIGRTTLVIAH------RLSTIRKADVVAVLQQGSVSE 644
+E ++L +E +G TT+ + H + AD +AV+++G + +
Sbjct: 166 ALLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREGEILQ 214
Query: 645 IGTHDEL 651
+GT DE+
Sbjct: 215 VGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 54/245 (22%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
EV+L+++ + + L+L + G+ L L+GPSGCGK++ + ++ EP+ GR
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESA--TESEI----IEA 1194
+ +D+ L R++++V Q ++ T+YENIA+ + + EI A
Sbjct: 68 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A L ++ ++ P QLSGGQ+QRVA+ARA V + +++L+DE S LDA
Sbjct: 126 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 1255 E------SE-RSVQEALDRACSGKTTIVVAH----------RLSTIRNAHVIAVIDDGKV 1297
+ +E + +Q+ L TTI V H R IAV++ G++
Sbjct: 175 KLRVAMRAEIKKLQQKL-----KVTTIYVTHDQVEAMTMGDR---------IAVMNRGQL 220
Query: 1298 AELGS 1302
++GS
Sbjct: 221 LQIGS 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-20
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 52/247 (21%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L+++ + + +N +LT+ G+ + L+G SG GK+T + +I +PT G++
Sbjct: 12 VKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 488 LLDGHDIKSL--KLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEE 538
D+ L K R I +V Q A++ T+ ENI + P ++++ +
Sbjct: 69 YFGDRDVTYLPPKDR----NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRW 124
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
AA + + + P QLSGGQ+QR+A+ARA++ P +LL+DE S LD
Sbjct: 125 AAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 599 --------SESEKLVQEALDRFMIGRTTLVIAH------RLSTIRKADVVAVLQQGSVSE 644
+E +KL Q+ + TT+ + H + D +AV+ +G + +
Sbjct: 174 AKLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQ 222
Query: 645 IGTHDEL 651
IG+ E+
Sbjct: 223 IGSPTEV 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 54/245 (22%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ + ++ + + +S + G+ +AL+GPSGCGK++ + ++ Y+P+SG
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESA------TESEIIEA 1194
+ D + ++ R + +V Q L+ T++ENIA+ + E ++E
Sbjct: 60 IYFDDVLVN--DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
AR D + P QLSGGQ+QRVA+ARA V++ +++L DE S LDA
Sbjct: 118 ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 1255 E------SE-RSVQEALDRACSGKTTIVVAH----------RLSTIRNAHVIAVIDDGKV 1297
+E + +Q+ L G T++ V H R IAV + GK+
Sbjct: 167 NLRMIMRAEIKHLQQEL-----GITSVYVTHDQAEAMTMASR---------IAVFNQGKL 212
Query: 1298 AELGS 1302
+ G+
Sbjct: 213 VQYGT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-21
Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 52/247 (21%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I + ++ + V+ ++ S V G+ +AL+G SG GK+T + ++ Y PTSG++
Sbjct: 4 IRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 488 LLDGHDIKSL--KLRWLRQQIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-IEE 538
D + + K R ++G+V Q AL+ T+ ENI ++ + + E
Sbjct: 61 YFDDVLVNDIPPKYR----EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE 116
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
AR + + + D + QLSGGQ+QR+A+ARA++K P +LL DE S LD
Sbjct: 117 IAR-------KLLIDNLLDRKPT----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 599 --------SESEKLVQEALDRFMIGRTTLVIAH------RLSTIRKADVVAVLQQGSVSE 644
+E + L QE +G T++ + H + A +AV QG + +
Sbjct: 166 ANLRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQ 214
Query: 645 IGTHDEL 651
GT DE+
Sbjct: 215 YGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-25
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 56/249 (22%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
V L V + ++ R++SL + G+ + L+GPSGCGK++ + ++ EPS G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1142 VMIDGKDI----RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATES--EI--- 1191
+ I K + + + R +A+V Q L+ T+Y+NIA+ + EI
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1192 -IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
E A L + ++ P +LSGGQ+QRVA+ RA VRK ++ L+DE S
Sbjct: 120 VREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 1251 ALDAE------SE-RSVQEALDRACSGKTTIVVAH----------RLSTIRNAHVIAVID 1293
LDA+ +E + +Q L G TTI V H R IAV++
Sbjct: 169 NLDAKLRVRMRAELKKLQRQL-----GVTTIYVTHDQVEAMTMGDR---------IAVMN 214
Query: 1294 DGKVAELGS 1302
G + ++GS
Sbjct: 215 RGVLQQVGS 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-19
Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 50/249 (20%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ L V + V + SL V G+ + L+G SG GK+T + +I +P+ GQ+
Sbjct: 4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 488 LLDGHDIKSLKLRWLRQ----QIGLVSQEPALFAT-TIKENI-----LLGRPDADLNE-I 536
+ + + I +V Q AL+ T+ +NI L P ++++ +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 537 EEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSA 596
E A + + + P +LSGGQ+QR+A+ RA+++ P + L+DE S
Sbjct: 121 REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 597 LD--------SESEKLVQEALDRFMIGRTTLVIAH------RLSTIRKADVVAVLQQGSV 642
LD +E +KL ++ +G TT+ + H + D +AV+ +G +
Sbjct: 170 LDAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTM-----GDRIAVMNRGVL 218
Query: 643 SEIGTHDEL 651
++G+ DE+
Sbjct: 219 QQVGSPDEV 227
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 36/229 (15%)
Query: 446 LNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505
L+ S++V G ++G +GSGKST++++I F G+V + DI + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAE 78
Query: 506 I---GLVS--QEPALFAT-TIKENILLG---RPDADLNEI-------EEAARVANAYSFI 549
+ G+V Q P T+ EN+L+G ++ LN + +E V A+ +
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 550 IKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-DSESEKLVQEA 608
L + +LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 139 EFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-- 194
Query: 609 LDRFMI------GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
+ G T L+I HRL + D + V+ G + G +E
Sbjct: 195 ----HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 7e-17
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 25/230 (10%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-HM 1161
+S+ G ++GP+G GKS++I ++ F + GRV + KDI N + H
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELYHY 82
Query: 1162 AIVP--QEPCLFAS-TIYENIAYGHESATESEII----------EAARLANADKFISSLP 1208
IV Q P T+ EN+ G ES + E + A K + L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 1209 DGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC 1268
+ +LSGGQ + V I RA + +++++DE + + + +
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1269 -SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV-AELGS---HSHLLKNNPD 1312
G T +++ HRL + N + V+ +G++ AE G + ++P
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEEEIKNVLSDPK 249
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 40/245 (16%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++ + Y + + + L VP G+ + L+G++G+GK+T +S I G+
Sbjct: 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 487 VLLDGHDIKSLKLRWL-RQQIGLVSQEPALFAT-TIKENILLG---RPDADLNEIEEAAR 541
++ +G DI + + R I LV + +F T+ EN+++G R D +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRD 118
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQ----LSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
+ +S +L +ER Q LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 119 LEWIFSLFPRL--------KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 598 DSESEKLVQEALDRFMI------GRTTLVI---AHRLSTIRKADVVAVLQQGSVSEIGTH 648
+ LV E + +I G T L++ A ++ A VL+ G + G
Sbjct: 171 ---APILVSEVFE--VIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKA 223
Query: 649 DELIA 653
EL+
Sbjct: 224 SELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 78.6 bits (195), Expect = 4e-16
Identities = 57/247 (23%), Positives = 111/247 (44%), Gaps = 41/247 (16%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++ + Y I + + L+ G+ + L+G +G GK++ ++ + G+++
Sbjct: 8 EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1144 IDGKDIRKYNLKSL-RRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANAD 1201
+G+DI + R +A+VP+ +F T+YEN+ G A + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113
Query: 1202 KFISSLPDGYKTF--VGERGVQ----LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAE 1255
L + F + ER Q LSGG++Q +AI RA + + +++++DE + L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 1256 SERSVQE---ALDRACSGKTTIVVAHRLSTIRNAHV---IA----VIDDGKVAELGSHSH 1305
+ V E + + TTI++ +NA +A V++ G++ G S
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVE-----QNALGALKVAHYGYVLETGQIVLEGKASE 225
Query: 1306 LLKNNPD 1312
LL +N
Sbjct: 226 LL-DNEM 231
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-21
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 43/191 (22%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSV---IA-LVQRFYEP 1137
V+L++V ++ ++ + +D++L G+ + VGPSGCGKS++ IA L
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----ETI 55
Query: 1138 SSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-------TIYENIAYGHESA--TE 1188
+SG + I K + + R + +V F S ++ EN+++G + A +
Sbjct: 56 TSGDLFIGEKRMN--DTPPAERGVGMV------FQSYALYPHLSVAENMSFGLKLAGAKK 107
Query: 1189 SEI----IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIML 1244
I + A + + P LSGGQ+QRVAI R V + + L
Sbjct: 108 EVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFL 156
Query: 1245 LDEATSALDAE 1255
LDE S LDA
Sbjct: 157 LDEPLSNLDAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 8e-18
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 60/251 (23%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI---ERFYDPTS 484
++L++V ++ EV + + +L + G+ + VG SG GKST++ +I E TS
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TITS 57
Query: 485 GQVLLDGHDIKSL--KLRWLRQQIGLVSQEPALFA-TTIKENI-----LLGRPDADLNE- 535
G + + + R +G+V Q AL+ ++ EN+ L G +N+
Sbjct: 58 GDLFIGEKRMNDTPPAER----GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR 113
Query: 536 IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATS 595
+ + A +++L D + + LSGGQ+QR+AI R ++ P++ LLDE S
Sbjct: 114 VNQVAE-------VLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
Query: 596 ALD--------SESEKLVQEALDRFMIGRT-------TLVIAHRLSTIRKADVVAVLQQG 640
LD E +L + L R MI T TL AD + VL G
Sbjct: 163 NLDAALRVQMRIEISRLHKR-LGRTMIYVTHDQVEAMTL-----------ADKIVVLDAG 210
Query: 641 SVSEIGTHDEL 651
V+++G EL
Sbjct: 211 RVAQVGKPLEL 221
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-17
Identities = 45/264 (17%), Positives = 95/264 (35%), Gaps = 28/264 (10%)
Query: 360 HFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHKPSIDRNSESGL 419
+ A ++ P ++ F K A + +
Sbjct: 368 EYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFD 427
Query: 420 ELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERF 479
+ + + +Y ++ +LN L + + + G +G GKST++ I
Sbjct: 428 DEEDEGEDLCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGPNGCGKSTLMRAI--- 481
Query: 480 YDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEA 539
+ + + + ++ I + T++ + + ++ + E
Sbjct: 482 ----ANGQVDGFPTQEECRTVYVEHDI-----DGTHSDTSVLDFVF----ESGVGTKEAI 528
Query: 540 ARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDS 599
+ F + + LSGG K ++A+ARA+L+N ILLLDE T+ LD+
Sbjct: 529 KDKLIEFGF---TDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Query: 600 ESEKLVQEALDRFMIGRTTLVIAH 623
+ + L+ G T++ I+H
Sbjct: 582 VNVAWLVNYLNTC--GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 1e-12
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 48/240 (20%)
Query: 1050 RAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRAR 1109
++ L + + + P D +L + +FS + LR +
Sbjct: 401 HEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLA-YGAKILLNKTQLRLK 459
Query: 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAI--VPQE 1167
+ + GP+GCGKS+++ I + + + V +
Sbjct: 460 RARRYGICGPNGCGKSTLMR-------------AIANGQVDGF---PTQEECRTVYVEHD 503
Query: 1168 PCLFAS--TIYENIAYGHESATESEIIEAARLA-------NADKFISSLPDGYKTFVGER 1218
S ++ + + ES ++ +L IS+L
Sbjct: 504 IDGTHSDTSVLDFV---FESGVGTKEAIKDKLIEFGFTDEMIAMPISAL----------- 549
Query: 1219 GVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAH 1278
SGG K ++A+ARA +R A+I+LLDE T+ LD + + L+ G T+I ++H
Sbjct: 550 ----SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 4e-10
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 566 QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAH 623
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL F ++I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITH 956
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-09
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 1221 QLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRL 1280
LSGGQK ++ +A ++ +++LDE T+ LD +S ++ +AL I++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 1281 STIRN-AHVIAVIDDGKV 1297
+N + + DG++
Sbjct: 959 EFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 3e-07
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 1044 DFIKGGRAMRSVFDLLDRKTEIE-PDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFR 1102
+F+K A ++ +L + E + P+ V + + V++ +++F YP P
Sbjct: 632 EFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPG-TSKPQIT 690
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144
D++ + +A++GP+G GKS++I ++ P+SG V
Sbjct: 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 17/177 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++++ +++F YP + + + + IA++G +G+GKST+++++ PTSG+
Sbjct: 671 IVKVTNMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAY 546
V + + I + Q + + E+ + A
Sbjct: 730 VYT-HENCR----------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRAN 778
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEK 603
I + + G +RIA + K + + ++ K
Sbjct: 779 RQI-----NENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMK 830
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 83/529 (15%), Positives = 153/529 (28%), Gaps = 167/529 (31%)
Query: 439 SRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSL 497
SR + L L + K + + G GSGK+ V V L + ++
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-----------DVCLS-YKVQCK 179
Query: 498 ---KLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPD 554
K+ WL + + + LL + D + + + +
Sbjct: 180 MDFKIFWLN--LKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSS---------NIKL 225
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ--EALDRF 612
++ +R+ + +N +L+L VQ +A + F
Sbjct: 226 RIH-SIQAE--------LRRL-LKSKPYEN-CLLVLLN------------VQNAKAWNAF 262
Query: 613 MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIG--------THDELIAKGENGVYAKLI 664
+ L+ T R V L + + I T DE+ + K +
Sbjct: 263 NLSCKILL------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYL 311
Query: 665 RMQEAAHETALNNARKSSARPSSARNSVSSP----IIARNSSYGRS---PYSRRLSDFST 717
+ P ++P IIA + G + + D T
Sbjct: 312 DC-------------RPQDLPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 718 SDFSLSLDATYPS-YRH--EKLA-FKEQA-------SSFW------------------RL 748
+ SL+ P+ YR ++L+ F A S W L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 749 AKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAK-----YC 803
+ E ++ + N Y L + +YN + ++ Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLEN---EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 804 YLLIG--LSSAEL-----LFNTLQHSF-WDIVGENLTKRVREKMLA--------AVL--- 844
Y IG L + E LF + F + L +++R A L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRF------LEQKIRHDSTAWNASGSILNTLQQL 527
Query: 845 ---KNEIAWFDQEENESARIAARL----ALDANNVRSAIGDRIQVIVQN 886
K I D + + A L ++ N + S D +++ +
Sbjct: 528 KFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 2e-12
Identities = 49/328 (14%), Positives = 91/328 (27%), Gaps = 91/328 (27%)
Query: 1016 SDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATPV 1075
S T+R+F L+ + F++ +R + L + E P
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQ------KFVEE--VLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 1076 P-----DRLRGEVEL---KHVDFSYPSRPDIPI--FRDLSLRARAGKTLALVGPSGCGKS 1125
DRL + ++ +V SR P R L R K + + G G GK+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNV-----SRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 1126 SVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHES 1185
V V Y+ C I+ + + +
Sbjct: 165 WVALDVCLSYKVQ------------------------------CKMDFKIFW-LNLKNCN 193
Query: 1186 ATESEIIEAARL-ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIML 1244
+ E+ + +L D +S D + + + +R+ ++ + L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYEN----CL 247
Query: 1245 LDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHS 1304
L L A + +C K L T R V + +
Sbjct: 248 LV-----LLNVQNAKAWNAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHI---- 289
Query: 1305 HLLKNNPDGCYARMIQLQRFTHSQVIGM 1332
L ++ T +V +
Sbjct: 290 -SLDHHSMT----------LTPDEVKSL 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 115/783 (14%), Positives = 230/783 (29%), Gaps = 241/783 (30%)
Query: 114 HGCS--FPIFLR-FFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISC 170
+ +F F + + ++ M + +L ++ + + +
Sbjct: 16 YQYKDILSVFEDAFVDNF------DCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTLR 66
Query: 171 WMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFI 230
WT + +M K++E L + ++ + ++T ++ T I Q ++L N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDN 123
Query: 231 HYLATFVTGFAVGFSAVWQL--ALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGN 288
F +L AL+ L + + G +GK+ +
Sbjct: 124 Q---VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VLGSGKT--WV----- 166
Query: 289 IVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVVFCSYAL 348
AL V + F +F
Sbjct: 167 ---------------------------ALDVCLSYKVQCKMD---------FKIF----- 185
Query: 349 LLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDHK 408
W L + L + I +++ S + + A++ R++ K
Sbjct: 186 --WLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 409 PSIDRNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKT--IALVGSSG 466
P L L +V + S +IL LT T +
Sbjct: 242 P----YENCLLVLLNVQNAKAWNAFNLS------CKIL----LT-----TRFKQVTDFLS 282
Query: 467 SGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQE-----P---ALFAT 518
+ +T +SL + L ++KSL L++L + + +E P ++ A
Sbjct: 283 AATTTHISLDHH-------SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 519 TIKENILLGRPD----ADLNEIEEAARVANAYSFIIKL-PDGFDTQVRERGVQLSGGQKQ 573
+I++ + D + +++ S + L P + R+ +L
Sbjct: 336 SIRDGL--ATWDNWKHVNCDKLTTIIE-----SSLNVLEPAEY----RKMFDRL------ 378
Query: 574 RIAIARAMLKNPAILLLDEATSAL--DSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKA 631
++ P ILL S + D V +++ H+ S + K
Sbjct: 379 --SVFPPSAHIPTILL-----SLIWFDVIKSD-VMVVVNKL----------HKYSLVEK- 419
Query: 632 DVVAVLQQGSVSEIGTHD---ELIAKGENGVYAKLIRMQEAAHETALNNARKSSARPSSA 688
Q S I EL K EN + A H + ++
Sbjct: 420 -------QPKESTISIPSIYLELKVKLEN---------EYALHRSIVD------------ 451
Query: 689 RNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSL-SLDATYPSY--RHEKLAFKEQASSF 745
Y F + D LD + S+ H K + +
Sbjct: 452 -------------HY------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 746 WRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSV-YYNPDHAYMIREIAKYCY 804
+R+ ++ ++ + + S +L+ + + +Y P Y+ KY
Sbjct: 493 FRMVFLDF-RFLEQKIRHDSTAWNAS-----GSILNTLQQLKFYKP---YICDNDPKY-- 541
Query: 805 LLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEE---NESARI 861
E L N + F + ENL + K + IA ++E E+ +
Sbjct: 542 --------ERLVNAILD-FLPKIEENL---ICSKYTDLL---RIALMAEDEAIFEEAHKQ 586
Query: 862 AAR 864
R
Sbjct: 587 VQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-05
Identities = 64/486 (13%), Positives = 131/486 (26%), Gaps = 156/486 (32%)
Query: 817 NTLQHSFWDIVGENLTKRVR-------EKMLAAVLKNE----IAWFDQEENESARIAARL 865
Q+ + DI+ V + M ++L E I + + R+ L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 866 ALDANN-VRSAIGD-----------RIQVIVQNTALMLVACTAGFVLQ----WRLALVLI 909
V+ + + I+ + ++M T ++ Q + V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM----TRMYIEQRDRLYNDNQVFA 127
Query: 910 AVF-----PVVVAATVLQKMF---------MKGFSGDMEAAHSKATQLAGEAIGNVRTVA 955
P + L ++ + G G K T +A + + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-G-------K-TWVALDVCLSYKVQC 178
Query: 956 AFNSEL--MIVGLFSS------NLQTPLRR--CFWKGQIAGSG----------YGVAQFC 995
+ ++ + + +S LQ L + W + S + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 996 LYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSV 1055
Y L LV + + +K F N + + L + V
Sbjct: 239 KSKPYENCL-----LVLLNVQN-AKAWNAF-------NLSCKILLTTRF--------KQV 277
Query: 1056 FDLLD--RKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKT 1113
D L T I D T PD ++ + LK++D +DL
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCR---------PQDLPREVLTTNP 327
Query: 1114 LALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI----RKYNLKSLRR--HMAIVPQE 1167
L S+I + DG + N L ++ E
Sbjct: 328 RRL---------SII-----------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 1168 PCLFASTIYENIA----------------YGHESATESEII----EAARLANAD--KFIS 1205
P + +++ ++ + ++ ++ L +
Sbjct: 368 PAEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 1206 SLPDGY 1211
S+P Y
Sbjct: 427 SIPSIY 432
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 62/237 (26%), Positives = 102/237 (43%), Gaps = 26/237 (10%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI---ERFYDPTSGQVLLDGHDIKSLKLRW 501
IL SL V G+ A++G +GSGKST+ + + E Y+ T G V G D+ +L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP-E 92
Query: 502 LRQQIG--LVSQEP--------ALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIK 551
R G + Q P F T + R L+ + + + +
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL-- 150
Query: 552 LPDGFDTQVRERGVQ--LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609
+ R V SGG+K+R I + + P + +LDE+ S LD ++ K+V + +
Sbjct: 151 ---KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 610 DRFMI-GRTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+ R+ +++ H R+ K D V VL QG + + G L+ + E Y L
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF-TLVKQLEEQGYGWL 263
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 8e-14
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLI---ERFYDPTSGQVLLDGHDIKSLKLRW 501
IL +L VP G+ AL+G +G+GKST+ ++ Y G++LLDG +I L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSP-D 75
Query: 502 LRQQIG--LVSQEP--------ALFATTIKENILLGRPDAD--LNEIEEAARVANAYSFI 549
R + G L Q P A F + L ++++A +
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE-------L 128
Query: 550 IKLPDGFDTQVRERGVQ--LSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
+ + + R + SGG+K+R I + ++ P +LDE S LD ++ K+V
Sbjct: 129 LDWDESY----LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
Query: 608 ALDRFMI-GRTTLVIAH--RLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
++ LVI H R+ + D V V+ G V G EL + E Y L
Sbjct: 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP-ELALELEAKGYEWLK 243
Query: 665 RMQEAA 670
+
Sbjct: 244 EKVKEG 249
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1097 DIPIFRDLSLRARAGKTLALVGPSGCGKS---SVIALVQRFYEPSSGRVMIDGKDI 1149
I + ++L G+ AL+GP+G GKS ++A Y G +++DG++I
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENI 69
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 5e-09
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 518 TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGV-----QLSGGQK 572
+E L + E + + + V G LSGG++
Sbjct: 195 ALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Query: 573 Q------RIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRL 625
R+A++ + ++L+LDE T LD E + + ++R++ ++++H
Sbjct: 255 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314
Query: 626 STIRKADVV 634
AD V
Sbjct: 315 ELKDAADHV 323
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGV-----QLSGGQKQRV------AIARAF 1236
E ++ + + + + FV G LSGG++ + A++
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269
Query: 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACS-GKTTIVVAHRLSTIRNA-HVIAV 1291
+ +++LDE T LD E R + ++R I+V+H A HVI +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 566 QLSGGQKQRIAIA------RAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTT 618
LSGG++ + +A + ++L+LDE T LD E + + ++R++
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 619 LVIAHRLSTIRKADVV 634
++++H AD V
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 1221 QLSGGQKQRVAIA------RAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTT 1273
LSGG++ + +A + +++LDE T LD E R + ++R
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1274 IVVAHRLSTIRNAHVIAVIDDGKVA 1298
I+V+H A + I
Sbjct: 117 ILVSHDEELKDAADHV--IRISLEN 139
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 502 LRQQIGLVSQEPALFATTIKENILLGRPDADLNE-IEEAARVANAYSFIIKLPDGFDTQV 560
L + + + + +F + L + + + + EA + ++L F+ +V
Sbjct: 210 LTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRV 269
Query: 561 RERGV-----QLSGGQKQRIAIA-------RAMLKNPAILLLDEATSALDSESEKLVQEA 608
LSGG++ +A++ + ++LDE T LD + E
Sbjct: 270 HAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI 329
Query: 609 LDRFMIGRTTLVIAHRLSTIRKADVV-AVLQQGSVSEI 645
+ ++I H ADV+ V + G+VS++
Sbjct: 330 FRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKV 367
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 1221 QLSGGQKQRVAIARAF-------VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTT 1273
LSGG++ VA++ + E ++LDE T LD + E + S
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1274 IVVAHR 1279
I++ H
Sbjct: 340 IIITHH 345
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 1217 ERGVQ-LSGGQKQRVAIARAFV------RKAEIMLLDEATSALDAESERSVQEALDR-AC 1268
ER + LSGG++ ++I+ A + + +DE S+LD E++ + L
Sbjct: 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER 333
Query: 1269 SGKTTIVVAH 1278
K + + H
Sbjct: 334 LNKVIVFITH 343
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1350 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-102 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-101 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-97 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-95 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-92 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-92 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-89 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-84 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-87 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-87 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-74 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-72 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-55 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-52 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-47 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-47 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-45 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-47 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-46 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-44 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-40 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-39 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-39 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-39 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-37 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-39 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-38 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-38 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-36 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-32 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-33 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-25 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-25 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-10 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-08 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 8e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-07 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 4e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 323 bits (830), Expect = e-102
Identities = 139/255 (54%), Positives = 179/255 (70%), Gaps = 3/255 (1%)
Query: 413 RNSESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTV 472
+N ++ G I++ HV F Y E IL + +L++ G+T+A VG SG GKST+
Sbjct: 2 KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 473 VSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532
++LI RFYD TSGQ+L+DGH+IK LR QIGLV Q+ LF+ T+KENILLGRP A
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
E+ EAA++ANA+ FI+ LP G+DT+V ERGV+LSGGQKQR++IAR L NP IL+LDE
Sbjct: 121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 593 ATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELI 652
ATSALD ESE ++QEALD RTTL++AHRLSTI AD + V++ G + E GTH ELI
Sbjct: 181 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240
Query: 653 AKGENGVYAKLIRMQ 667
AK G Y L +Q
Sbjct: 241 AK--QGAYEHLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 320 bits (823), Expect = e-101
Identities = 118/255 (46%), Positives = 172/255 (67%), Gaps = 4/255 (1%)
Query: 1068 DDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSV 1127
+ A P+ + +G +++ HV F Y + PI +D++L G+T+A VG SG GKS++
Sbjct: 3 NGVGAQPIEIK-QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTL 60
Query: 1128 IALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESAT 1187
I L+ RFY+ +SG+++IDG +I+ + SLR + +V Q+ LF+ T+ ENI G +AT
Sbjct: 61 INLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT 120
Query: 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDE 1247
+ E++EAA++ANA FI +LP GY T VGERGV+LSGGQKQR++IAR F+ I++LDE
Sbjct: 121 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE 180
Query: 1248 ATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLL 1307
ATSALD ESE +QEALD +TT++VAHRLSTI +A I VI++G + E G+H L+
Sbjct: 181 ATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240
Query: 1308 KNNPDGCYARMIQLQ 1322
G Y + +Q
Sbjct: 241 AKQ--GAYEHLYSIQ 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 311 bits (797), Expect = 1e-97
Identities = 136/253 (53%), Positives = 177/253 (69%), Gaps = 4/253 (1%)
Query: 416 ESGLELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSL 475
E +D +G +E ++V F+YP R EV L N +L +PAGKT+ALVG SGSGKST+ SL
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 476 IERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA-DLN 534
I RFYD G +L+DGHD++ L LR Q+ LVSQ LF T+ NI R +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEAT 594
+IEEAAR+A A FI K+ +G DT + E GV LSGGQ+QRIAIARA+L++ IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 595 SALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAK 654
SALD+ESE+ +Q ALD RT+LVIAHRLSTI +AD + V++ G + E GTH EL+A+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 655 GENGVYAKLIRMQ 667
+GVYA+L +MQ
Sbjct: 241 --HGVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 303 bits (777), Expect = 7e-95
Identities = 121/253 (47%), Positives = 175/253 (69%), Gaps = 4/253 (1%)
Query: 1071 DATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIAL 1130
+ V DR G++E ++V F+YP R ++P R+++L+ AGKT+ALVG SG GKS++ +L
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 1131 VQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH-ESATES 1189
+ RFY+ G +++DG D+R+Y L SLR +A+V Q LF T+ NIAY E +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 1190 EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEAT 1249
+I EAAR+A A FI+ + +G T +GE GV LSGGQ+QR+AIARA +R + I++LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 1250 SALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
SALD ESER++Q ALD +T++V+AHRLSTI A I V++DG + E G+HS LL
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 1310 NPDGCYARMIQLQ 1322
+ G YA++ ++Q
Sbjct: 241 H--GVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 295 bits (757), Expect = 3e-92
Identities = 105/249 (42%), Positives = 156/249 (62%), Gaps = 5/249 (2%)
Query: 1075 VPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF 1134
P L G V+ + V F+YP+RPD+ + + L+ R G+ ALVGP+G GKS+V AL+Q
Sbjct: 4 TPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 63
Query: 1135 YEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGH-ESATESEIIE 1193
Y+P+ G++++DGK + +Y + L R +A V QEP +F ++ ENIAYG + T EI
Sbjct: 64 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 123
Query: 1194 AARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALD 1253
AA + A FIS LP GY T V E G QLSGGQ+Q VA+ARA +RK +++LD+ATSALD
Sbjct: 124 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 183
Query: 1254 AESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNP 1311
A S+ V++ L + ++ +++ LS + A I ++ G + E G+H L++
Sbjct: 184 ANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK- 242
Query: 1312 DGCYARMIQ 1320
GCY M+Q
Sbjct: 243 -GCYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 294 bits (754), Expect = 9e-92
Identities = 103/250 (41%), Positives = 159/250 (63%), Gaps = 5/250 (2%)
Query: 419 LELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478
L + GL++ + V F+YP+RP+V +L + T+ G+ ALVG +GSGKSTV +L++
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 479 FYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIE 537
Y PT GQ+LLDG + + R+L +Q+ V QEP +F +++ENI G + EI
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL 597
AA + A+SFI LP G+DT+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 598 DSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKG 655
D+ S+ V++ L R+ L+I LS + +AD + L+ G++ E GTH +L+ K
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK- 241
Query: 656 ENGVYAKLIR 665
G Y +++
Sbjct: 242 -KGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 285 bits (732), Expect = 7e-89
Identities = 115/242 (47%), Positives = 163/242 (67%), Gaps = 5/242 (2%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++ +HVDF+Y ++ L + S IA G SG GKST+ SL+ERFY PT+G+
Sbjct: 1 MLSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLG-RPDADLNEIEEAARVANA 545
+ +DG I ++ L R QIG VSQ+ A+ A TI+EN+ G D ++ + +A A
Sbjct: 59 ITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
SF+ +PD +T+V ERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LDSESE +V
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 606 QEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665
Q+ALD M GRTTLVIAHRLSTI AD + +++G ++ G H+EL+A + +YAK +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVS 236
Query: 666 MQ 667
Q
Sbjct: 237 EQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 272 bits (698), Expect = 3e-84
Identities = 105/241 (43%), Positives = 156/241 (64%), Gaps = 5/241 (2%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ +HVDF+Y I RD+S A+ +A GPSG GKS++ +L++RFY+P++G +
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIE-AARLANAD 1201
IDG+ I +L++ R + V Q+ + A TI EN+ YG E E + LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
F+ ++PD T VGERGV++SGGQ+QR+AIARAF+R +I++LDEAT++LD+ESE VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
+ALD G+TT+V+AHRLSTI +A I I+ G++ G H+ L+ +P YA+ +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPL--YAKYVSE 237
Query: 1322 Q 1322
Q
Sbjct: 238 Q 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 282 bits (722), Expect = 1e-87
Identities = 108/240 (45%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
I +++ F Y V IL+N +L++ G+ I +VG SGSGKST+ LI+RFY P +GQV
Sbjct: 2 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYS 547
L+DGHD+ WLR+Q+G+V Q+ L +I +NI L P + ++ AA++A A+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 548 FIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQE 607
FI +L +G++T V E+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 608 ALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQ 667
+ + GRT ++IAHRLST++ AD + V+++G + E G H EL+++ +Y+ L ++Q
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 280 bits (718), Expect = 5e-87
Identities = 101/241 (41%), Positives = 154/241 (63%), Gaps = 2/241 (0%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++ +++ F Y I +++L + G+ + +VG SG GKS++ L+QRFY P +G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANAD 1201
V+IDG D+ + LRR + +V Q+ L +I +NI+ + + ++I AA+LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
FIS L +GY T VGE+G LSGGQ+QR+AIARA V +I++ DEATSALD ESE +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1262 EALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321
+ + C G+T I++AHRLST++NA I V++ GK+ E G H LL + P+ Y+ + QL
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQL 238
Query: 1322 Q 1322
Q
Sbjct: 239 Q 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 247 bits (631), Expect = 1e-74
Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 19/269 (7%)
Query: 422 DSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD 481
+ +V FS+ +L N +L + G+ +A+ GS+GSGK++++ LI +
Sbjct: 28 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 482 PTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAAR 541
+ G + G ++ SQ + TIKENI+ G D + +
Sbjct: 88 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVK 133
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
I K + +T + E GV LSGGQ+ RI++ARA+ K+ + LLD LD +
Sbjct: 134 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193
Query: 602 -EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVY 660
E++ + + + M +T +++ ++ +RKAD + +L QGS GT EL + +
Sbjct: 194 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDF 251
Query: 661 AKLIRMQEAAHETALNNARKSSARPSSAR 689
+ + + + R+SS + R
Sbjct: 252 SSKLMGYDTFDQ--FTEERRSSILTETLR 278
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 240 bits (613), Expect = 4e-72
Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 18/277 (6%)
Query: 1049 GRAMRSVFDLLDRKTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDIPIFRDLSLRA 1108
G M +V + + + + + +V FS+ P+ ++++L
Sbjct: 2 GIIMENVTAFWEEGFGELLEKVQQSNGDRKH--SSDENNVSFSHLCLVGNPVLKNINLNI 59
Query: 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEP 1168
G+ LA+ G +G GK+S++ L+ E S G + G+ ++ Q
Sbjct: 60 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFS 106
Query: 1169 CLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQ 1228
+ TI ENI +G E + + I+ + T +GE GV LSGGQ+
Sbjct: 107 WIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1229 RVAIARAFVRKAEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVAHRLSTIRNAH 1287
R+++ARA + A++ LLD LD +E V E+ + + + KT I+V ++ +R A
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1288 VIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRF 1324
I ++ G G+ S L PD ++++ F
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPD-FSSKLMGYDTF 261
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 191 bits (486), Expect = 1e-55
Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 13/231 (5%)
Query: 427 LIELKHVDFSYPSR-PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+I+LK+V +Y + L N +L + G+ ++++G SGSGKST++++I PT G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 486 QVLLDGHDIKSLK----LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLN--EIEE 538
+V +D L + R +IG V Q+ L T EN+ L EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 539 AARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALD 598
+ A + +L + F + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD
Sbjct: 121 RRKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 599 SESEKLVQEALDRF--MIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647
S++ + + + L + G+T +V+ H ++ R + + L+ G V
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 182 bits (463), Expect = 1e-52
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%)
Query: 1083 VELKHVDFSYPSR-PDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++LK+V +Y I ++++L + G+ ++++GPSG GKS+++ ++ +P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1142 VMIDGKDIRKYNLKSLRR----HMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAAR 1196
V ID + L + + V Q+ L T EN+ + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1197 LANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAES 1256
A + + + + F + QLSGGQ+QRVAIARA I+L D+ T ALD+++
Sbjct: 122 RKRALE-CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1257 ERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELG 1301
+ + L + GKT +VV H ++ R I + DG+V
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 167 bits (425), Expect = 2e-47
Identities = 62/241 (25%), Positives = 119/241 (49%), Gaps = 14/241 (5%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L+++ + +N +LT+ G+ + L+G SG GK+T + +I +PT G++
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAY 546
D+ L + + I +V Q A++ T+ ENI + E RV A
Sbjct: 64 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
++++ + + QLSGGQ+QR+A+ARA++ P +LL+DE S LD++ ++
Sbjct: 122 E-LLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 607 EALDR--FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+ + + TT+ + H D +AV+ +G + +IG+ E+ + + A
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATF 236
Query: 664 I 664
I
Sbjct: 237 I 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 159 bits (404), Expect = 1e-44
Identities = 67/246 (27%), Positives = 124/246 (50%), Gaps = 27/246 (10%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
EV+L+++ + + L+L + G+ L L+GPSGCGK++ + ++ EP+ GR
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1142 VMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHE------SATESEIIEA 1194
+ +D+ L R++++V Q ++ T+YENIA+ + + + A
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 1195 ARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDA 1254
A L ++ ++ P QLSGGQ+QRVA+ARA V + +++L+DE S LDA
Sbjct: 121 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 1255 ESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311
+ +++ + + TTI V H IAV++ G++ ++GS + + P
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY-LRP 228
Query: 1312 DGCYAR 1317
+ +
Sbjct: 229 NSVFVA 234
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 166 bits (421), Expect = 5e-47
Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 28/238 (11%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+++L+ V S L S V AG+ + LVG +G+GKST+++ + G
Sbjct: 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 54
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPAL-FATTIKENILLGRPDADLNEIEEAARVANA 545
+ G +++ L +SQ+ FAT + + L + D E+ A
Sbjct: 55 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL- 113
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK-------NPAILLLDEATSALD 598
D ++ QLSGG+ QR+ +A +L+ +LLLDE ++LD
Sbjct: 114 ---------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 599 SESEKLVQEALDRFMI-GRTTLVIAHRLS-TIRKADVVAVLQQGSVSEIGTHDELIAK 654
+ + + L G ++ +H L+ T+R A +L+ G + G +E++
Sbjct: 165 VAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 161 bits (409), Expect = 2e-45
Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
++L+ V S LS RAG+ L LVGP+G GKS+++A + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 55
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCL-FASTIYENIAYGHESATESEIIEAARLANAD 1201
G+ + ++ L H A + Q+ FA+ ++ + T +E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKA-------EIMLLDEATSALDA 1254
+G QLSGG+ QRV +A ++ +++LLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1255 ESERSVQEALDR-ACSGKTTIVVAHRLS-TIRNAHVIAVIDDGKVAELGSHSHLLKN 1309
+ ++ + L G ++ +H L+ T+R+AH ++ GK+ G +L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 166 bits (422), Expect = 6e-47
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 13/236 (5%)
Query: 427 LIELKHVDFSYPSRP-EVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
+I+L ++ + ++ LNN SL VPAG+ ++G+SG+GKST++ + PT G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 486 QVLLDGHDIKSLK---LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAAR 541
VL+DG ++ +L L R+QIG++ Q L ++ T+ N+ L + + E R
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
V S + L D D+ LSGGQKQR+AIARA+ NP +LL DEATSALD +
Sbjct: 121 VTELLSL-VGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 602 EKLVQEALDRF--MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654
+ + E L +G T L+I H + +++ D VAV+ G + E T E+ +
Sbjct: 176 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 6e-43
Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 1083 VELKHVDFSYPSRP-DIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++L ++ + I ++SL AG+ ++G SG GKS++I V P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1142 VMIDGKDIRKYNLK---SLRRHMAIVPQEPCLFAS-TIYENIAYGHE------SATESEI 1191
V++DG+++ + RR + ++ Q L +S T++ N+A E + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E L S P LSGGQKQRVAIARA +++L DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1252 LDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308
LD + RS+ E L G T +++ H + ++ +AVI +G++ E + S +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1309 N 1309
+
Sbjct: 231 H 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 164 bits (417), Expect = 4e-46
Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+ + + Y +L SL AG I+++GSSGSGKST + I P+ G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 488 LLDGHDIKSLK-------------LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADL 533
+++G +I ++ LR LR ++ +V Q L++ T+ EN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 534 NEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEA 593
+A A Y + + + + V LSGGQ+QR++IARA+ P +LL DE
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 176
Query: 594 TSALD-SESEKLVQEALDRFMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDEL 651
TSALD ++++ G+T +V+ H + R + V L QG + E G +++
Sbjct: 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
Query: 652 IAKGENGVYAKLIR 665
++ + ++
Sbjct: 237 FGNPQSPRLQQFLK 250
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 158 bits (400), Expect = 9e-44
Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 39/260 (15%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
++ + + Y + + +SL+ARAG ++++G SG GKS+ + + +PS G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1142 VMIDGKDI-------------RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG---HE 1184
++++G++I K L+ LR + +V Q L++ T+ EN+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1185 SATESEIIEAA-----RLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239
++ + E A ++ ++ P LSGGQ+QRV+IARA +
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAME 167
Query: 1240 AEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297
+++L DE TSALD E V + + GKT +VV H + R+ + + + GK+
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
Query: 1298 AELGSHSHLLKNNPDGCYAR 1317
E G + NP +
Sbjct: 228 EEEGDPEQVF-GNPQSPRLQ 246
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 147 bits (373), Expect = 3e-40
Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 23/244 (9%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++ +++ + E + L+ S++V G ++G +GSGKST++++I F G+
Sbjct: 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
Query: 487 VLLDGHDIKSLKLRWL-RQQIGLVSQEPALFAT-TIKENILLGRP------------DAD 532
V + DI + + L I Q P T+ EN+L+G
Sbjct: 61 VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 120
Query: 533 LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDE 592
+ + EE A +KL +D + +LSGGQ + + I RA++ NP ++++DE
Sbjct: 121 IPKEEEMVEKAFKILEFLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 593 ATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDE 650
+ + + + G T L+I HRL + D + V+ G + G +E
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 651 LIAK 654
I
Sbjct: 237 EIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 144 bits (364), Expect = 5e-39
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 19/241 (7%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+ +++ + + +S+ G ++GP+G GKS++I ++ F + GRV
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1143 MIDGKDI-RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEII-------- 1192
+ KDI K + + Q P T+ EN+ G ES +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1193 --EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATS 1250
E + A K + L + +LSGGQ + V I RA + +++++DE +
Sbjct: 122 PKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 179
Query: 1251 ALDAESERSVQEALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308
+ + + G T +++ HRL + N + V+ +G++ G +K
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
Query: 1309 N 1309
N
Sbjct: 240 N 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 145 bits (367), Expect = 1e-39
Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+ L V + EV + SL V G+ + L+G SG GK+T + +I +P+ GQ
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 487 VLLDGHDIKSLK----LRWLRQQIGLVSQEPALF-ATTIKENILLGRPDADLNEIEEAAR 541
+ + + + + + I +V Q AL+ T+ +NI + E R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 542 VANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES 601
V ++ L + + + R +LSGGQ+QR+A+ RA+++ P + L+DE S LD++
Sbjct: 120 VREVAE-LLGLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 602 EKLVQEALDR--FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658
++ L + +G TT+ + H D +AV+ +G + ++G+ DE+ K N
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANT 234
Query: 659 VYAKLI 664
A I
Sbjct: 235 FVAGFI 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 135 bits (341), Expect = 3e-36
Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 29/249 (11%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V L V + ++ R++SL + G+ + L+GPSGCGK++ + ++ EPS G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1143 MIDGKDIRKYNLKSLRR----HMAIVPQEPCLFAS-TIYENIAYGHE------SATESEI 1191
I K + +A+V Q L+ T+Y+NIA+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSA 1251
E A L + ++ P +LSGGQ+QRVA+ RA VRK ++ L+DE S
Sbjct: 121 REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1252 LDAESERSVQEALDR--ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308
LDA+ ++ L + G TTI V H IAV++ G + ++GS +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY- 228
Query: 1309 NNPDGCYAR 1317
+ P +
Sbjct: 229 DKPANTFVA 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 143 bits (363), Expect = 1e-39
Identities = 40/217 (18%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
+E++ + Y + +L ++T+ G + G +G GK+T++ I + P G++
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGR----PDADLNEIEEAARV 542
+ +G I ++ +I + +E + ++++ + + NEI +A
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
++++ +LS G +R+ +A +L N I +LD+ A+D +S+
Sbjct: 114 VEV------------LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 603 KLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQ 639
V +++ + + ++I+ R + DV L +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 136 bits (343), Expect = 6e-37
Identities = 38/214 (17%), Positives = 90/214 (42%), Gaps = 27/214 (12%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++ + Y D P+ +++ G + GP+G GK++++ + + +P G ++
Sbjct: 4 EIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 1144 IDGKDIRKYNLKSLRRHMAIVPQEP-CLFASTIYENIAYG----HESATESEIIEAARLA 1198
+G I K ++ + +P+E ++ + + ++EI++A
Sbjct: 60 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
++ +LS G +RV +A + AEI +LD+ A+D +S+
Sbjct: 115 EVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 1259 SVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVI 1292
V +++ K ++++ R + V +
Sbjct: 163 KVLKSILEILKEKGIVIISSR-EELSYCDVNENL 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 142 bits (360), Expect = 7e-39
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 14/241 (5%)
Query: 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV 487
++L++V ++ EV + + +L + G+ + VG SG GKST++ +I TSG +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 488 LLDGHDIKSLKLRWLRQQIGLVSQEPALF-ATTIKENILLGRPDADLNEIEEAARVANAY 546
+ + + +G+V Q AL+ ++ EN+ G A + RV
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 547 SFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQ 606
+++L D + + LSGGQ+QR+AI R ++ P++ LLDE S LD+ ++
Sbjct: 116 E-VLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 607 EALDR--FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663
+ R +GRT + + H AD + VL G V+++G EL + A
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 230
Query: 664 I 664
I
Sbjct: 231 I 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 133 bits (336), Expect = 1e-35
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 15/239 (6%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
V+L++V ++ ++ + +D++L G+ + VGPSGCGKS+++ ++ +SG +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLF-ASTIYENIAYGHESATESEIIEAARLANAD 1201
I K + + R + +V Q L+ ++ EN+++G + A + + R+
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
+ + L LSGGQ+QRVAI R V + + LLDE S LDA ++
Sbjct: 116 EVL-QLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 1262 EALDR--ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317
+ R G+T I V H A I V+D G+VA++G L + P +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY-HYPADRFVA 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 141 bits (357), Expect = 2e-38
Identities = 58/247 (23%), Positives = 113/247 (45%), Gaps = 16/247 (6%)
Query: 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG 485
G + +K + + IL S + G+ L+G +G+GK+T + +I P+SG
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 486 QVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVAN 544
V + G ++ +R+ I + +E + E + + E V
Sbjct: 58 IVTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
A G ++++R S G +++ IARA++ NP + +LDE TS LD + +
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 605 VQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG---- 658
V++ L + G T LV +H + + D +A++ G++ E GT +EL + +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231
Query: 659 VYAKLIR 665
V+ ++++
Sbjct: 232 VFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (332), Expect = 5e-35
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 12/232 (5%)
Query: 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140
G V +K + + I + +S G+ L+GP+G GK++ + ++ +PSSG
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1141 RVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLAN 1199
V + GK++ +R+ ++ +P+E + + E + + S +
Sbjct: 58 IVTVFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1200 ADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS 1259
A + G + +R S G +++ IARA + + +LDE TS LD + R
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1260 VQEALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
V++ L + + G T +V +H + + IA+I +G + E G+ L +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 140 bits (353), Expect = 8e-38
Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 1084 ELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143
E++ + Y I + + L+ G+ + L+G +G GK++ ++ + G+++
Sbjct: 8 EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1144 IDGKDI-RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANAD 1201
+G+DI K R +A+VP+ +F T+YEN+ G + + E I+
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 1202 KFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQ 1261
F K + + G LSGG++Q +AI RA + + +++++DE + L V
Sbjct: 125 LF-----PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1262 EALDR-ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
E + + G T ++V AH V++ G++ G S LL N
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 136 bits (345), Expect = 1e-36
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 12/231 (5%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
++E++ + Y + + L VP G+ + L+G++G+GK+T +S I G+
Sbjct: 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 487 VLLDGHDIKSLK-LRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVAN 544
++ +G DI + R I LV + +F T+ EN+++G + E +
Sbjct: 63 IIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEW 121
Query: 545 AYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKL 604
+S +L + LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 122 IFSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 605 VQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIA 653
V E + + G T L++ K A VL+ G + G EL+
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 129 bits (326), Expect = 2e-34
Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 18/242 (7%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
+IE++ + + + L+N SL V +G+ ++G +G+GK+ + LI F+ P SG+
Sbjct: 1 MIEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR 56
Query: 487 VLLDGHDIKSLKLRWLRQQIGLVSQEPALF-ATTIKENILLGRPDADLNEIEEAARVANA 545
+LLDG D+ L + I V Q +LF +K+N+ G + + + A
Sbjct: 57 ILLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD 114
Query: 546 YSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLV 605
K+ D + LSGG++QR+A+ARA++ NP ILLLDE SALD +++
Sbjct: 115 L----KIEHLLD----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 606 QEALDR--FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAK 662
+E L T L I H + R AD +AV+ G + ++G +E+ K G A
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVAS 226
Query: 663 LI 664
+
Sbjct: 227 FV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 125 bits (315), Expect = 6e-33
Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 24/234 (10%)
Query: 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRV 1142
+E++ + + + +LSL+ +G+ ++GP+G GK+ + L+ F+ P SGR+
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1143 MIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYG---HESATESEIIEAARLA 1198
++DGKD+ +L + +A V Q LF + +N+ +G + +++ AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1199 NADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESER 1258
+ + P LSGG++QRVA+ARA V +I+LLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1259 SVQEALDR--ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309
+ +E L + T + + H + R A IAV+ DGK+ ++G + +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 129 bits (325), Expect = 4e-34
Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 13/245 (5%)
Query: 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQ 486
I +K+V + + +V L+N ++ + G+ ++G SG+GK+T + +I P++G+
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 487 VLLDGHDIKSLKLRWLR---QQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARV 542
+ D + S + ++IG+V Q AL+ T ENI + +++ E RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 543 ANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESE 602
I+ + + R +LSG Q+QR+A+ARA++K+P++LLLDE S LD+
Sbjct: 122 EEVAK-ILDIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 603 KLVQEALDR--FMIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGV 659
+ + +G T LV++H + I AD V VL +G + ++G ++L +
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
Query: 660 YAKLI 664
A LI
Sbjct: 237 VASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 125 bits (315), Expect = 1e-32
Identities = 61/243 (25%), Positives = 113/243 (46%), Gaps = 14/243 (5%)
Query: 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141
+ +K+V + + + ++++ G+ ++GPSG GK++ + ++ PS+G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1142 VMIDGKDI---RKYNLKSLRRHMAIVPQEPCLFAS-TIYENIAYGHESATESEIIEAARL 1197
+ D + + K + R + +V Q L+ + T +ENIA+ + S+ R+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1198 ANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESE 1257
K + + +LSG Q+QRVA+ARA V+ ++LLDE S LDA
Sbjct: 122 EEVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1258 RSVQEALDR--ACSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314
S + + + G T +VV+H + I A + V+ GK+ ++G L +NP
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY-DNPVSI 235
Query: 1315 YAR 1317
Sbjct: 236 QVA 238
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 128 bits (324), Expect = 5e-34
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162
++ L+GP+G GKS + L+ +P G V ++G DI L RR +
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1163 IVPQEPCLFAS-TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQ 1221
VPQ+ LF ++Y NIAYG + E R G + + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPAR 126
Query: 1222 LSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR--ACSGKTTIVVAHR 1279
LSGG++QRVA+ARA V + ++LLDE SA+D +++ + E L + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 1280 LSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMI 1319
L A +AV+ +G++ E G L + +G A +
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELF-SAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 9e-33
Identities = 74/233 (31%), Positives = 111/233 (47%), Gaps = 20/233 (8%)
Query: 442 EVRI---LNNFSLTV---PAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIK 495
+VR L NF L V L+G +G+GKS + LI P G+V L+G DI
Sbjct: 4 KVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT 63
Query: 496 SLKLRWLRQQIGLVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPD 554
L R+ IG V Q+ ALF ++ NI G + + E + R
Sbjct: 64 PLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------L 114
Query: 555 GFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDR--F 612
G + + +LSGG++QR+A+ARA++ P +LLLDE SA+D +++ ++ E L
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 613 MIGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664
L + H L AD VAV+ G + E G EL + +NG A+ +
Sbjct: 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA-KNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 101 bits (251), Expect = 6e-25
Identities = 14/192 (7%), Positives = 43/192 (22%), Gaps = 29/192 (15%)
Query: 1114 LALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFAS 1173
+ + G G GK++++ + + + + ++ R + ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1174 TIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIA 1233
G V + + A
Sbjct: 63 FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93
Query: 1234 RAFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVID 1293
A + +++++DE + + I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1294 DGKVAELGSHSH 1305
+ EL +
Sbjct: 154 GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 100 bits (249), Expect = 8e-25
Identities = 19/191 (9%), Positives = 42/191 (21%), Gaps = 29/191 (15%)
Query: 459 IALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFAT 518
I + G G GK+T+V I + + K R + I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 519 TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578
L+G + + + A
Sbjct: 63 FFTSKKLVGSYGVN-----------------------------VQYFEELAIPILERAYR 93
Query: 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQ 638
A ++++DE + + + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 639 QGSVSEIGTHD 649
+ E+ +
Sbjct: 154 GAVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 61.9 bits (148), Expect = 1e-10
Identities = 32/307 (10%), Positives = 94/307 (30%), Gaps = 6/307 (1%)
Query: 103 LMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWA 162
+ + + ++ S L L++ + +L + +
Sbjct: 17 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD-----RSVLLWMPLVVIGLMILRGI 71
Query: 163 SSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAI 222
+S+ C W + + MR + + V +FD + + + + +
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 131
Query: 223 SEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEA 282
+ + + + + +++ + + P++++ + + ++ Q
Sbjct: 132 GALITVVREGASIIGLFIMMFYYSWQL-SIILVVLAPIVSIAIRVVSKRFRSISKNMQNT 190
Query: 283 LSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYFVV 342
+ Q EQ + + V F G+ + + + G K A + +
Sbjct: 191 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIA 250
Query: 343 FCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIF 402
+ A +L+ + G +++ L + F + A +F
Sbjct: 251 SLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLF 310
Query: 403 RIIDHKP 409
I+D +
Sbjct: 311 AILDSEQ 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 57.6 bits (137), Expect = 4e-09
Identities = 48/321 (14%), Positives = 118/321 (36%), Gaps = 7/321 (2%)
Query: 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIM-SVYYNPDHAYMIREIAKYC 803
F RL +P +V + ++ + + F +L ++ + D + ++
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW----MP 59
Query: 804 YLLIGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAA 863
++IGL + + + V + +R ++ ++ +A+FD++ +
Sbjct: 60 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 119
Query: 864 RLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQK 923
D+ V S+ + +V+ A ++ F W+L+++L+ + P+V A +
Sbjct: 120 TY--DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 177
Query: 924 MFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQ 983
+ S +M+ + T A + + + V F + + F +
Sbjct: 178 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237
Query: 984 IAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAP 1043
+ + Q + A L+ +S+ VF ++ +
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297
Query: 1044 DFIKGGRAMRSVFDLLDRKTE 1064
F +G A +++F +LD + E
Sbjct: 298 QFQRGMAACQTLFAILDSEQE 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 61.1 bits (146), Expect = 3e-10
Identities = 45/309 (14%), Positives = 94/309 (30%), Gaps = 2/309 (0%)
Query: 101 YVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAI 160
I + F P+ +++ D V + + +K+ + +
Sbjct: 16 IFATIIVGIIKFGIPMLIPLLIKYAIDGVIN-NHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 161 WASSWAEISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQD 220
+ WT + +R K +++ + IN
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDF 134
Query: 221 AISEKLGNFIHYLATFVTGFAVGFSAVWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQ 280
I L N T + ++ F +L L L + P + + L KL +
Sbjct: 135 -ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 281 EALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKSGFAKGMGLGATYF 340
+AL++ + + V I VV +F E + + K A
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 341 VVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAK 400
V +++ G YL G A + + + L + S + ++ + +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 401 IFRIIDHKP 409
+F++ID
Sbjct: 314 VFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 54.5 bits (129), Expect = 4e-08
Identities = 25/320 (7%), Positives = 81/320 (25%), Gaps = 2/320 (0%)
Query: 747 RLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLL 806
R + P + +I + ++ + N ++ +
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 807 IGLSSAELLFNTLQHSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLA 866
++ + + + ++ + + + A + +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 867 LDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQWR--LALVLIAVFPVVVAATVLQKM 924
+ + ++ ++ + + + L L + +FP + +
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 925 FMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKGQI 984
++ + + A ++ E + + V +F E F L R +
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 985 AGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPD 1044
+ + + ++L G L + +
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 1045 FIKGGRAMRSVFDLLDRKTE 1064
+ +M VF L+D +
Sbjct: 304 LTQSFASMDRVFQLIDEDYD 323
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 8e-10
Identities = 24/173 (13%), Positives = 50/173 (28%), Gaps = 6/173 (3%)
Query: 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALF 516
+ + L G G GK+T++ + V + R + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 517 ATTIKENILLGRPDADLN---EIEEAARVANAYSFIIKLPD--GFDTQVRERGVQLSGGQ 571
+ E R ++ ++A G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 572 KQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHR 624
+ I R L P ++L LV+E +R + + +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-07
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 7/160 (4%)
Query: 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLF 1171
+ + L GP G GK+++I + S V + + + + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1172 ASTIYENIAYGHESAT-----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ 1226
+ E E + E L S G + V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1227 KQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDR 1266
+ + R + ++L T + ++ E +
Sbjct: 122 QLFIQAVRQTLSTPGTIIL--GTIPVPKGKPLALVEEIRN 159
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 4e-04
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 568 SGGQKQRIAI----ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRT-TLVIA 622
SGG+K A+ A + +LDE +ALD + + + + R +VI+
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 623 HRLSTIRKADV---VAVLQQGSVSEI 645
+ + K+D V QQ + S+I
Sbjct: 394 LKNTMFEKSDALVGVYRQQQENSSKI 419
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 1223 SGGQKQRVAIARAF----VRKAEIMLLDEATSALDAESERSVQEALDRACSGKT-TIVVA 1277
SGG+K A+A F + + +LDE +ALD + + + + R + IV++
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 1278 HRLSTIRNAHVI 1289
+ + + +
Sbjct: 394 LKNTMFEKSDAL 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1350 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.47 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.96 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.82 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.7 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.57 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.78 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.15 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.96 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.95 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.79 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.62 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.34 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.14 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.98 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.9 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.82 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.59 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.52 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.48 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.46 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.34 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.26 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.17 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.14 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.02 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.72 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.7 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.67 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.62 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.6 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.6 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.54 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.51 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.43 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.42 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.28 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.25 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.23 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.17 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.15 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.14 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.0 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.81 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 92.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 92.75 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.69 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.64 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 92.55 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.45 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.43 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.43 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.23 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.14 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.02 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.0 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.94 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 91.91 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 91.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.9 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.89 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.61 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.6 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 91.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 91.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.42 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.39 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.35 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.33 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.0 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.0 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.98 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 90.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.97 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.96 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.88 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.78 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.69 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.68 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 90.59 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.41 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.34 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 90.33 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.31 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.31 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.29 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.22 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.2 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.18 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.12 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 90.0 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.91 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 89.87 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.85 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.76 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.66 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.58 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 89.44 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 89.42 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.39 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 89.38 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.37 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.3 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 89.17 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.13 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.11 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.05 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.03 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.02 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.91 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.91 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.85 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.67 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.6 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.54 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 88.46 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 88.44 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 88.37 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.34 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.29 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 88.25 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.23 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.15 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.14 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.11 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.08 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.07 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.06 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.98 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.94 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 87.93 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 87.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 87.8 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.79 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 87.72 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.7 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.58 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.53 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 87.47 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 87.36 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 87.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.24 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.23 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.11 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.06 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.01 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.82 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 86.81 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 86.81 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.81 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.62 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.62 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.61 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.37 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.34 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.31 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 86.29 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.24 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.17 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.11 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.02 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.01 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.99 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.87 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 85.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.69 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.61 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.59 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.47 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 85.38 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 85.35 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.29 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 85.18 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.17 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 85.02 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 84.96 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 84.93 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 84.93 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.89 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 84.89 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 84.89 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.87 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 84.85 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 84.8 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 84.56 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 84.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.52 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 84.46 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.45 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.34 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.33 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 84.28 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.26 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 84.25 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 84.16 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.13 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.11 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.1 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.07 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 84.04 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 83.77 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.76 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 83.66 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.62 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.37 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.28 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.23 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.16 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.12 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 83.11 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.03 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 82.94 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.85 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 82.81 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 82.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 82.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 82.63 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.61 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 82.52 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.49 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 82.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 82.41 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.41 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.4 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.36 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.24 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.16 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.1 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.06 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.85 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 81.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 81.81 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.81 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 81.67 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.6 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.57 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.55 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.53 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.5 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 81.42 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.18 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.12 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.07 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 80.96 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 80.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 80.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.92 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.92 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 80.9 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 80.87 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 80.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 80.78 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.67 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.54 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 80.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 80.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 80.47 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 80.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 80.46 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 80.31 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 80.24 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.12 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 80.08 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=525.43 Aligned_cols=244 Identities=48% Similarity=0.813 Sum_probs=235.7
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 99872899978998899999883211028984898999995999978899999951378995379999951789997876
Q 000689 1078 RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1078 ~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l 1157 (1350)
..+|.|+|+||+|+|++. ..++|+||||+|++||++||||+||||||||+++|.|+|+|++|+|.+||.|+++++.+++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 778879999889995999-9760644389983998999988999809999999971278630001539987530788886
Q ss_pred HCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 21118873677667545888861399999999999999982518999609987543114999989936999999999821
Q 000689 1158 RRHMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~gTIreNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL 1237 (1350)
|++++||||+|.+|++||+|||.++.++.+++++++|++.+++++++..+|+||||.++++|.+||||||||+|||||++
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34145651015689987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHH
Q ss_conf 49988898376778898989999999998549963999815912664038899994986978069467741199953599
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYAR 1317 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~~ 1317 (1350)
++|+|||||||||+||++|+..|.+.|++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|++
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~--~~~y~~ 248 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QGAYEH 248 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT--TSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCHHHH
T ss_conf 599899983765447977999999999987538889999689999985999999989999998899999868--849999
Q ss_pred HHHHHHH
Q ss_conf 9997420
Q 000689 1318 MIQLQRF 1324 (1350)
Q Consensus 1318 l~~~q~~ 1324 (1350)
||+.|+.
T Consensus 249 l~~~Q~l 255 (255)
T d2hyda1 249 LYSIQNL 255 (255)
T ss_dssp HHTTTTC
T ss_pred HHHHCCC
T ss_conf 9997479
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=519.11 Aligned_cols=240 Identities=42% Similarity=0.747 Sum_probs=232.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 28999789988999998832110289848989999959999788999999513789953799999517899978762111
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
+|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|++||.|+++++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88736776675458888613999999999999999825189996099875431149999899369999999998214998
Q 000689 1162 AIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241 (1350)
Q Consensus 1162 ~~VpQdp~LF~gTIreNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ 1241 (1350)
+||||+|++|++||+|||.++.++.++++++.+++.+++++++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHHH
Q ss_conf 88983767788989899999999985499639998159126640388999949869780694677411999535999997
Q 000689 1242 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1242 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
|||||||||+||+.+++.|.+.|++..+++|+|+||||++.++.||+|+||++|+|+|+|+|++|+++ +++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~-~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829-98789999998
Q ss_pred HH
Q ss_conf 42
Q 000689 1322 QR 1323 (1350)
Q Consensus 1322 q~ 1323 (1350)
|.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred HC
T ss_conf 13
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=512.55 Aligned_cols=243 Identities=49% Similarity=0.824 Sum_probs=233.4
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 99872899978998899999883211028984898999995999978899999951378995379999951789997876
Q 000689 1078 RLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL 1157 (1350)
Q Consensus 1078 ~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l 1157 (1350)
...|.|+|+||+|+|+++ +.++|+||||+|++||++||||+||||||||+++|+|+|+|++|+|++||.|+++++.+++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 783079999889992999-9763533289985999999999999859999999862168884689878801211106654
Q ss_pred HCCCEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 211188736776675458888613999-9999999999998251899960998754311499998993699999999982
Q 000689 1158 RRHMAIVPQEPCLFASTIYENIAYGHE-SATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~gTIreNL~~~~~-~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAl 1236 (1350)
|++++||||+|.+|++|+++|+.++.. ..++++++++++.++++++++.+|+||+|.++++|.+||||||||+|||||+
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20687995025447862024332057220899999999999817999973554410143488898499999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHH
Q ss_conf 14998889837677889898999999999854996399981591266403889999498697806946774119995359
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYA 1316 (1350)
Q Consensus 1237 L~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~ 1316 (1350)
+++|+|||||||||+||++++..|++.|+++.+++|+|+||||++.+..||+|+||++|+|+|+|+|+||+++ ++.|+
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~--~~~y~ 245 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ--HGVYA 245 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH--TSSHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCHHH
T ss_conf 5499889951644458988999999999875227889999887999985999999989999998899999868--93999
Q ss_pred HHHHHHH
Q ss_conf 9999742
Q 000689 1317 RMIQLQR 1323 (1350)
Q Consensus 1317 ~l~~~q~ 1323 (1350)
+||+.|-
T Consensus 246 ~l~~~Q~ 252 (253)
T d3b60a1 246 QLHKMQF 252 (253)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=506.55 Aligned_cols=242 Identities=43% Similarity=0.744 Sum_probs=230.6
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf 99987289997899889999988321102898489899999599997889999995137899537999995178999787
Q 000689 1077 DRLRGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS 1156 (1350)
Q Consensus 1077 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 1156 (1350)
...+|.|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++||.|+++++.++
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCCEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 621118873677667545888861399-9999999999999825189996099875431149999899369999999998
Q 000689 1157 LRRHMAIVPQEPCLFASTIYENIAYGH-ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1157 lR~~i~~VpQdp~LF~gTIreNL~~~~-~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1235 (1350)
+|++++||||+|++|++||+||+.++. +..+++++.++++.+++++++..+|+|+++.++++|.+||||||||+|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 2149988898376778898989999999998549--96399981591266403889999498697806946774119995
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDG 1313 (1350)
Q Consensus 1236 lL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g 1313 (1350)
++++|+|+|||||||+||+.++..|++.|++..+ ++|+|+||||++.+..||+|+||++|+|+|+|+|+||+++ ++
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~--~~ 243 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KG 243 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--TS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CC
T ss_conf 4568707871675765685368999999999765069899999597999985999999989999998899999859--75
Q ss_pred HHHHHHH
Q ss_conf 3599999
Q 000689 1314 CYARMIQ 1320 (1350)
Q Consensus 1314 ~y~~l~~ 1320 (1350)
.|++||+
T Consensus 244 ~y~~l~~ 250 (251)
T d1jj7a_ 244 CYWAMVQ 250 (251)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 8899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=503.57 Aligned_cols=237 Identities=43% Similarity=0.742 Sum_probs=228.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89997899889999988321102898489899999599997889999995137899537999995178999787621118
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+|+|++. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 873677667545888861399-9999999999999825189996099875431149999899369999999998214998
Q 000689 1163 IVPQEPCLFASTIYENIAYGH-ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAE 1241 (1350)
Q Consensus 1163 ~VpQdp~LF~gTIreNL~~~~-~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ 1241 (1350)
||||+|.+|++||+||+.++. ...++++++++++.+++.+++..+|++++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHHH
Q ss_conf 88983767788989899999999985499639998159126640388999949869780694677411999535999997
Q 000689 1242 IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 1321 (1350)
Q Consensus 1242 ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~~ 1321 (1350)
|||||||||+||+.++..|++.|++..+++|+|+||||++.+..||+|+||++|+|+++|+|+||+++ ++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~--~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868--9699999999
Q ss_pred HH
Q ss_conf 42
Q 000689 1322 QR 1323 (1350)
Q Consensus 1322 q~ 1323 (1350)
|.
T Consensus 238 Q~ 239 (242)
T d1mv5a_ 238 QL 239 (242)
T ss_dssp CC
T ss_pred HH
T ss_conf 85
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=477.01 Aligned_cols=246 Identities=56% Similarity=0.873 Sum_probs=234.3
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 66789753099997889889999975411027997289899998699993899999996287799748999996078888
Q 000689 419 LELDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK 498 (1350)
Q Consensus 419 ~~~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~ 498 (1350)
.+.+...|.|+++||+|+|++. +.++|+|+||+|++|++++|+|+||||||||+++|.|+++|++|+|.+||.|++.++
T Consensus 8 ~pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~ 86 (255)
T d2hyda1 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86 (255)
T ss_dssp CCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC
T ss_pred CCCCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 8777778879999889995999-976064438998399899998899980999999997127863000153998753078
Q ss_pred HHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHH
Q ss_conf 88874347888367876501289996329999999899999999433999950999832120089999896799999999
Q 000689 499 LRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIA 578 (1350)
Q Consensus 499 ~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lA 578 (1350)
..++|++++||+|+|++|++||+|||++|.+..++++++++++.+++++++..+|+|++|.++++|.+||||||||++||
T Consensus 87 ~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp HHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 88863414565101568998799998515867999999999999697999973624201033388898499999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 98327998768726677879899999999999860897699981591355303989998498798853957898326891
Q 000689 579 RAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENG 658 (1350)
Q Consensus 579 Ral~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 658 (1350)
||++++|+|+|||||||+||++++..+.+.+..+.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~--~~ 244 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--QG 244 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT--TS
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CC
T ss_conf 9985599899983765447977999999999987538889999689999985999999989999998899999868--84
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q 000689 659 VYAKLIRMQ 667 (1350)
Q Consensus 659 ~~~~l~~~~ 667 (1350)
.|++++..|
T Consensus 245 ~y~~l~~~Q 253 (255)
T d2hyda1 245 AYEHLYSIQ 253 (255)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHC
T ss_conf 999999974
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=468.82 Aligned_cols=239 Identities=45% Similarity=0.764 Sum_probs=229.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.|+|+||+|+|+.. ..++|+|+||++++|++++|+|+||||||||+++|.|+++|++|+|.+||.|+..++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88836787650128999632999999989999999943399995099983212008999989679999999998327998
Q 000689 507 GLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586 (1350)
Q Consensus 507 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~ 586 (1350)
+||+|+|++|++||+|||.++.+..++++++.+++.+++++++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHHH
Q ss_conf 76872667787989999999999986089769998159135530398999849879885395789832689189999999
Q 000689 587 ILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRM 666 (1350)
Q Consensus 587 illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~l~~~ 666 (1350)
|||||||||+||+.+++.+.+.+.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++. ++.|++|++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~-~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP-ESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST-TCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CCHHHHHHHH
T ss_conf 355647765559899999999999985899899997889999849999999899999988999998299-8789999998
Q ss_pred H
Q ss_conf 9
Q 000689 667 Q 667 (1350)
Q Consensus 667 ~ 667 (1350)
|
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=466.95 Aligned_cols=244 Identities=55% Similarity=0.852 Sum_probs=232.3
Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH
Q ss_conf 78975309999788988999997541102799728989999869999389999999628779974899999607888888
Q 000689 421 LDSVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLR 500 (1350)
Q Consensus 421 ~~~~~g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~ 500 (1350)
.+...|.|+|+||+|+|+++ +.++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.+||.|++.++..
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 67783079999889992999-97635332899859999999999998599999998621688846898788012111066
Q ss_pred HHHCCEEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 87434788836787650128999632999-99998999999994339999509998321200899998967999999999
Q 000689 501 WLRQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 501 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lAR 579 (1350)
++|++++||+|+|++|++|+++|+.++.+ ..++++++++++.+++++++..+|+|++|.++++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCH
Q ss_conf 83279987687266778798999999999998608976999815913553039899984987988539578983268918
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659 (1350)
Q Consensus 580 al~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 659 (1350)
||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~--~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ--HGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH--TSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCH
T ss_conf 995499889951644458988999999999875227889999887999985999999989999998899999868--939
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000689 660 YAKLIRMQ 667 (1350)
Q Consensus 660 ~~~l~~~~ 667 (1350)
|+++++.|
T Consensus 244 y~~l~~~Q 251 (253)
T d3b60a1 244 YAQLHKMQ 251 (253)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=460.98 Aligned_cols=241 Identities=42% Similarity=0.742 Sum_probs=228.0
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 97530999978898899999754110279972898999986999938999999962877997489999960788888887
Q 000689 423 SVSGLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL 502 (1350)
Q Consensus 423 ~~~g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~ 502 (1350)
..+|.|+|+||+|+||++++.++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.|+..++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 434788836787650128999632999-9999899999999433999950999832120089999896799999999983
Q 000689 503 RQQIGLVSQEPALFATTIKENILLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal 581 (1350)
|++++||+|+|++|++||+||+.+|.. ..+.+++..+++.+++++++..+|+|+++.++++|.+||||||||++||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCH
Q ss_conf 279987687266778798999999999998608--976999815913553039899984987988539578983268918
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGV 659 (1350)
Q Consensus 582 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~ 659 (1350)
+++|+|+|||||||+||+.++..+++.+.++.+ ++|+|+||||++.+..||+|++|++|+|+++|+|+||+++ ++.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~--~~~ 244 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK--KGC 244 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--TSH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CCH
T ss_conf 568707871675765685368999999999765069899999597999985999999989999998899999859--758
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000689 660 YAKLIR 665 (1350)
Q Consensus 660 ~~~l~~ 665 (1350)
|++|++
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=457.65 Aligned_cols=237 Identities=49% Similarity=0.782 Sum_probs=225.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.|+++||+|+|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+++..++|++|
T Consensus 1 mle~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHE
T ss_conf 97999889987999--8414225899859999999999999799999999996098987798899884424678887436
Q ss_pred EEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88836787650128999632999-99998999999994339999509998321200899998967999999999832799
Q 000689 507 GLVSQEPALFATTIKENILLGRP-DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 507 ~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 585 (1350)
+||+|+|++|++||+||+.++.. ..++++++++++.+.+.+++..+|+++++.++++|.+|||||||||+||||++++|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 79756654578534543012445554235677899999755542037421015236878987999999999999985299
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHH
Q ss_conf 87687266778798999999999998608976999815913553039899984987988539578983268918999999
Q 000689 586 AILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLIR 665 (1350)
Q Consensus 586 ~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~l~~ 665 (1350)
+|+|||||||+||+.++..+++.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|.+++.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~--~~~y~~l~~ 236 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT--HPLYAKYVS 236 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH--CHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC--CHHHHHHHH
T ss_conf 899965886556988999998878887179989999787999984999999989999999999999868--969999999
Q ss_pred HH
Q ss_conf 99
Q 000689 666 MQ 667 (1350)
Q Consensus 666 ~~ 667 (1350)
.|
T Consensus 237 ~Q 238 (242)
T d1mv5a_ 237 EQ 238 (242)
T ss_dssp CC
T ss_pred HH
T ss_conf 98
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=417.03 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=201.9
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf 87289997899889999988321102898489899999599997889999995137899537999995178999787621
Q 000689 1080 RGEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR 1159 (1350)
Q Consensus 1080 ~g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 1159 (1350)
.+.|.|+|++|.+ .|||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 8967999769899-----7677375999859999999989998299999999579747882899999-------------
Q ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 11887367766754588886139999999999999998251899960998754311499998993699999999982149
Q 000689 1160 HMAIVPQEPCLFASTIYENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK 1239 (1350)
Q Consensus 1160 ~i~~VpQdp~LF~gTIreNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~ 1239 (1350)
+++|+||++.+|++||+|||.++.. .++.+.+.+++.+.+.+++..+|+++++.++++|.+||||||||++||||++++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999816430267603214203334-560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHH
Q ss_conf 988898376778898989999999-9985499639998159126640388999949869780694677411999535999
Q 000689 1240 AEIMLLDEATSALDAESERSVQEA-LDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1240 ~~ILiLDEaTSaLD~~te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~~l 1318 (1350)
|+|||||||||+||+.++..|.+. +....+++|+|+||||++.++.||||++|++|+|+++|+|+||++. .+.|++.
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~--~~~~~~~ 254 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSK 254 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--CHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC--CCHHHHH
T ss_conf 63513338554489899999999999886289999999252899985999999989999998789999605--9489998
Q ss_pred HHH
Q ss_conf 997
Q 000689 1319 IQL 1321 (1350)
Q Consensus 1319 ~~~ 1321 (1350)
+..
T Consensus 255 ~~~ 257 (281)
T d1r0wa_ 255 LMG 257 (281)
T ss_dssp HHT
T ss_pred HCC
T ss_conf 729
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-45 Score=386.81 Aligned_cols=218 Identities=30% Similarity=0.461 Sum_probs=195.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 30999978898899999754110279972898999986999938999999962877997489999960788888887434
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~ 505 (1350)
+.|+|++++|. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 78883678765012899963299999998999999994339999509998321200899998967999999999832799
Q 000689 506 IGLVSQEPALFATTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNP 585 (1350)
Q Consensus 506 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~ 585 (1350)
++|++|+|++|++||+||+.+|.. .+..++..+++.+.+..++..+|+++++.++++|.+||||||||++|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999816430267603214203334-5605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHH
Q ss_conf 87687266778798999999999-99860897699981591355303989998498798853957898326891899999
Q 000689 586 AILLLDEATSALDSESEKLVQEA-LDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELIAKGENGVYAKLI 664 (1350)
Q Consensus 586 ~illLDE~ts~lD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~l~ 664 (1350)
+|||||||||+||+.++..+.+. +..+..++|+|+|||+++.+..||+|++|++|++++.|+|+||+.. .+.|...+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~--~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL--RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH--CHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC--CCHHHHHH
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605--94899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-44 Score=374.29 Aligned_cols=219 Identities=31% Similarity=0.533 Sum_probs=189.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 28999789988999998832110289848989999959999788999999513789953799999517899978762111
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|++ ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+.+.. |++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHCCCCC--CCCHHHH----HHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88736776675-458888613999--9999999----9999982518999609987543114999989936999999999
Q 000689 1162 AIVPQEPCLFA-STIYENIAYGHE--SATESEI----IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIAR 1234 (1350)
Q Consensus 1162 ~~VpQdp~LF~-gTIreNL~~~~~--~~s~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLAR 1234 (1350)
+||||++.+|. .|++||+.++.. ..+.+++ .++++..++.++ .......||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHH
T ss_conf 9980033534222099999999987399999999999999987598556-----------60995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 8214998889837677889898999999999854--99639998159126640-38899994986978069467741199
Q 000689 1235 AFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNP 1311 (1350)
Q Consensus 1235 AlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~~~ 1311 (1350)
|++.+|+||+||||||+||+.+...|++.|+++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+|++++++ |
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P 228 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-P 228 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC-C
T ss_conf 640499824306886668989998999999999873198079994899999986999999989999998599999868-9
Q ss_pred CCHHHH
Q ss_conf 953599
Q 000689 1312 DGCYAR 1317 (1350)
Q Consensus 1312 ~g~y~~ 1317 (1350)
...|.+
T Consensus 229 ~~~~~~ 234 (239)
T d1v43a3 229 NSVFVA 234 (239)
T ss_dssp SBHHHH
T ss_pred CCHHHH
T ss_conf 998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-44 Score=376.16 Aligned_cols=216 Identities=30% Similarity=0.537 Sum_probs=189.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89997899889999988321102898489899999599997889999995137899537999995178999787621118
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1162 (1350)
|+++|++++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHCCCC---CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 87367766754-5888861399---9999999999999825189996099875431149999899369999999998214
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGH---ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~---~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~ 1238 (1350)
||||++.+|.. |++||+.++. ....++++.++++..++.++.++. ...||||||||++||||++.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCC-----------HHHCCHHHHCCHHHHHHHHC
T ss_conf 1512111174665778888877640553899999999982565557589-----------55479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCCHH
Q ss_conf 998889837677889898999999999854--99639998159126640-388999949869780694677411999535
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315 (1350)
Q Consensus 1239 ~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y 1315 (1350)
+|+|||||||||+||+.+...+++.|++.. .|.|+|+|||+++.+.. ||||++|++|++++.|+|++++++ |...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~-P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK-PVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS-CCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCHH
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868-99879
Q ss_pred H
Q ss_conf 9
Q 000689 1316 A 1316 (1350)
Q Consensus 1316 ~ 1316 (1350)
.
T Consensus 224 v 224 (229)
T d3d31a2 224 V 224 (229)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-44 Score=376.69 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=190.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89997899889999988321102898489899999599997889999995137899537999995178999787621118
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1162 (1350)
|+++||+++|.+ ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.++.+.+. .|++|+
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 999999999899---999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCC--CC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87367766754-588886139999--99----999999999825189996099875431149999899369999999998
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHES--AT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA 1235 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~--~s----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARA 1235 (1350)
||||+|.+|.. |++||+.++... .+ ++.+.++++..++.++..+.| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 34334202643337889789998759988999999999997578865664896-----------5699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 214998889837677889898999999999854--99639998159126640-388999949869780694677411999
Q 000689 1236 FVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPD 1312 (1350)
Q Consensus 1236 lL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~~~~ 1312 (1350)
++.+|++|+|||||++||+.+...|++.|++.. .|+|+|+|||++..+.. ||||++|++|+|++.|+|+|++++ |.
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~-P~ 223 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-PA 223 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CS
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC-CC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738-99
Q ss_pred CHHHH
Q ss_conf 53599
Q 000689 1313 GCYAR 1317 (1350)
Q Consensus 1313 g~y~~ 1317 (1350)
..|.+
T Consensus 224 ~~~v~ 228 (232)
T d2awna2 224 DRFVA 228 (232)
T ss_dssp BHHHH
T ss_pred CHHHH
T ss_conf 97999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-44 Score=378.40 Aligned_cols=223 Identities=26% Similarity=0.460 Sum_probs=190.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf 289997899889999988321102898489899999599997889999995137899537999995178999---78762
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN---LKSLR 1158 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR 1158 (1350)
.|+++||+++|+.. +..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCCEEECCCCCCCCC-CHHHHHCCCCC--CCCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 111887367766754-58888613999--99999----999999982518999609987543114999989936999999
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGHE--SATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~~--~~s~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrla 1231 (1350)
++++||+|++.||.. |++||+.++.. ..+.+ .+.++++..++.++.... ...||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 45147730433466665777766556761379999999999998665917666489-----------5459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998214998889837677889898999999999854--99639998159126640-38899994986978069467741
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 LARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~ 1308 (1350)
||||+..+|+|||+||||++||+.+...+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CCCCCHHHH
Q ss_conf 199953599
Q 000689 1309 NNPDGCYAR 1317 (1350)
Q Consensus 1309 ~~~~g~y~~ 1317 (1350)
+ |...|.+
T Consensus 231 ~-P~~~~~~ 238 (242)
T d1oxxk2 231 N-PVSIQVA 238 (242)
T ss_dssp S-CSSHHHH
T ss_pred C-CCCHHHH
T ss_conf 8-9997998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-44 Score=377.58 Aligned_cols=222 Identities=31% Similarity=0.511 Sum_probs=190.5
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf 899978998899999-88321102898489899999599997889999995137899537999995178999787---62
Q 000689 1083 VELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS---LR 1158 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 1158 (1350)
|+++||+++|+.+.. ..+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+..++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEECCCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 111887367766754-5888861399--9999----99999999982518999609987543114999989936999999
Q 000689 1159 RHMAIVPQEPCLFAS-TIYENIAYGH--ESAT----ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVA 1231 (1350)
Q Consensus 1159 ~~i~~VpQdp~LF~g-TIreNL~~~~--~~~s----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrla 1231 (1350)
+++++|||++.+|.. |++||+.++. ...+ ++.+.++++.+++.++..+. ...||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-----------~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-----------BSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355489-----------4349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998214998889837677889898999999999854-9-9639998159126640-38899994986978069467741
Q 000689 1232 IARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-S-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLK 1308 (1350)
Q Consensus 1232 LARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~-~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~ 1308 (1350)
||||+..+|++||+||||++||+.+...|++.|+++. + |.|+|+|||++..+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred CCCCCHHH
Q ss_conf 19995359
Q 000689 1309 NNPDGCYA 1316 (1350)
Q Consensus 1309 ~~~~g~y~ 1316 (1350)
+ |...|.
T Consensus 231 ~-P~~~~t 237 (240)
T d3dhwc1 231 H-PKTPLA 237 (240)
T ss_dssp S-SCCTTT
T ss_pred C-CCCHHH
T ss_conf 8-998577
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.1e-44 Score=376.86 Aligned_cols=221 Identities=31% Similarity=0.512 Sum_probs=189.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf 289997899889999988321102898489899999599997889999995137899537999995178999787----6
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKS----L 1157 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~----l 1157 (1350)
.|+++||+++|.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHCCCC--CCCCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2111887367766754-5888861399--999999----99999998251899960998754311499998993699999
Q 000689 1158 RRHMAIVPQEPCLFAS-TIYENIAYGH--ESATES----EIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRV 1230 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~g-TIreNL~~~~--~~~s~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrl 1230 (1350)
|++++||||+|.||.. |++||+.++. ...+.+ .+.+.++..++.++..+. ...||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC-----------HHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996676299-----------334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99998214998889837677889898999999999854-9-9639998159126640-3889999498697806946774
Q 000689 1231 AIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-S-GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1231 aLARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~-~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl 1307 (1350)
+||||++.+|+||||||||++||+.+...|++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCCCCCHHHH
Q ss_conf 1199953599
Q 000689 1308 KNNPDGCYAR 1317 (1350)
Q Consensus 1308 ~~~~~g~y~~ 1317 (1350)
.+ |...|.+
T Consensus 229 ~~-P~~~~~~ 237 (240)
T d1g2912 229 DK-PANTFVA 237 (240)
T ss_dssp HS-CSBHHHH
T ss_pred HC-CCCHHHH
T ss_conf 28-9998989
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-43 Score=367.09 Aligned_cols=211 Identities=30% Similarity=0.498 Sum_probs=175.0
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf 899978998899999-883211028984898999995999978899999951378995379999951789997876----
Q 000689 1083 VELKHVDFSYPSRPD-IPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSL---- 1157 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l---- 1157 (1350)
|+++||+++|+.... ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.|+..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEECCCCCCCCC-CHHHHHCCCC-----CCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 2111887367766754-5888861399-----9999999----9999998251899960998754311499998993699
Q 000689 1158 RRHMAIVPQEPCLFAS-TIYENIAYGH-----ESATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQK 1227 (1350)
Q Consensus 1158 R~~i~~VpQdp~LF~g-TIreNL~~~~-----~~~s~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQk 1227 (1350)
|++|+||+|+|.+|.. |++||+.++. ...+.++ +.+.++..++.+ . .......+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-------R---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG-------G---GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHH-------H---HHCCCHHHCCHHHH
T ss_conf 5557788041241768668887757888722478999999999999887624234-------5---53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999998214998889837677889898999999999854--99639998159126640388999949869780694
Q 000689 1228 QRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSH 1303 (1350)
Q Consensus 1228 QrlaLARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~ 1303 (1350)
||++||||+..+|+||+||||||+||+.+...|++.|+++. .|+|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.6e-43 Score=365.80 Aligned_cols=222 Identities=29% Similarity=0.499 Sum_probs=188.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf 289997899889999988321102898489899999599997889999995137899537999995178999--------
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYN-------- 1153 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1153 (1350)
.|+++|++++|.+ ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCCEEECCCCCCCC-CCHHHHHCCC---CCCCCH----HHHHHHHHHHCCHHHHH-CCCCCCCCCCCCCC
Q ss_conf -----7876211188736776675-4588886139---999999----99999999825189996-09987543114999
Q 000689 1154 -----LKSLRRHMAIVPQEPCLFA-STIYENIAYG---HESATE----SEIIEAARLANADKFIS-SLPDGYKTFVGERG 1219 (1350)
Q Consensus 1154 -----l~~lR~~i~~VpQdp~LF~-gTIreNL~~~---~~~~s~----~ei~~al~~a~l~~~I~-~lp~Gldt~vge~G 1219 (1350)
...+|+++++|+|+|.+|. -|++||+.++ ....+. +.+.++++.+++.+... +.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEE
Q ss_conf 9899369999999998214998889837677889898999999999854-99639998159126640-388999949869
Q 000689 1220 VQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKV 1297 (1350)
Q Consensus 1220 ~~LSgGQkQrlaLARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vL~~G~I 1297 (1350)
.+|||||+||++||||+..+|++|||||||++||+.+...|++.|+++. +|+|+|+|||++..+.. ||||+||.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCCCCCHHHHH
Q ss_conf 780694677411999535999
Q 000689 1298 AELGSHSHLLKNNPDGCYARM 1318 (1350)
Q Consensus 1298 ve~Gt~~eLl~~~~~g~y~~l 1318 (1350)
++.|+|+|++.+ |...|.+-
T Consensus 228 v~~g~~~ev~~~-P~~~~~~~ 247 (258)
T d1b0ua_ 228 EEEGDPEQVFGN-PQSPRLQQ 247 (258)
T ss_dssp EEEECHHHHHHS-CCSHHHHH
T ss_pred EEECCHHHHHHC-CCCHHHHH
T ss_conf 998499999838-99999999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-42 Score=357.91 Aligned_cols=217 Identities=27% Similarity=0.454 Sum_probs=190.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.|+...+.. ++++
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHHHCCCCC--CCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 888367876501-289996329999--99989999999943399995099983212008999989679999999998327
Q 000689 507 GLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK 583 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~ 583 (1350)
|||+|+|.+|+. |++||+.++... .+.++..+ .+.+.++.+ |+....+.....||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 99800335342220999999999873999999999-----999999875--98556609954699999889999766404
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998768726677879899999999999860--89769998159135530-3989998498798853957898326
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 584 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
+|++|+|||||++||+.+...+.+.+.++. .|+|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.1e-42 Score=356.02 Aligned_cols=215 Identities=34% Similarity=0.556 Sum_probs=186.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.|+++|++++|++ .+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.|+.+.+.. |+++
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~i 74 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTC
T ss_pred CEEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCC
T ss_conf 9899989999499----788433789879989999989998299999999647688878899956734652165--7405
Q ss_pred EEECCCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 888367876501-28999632999---99998999999994339999509998321200899998967999999999832
Q 000689 507 GLVSQEPALFAT-TIKENILLGRP---DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~ 582 (1350)
|||+|++.+|+. |++||+.++.. ....+++.++++.. |+.........+||||||||++|||||+
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------CCHHHHHCCHHHCCHHHHCCHHHHHHHH
T ss_conf 61512111174665778888877640553899999999982-----------5655575895547999840140304344
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 7998768726677879899999999999860--89769998159135530-3989998498798853957898326891
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENG 658 (1350)
Q Consensus 583 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~ 658 (1350)
.+|++|||||||++||+.+...+.+.+.++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++++++.+.
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~ 222 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEG 222 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTT
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCH
T ss_conf 3677144347876799899999999999998647968999749999999969999999799999986999998689987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.3e-42 Score=358.78 Aligned_cols=222 Identities=29% Similarity=0.435 Sum_probs=190.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 099997889889999975411027997289899998699993899999996287799748999996078888---88874
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK---LRWLR 503 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~---~~~~r 503 (1350)
.|+++|++++|+.. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCCC--CCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 347888367876501-289996329999--99989999999943399995099983212008999989679999999998
Q 000689 504 QQIGLVSQEPALFAT-TIKENILLGRPD--ADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARA 580 (1350)
Q Consensus 504 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARa 580 (1350)
+++|||+|+|.||+. |++|||.++... .+.++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHC--CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 451477304334666657777665567613799999999-----99998665--91766648954599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 327998768726677879899999999999860--89769998159135530-39899984987988539578983268
Q 000689 581 MLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGE 656 (1350)
Q Consensus 581 l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~ 656 (1350)
|..+|++||+||||++||+.+...+.+.++++. .+.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++.
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~ 233 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 7604661454478667998998899899999986359879999799999999699999998999999869999986899
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.7e-42 Score=356.82 Aligned_cols=219 Identities=27% Similarity=0.458 Sum_probs=186.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 099997889889999975411027997289899998699993899999996287799748999996078888888----7
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW----L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~----~ 502 (1350)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 4347888367876501-28999632999--99998999999994339999509998321200899998967999999999
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIAR 579 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lAR 579 (1350)
|+++|||+|+|.+|+. |++||+.++.. ..+.++..+.. ..+.+.+ |+.........+||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v--~~~l~~~-----~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV--REVAELL-----GLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH--HHHHHHH-----TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHC-----CCHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 25512002212223101166763306877299989999999--9999875-----9966762993349999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8327998768726677879899999999999860-8-9769998159135530-3989998498798853957898326
Q 000689 580 AMLKNPAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 580 al~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
||+.+|++|+|||||++||+.+...+.+.+.++. + |.|+|+|||+++.+.. ||+|++|++|++++.|+++|++.++
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P 231 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9826998898258876569899989999999998636988999959999999969999999899999985999998289
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-42 Score=357.09 Aligned_cols=216 Identities=28% Similarity=0.458 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997889889999975411027997289899998699993899999996287799748999996078888888743478
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 507 (1350)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++.+.+.. ++.||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 999999999899---9998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCC--CHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88367876501-2899963299999--99899999999433999950999832120089999896799999999983279
Q 000689 508 LVSQEPALFAT-TIKENILLGRPDA--DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKN 584 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~ 584 (1350)
||+|+|.+|.. |++||+.++.... +.++..+ .+.+.++.+ ++.........+||||||||++|||||+.+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp EECSSCCC---------------------CHHHH-----HHHHHHHHC-----------------------CHHHHHHTC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 3433420264333788978999875998899999-----999999757--886566489656999999999999997039
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 98768726677879899999999999860--89769998159135530-3989998498798853957898326
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 585 ~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
|++++|||||++||+.+...+++.+.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++|++.++
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 98899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.1e-41 Score=348.36 Aligned_cols=228 Identities=25% Similarity=0.416 Sum_probs=187.1
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 72899978998899999883211028984898999995999978899999951378995379999951789997876211
Q 000689 1081 GEVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRH 1160 (1350)
Q Consensus 1081 g~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 1160 (1350)
|.|+++|++.+|.. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+. ...+|++
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 97899958999999---9998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCC--CCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1887367766754-5888861399--999999999999982518999609987543114999989936999999999821
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGH--ESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~--~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL 1237 (1350)
++||||++.+|.. |++||+.+.. ...+.+++.+..+.+ ++.+ +++........+||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCCHH
Q ss_conf 4998889837677889898999999999854-99639998159126640-388999949869780694677411999535
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGCY 1315 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y 1315 (1350)
.+|+||||||||++||+.+.+.+++.+++.. .|+|+|++||+++.+.. ||||++|++|+|++.|+|++|.++......
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~ 229 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHH
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865287669
Q ss_pred HHHH
Q ss_conf 9999
Q 000689 1316 ARMI 1319 (1350)
Q Consensus 1316 ~~l~ 1319 (1350)
.+.+
T Consensus 230 ~~~f 233 (238)
T d1vpla_ 230 EEVF 233 (238)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.3e-42 Score=356.43 Aligned_cols=218 Identities=23% Similarity=0.397 Sum_probs=172.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 289997899889999988321102898489899999599997889999995137899537999995178999787621-1
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-H 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~ 1160 (1350)
-++++||+.+|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|+++|.|+...+....++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred CEEECCCCCCCC-CCHHHHHCCCCCC---------------CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 188736776675-4588886139999---------------999999999998251899960998754311499998993
Q 000689 1161 MAIVPQEPCLFA-STIYENIAYGHES---------------ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSG 1224 (1350)
Q Consensus 1161 i~~VpQdp~LF~-gTIreNL~~~~~~---------------~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1224 (1350)
|+++||+|.+|. -|++||+.++... ..+++..+. +.+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-----AFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHH-----HHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 87257764247887423214301333034504566542135328999999-----99998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 6999999999821499888983767788989899999999985-499639998159126640-38899994986978069
Q 000689 1225 GQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGS 1302 (1350)
Q Consensus 1225 GQkQrlaLARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt 1302 (1350)
|||||++||||+..+|++|||||||++||+.+.+.|++.|++. .+|+|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHC
Q ss_conf 4677411
Q 000689 1303 HSHLLKN 1309 (1350)
Q Consensus 1303 ~~eLl~~ 1309 (1350)
|+|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.3e-41 Score=351.82 Aligned_cols=219 Identities=24% Similarity=0.448 Sum_probs=178.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf 289997899889999988321102898489899999599997889999995137899537999995178999787621-1
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRR-H 1160 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~ 1160 (1350)
-++++|++++|.+ ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 7999618999899---8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1887367766754-588886139999-99999999999825189996099875431149999899369999999998214
Q 000689 1161 MAIVPQEPCLFAS-TIYENIAYGHES-ATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR 1238 (1350)
Q Consensus 1161 i~~VpQdp~LF~g-TIreNL~~~~~~-~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~ 1238 (1350)
++|+||++.+|.. |++||+.++... ...++..+.++.+- +. + .+++........+||||||||++||||++.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HH---H-HCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--87---4-176888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 998889837677889898999999999854-99639998159126640-388999949869780694677411
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1239 ~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~ 1309 (1350)
+|++|+|||||++||+.+...+++.|+++. +|+|+|+|+|+++.+.. ||||+||++|++++.|+|+|++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-42 Score=355.17 Aligned_cols=218 Identities=36% Similarity=0.567 Sum_probs=185.9
Q ss_pred EEEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---H
Q ss_conf 0999978898899999-75411027997289899998699993899999996287799748999996078888888---7
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRW---L 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~---~ 502 (1350)
.|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.|+...+.+. +
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHHH----HHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHH
Q ss_conf 4347888367876501-28999632999--999989----9999999433999950999832120089999896799999
Q 000689 503 RQQIGLVSQEPALFAT-TIKENILLGRP--DADLNE----IEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRI 575 (1350)
Q Consensus 503 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~----~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri 575 (1350)
|+++|||+|+|.+|+. |++||+.++.. ..+.++ +.+.++.+ |+.........+||||||||+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRV 149 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCCHHHHCCHHHCCHHHHHHH
T ss_conf 416643022522279964999999999984999899999999999976-----------990355489434999999899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99998327998768726677879899999999999860-8-9769998159135530-3989998498798853957898
Q 000689 576 AIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-I-GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELI 652 (1350)
Q Consensus 576 ~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~ 652 (1350)
+|||||..+|++||+||||++||+.+...+++.+.++. + |.|+|+|||++..+.. ||+|++|++|+|++.|++++++
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 98640105898687446556589888567999999998646978999838999999869999999799999987999997
Q ss_pred HCC
Q ss_conf 326
Q 000689 653 AKG 655 (1350)
Q Consensus 653 ~~~ 655 (1350)
.++
T Consensus 230 ~~P 232 (240)
T d3dhwc1 230 SHP 232 (240)
T ss_dssp CSS
T ss_pred HCC
T ss_conf 289
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-41 Score=354.06 Aligned_cols=215 Identities=33% Similarity=0.475 Sum_probs=178.4
Q ss_pred EEEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH---
Q ss_conf 0999978898899999-754110279972898999986999938999999962877997489999960788888887---
Q 000689 427 LIELKHVDFSYPSRPE-VRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWL--- 502 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~--- 502 (1350)
.|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++...+.+.+
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred -HCCEEEECCCCCCCCC-CHHHHHHCCCC-----CCCHHHHHHHHHHHCHHHHHHCCCCCCCC-HHCCCCCCCCHHHHHH
Q ss_conf -4347888367876501-28999632999-----99998999999994339999509998321-2008999989679999
Q 000689 503 -RQQIGLVSQEPALFAT-TIKENILLGRP-----DADLNEIEEAARVANAYSFIIKLPDGFDT-QVRERGVQLSGGQKQR 574 (1350)
Q Consensus 503 -r~~i~~v~Q~~~lf~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGqkqr 574 (1350)
|++||||+|+|.+++. |++||+.++.. ..+.++..+. +.+.+..+ |+.. .......+||||||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf 25557788041241768668887757888722478999999999-----99988762--423455348802389999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 999998327998768726677879899999999999860--89769998159135530398999849879885395
Q 000689 575 IAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTH 648 (1350)
Q Consensus 575 i~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~~ 648 (1350)
++|||||+.+|++|+||||||+||+.+...+++.+.++. .++|+|+|||+++.+..||+|++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-40 Score=343.32 Aligned_cols=228 Identities=31% Similarity=0.527 Sum_probs=187.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 099997889889999975411027997289899998699993899999996287799748999996078888--------
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLK-------- 498 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~-------- 498 (1350)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCCC-CHHHHHHCCC---CCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHH-CCCCCCCC
Q ss_conf -----88874347888367876501-2899963299---99999899999999433999950999832120-08999989
Q 000689 499 -----LRWLRQQIGLVSQEPALFAT-TIKENILLGR---PDADLNEIEEAARVANAYSFIIKLPDGFDTQV-RERGVQLS 568 (1350)
Q Consensus 499 -----~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~-~~~g~~LS 568 (1350)
...+|+++|||+|+|.+|+. |+.||+.++. ...+..+..+. +.+.+..+ |+.... .....+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCCHHHHCCCCCCCC
T ss_conf 51767999745448998332314110102136565787629998999999-----99999982--995244306822056
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEC
Q ss_conf 679999999998327998768726677879899999999999860-89769998159135530-3989998498798853
Q 000689 569 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIG 646 (1350)
Q Consensus 569 gGqkqri~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g 646 (1350)
||||||++|||||..+|+++||||||++||+.+...+.+.++++. +|+|+|+|||+++.+.. ||||++|.+|+|++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 77888989999984399878852455568878888998765541036883389948999999869999999799999984
Q ss_pred CHHHHHHCCCCCHHHHHH
Q ss_conf 957898326891899999
Q 000689 647 THDELIAKGENGVYAKLI 664 (1350)
Q Consensus 647 ~~~~l~~~~~~~~~~~l~ 664 (1350)
+++|++.++.+.....++
T Consensus 232 ~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 232 DPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp CHHHHHHSCCSHHHHHHH
T ss_pred CHHHHHHCCCCHHHHHHH
T ss_conf 999998389999999988
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5e-40 Score=340.82 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=176.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf 89997899889999988321102898489899999599997889999995137899537999995178999787621118
Q 000689 1083 VELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMA 1162 (1350)
Q Consensus 1083 I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 1162 (1350)
+++ ++.-+|.+ ..+ |+||++. ||.++|+||||||||||+++|.|+.+|++|+|.+||.|+.+++.. |++|+
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899----999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCCCCHHH----HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87367766754-58888613999999999----99999982518999609987543114999989936999999999821
Q 000689 1163 IVPQEPCLFAS-TIYENIAYGHESATESE----IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV 1237 (1350)
Q Consensus 1163 ~VpQdp~LF~g-TIreNL~~~~~~~s~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL 1237 (1350)
||||++.+|.. |++||+.++-...+..+ +.++++..++.+ ........||||||||++||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-----------~~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 252314435220155766653233677889999999998638375-----------665794448999989999987775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCCH
Q ss_conf 49988898376778898989999999998549--9639998159126640-38899994986978069467741199953
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACS--GKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKNNPDGC 1314 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~ 1314 (1350)
.+|+||+||||||+||+.+...+++.|++..+ |.|+|+|||+++.+.. ||||++|++|++++.|+|+|+++. ++..
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~-~~~~ 221 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA-KNGE 221 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-CCSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC-CCHH
T ss_conf 167706752865558879999999999999874397699981899999996999999989999999069998329-9889
Q ss_pred HHHHHH
Q ss_conf 599999
Q 000689 1315 YARMIQ 1320 (1350)
Q Consensus 1315 y~~l~~ 1320 (1350)
.++++.
T Consensus 222 v~~fl~ 227 (240)
T d2onka1 222 VAEFLS 227 (240)
T ss_dssp HHHHGG
T ss_pred HHHHHC
T ss_conf 999857
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.2e-40 Score=339.06 Aligned_cols=218 Identities=25% Similarity=0.412 Sum_probs=185.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 099997889889999975411027997289899998699993899999996287799748999996078888888743-4
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQ-Q 505 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~-~ 505 (1350)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++...++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCCCC---------------CHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCH
Q ss_conf 7888367876501-2899963299999---------------99899999999433999950999832120089999896
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRPDA---------------DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSG 569 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~~~---------------~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 569 (1350)
|+++||+|.+|.. |++||+.++.... ..++..+ .+.+.++.+ ++.........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 79999999998327998768726677879899999999999860-89769998159135530-39899984987988539
Q 000689 570 GQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 570 Gqkqri~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~ 647 (1350)
|||||++|||||..+|++|||||||++||+.+.+.+.+.++++. +|+|+++|+|+++.+.. ||+|++|++|++++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHC
Q ss_conf 5789832
Q 000689 648 HDELIAK 654 (1350)
Q Consensus 648 ~~~l~~~ 654 (1350)
++|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-39 Score=337.76 Aligned_cols=220 Identities=26% Similarity=0.471 Sum_probs=185.0
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH-C
Q ss_conf 309999788988999997541102799728989999869999389999999628779974899999607888888874-3
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLR-Q 504 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r-~ 504 (1350)
-.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+...+.+..+ .
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred CEEEECCCCCCCCC-CHHHHHHCCCCCC-CHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 47888367876501-2899963299999-998999999994339999509998321200899998967999999999832
Q 000689 505 QIGLVSQEPALFAT-TIKENILLGRPDA-DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 505 ~i~~v~Q~~~lf~~-ti~eNi~~g~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~ 582 (1350)
.++|+||++.+|+. |++||+.++.... ..+...+..... .+. + .++.........+||||||||++|||||+
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~---~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSL---F-PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHH---C-HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHH---H-HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999--987---4-17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 7998768726677879899999999999860-89769998159135530-398999849879885395789832
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 583 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
.+|++|+|||||++||+.+...+.+.++++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++|+..+
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-39 Score=335.33 Aligned_cols=219 Identities=27% Similarity=0.432 Sum_probs=188.6
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 30999978898899999754110279972898999986999938999999962877997489999960788888887434
Q 000689 426 GLIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQ 505 (1350)
Q Consensus 426 g~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~ 505 (1350)
|.|+++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.|+.+ .....|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 7888367876501-28999632999--99998999999994339999509998321200899998967999999999832
Q 000689 506 IGLVSQEPALFAT-TIKENILLGRP--DADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAML 582 (1350)
Q Consensus 506 i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~ 582 (1350)
++|+||++.+|.. |++||+.+... ..+..++.+..+.. .+.. ++.........+||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--l~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA--TEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHC-----CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999--9867-----9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 7998768726677879899999999999860-89769998159135530-3989998498798853957898326
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKG 655 (1350)
Q Consensus 583 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 655 (1350)
.+|++++|||||++||+.+.+.+.+.++++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 599988733798897989999999999999965998999959899999969999999899999992899998652
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.2e-38 Score=325.00 Aligned_cols=220 Identities=32% Similarity=0.489 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 99997889889999975411027997289899998699993899999996287799748999996078888888743478
Q 000689 428 IELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIG 507 (1350)
Q Consensus 428 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 507 (1350)
+++ ++..+|++ . .+ |+||++. +++++|+||||||||||+++|.|+++|++|+|.++|.|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88367876501-28999632999999989999999943399995099983212008999989679999999998327998
Q 000689 508 LVSQEPALFAT-TIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPA 586 (1350)
Q Consensus 508 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~ 586 (1350)
||+|++.+|+. ||+||+.|+....+..+..+ .+.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 25231443522015576665323367788999-----999999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCCCHHHHH
Q ss_conf 7687266778798999999999998608--9769998159135530-398999849879885395789832689189999
Q 000689 587 ILLLDEATSALDSESEKLVQEALDRFMI--GRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAKGENGVYAKL 663 (1350)
Q Consensus 587 illLDE~ts~lD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~l 663 (1350)
+++||||||+||+.+...+.+.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++|+++.+ +...+.+
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~-~~~v~~f 225 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK-NGEVAEF 225 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC-CSSHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC-CHHHHHH
T ss_conf 067528655588799999999999998743976999818999999969999999899999990699983299-8899998
Q ss_pred H
Q ss_conf 9
Q 000689 664 I 664 (1350)
Q Consensus 664 ~ 664 (1350)
+
T Consensus 226 l 226 (240)
T d2onka1 226 L 226 (240)
T ss_dssp G
T ss_pred H
T ss_conf 5
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-37 Score=319.72 Aligned_cols=209 Identities=26% Similarity=0.416 Sum_probs=181.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 28999789988999998832110289848989999959999788999999513789953799999517899978762111
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
-++++||+.+| +|+||||+|++||.+||+|+||||||||+++|.|++ |.+|+|.++|.|+..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88736776-675458888613999999-999999999825189996099875431149999899369999999998214-
Q 000689 1162 AIVPQEPC-LFASTIYENIAYGHESAT-ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVR- 1238 (1350)
Q Consensus 1162 ~~VpQdp~-LF~gTIreNL~~~~~~~s-~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~- 1238 (1350)
++++|+.. .|..++.+|+.++..+.. .+.+.++++..++.+ .++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2451213577442098876410014668999999998659876-----------76768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99888983767788989899999999985-499639998159126640-388999949869780694677411
Q 000689 1239 ------KAEIMLLDEATSALDAESERSVQEALDRA-CSGKTTIVVAHRLSTIRN-AHVIAVIDDGKVAELGSHSHLLKN 1309 (1350)
Q Consensus 1239 ------~~~ILiLDEaTSaLD~~te~~I~~~L~~~-~~~~TvI~IaHRl~ti~~-~DrI~vL~~G~Ive~Gt~~eLl~~ 1309 (1350)
+|+||||||||++||+.+...+.+.++++ ..|+|+|+++|+++.+.. ||||++|++|++++.|+|+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-35 Score=299.01 Aligned_cols=209 Identities=25% Similarity=0.389 Sum_probs=179.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.++++||+++| .|+++||+|++||+++|+||||||||||+++|.|++ |++|+|.++|.++..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 88836787-650128999632999999-989999999943399995099983212008999989679999999998327-
Q 000689 507 GLVSQEPA-LFATTIKENILLGRPDAD-LNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLK- 583 (1350)
Q Consensus 507 ~~v~Q~~~-lf~~ti~eNi~~g~~~~~-~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~- 583 (1350)
+|++|+.. .|..++.+++.++..... .+.+.+.++.. +++..++.+..+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 245121357744209887641001466899999999865-----------987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------998768726677879899999999999860-89769998159135530-398999849879885395789832
Q 000689 584 ------NPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRK-ADVVAVLQQGSVSEIGTHDELIAK 654 (1350)
Q Consensus 584 ------~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~vl~~G~i~~~g~~~~l~~~ 654 (1350)
+|+++||||||++||+.+...+.+.++++. .|+|+|+++|+++.+.. ||+|++|++|++++.|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.3e-34 Score=290.09 Aligned_cols=191 Identities=20% Similarity=0.407 Sum_probs=158.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 28999789988999998832110289848989999959999788999999513789953799999517899978762111
Q 000689 1082 EVELKHVDFSYPSRPDIPIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1082 ~I~f~nVsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
.|+++|++++|+ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 887367766754-588886139----999999999999998251899960998754311499998993699999999982
Q 000689 1162 AIVPQEPCLFAS-TIYENIAYG----HESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAF 1236 (1350)
Q Consensus 1162 ~~VpQdp~LF~g-TIreNL~~~----~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAl 1236 (1350)
+|+||++.++.. |+.+|+.+. ....+++++.++++..++.+ ++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 1499888983767788989899999999985499639998159126640388999949
Q 000689 1237 VRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDD 1294 (1350)
Q Consensus 1237 L~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~ 1294 (1350)
+.+|+++||||||++||+++...+++.|.+..+++++++|+|+.. +..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH-HHHCCHHHHEEE
T ss_conf 649989998686201699999999999999986799999999162-544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.7e-32 Score=272.62 Aligned_cols=189 Identities=21% Similarity=0.391 Sum_probs=151.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 09999788988999997541102799728989999869999389999999628779974899999607888888874347
Q 000689 427 LIELKHVDFSYPSRPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQI 506 (1350)
Q Consensus 427 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i 506 (1350)
.|+++|++|+|+ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888367876501-289996329----999999899999999433999950999832120089999896799999999983
Q 000689 507 GLVSQEPALFAT-TIKENILLG----RPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAM 581 (1350)
Q Consensus 507 ~~v~Q~~~lf~~-ti~eNi~~g----~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal 581 (1350)
+|+||++.++.. |+.+|+.+. ....+.+++.++.+.... + +++ ++..+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~----~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLK----KKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTT----SBGGGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCC----CCCCCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488------5--630----12686897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 2799876872667787989999999999986089--769998159135530398999849
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMIG--RTTLVIAHRLSTIRKADVVAVLQQ 639 (1350)
Q Consensus 582 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~--~tvi~itH~~~~~~~~d~i~vl~~ 639 (1350)
+.+|+++||||||++||+++++.+.+.+.++.++ .++|..+|++ ..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHHEEE
T ss_conf 6499899986862016999999999999999867999999991625---44161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=3e-25 Score=219.19 Aligned_cols=316 Identities=14% Similarity=0.216 Sum_probs=276.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 18999894262458999999999999797889999999999985247988614879999999999999999999999999
Q 000689 88 GLGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNNMDKMMQEVLKYAFYFLVVGAAIWASSWAE 167 (1350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1350)
.++++++|.++. +..++++.++..+.+...+..+.+++.++|..... .+. ..+...++.++++.++..++.+++
T Consensus 3 ~~krl~~~~~~~-k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~-~~~----~~l~~~~~~~~~~~~~~~i~~~~~ 76 (319)
T d3b60a2 3 TFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-TDR----SVLLWMPLVVIGLMILRGITSYIS 76 (319)
T ss_dssp HHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TTH----HHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999-99999999999999999999999999999987446-877----899999999999999764533546
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999809924471368822799999987999999999999999989999999999999996
Q 000689 168 ISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSAV 247 (1350)
Q Consensus 168 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~fd~~~~~G~i~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1350)
.++....+.++..++|.+++++++++|.++|+++ ++|++++++++|++.+.+.+...+...+..+..+++.+++++..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (319)
T d3b60a2 77 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 155 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6544343100011000477776501011110233-322111112121210000111112001123344566888887652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999999999999999999999999999999998029999986538999999999999999999999
Q 000689 248 WQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYKS 327 (1350)
Q Consensus 248 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~~i~tIk~f~~e~~~~~~~~~~~~~~~~~~~~~ 327 (1350)
|.+++++++.+|+..+......++..+..++.++..++..+...|.++|+++||+|++|+.+.+++.+..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 00210256689999998876666877878988764456778877762487235311101024566666531356778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99988889999999999999999999999981056877999999999999999999999999999999999999998824
Q 000689 328 GFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIIDH 407 (1350)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 407 (1350)
....+.......++.....++++++|++++.+|.++.|.+++++.+......|+.++...+..+.++..+.+|+++++|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 236 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87777406401000000237999999999980997899999999999999999999999999999999999999999669
Q ss_pred CCC
Q ss_conf 999
Q 000689 408 KPS 410 (1350)
Q Consensus 408 ~~~ 410 (1350)
+||
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=2.3e-25 Score=220.25 Aligned_cols=320 Identities=14% Similarity=0.138 Sum_probs=269.3
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998942624589999999999997978899999999999852479886-14-87999999999999999999999999
Q 000689 89 LGELFRFADSLDYVLMAIGSLGAFVHGCSFPIFLRFFADLVNSFGSNVNN-MD-KMMQEVLKYAFYFLVVGAAIWASSWA 166 (1350)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1350)
++++++|.++.++ .+++.+++.++.+......+++++.++|........ .. .....+...+..++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999-999999999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999980992447136882279999998799999999999999998999999999999999
Q 000689 167 EISCWMWTGERQSIKMRIKYLEAALNQDVQYFDTEVRTSDVVYAINTDAVIVQDAISEKLGNFIHYLATFVTGFAVGFSA 246 (1350)
Q Consensus 167 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~fd~~~~~G~i~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1350)
+.++..+.+.++..++|.++++|++++|++|||++ ++|++++++++|++.+++.+...+...+..+..+++.+++++..
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012-22110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69899999999999999999999999999999999999999999999802999998653899999999999999999999
Q 000689 247 VWQLALVTLAVVPLIAVIGAIHATSLAKLAGKSQEALSQAGNIVEQTVVQIRVVFAFVGESKALQAYSSALKVAQRLGYK 326 (1350)
Q Consensus 247 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~~i~tIk~f~~e~~~~~~~~~~~~~~~~~~~~ 326 (1350)
+|.++++.++..|+..+....+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998888999999999999999999999998105687799999999999999999999999999999999999999882
Q 000689 327 SGFAKGMGLGATYFVVFCSYALLLWYGGYLVRHHFTNGGLAIATMFAVMIGGLALAQAAPSISAFAKAKVAAAKIFRIID 406 (1350)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 406 (1350)
..............+..+..++++++|++++.+|.++.|.+++++.+......|+..+...+..+.++..+.+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 4999
Q 000689 407 HKPS 410 (1350)
Q Consensus 407 ~~~~ 410 (1350)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1.8e-22 Score=196.40 Aligned_cols=317 Identities=15% Similarity=0.222 Sum_probs=281.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999987403359999999999999999899999999999999829963677999999999999999999999999999
Q 000689 743 SSFWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIREIAKYCYLLIGLSSAELLFNTLQHS 822 (1350)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 822 (1350)
..+++++++.+++++.++++.++.++.++...+.++++..+++....... ......+...++++.++..++.+++.+
T Consensus 2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~ 78 (319)
T d3b60a2 2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY 78 (319)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999999999999999999999998744687---789999999999999976453354665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999981895432335679679999999549999999988799999999999999999998989
Q 000689 823 FWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVLQW 902 (1350)
Q Consensus 823 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~i~~rl~~D~~~i~~~~~~~l~~~i~~~~~~~~~l~~~~~~~~ 902 (1350)
+..+.+.+...++|+++++++++.|+.||++ +++|++.+|+++|++.+...+...+...+...+.+++.++.++..+|
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4434310001100047777650101111023--33221111121212100001111120011233445668888876520
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999854769999999999999999872299999951289999999999978999999999
Q 000689 903 RLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFWKG 982 (1350)
Q Consensus 903 ~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (1350)
.+++++++.+|+.........+..++..++..+...+..+...|.+.|++++|+++.|+.+.+++.+..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02102566899999988766668778789887644567788777624872353111010245666665313567788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99965589999999999999999999998707787899999999999999999999988999999999999999984354
Q 000689 983 QIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRK 1062 (1350)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~ 1062 (1350)
...........+...+..++++++|.+++.+|.++.|.+++++.+......++..+......++++..+.+|+.+++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77774064010000002379999999999809978999999999999999999999999999999999999999996699
Q ss_pred CC
Q ss_conf 56
Q 000689 1063 TE 1064 (1350)
Q Consensus 1063 ~~ 1064 (1350)
+|
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
T ss_conf 89
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=4.5e-22 Score=193.13 Aligned_cols=318 Identities=11% Similarity=0.109 Sum_probs=273.6
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999987403359999999999999999899999999999999829963677999----9999999999999999999999
Q 000689 745 FWRLAKMNSPEWVYALVGSVGSVICGSLNAFFAYVLSAIMSVYYNPDHAYMIRE----IAKYCYLLIGLSSAELLFNTLQ 820 (1350)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 820 (1350)
+++++++.+++++.++...++.++.+.+..+.+++.+.+++............. .......++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999818954323356796799999995499999999887999999999999999999989
Q 000689 821 HSFWDIVGENLTKRVREKMLAAVLKNEIAWFDQEENESARIAARLALDANNVRSAIGDRIQVIVQNTALMLVACTAGFVL 900 (1350)
Q Consensus 821 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~i~~rl~~D~~~i~~~~~~~l~~~i~~~~~~~~~l~~~~~~ 900 (1350)
.++..+.+.+...++|.++++++++.|+.||++ +++|++++|+++|++.+++.+...+...+...+.+++.++.++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998556778888766540233210001--222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999998547699999999999999998722999999512899999999999789999999
Q 000689 901 QWRLALVLIAVFPVVVAATVLQKMFMKGFSGDMEAAHSKATQLAGEAIGNVRTVAAFNSELMIVGLFSSNLQTPLRRCFW 980 (1350)
Q Consensus 901 ~~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1350)
+|.++++.++..|+..+......+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+..+...+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999655899999999999999999999987077878999999999999999999999889999999999999999843
Q 000689 981 KGQIAGSGYGVAQFCLYASYALGLWYSSWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLD 1060 (1350)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~ 1060 (1350)
..............+..+..++++++|.+++.+|.+++|.++++..+......++..+......+.++..+++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCCC
Q ss_conf 5456
Q 000689 1061 RKTE 1064 (1350)
Q Consensus 1061 ~~~~ 1064 (1350)
+++|
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
T ss_conf 9998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.47 E-value=2.9e-15 Score=137.09 Aligned_cols=171 Identities=8% Similarity=0.046 Sum_probs=115.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99999599997889999995137899537999995178999787621118873677667545888861399999999999
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEII 1192 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~s~~ei~ 1192 (1350)
+++|+||+|||||||++.+.+++++..|.+.+++.+....+...........++...++..+..++...++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999825189996099875431149999899369999999998214998889837677889898999999999854--99
Q 000689 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERSVQEALDRAC--SG 1270 (1350)
Q Consensus 1193 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~--~~ 1270 (1350)
..+++|++|+.++++++.++|+++++|||+...+. .....+.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf ---------------------------66532013789999997409974230277731004--5799999998750579
Q ss_pred CEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHH
Q ss_conf 63999815912664038899994986978069467741199953599999
Q 000689 1271 KTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 1320 (1350)
Q Consensus 1271 ~TvI~IaHRl~ti~~~DrI~vL~~G~Ive~Gt~~eLl~~~~~g~y~~l~~ 1320 (1350)
+|+|+++|+......||++..+++|++++.+... + +..+.+++.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~n----r--d~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN----R--DVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTT----T--TTHHHHHHH
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECCCC----H--HHHHHHHHH
T ss_conf 7899997447789863659987199999989964----7--889999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=5.7e-14 Score=126.48 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=105.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998699993899999996287799748999996078888888743478883678765012899963299999998999
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLNEIE 537 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~~~ 537 (1350)
+++|+||+|||||||++.++|++++..|.+.+++.+.................+.+.++..+..++...++....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVN----- 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEEC-----
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037-----
Q ss_pred HHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf 9999943399995099983212008999989679999999998327998768726677879899999999999860--89
Q 000689 538 EAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM--IG 615 (1350)
Q Consensus 538 ~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~--~~ 615 (1350)
.. ...+++|+++|.++++++..+|+++++|||....+. . ..+.+.+.+.. .+
T Consensus 77 --------------------~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 77 --------------------VQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------HH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred --------------------CC----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf --------------------62----566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 76999815913553039899984987988539
Q 000689 616 RTTLVIAHRLSTIRKADVVAVLQQGSVSEIGT 647 (1350)
Q Consensus 616 ~tvi~itH~~~~~~~~d~i~vl~~G~i~~~g~ 647 (1350)
.|+|+++|+......+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=4.6e-10 Score=94.35 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 899369999999998----214998889837677889898999999999854-996399981591266403889999
Q 000689 1221 QLSGGQKQRVAIARA----FVRKAEIMLLDEATSALDAESERSVQEALDRAC-SGKTTIVVAHRLSTIRNAHVIAVI 1292 (1350)
Q Consensus 1221 ~LSgGQkQrlaLARA----lL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrI~vL 1292 (1350)
.+|||||.++++|-. .+.++||++||||+++||+.....+.+.|++.. .+.-+|+|||++..+..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.6e-09 Score=89.96 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 9989679999999998----327998768726677879899999999999860-897699981591355303989998
Q 000689 565 VQLSGGQKQRIAIARA----MLKNPAILLLDEATSALDSESEKLVQEALDRFM-IGRTTLVIAHRLSTIRKADVVAVL 637 (1350)
Q Consensus 565 ~~LSgGqkqri~lARa----l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~vl 637 (1350)
..||||||.+++||-. .+.++|+++||||+++||+.....+.+.|.++. .+.-+|+|||+...+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=4.9e-09 Score=85.88 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EEC
Q ss_conf 899369999999998----21499888983767788989899999999985499639998159126640388999--949
Q 000689 1221 QLSGGQKQRVAIARA----FVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAV--IDD 1294 (1350)
Q Consensus 1221 ~LSgGQkQrlaLARA----lL~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~v--L~~ 1294 (1350)
.+|+|||+++.++.. ...+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000689 1295 G 1295 (1350)
Q Consensus 1295 G 1295 (1350)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=2.8e-08 Score=79.69 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EE
Q ss_conf 9989679999999998----32799876872667787989999999999986089769998159135530398999--84
Q 000689 565 VQLSGGQKQRIAIARA----MLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAV--LQ 638 (1350)
Q Consensus 565 ~~LSgGqkqri~lARa----l~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~v--l~ 638 (1350)
..+|+|||+...++.. ...+++++++|||-++|++...+.+.+.+....++.-+|++||+...+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000689 639 QG 640 (1350)
Q Consensus 639 ~G 640 (1350)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.78 E-value=0.0056 Score=36.04 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=25.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4110279972898999986999938999999962
Q 000689 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 445 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
-|+.+.--+.+|+.+.|.|++|+||||++.-+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.024 Score=30.86 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHH
Q ss_conf 54110279972898999986999938999999962877997489999960788888887434788836787650128999
Q 000689 444 RILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKEN 523 (1350)
Q Consensus 444 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 523 (1350)
.++.+ +.+|+.+.|.|++|+|||||+.-++--.. .|.=..+..... ...+-|+.-|.. ...+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf 98689----55895899992899989999999999997--699721112357-------873689851234--9999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----C
Q ss_conf 63299999998999999994339999509998321200899998967999999999832799876872667787-----9
Q 000689 524 ILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSAL-----D 598 (1350)
Q Consensus 524 i~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illLDE~ts~l-----D 598 (1350)
+.--....+.+....... .+ ......+...... -....-.+. ....+++++++|--++.. |
T Consensus 86 l~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 86 LHALGAHLSAEERQAVAD------GL-----LIQPLIGSLPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp HHHHHTTSCHHHHHHHHH------HE-----EECCCTTSCCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTC
T ss_pred HHHHHHCCCHHHHHCCCC------CC-----EECCCCCCCCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCC
T ss_conf 999862368666531233------32-----3214567420357--899999988-752676589628135422665232
Q ss_pred HHHHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 899999999999860--89769998159
Q 000689 599 SESEKLVQEALDRFM--IGRTTLVIAHR 624 (1350)
Q Consensus 599 ~~~~~~i~~~l~~~~--~~~tvi~itH~ 624 (1350)
......+...+..+. .+++++++.|-
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 2568999988777764479754013100
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.15 E-value=0.0037 Score=37.50 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=19.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 489899999599997889999995137899537999
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1144 (1350)
+.|..+.|+|++||||||+++.|+++.++..=-|.|
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 837888999403566257899986530145623311
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.96 E-value=0.037 Score=29.25 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=23.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7289899998699993899999996287
Q 000689 453 VPAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 453 i~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++|+.+.|.|++|+|||+++.-++...
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8698499999189999999999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.95 E-value=0.041 Score=28.95 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-CEEECCCCCCCCCCHH
Q ss_conf 83211028984898999995999978899999951-378995379999951789997876211-1887367766754588
Q 000689 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR-FYEPSSGRVMIDGKDIRKYNLKSLRRH-MAIVPQEPCLFASTIY 1176 (1350)
Q Consensus 1099 ~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~l~~lR~~-i~~VpQdp~LF~gTIr 1176 (1350)
+-|+++..-+.||+.+.|.|++|+||||++.-+.. +..-..-.+.+-.. +.+.+....+ ++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 66888746978980899994799979999999997265533663457640---111135776999986458710101222
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCH
Q ss_conf 88613999999999999999825189996099875431149999899369999999998--2149988898376778898
Q 000689 1177 ENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARA--FVRKAEIMLLDEATSALDA 1254 (1350)
Q Consensus 1177 eNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARA--lL~~~~ILiLDEaTSaLD~ 1254 (1350)
. ...+...+.++...+...-...+.+........+ .+...+. --.+++++++|=.+ .+++
T Consensus 100 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~-~l~~ 161 (277)
T d1cr2a_ 100 R---------------EIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHIS-IVVS 161 (277)
T ss_dssp H---------------HHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEE-C---
T ss_pred C---------------CHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCC-CCCC
T ss_conf 2---------------2145677888988740352146621433106899--99986543213676259970542-1203
Q ss_pred --------HHHHHHHHHHHHHC--CCCEEEEEECCCH----------------H------HH-HCCEEEEEECC
Q ss_conf --------98999999999854--9963999815912----------------6------64-03889999498
Q 000689 1255 --------ESERSVQEALDRAC--SGKTTIVVAHRLS----------------T------IR-NAHVIAVIDDG 1295 (1350)
Q Consensus 1255 --------~te~~I~~~L~~~~--~~~TvI~IaHRl~----------------t------i~-~~DrI~vL~~G 1295 (1350)
+....+.+.|+.+. .++++++++|=-. . +. .||.++.+..-
T Consensus 162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 46544306778999999999765016552031035632244455433332112123430015038699999846
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.79 E-value=0.046 Score=28.47 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=71.4
Q ss_pred EEEEEEEEECCCC--CCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEECCCC
Q ss_conf 9999788988999--9975411027997289899998699993899999996--------28779974899999607888
Q 000689 428 IELKHVDFSYPSR--PEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE--------RFYDPTSGQVLLDGHDIKSL 497 (1350)
Q Consensus 428 i~~~~v~f~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~--------~~~~~~~G~i~i~g~~i~~~ 497 (1350)
+++++. +.|-- +...|=+|+. +. ++.+.|.|||.+||||+++.+. |.+-|.+.
T Consensus 10 ~~i~~~--rHPlle~~~~~VpNdi~--~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~------------ 72 (224)
T d1ewqa2 10 LQIRAG--RHPVVERRTEFVPNDLE--MA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEE------------ 72 (224)
T ss_dssp EEEEEE--CCTTGGGTSCCCCEEEE--ES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSE------------
T ss_pred EEEEEC--CCCEECCCCCEECCEEE--EC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCC------------
T ss_conf 789857--18879489975455588--47-86799978873453234556589999985250461375------------
Q ss_pred CHHHHHCCEEEECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 88887434788836787650-12899963299999998999999994339999509998321200899998967999999
Q 000689 498 KLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIA 576 (1350)
Q Consensus 498 ~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~ 576 (1350)
+-++.-..+|. -...|++.-|.... ..|+.+. ...+.
T Consensus 73 ---------~~i~~~d~I~~~~~~~d~~~~~~StF-~~el~~~------~~il~-------------------------- 110 (224)
T d1ewqa2 73 ---------AHLPLFDGIYTRIGASDDLAGGKSTF-MVEMEEV------ALILK-------------------------- 110 (224)
T ss_dssp ---------EEECCCSEEEEECCC------CCSHH-HHHHHHH------HHHHH--------------------------
T ss_pred ---------EEEEECCEEEEEECCCCCCCCCCCHH-HHHHHHH------HHHHC--------------------------
T ss_conf ---------19940116999987776023783078-9867889------87750--------------------------
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHC-CCCEEEEECCCCHHHH
Q ss_conf 9998327998768726677879899999-999999860-8976999815913553
Q 000689 577 IARAMLKNPAILLLDEATSALDSESEKL-VQEALDRFM-IGRTTLVIAHRLSTIR 629 (1350)
Q Consensus 577 lARal~~~~~illLDE~ts~lD~~~~~~-i~~~l~~~~-~~~tvi~itH~~~~~~ 629 (1350)
-..+..++|+||...+=+++.... ....+..+. .+.+++++||..+...
T Consensus 111 ----~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 ----EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp ----HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred ----CCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf ----289772785545456862332002588888888623761378652023332
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.73 E-value=0.0027 Score=38.63 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999938999999962877
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
|+++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.00013 Score=49.53 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 99995999978899999951378995379999951
Q 000689 1114 LALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1148 (1350)
|.|+|+.|+|||||++.+.+.+...++.+.+.+.+
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99988999719999999999999779979999845
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.62 E-value=0.029 Score=30.19 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699993899999996
Q 000689 458 TIALVGSSGSGKSTVVSLIE 477 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~ 477 (1350)
.+.++|++||||||+++.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.54 E-value=0.01 Score=33.79 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=31.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 99998699993899999996287--7997489999960788888887434788
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY--DPTSGQVLLDGHDIKSLKLRWLRQQIGL 508 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~--~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 508 (1350)
.++|+|+.|+|||||+..|+..- ....|++. +|..+.+....+..+++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEE
T ss_conf 999994889809999999999709755306622-2211356269888738768
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.0066 Score=35.47 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8989999869999389999999628779974899
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~ 488 (1350)
+|++++++|+||.|||||++.|.+......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.0083 Score=34.63 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8989999959999788999999513789953799
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVM 1143 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1143 (1350)
+|++.+++|+||.|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.14 E-value=0.022 Score=31.15 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=30.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 997289899998699993899999996287799748999
Q 000689 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLL 489 (1350)
Q Consensus 451 l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i 489 (1350)
..+..+..+.|+|++||||||+++.|.++.++..--|++
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 999837888999403566257899986530145623311
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.012 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999938999999962877
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.|.++.|+||||+||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.91 E-value=0.0067 Score=35.41 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869999389999999628779974899999
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG 491 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g 491 (1350)
.|+.+.|.|++||||||+.+.|...+.. --+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.063 Score=27.37 Aligned_cols=45 Identities=13% Similarity=0.375 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 7998768726677879899999999999860897699981591355
Q 000689 583 KNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI 628 (1350)
Q Consensus 583 ~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 628 (1350)
.+.+++++||+-. +.......+.+.+........+|+++++.+-+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.82 E-value=0.0096 Score=34.09 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE----------EECCCCCCCCCHHHHHC
Q ss_conf 98999995999978899999951378995379----------99995178999787621
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRV----------MIDGKDIRKYNLKSLRR 1159 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I----------~idG~di~~~~l~~lR~ 1159 (1350)
|..+.|+||||||||||++.|..-++.....+ ..||+|-.-++.+...+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~ 60 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ 60 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHH
T ss_conf 74999989999999999999984589971798860467774446885133012202455
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.099 Score=25.78 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=74.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHH
Q ss_conf 32110289848989999959999788999999513789953799999517899978762111887367766754588886
Q 000689 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENI 1179 (1350)
Q Consensus 1100 vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL 1179 (1350)
++.+ +.||+.+.|+|++|+||||++.-|.--. ..|.=..++.... ...+-|+.-|. ....+.+.+
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~Rl 86 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHRL 86 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHHH
T ss_conf 8689----5589589999289998999999999999--7699721112357-------87368985123--499999999
Q ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CH
Q ss_conf 1399999999999999982518999609987543114999989936999999999821499888983767788-----98
Q 000689 1180 AYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEATSAL-----DA 1254 (1350)
Q Consensus 1180 ~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiLDEaTSaL-----D~ 1254 (1350)
.--..+.+.++.......... .... +.....-....+.-.+....+++++++|--+... |.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~ 152 (274)
T d1nlfa_ 87 HALGAHLSAEERQAVADGLLI-----------QPLI---GSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENAS 152 (274)
T ss_dssp HHHHTTSCHHHHHHHHHHEEE-----------CCCT---TSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred HHHHHCCCHHHHHCCCCCCEE-----------CCCC---CCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCH
T ss_conf 998623686665312333232-----------1456---74203578999999887526765896281354226652322
Q ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HHH-HCCEEEEEEC
Q ss_conf 98999999999854--9963999815912------------------664-0388999949
Q 000689 1255 ESERSVQEALDRAC--SGKTTIVVAHRLS------------------TIR-NAHVIAVIDD 1294 (1350)
Q Consensus 1255 ~te~~I~~~L~~~~--~~~TvI~IaHRl~------------------ti~-~~DrI~vL~~ 1294 (1350)
.....+...|+.+. .++|+++|.|--. .+. .+|.++.|..
T Consensus 153 ~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 153 GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 5689999887777644797540131005554446886653356427778742558999983
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.099 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9728989999869999389999999628779
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
.+++...+.+.||+|||||++++.+...+..
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~ 71 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 9998886786689988822899999998299
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.58 E-value=0.02 Score=31.57 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++++|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.0074 Score=35.03 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999389999999628779
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
.++|+|++|||||||++-|.+.+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.1 Score=25.58 Aligned_cols=141 Identities=19% Similarity=0.262 Sum_probs=72.0
Q ss_pred EEEEEEEEEECCC----CCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCEEEECCEEC
Q ss_conf 0999978898899----99975411027997289899998699993899999996--------28779974899999607
Q 000689 427 LIELKHVDFSYPS----RPEVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIE--------RFYDPTSGQVLLDGHDI 494 (1350)
Q Consensus 427 ~i~~~~v~f~y~~----~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~--------~~~~~~~G~i~i~g~~i 494 (1350)
.+++++.. .|- .++..|=+++++. +.+....|.|||.+||||+++.+. |.+-|.+- -
T Consensus 11 ~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~-a------- 79 (234)
T d1wb9a2 11 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK-V------- 79 (234)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSE-E-------
T ss_pred CEEEEEEE--CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCC-E-------
T ss_conf 68999737--87797446998264057988-9953999954673136899998799999987297674176-6-------
Q ss_pred CCCCHHHHHCCEEEECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 88888887434788836787650-12899963299999998999999994339999509998321200899998967999
Q 000689 495 KSLKLRWLRQQIGLVSQEPALFA-TTIKENILLGRPDADLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQ 573 (1350)
Q Consensus 495 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkq 573 (1350)
-++--..+|. -...|++.-|.... ..|+.+..+. +
T Consensus 80 -------------~~~~~d~I~~~~~~~d~~~~~~S~F-~~E~~~~~~i------l------------------------ 115 (234)
T d1wb9a2 80 -------------EIGPIDRIFTRVGAADDLASGRSTF-MVEMTETANI------L------------------------ 115 (234)
T ss_dssp -------------EECCCCEEEEEEC-----------C-HHHHHHHHHH------H------------------------
T ss_pred -------------ECCCCHHHEEEECCCCCCCCCHHHH-HHHHHHHHHH------H------------------------
T ss_conf -------------6134420234874675343653189-9999999999------9------------------------
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-C-CCEEEEECCCCHHH
Q ss_conf 99999983279987687266778798999999-99999860-8-97699981591355
Q 000689 574 RIAIARAMLKNPAILLLDEATSALDSESEKLV-QEALDRFM-I-GRTTLVIAHRLSTI 628 (1350)
Q Consensus 574 ri~lARal~~~~~illLDE~ts~lD~~~~~~i-~~~l~~~~-~-~~tvi~itH~~~~~ 628 (1350)
+ -..+..++|+||...+=++.....+ ...+..+. + +..+++.||.....
T Consensus 116 -----~-~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 116 -----H-NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp -----H-HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred -----H-HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf -----7-454660885322235877456667898764543204544289852468776
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.46 E-value=0.1 Score=25.56 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=19.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2898999986999938999999962
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+.-+.+.++|++||||||+.+-+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.36 E-value=0.013 Score=32.98 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699993899999996287
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++|-++.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.34 E-value=0.11 Score=25.36 Aligned_cols=156 Identities=10% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 83211028-9848989999959999788999999513-789953799999517899978762111887367766754588
Q 000689 1099 PIFRDLSL-RARAGKTLALVGPSGCGKSSVIALVQRF-YEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIY 1176 (1350)
Q Consensus 1099 ~vL~~vsl-~I~~Ge~vaIVG~SGSGKSTL~~lL~rl-~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIr 1176 (1350)
+-|+.+-- -+++|+.+-|.|++|+|||+++.-+..- .....-.+++.- +.+...++++.
T Consensus 13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~~--------------- 73 (242)
T d1tf7a2 13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRNA--------------- 73 (242)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHHH---------------
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHHHH---------------
T ss_conf 77988456898698499999189999999999999999872324411212----67999999999---------------
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHH
Q ss_conf 8861399999999999999982518999609987543114999989936999999999821-499888983767788989
Q 000689 1177 ENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFV-RKAEIMLLDEATSALDAE 1255 (1350)
Q Consensus 1177 eNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL-~~~~ILiLDEaTSaLD~~ 1255 (1350)
-.++ ...++.. .. +....+........ .+...-.+.+++- .+++++++|-.++.....
T Consensus 74 --~~~~---~~~~~~~------------~~---~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~ 132 (242)
T d1tf7a2 74 --YSWG---MDFEEME------------RQ---NLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGV 132 (242)
T ss_dssp --HTTS---CCHHHHH------------HT---TSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS
T ss_pred --HHCC---CCHHHHH------------HC---CCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCC
T ss_conf --9829---9869985------------45---86179973000101-79999999999984088533220431430489
Q ss_pred HHHHHHHHHH---HH--CCCCEEEEEECCCH----------HHH-HCCEEEEEEC
Q ss_conf 8999999999---85--49963999815912----------664-0388999949
Q 000689 1256 SERSVQEALD---RA--CSGKTTIVVAHRLS----------TIR-NAHVIAVIDD 1294 (1350)
Q Consensus 1256 te~~I~~~L~---~~--~~~~TvI~IaHRl~----------ti~-~~DrI~vL~~ 1294 (1350)
+...+.+.+. .. ..++|++++.|... .+. .+|.|+.|+.
T Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 133 SNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9999999999999999986983999985675125544577640464216999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.11 Score=25.25 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=61.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 97289899998699993899999996287799748999996078888888743478883678765012899963299999
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDA 531 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~ 531 (1350)
.+++...+.+.||+|+|||++++.+++..... +-++.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~----------------------~~~~~--------------------- 73 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----------------------FISIK--------------------- 73 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE----------------------EEEEC---------------------
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC----------------------EEEEE---------------------
T ss_conf 99988757887899876304778878771894----------------------79988---------------------
Q ss_pred CHHHHHHHHHHHCHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH----------H
Q ss_conf 998999999994339999509998321200899998967999999999832799876872667787989----------9
Q 000689 532 DLNEIEEAARVANAYSFIIKLPDGFDTQVRERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSE----------S 601 (1350)
Q Consensus 532 ~~~~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGqkqri~lARal~~~~~illLDE~ts~lD~~----------~ 601 (1350)
..++... ..| ...++-|-.+.+|-...|-|+++||.-+-.... .
T Consensus 74 -------------~~~l~~~-------~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~ 127 (265)
T d1r7ra3 74 -------------GPELLTM-------WFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAA 127 (265)
T ss_dssp -------------HHHHHTS-------CTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHH
T ss_pred -------------HHHHHHC-------CCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHH
T ss_conf -------------7995253-------165------15899999999998639843568754632455787678873799
Q ss_pred HHHHHHHHHHH---C--CCCEEEEECCCCHHHH
Q ss_conf 99999999986---0--8976999815913553
Q 000689 602 EKLVQEALDRF---M--IGRTTLVIAHRLSTIR 629 (1350)
Q Consensus 602 ~~~i~~~l~~~---~--~~~tvi~itH~~~~~~ 629 (1350)
++.+...+..+ . .+.-+|..|++.+.+.
T Consensus 128 ~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 128 DRVINQILTEMDGMSTKKNVFIIGATNRPDIID 160 (265)
T ss_dssp HHHHHHHHHTCC------CCEEEECCBSCTTTS
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCC
T ss_conf 999999999962867779989999179922279
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.11 Score=25.25 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 984898999995999978899999951378
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.+++..-+-+.||+|+|||++++.+.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.00027 Score=46.90 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 899998699993899999996287799748999996
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH 492 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~ 492 (1350)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~ 37 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT 37 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 699998899971999999999999977997999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.14 E-value=0.022 Score=31.09 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 89899999599997889999995137899537999995
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1147 (1350)
.|+.+.|+|++||||||+++.|.+-+... -+.+|+-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~d 38 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHSD 38 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECHH
T ss_conf 98599998899998899999999995999--7990689
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.019 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999389999999628779
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
+++|.|++|||||||.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.72 E-value=0.028 Score=30.30 Aligned_cols=28 Identities=32% Similarity=0.668 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2898999986999938999999962877
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
|+|-.+.|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.70 E-value=0.0077 Score=34.89 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8989999869999389999999628779974899
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVL 488 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~ 488 (1350)
+|+++.++|+||.|||||++.|.+......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.13 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=19.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7289899998699993899999996287
Q 000689 453 VPAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 453 i~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
-.+...+++|||+|+||||-+--|...+
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999899998999998899999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.62 E-value=0.019 Score=31.59 Aligned_cols=25 Identities=24% Similarity=0.155 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999389999999628779
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
.++|+|.+|||||||+.-|.+.+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.62 E-value=0.0085 Score=34.52 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89899999599997889999995137899537999
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMI 1144 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~i 1144 (1350)
+|++..++|+||.|||||++.|.+-..-..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.024 Score=30.79 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.60 E-value=0.032 Score=29.81 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999938999999962877
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.015 Score=32.47 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999599997889999995137899
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPS 1138 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~ 1138 (1350)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.028 Score=30.25 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCCCCCCCCHHHHHCCC
Q ss_conf 89899999599997889999995137899537--9----------9999517899978762111
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGR--V----------MIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~--I----------~idG~di~~~~l~~lR~~i 1161 (1350)
.|..+.|+||||+||+||.+.|..-++...-. | ..||+|..-++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.43 E-value=0.025 Score=30.71 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.42 E-value=0.16 Score=24.11 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 899999599997889999995137899537999995
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGK 1147 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~ 1147 (1350)
+.+.|+|++||||||+++.|.+-. .|...++.-
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHH
T ss_conf 799998999999999999999957---997996039
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.29 E-value=0.023 Score=31.04 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.++|.|++|+|||||++.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.28 E-value=0.029 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4898999995999978899999951378
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++|-.|.|+|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.042 Score=28.85 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999869999389999999628779974
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~~~G 485 (1350)
.++|+|++|+|||||++.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.023 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=32.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHH
Q ss_conf 9999869999389999999628779974899999607888888874347888367876501289
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIK 521 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 521 (1350)
+++|.|++||||||+.+.|.....-..+. .++..+++|.+..+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHH
T ss_conf 99996899998768999999997304689-----------------965999521568984588
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.17 Score=23.83 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=27.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 848989999959999788999999513789953799999517
Q 000689 1108 ARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1108 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1149 (1350)
+++...+-+.||+|+|||++++.+.+.+... -+.++..++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 9988867866899888228999999982998--799886994
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.039 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.358 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHH
Q ss_conf 99999599997889999995137899537999995178999787621118873677667545888
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYE 1177 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIre 1177 (1350)
.|||.|++||||||+.+.|..+..-..+ ..++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.14 E-value=0.12 Score=25.04 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=54.9
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHH
Q ss_conf 99998699993899999996---287799748999996078888888743478883678765012899963299999998
Q 000689 458 TIALVGSSGSGKSTVVSLIE---RFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADLN 534 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~---~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~ 534 (1350)
.++|+|..|||||||+..|+ |..+. .|++. +|..+.+..+.+..+.+++-..-.. | ...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~-~-------------~~~-- 69 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITITAAVTT-C-------------FWK-- 69 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCCCCSEEE-E-------------EET--
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCC-CCCEE-CCCEEEECCHHHHHCCCCCCCCEEE-E-------------CCC--
T ss_conf 9999958989989999999996485340-23365-1846985658887518860011234-3-------------159--
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9999999943399995099983212008999-98967999999999832799876872667787989999999999
Q 000689 535 EIEEAARVANAYSFIIKLPDGFDTQVRERGV-QLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL 609 (1350)
Q Consensus 535 ~~~~~~~~~~~~~~i~~lp~g~~t~~~~~g~-~LSgGqkqri~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l 609 (1350)
+.--+.++..|. ++++--..=+. ..+.-|++.| +..++.+.|++....+-
T Consensus 70 -------------------~~~~n~iDtPG~~dF~~e~~~~l~-----~~D~avlVvd-a~~Gv~~~T~~~w~~a~ 120 (276)
T d2bv3a2 70 -------------------DHRINIIDAPGHVDFTIEVERSMR-----VLDGAIVVFD-SSQGVEPQSETVWRQAE 120 (276)
T ss_dssp -------------------TEEEEEECCCSSSSCSTTHHHHHH-----HCCEEEEEEE-TTTSSCHHHHHHHHHHH
T ss_pred -------------------CEEEEEECCCCHHHHHHHHHHHHH-----HHHHEEEECC-CCCCCCHHHHHHHHHHH
T ss_conf -------------------838999527860226999999999-----6300577322-56774466999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.00 E-value=0.035 Score=29.51 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.++|+|++|+||||+++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.034 Score=29.57 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699993899999996287
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.026 Score=30.49 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993899999996287
Q 000689 459 IALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 459 ~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.|+|||||||+||.+.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.047 Score=28.41 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999389999999628
Q 000689 457 KTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+.+.|+||||+||+||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.75 E-value=0.039 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999959999788999999513789
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEP 1137 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p 1137 (1350)
.|||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.72 E-value=0.042 Score=28.83 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4898999995999978899999951378
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++|-.+.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.69 E-value=0.037 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 98999986999938999999962877997
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~~~~ 484 (1350)
.++++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.64 E-value=0.092 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 989999959999788999999513
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+=+|||+|++|+|||||++.|++-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=92.55 E-value=0.048 Score=28.36 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999995999978899999951378
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.+.|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.02 Score=31.41 Aligned_cols=27 Identities=41% Similarity=0.571 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999938999999962877
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+|-++.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.041 Score=28.89 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489899999599997889999995137
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
+.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.43 E-value=0.049 Score=28.26 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 89999869999389999999628779974899999
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG 491 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g 491 (1350)
..+.|+|++||||||+.+.|.+.+. +...+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.23 E-value=0.029 Score=30.17 Aligned_cols=44 Identities=39% Similarity=0.385 Sum_probs=30.3
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 99728989999869999389999999628779--974899999607
Q 000689 451 LTVPAGKTIALVGSSGSGKSTVVSLIERFYDP--TSGQVLLDGHDI 494 (1350)
Q Consensus 451 l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~--~~G~i~i~g~~i 494 (1350)
+.-++|.++.+.|.+||||||+.+.|...+.. ..-.+.+||.++
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 8589986999989999998999999998877742750899753678
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.14 E-value=0.046 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999995999978899999951378
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.23 Score=22.74 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4898999995999978899999951
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
++-+.+-++|..||||||+++-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.02 E-value=0.039 Score=29.10 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCC
Q ss_conf 899999599997889999995137899---537999995
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPS---SGRVMIDGK 1147 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~ 1147 (1350)
..++|+|.+|||||||+.-|.+.+... -|.|.-|+-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.00 E-value=0.051 Score=28.14 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.99 E-value=0.046 Score=28.49 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.94 E-value=0.062 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++++|.+|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.061 Score=27.49 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=29.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCC
Q ss_conf 99999599997889999995137899537999995178999787621118873677667
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLF 1171 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF 1171 (1350)
.|||.|++||||||+.+.|...+.-.. .+ .-...+.++++|.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~-------~~-------~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE-------VD-------YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG-------SC-------GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC-------CC-------CCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101-------34-------5788439993465322
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.90 E-value=0.046 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9899999599997889999995137899537
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1141 (1350)
...|+|.|+.||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.90 E-value=0.065 Score=27.28 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.89 E-value=0.075 Score=26.75 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699993899999996287
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
|+|-.+.|+||.||||||+.+.|+..|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.067 Score=27.18 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=31.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC-C----------CEEEECCCCCCCCCHHHHHCCC
Q ss_conf 899999599997889999995137899-5----------3799999517899978762111
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPS-S----------GRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~-~----------G~I~idG~di~~~~l~~lR~~i 1161 (1350)
..+.|+||||+||+||++.|.+-++-. . -.-..||+|..=++.+...+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~ 64 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDI 64 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHE
T ss_conf 7199999899999999999997097676523001668999864557654053146545510
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.60 E-value=0.053 Score=28.02 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=26.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf 8999995999978899999951378995379999951
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKD 1148 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1148 (1350)
..+.|+|++||||||+++.|.+-+. +...++|-+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~ 36 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDI 36 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHHH
T ss_conf 0899989999998999999999809---988983078
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.55 E-value=0.089 Score=26.16 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.++++|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.48 E-value=0.054 Score=27.96 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993899999996287
Q 000689 459 IALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 459 ~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.|+|||||||+||.+.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.061 Score=27.51 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.+.++|++||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.42 E-value=0.09 Score=26.09 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489899999599997889999995137
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
|+|=++.|+|+.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.075 Score=26.75 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+|+++|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.069 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++.|.|
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999989999989999999968
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.33 E-value=0.044 Score=28.63 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
-|||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.00 E-value=0.08 Score=26.51 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699993899999996287
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
..++.|+||.||||||+.+.|...|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.04 Score=29.01 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999995999978899999951378
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
+|-.|-|+|++||||||+++.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.98 E-value=0.067 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++.|+|++||||||+++.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=90.98 E-value=0.073 Score=26.85 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.97 E-value=0.079 Score=26.58 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
++||.|++||||||+.+.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.96 E-value=0.082 Score=26.43 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999995999978899999951378
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
..+.|+|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.085 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.88 E-value=0.05 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999389999999628
Q 000689 459 IALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 459 ~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.78 E-value=0.092 Score=26.03 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999938999999962877
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
..+.++|.+||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.69 E-value=0.087 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 98999995999978899999951378995379999
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1145 (1350)
...|.|+|+.||||||+++.|..-| |-+.++
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.68 E-value=0.31 Score=21.73 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999938999999962877
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
....+++|||+|+||||.+-=|...+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.22 Score=22.93 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.076 Score=26.70 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 999959999788999999513789-------------953799999517899978762111
Q 000689 1114 LALVGPSGCGKSSVIALVQRFYEP-------------SSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl~~p-------------~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
|.|+|||||||+||++.|..-++- ..|+ .+|+|..-++.+.....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~ 62 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHHHH
T ss_conf 99989999998999999997488662477764268999997--578432432488999987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.15 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97289899998699993899999996287
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
-+++|+.+.|.|++|+|||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.41 E-value=0.11 Score=25.30 Aligned_cols=112 Identities=18% Similarity=0.294 Sum_probs=65.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2898999986999938999999962877997489-999960788888887434788836787650128999632999999
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQV-LLDGHDIKSLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDAD 532 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~ 532 (1350)
.++-.+.+.||+||||||.+..+....+.....| ++. +|.=+ -.+...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPiE~----------~~~~~~ 204 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPIEF----------DIDGIG 204 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSCCS----------CCSSSE
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---------------------CCCCC----------CCCCCC
T ss_conf 41054898767877744779998666257874699962---------------------67434----------567887
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCHHC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 98999999994339999509998321200-89999896799999999983279987687266778798999999999998
Q 000689 533 LNEIEEAARVANAYSFIIKLPDGFDTQVR-ERGVQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDR 611 (1350)
Q Consensus 533 ~~~~~~~~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGqkqri~lARal~~~~~illLDE~ts~lD~~~~~~i~~~l~~ 611 (1350)
...+. +.+.+ ---++..+|=++|++++..|.. |.++.....++
T Consensus 205 ------------------------q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a--- 248 (401)
T d1p9ra_ 205 ------------------------QTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA--- 248 (401)
T ss_dssp ------------------------EEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---
T ss_pred ------------------------EEEECCCCCCC------HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH---
T ss_conf ------------------------02655876779------9999999984138889845768---75999999999---
Q ss_pred HCCCCEEEEECCCCHHHHHCC
Q ss_conf 608976999815913553039
Q 000689 612 FMIGRTTLVIAHRLSTIRKAD 632 (1350)
Q Consensus 612 ~~~~~tvi~itH~~~~~~~~d 632 (1350)
...|+.|+..-|--+.....+
T Consensus 249 a~tGhlV~tTlHa~~a~~~~~ 269 (401)
T d1p9ra_ 249 SLTGHLVMSTLHTNTAVGAVT 269 (401)
T ss_dssp HHTTCEEEEEECCSSSHHHHH
T ss_pred HHCCCEEEEEECCCCHHHHHH
T ss_conf 724985899833676676654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.34 E-value=0.12 Score=25.17 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.++|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=90.33 E-value=0.1 Score=25.62 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.31 E-value=0.14 Score=24.47 Aligned_cols=42 Identities=5% Similarity=0.198 Sum_probs=21.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 2799876872667787989999999999986089769998159135
Q 000689 582 LKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLST 627 (1350)
Q Consensus 582 ~~~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 627 (1350)
..+.+++|+|-. ..+. +.+..+.+.+.+. ++.+++|-...+.
T Consensus 133 ~~~~d~~l~~~~-~~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 133 FYEYDFFIIISA-TRFK-KNDIDIAKAISMM--KKEFYFVRTKVDS 174 (400)
T ss_dssp GGGCSEEEEEES-SCCC-HHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HHCCEEEEEECC-CCCC-HHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf 322659999658-8887-8899999999976--9987999708632
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.31 E-value=0.11 Score=25.39 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.++|-||+||||||..++|...|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.067 Score=27.17 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999938999999962877
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+++.++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.22 E-value=0.33 Score=21.44 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH-HC-CCCEEEEEECCCHHHH
Q ss_conf 49988898376778898989999999998-54-9963999815912664
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDR-AC-SGKTTIVVAHRLSTIR 1284 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~L~~-~~-~~~TvI~IaHRl~ti~ 1284 (1350)
.+..++|+||.-++-|++.-..+-.++-+ +. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.20 E-value=0.096 Score=25.86 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 898999986999938999999962877997489999
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLD 490 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~ 490 (1350)
+-..+.|+||.||||||+.+.|...| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 97289998999999899999999985----990885
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.18 E-value=0.079 Score=26.58 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699993899999996287
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7789999999989899999996788
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.12 E-value=0.11 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
++++||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.00 E-value=0.11 Score=25.39 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+++|+|++|+||||+++.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.91 E-value=0.11 Score=25.30 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997889999995137
Q 000689 1114 LALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
|.|+|||||||+||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.87 E-value=0.055 Score=27.84 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCCCCCC
Q ss_conf 489899999599997889999995137-89-95379999951789
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFY-EP-SSGRVMIDGKDIRK 1151 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~-~p-~~G~I~idG~di~~ 1151 (1350)
++|..+-+.|.||||||||.+.|..-+ .. .--.+.+||-+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 998699998999999899999999887774275089975367887
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.87 E-value=0.35 Score=21.23 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf 49988898376778898989999999-99854--996399981591266
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEA-LDRAC--SGKTTIVVAHRLSTI 1283 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~-L~~~~--~~~TvI~IaHRl~ti 1283 (1350)
.+..++|+||.-++-++..-..+-.+ ++.+. .++.+++.+|.....
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 4660885322235877456667898764543204544289852468776
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.18 Score=23.62 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98489899999599997889999995137
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
-+++|+.+-|.|++||||||++.-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.76 E-value=0.12 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|++|+|||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.66 E-value=0.099 Score=25.78 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=58.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 98999995999978899999951378995379999951789997876211188736776675458888613999999999
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESE 1190 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~s~~e 1190 (1350)
-..+.|+|+.||||||+++.|..-| |-+.|+.-| -+|+.+ .+...-....+++-..-+.. ..+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~~-~~~~~ 72 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQI-VPQEI 72 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTCC-CCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCCC-CCCHH
T ss_conf 7289998999999899999999985----990885358-------999886---20101788998876400002-32036
Q ss_pred HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998251899960998754311499998993699999999982149988898376
Q 000689 1191 IIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248 (1350)
Q Consensus 1191 i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiLDEa 1248 (1350)
+.......-...... .-+..+-+ .+-....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~----~~~~~vl~---g~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA----NKHKFLID---GFPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT----TCCEEEEE---TCCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC----CCCCEEEE---CCCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003----77753540---4313689999999861545543125798
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.58 E-value=0.37 Score=21.07 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 998768726677879899999999999860897699981591355
Q 000689 584 NPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI 628 (1350)
Q Consensus 584 ~~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 628 (1350)
+.+++++||.- .+.......+...+........++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.45 E-value=0.11 Score=25.54 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=89.44 E-value=0.12 Score=25.17 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.|+|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=89.42 E-value=0.12 Score=25.10 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.061 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
-.++++|++++|||||++.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.38 E-value=0.12 Score=25.08 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.16 Score=24.13 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 28989999869999389999999628779
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
++|.+++|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.30 E-value=0.14 Score=24.53 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.25 E-value=0.24 Score=22.63 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869999389999999628779
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
+|.++++-|+-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=89.17 E-value=0.16 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+|+++|++|+|||||++.|++-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.13 E-value=0.16 Score=24.15 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.11 E-value=0.24 Score=22.64 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4110279972898999986999938999999962
Q 000689 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 445 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
.++.-.+.+ .|.-+.+.|+||+||||+...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.05 E-value=0.15 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
.+||+|+..+|||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.03 E-value=0.097 Score=25.85 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7289899998699993899999996287
Q 000689 453 VPAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 453 i~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++.+.++.|+||.||||||+.+.|...|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.02 E-value=0.069 Score=27.04 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999938999999962877
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
-++||.|+|||||||+.+.|...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989997809999999999971
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.91 E-value=0.15 Score=24.34 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 489899999599997889999995137899537
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFYEPSSGR 1141 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1141 (1350)
.++-.+-+.||+||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.91 E-value=0.29 Score=21.90 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.17 Score=23.84 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++.|.||.||||||..+.|...|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.79 E-value=0.14 Score=24.56 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899999599997889999995137
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
+.+-++|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.70 E-value=0.33 Score=21.51 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=0.094 Score=25.94 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999995999978899999951378
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.60 E-value=0.17 Score=23.75 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++||-||+||||||++++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.54 E-value=0.15 Score=24.18 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.+||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=88.46 E-value=0.093 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9899998699993899999996287799
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYDPT 483 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~~~ 483 (1350)
.-.++|+|+.|+|||||+..+.+.+...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 3289743899998999999999999756
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.44 E-value=0.17 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999959999788999999513
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
-+|+|+|++|+|||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.43 E-value=0.12 Score=24.95 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 84898999995999978899999951378995379999951789997876211188736776675458888613999999
Q 000689 1108 ARAGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESAT 1187 (1350)
Q Consensus 1108 I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~s 1187 (1350)
++++..+.|.|+.||||||+++.|..-| |-..|+.-++ +|..+. ..+ .....+.+.+.-+. ..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~~---~~~-~~~~~~~~~~~~~~-~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEVS---SGS-ARGKMLSEIMEKGQ-LVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHHH---HTC-HHHHHHHHHHTTTC-CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHHH---HHH-HHHHHHHHHHHHCC-CCC
T ss_conf 4678289998999998799999999986----9846833478-------999998---767-65145677776313-776
Q ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999998251899960998754311499998993699999999982149988898376
Q 000689 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248 (1350)
Q Consensus 1188 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiLDEa 1248 (1350)
++.+....+.. +...+...+..+-+ .+..-..|.-.+.+.+.....+..++.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 22244102456-----64032235660243---1110157899999983775200003331
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.19 Score=23.48 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=55.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99999599997889999995137899537999995178999787621118873677667545888861399999999999
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEII 1192 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~s~~ei~ 1192 (1350)
+|.|+|+.||||||+++.|..-| |-..++. -+-+|..+ .+....+...+.+.+.-+. ...|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCE-EEEECC
Q ss_conf 99998251899960998754311499998993699999999982149--988-898376
Q 000689 1193 EAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRK--AEI-MLLDEA 1248 (1350)
Q Consensus 1193 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~--~~I-LiLDEa 1248 (1350)
...... +........ .-+..+.. |.-. .+.|...+.+.+-.. +.+ +++|.+
T Consensus 68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g~pr--~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKRE-MDQTMAANA-QKNKFLID-GFPR--NQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHH-HHHHHHHCT-TCCEEEEE-SCCC--SHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHH-HCCCCHHHH-CCCCEEEC-CCHH--HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 788876-412100011-24511101-1030--489999986442105543389962476
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=88.37 E-value=0.008 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=28.6
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 411027997289899998699993899999996287
Q 000689 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 445 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+++.++.+.+| ++.|+|+|||||||++.+|.-..
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.34 E-value=0.15 Score=24.19 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999995999978899999951378995379999
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1145 (1350)
.+.|+|++||||||+.+.|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.2 Score=23.23 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4898999995999978899999951378
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++|-.|+|.|+-||||||++++|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.25 E-value=0.19 Score=23.40 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.|+||.||||||+.+.|.-.|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.23 E-value=0.25 Score=22.47 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.15 E-value=0.2 Score=23.20 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 899998699993899999996287799748999996
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGH 492 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~ 492 (1350)
..+.++||+||||||+.+.|.+.+.. +-+.+++-
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d 66 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDND 66 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECH
T ss_conf 79998897998899999999998651--54898328
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.14 E-value=0.19 Score=23.51 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf 9999959999788999999513789953799999517899978762111
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHM 1161 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 1161 (1350)
.+.++|.+||||||+++.|.+.+.. .|.+..-++.+..|..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~-------~~~~~~~~~~D~~r~~~ 45 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF-------IGVPTREFNVGQYRRDM 45 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-------CCCCCEEECCCCEEHHH
T ss_conf 9999899999999999999999974-------69997397453011323
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.11 E-value=0.14 Score=24.51 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.08 E-value=0.19 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.+||+|..||||||+++.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=0.2 Score=23.18 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+++|.|+.|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.2 Score=23.30 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+++|+|..||||||+.+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.06 E-value=0.14 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999995999978899999951378
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
-.|+|-|..||||||++++|.+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.98 E-value=0.2 Score=23.22 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999995137
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
++.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.94 E-value=0.22 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999986999938999999962877
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+|.++++-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.93 E-value=0.2 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.88 E-value=0.14 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999995137
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
++.|.|+.||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.83 E-value=0.21 Score=23.06 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++.|+||.||||||+.+.|+..|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.80 E-value=0.12 Score=25.22 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.79 E-value=0.21 Score=23.03 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999389999999628
Q 000689 457 KTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
..|+|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.75 E-value=0.24 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999995999978899999951378
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
+|..|+|-|.-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=87.72 E-value=0.19 Score=23.48 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEE
Q ss_conf 9369999999998214998889837677889898999-999999854996399981591266403889999498697
Q 000689 1223 SGGQKQRVAIARAFVRKAEIMLLDEATSALDAESERS-VQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVA 1298 (1350)
Q Consensus 1223 SgGQkQrlaLARAlL~~~~ILiLDEaTSaLD~~te~~-I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI~vL~~G~Iv 1298 (1350)
...+...+..+...++++++++++=.-..-+...+.. ..+.++....++.+|++..+.+........--...-.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~ 140 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALI 140 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 52024789999999874133201102565420345554445554201410102046544433558879872799679
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.70 E-value=0.42 Score=20.58 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.64 E-value=0.34 Score=21.38 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4110279972898999986999938999999962
Q 000689 445 ILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 445 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
.++. ++-.-.|.-+.++|+||+||||+...+..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899-99999999999980899998999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.58 E-value=0.11 Score=25.32 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=8.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
+|||+|+-|+|||||+..|.+
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 897438999989999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=0.48 Score=20.09 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999995999978899999951-----3789953
Q 000689 1113 TLALVGPSGCGKSSVIALVQR-----FYEPSSG 1140 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G 1140 (1350)
|++++|.+|+|||||++-+.+ -|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.53 E-value=0.22 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=87.47 E-value=0.14 Score=24.45 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999938999999962877
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+++.|.|++||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=0.29 Score=21.92 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 972898999986999938999999962
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
-+++|+.+.|.|++|+|||||..-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=87.36 E-value=0.23 Score=22.71 Aligned_cols=28 Identities=32% Similarity=0.757 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8989999869999389999999628779
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
.+..+++|||+|+||||.+-=|...+..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~ 32 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 32 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9779999899999889999999999997
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.32 E-value=0.16 Score=23.97 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.++|++||||||+.++|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.24 E-value=0.25 Score=22.52 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+++|.||.||||+|+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.23 E-value=0.22 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
||.++|++|+|||||++-|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.11 E-value=0.23 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+++|||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.06 E-value=0.26 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898999995999978899999951378
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
+|..|+|-|.-||||||++++|.....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.01 E-value=0.47 Score=20.18 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999986999938999999962-----877997489
Q 000689 458 TIALVGSSGSGKSTVVSLIER-----FYDPTSGQV 487 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~-----~~~~~~G~i 487 (1350)
+++++|.+|+|||||++-+.. .|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=0.25 Score=22.39 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.|+|-||.||||+|+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.85 E-value=0.054 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.82 E-value=0.23 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8989999869999389999999628779974899999
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDG 491 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g 491 (1350)
|+.-+.++||+|||||.|.+.|.+.... --+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf 9866999899998888999998621322--1000344
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.81 E-value=0.31 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984898999995999978899999951
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
-+++|+.+-|.|++||||||++.-+.-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=0.24 Score=22.58 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++.++||.||||||..+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.81 E-value=0.34 Score=21.35 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
+++++|+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.62 E-value=0.27 Score=22.17 Aligned_cols=46 Identities=20% Similarity=0.505 Sum_probs=35.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCC
Q ss_conf 899998699993899999996287799748999996078888888743478883678
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKSLKLRWLRQQIGLVSQEP 513 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 513 (1350)
+-+.++||+|||||-|++.|+++.+.. -+..|...++ ..|||..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 647998999988999999999873898--8986255114---------111110444
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.62 E-value=0.26 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.61 E-value=0.24 Score=22.58 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++.++|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.37 E-value=0.27 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 989999869999389999999628
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
.=+++++|..|+|||||++-+.+-
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 579999999998989999999668
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.34 E-value=0.009 Score=34.32 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 32110289848989999959999788999999513
Q 000689 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1100 vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.+++.++.+.+| .+.|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.28 Score=22.05 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.29 E-value=0.17 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899999599997889999995137
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
+.-++++||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.24 E-value=0.16 Score=24.16 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999788999999513
Q 000689 1114 LALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
|||+|++++|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.17 E-value=0.26 Score=22.36 Aligned_cols=37 Identities=16% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 989999959999788999999513789953799999517
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1149 (1350)
+.-+.++||+|+|||.|++.|.+.... --+.+|+.++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 866999899998888999998621322--1000344330
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.11 E-value=0.28 Score=22.09 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
|++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.02 E-value=0.43 Score=20.55 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=17.2
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7997289899998699993899999996
Q 000689 450 SLTVPAGKTIALVGSSGSGKSTVVSLIE 477 (1350)
Q Consensus 450 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~ 477 (1350)
++-.-.|.-+.+.|+||+||||+...+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999999998089999999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.01 E-value=0.5 Score=20.00 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.99 E-value=0.31 Score=21.74 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.+||+|..||||||+++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.87 E-value=0.32 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.|||.|+.||||||+...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=0.28 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
++.|+|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=85.79 E-value=0.17 Score=23.89 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.+.|.|.+||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.69 E-value=0.13 Score=24.83 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.69 E-value=0.31 Score=21.64 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.61 E-value=0.34 Score=21.40 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.59 E-value=0.56 Score=19.56 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.48 E-value=0.34 Score=21.36 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999995137
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.47 E-value=0.45 Score=20.39 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=20.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 728989999869999389999999
Q 000689 453 VPAGKTIALVGSSGSGKSTVVSLI 476 (1350)
Q Consensus 453 i~~g~~~~ivG~sGsGKSTl~~~l 476 (1350)
+++|+.+.|.|++|+|||+|+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 969839999947999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.38 E-value=0.32 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
++||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=85.35 E-value=0.53 Score=19.77 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83211028984898999995999978899999951
Q 000689 1099 PIFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1099 ~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
..++...+.+ .|.-+.|.|+||+||||++..|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.29 E-value=0.3 Score=21.78 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+++||...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.37 Score=21.05 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|+.|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=0.26 Score=22.36 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=28.7
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0279972898999986999938999999962877
Q 000689 448 NFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 448 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
|.=+.+-+|++.+|.|++|+|||||+..+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.02 E-value=0.64 Score=19.13 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCC
Q ss_conf 8999995999978899999951-----37899537-----9999951
Q 000689 1112 KTLALVGPSGCGKSSVIALVQR-----FYEPSSGR-----VMIDGKD 1148 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~-----I~idG~d 1148 (1350)
-||+++|.+|+|||||++.+.. -|.|+.|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 38999998992989999999719888544754211310388317679
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.96 E-value=0.35 Score=21.27 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.93 E-value=0.34 Score=21.36 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999389999999628779
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDP 482 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~ 482 (1350)
.+.+.||+|+||||+++++++.+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.93 E-value=0.38 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899998699993899999996287
Q 000689 455 AGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 455 ~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+..+.|.||.|+|||||++-+....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.89 E-value=0.31 Score=21.70 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.89 E-value=0.36 Score=21.17 Aligned_cols=26 Identities=42% Similarity=0.447 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 999986999938999999962877-99
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD-PT 483 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~-~~ 483 (1350)
.+++||.-+||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.89 E-value=0.39 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97289899998699993899999996
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIE 477 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~ 477 (1350)
-+++|+.+.|.|++|+||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.87 E-value=0.43 Score=20.54 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|.+|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.38 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 972898999986999938999999962
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
-+++|+.+.|.|++|||||++..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.80 E-value=0.37 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999959999788999999513
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.56 E-value=0.38 Score=20.96 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984898999995999978899999951
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
-|++|+.+-|.|++|+|||++..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.53 E-value=0.44 Score=20.47 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98489899999599997889999995
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQ 1132 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1132 (1350)
-+++|+.+-|.|++||||||+..-+.
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.52 E-value=0.5 Score=19.99 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=73.5
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHH
Q ss_conf 83211028-984898999995999978899999-9513789953799999517899978762111887367766754588
Q 000689 1099 PIFRDLSL-RARAGKTLALVGPSGCGKSSVIAL-VQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIY 1176 (1350)
Q Consensus 1099 ~vL~~vsl-~I~~Ge~vaIVG~SGSGKSTL~~l-L~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIr 1176 (1350)
+-|+++-- -+++|+.+-|.|++|+|||+++.- +..........+++... +.+.+..+
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~~------------------ 71 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDII------------------ 71 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHHH------------------
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHH------------------
T ss_conf 779885568996983999994799999999999999999856887420126---67999999------------------
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCC--CCCEEEEECCCCCCC
Q ss_conf 88613999999999999999825189996099875431149999899369-999999998214--998889837677889
Q 000689 1177 ENIAYGHESATESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQ-KQRVAIARAFVR--KAEIMLLDEATSALD 1253 (1350)
Q Consensus 1177 eNL~~~~~~~s~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ-kQrlaLARAlL~--~~~ILiLDEaTSaLD 1253 (1350)
....-.. ...++.....+... ... ....+.-..++... ...+.-.+..++ +++++++|--++-.+
T Consensus 72 ~~~~~~~--~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 72 KNARSFG--WDLAKLVDEGKLFI----LDA------SPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHGGGT--CCHHHHHHTTSEEE----EEC------CCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHCC--CCHHHHHHHCCHHH----HHH------CCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999849--98489887143024----442------10335444430245899999999998863122200207889987
Q ss_pred H----HHHH-HHHHHHHHH-CCCCEEEEEECCCHH---------HH-HCCEEEEEE
Q ss_conf 8----9899-999999985-499639998159126---------64-038899994
Q 000689 1254 A----ESER-SVQEALDRA-CSGKTTIVVAHRLST---------IR-NAHVIAVID 1293 (1350)
Q Consensus 1254 ~----~te~-~I~~~L~~~-~~~~TvI~IaHRl~t---------i~-~~DrI~vL~ 1293 (1350)
. .... .+...++.. ..++|+++++|.... .. .+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=84.46 E-value=0.37 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599997889999995137
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
.|||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.45 E-value=0.38 Score=20.96 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.44 E-value=0.42 Score=20.64 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.41 E-value=0.4 Score=20.77 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=30.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9728989999869999389999999628779974-89999960
Q 000689 452 TVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSG-QVLLDGHD 493 (1350)
Q Consensus 452 ~i~~g~~~~ivG~sGsGKSTl~~~l~~~~~~~~G-~i~i~g~~ 493 (1350)
-+++|.++-+.|++|+||||++..++....-..| -+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.34 E-value=0.36 Score=21.19 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.33 E-value=0.68 Score=18.90 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=84.28 E-value=0.68 Score=18.88 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999938999999962877
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
-..+++|||+|+||||.+-=|...+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.26 E-value=0.32 Score=21.61 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999986999938999999962877997
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~~~ 484 (1350)
.+.+.||+|+||||+++++...+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.25 E-value=0.62 Score=19.21 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 98999986999938999999962877997
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYDPTS 484 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~~~~ 484 (1350)
...+.|.||.|+||||+++.+...+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88168889899989999999999975446
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.16 E-value=0.46 Score=20.28 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=26.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 9999959999788999999513789953799999517
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1149 (1350)
-+-++||.|+||||+++.|.+-+.. +-+.+++-++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~d~~ 68 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDNDTF 68 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEECHHH
T ss_conf 9998897998899999999998651--5489832899
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.13 E-value=0.41 Score=20.68 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8999986999938999999962877997489999
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLD 490 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~~~~G~i~i~ 490 (1350)
.+++|.|+.||||||+.+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.11 E-value=0.4 Score=20.77 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=0.37 Score=21.10 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=37.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCCEE
Q ss_conf 89848989999959999788999999513789953-79999951789997876211188
Q 000689 1106 LRARAGKTLALVGPSGCGKSSVIALVQRFYEPSSG-RVMIDGKDIRKYNLKSLRRHMAI 1163 (1350)
Q Consensus 1106 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~ 1163 (1350)
=-+++|..+-|.|++||||||++.-+..-..-..| -+++|...- ++... -+.+++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~--~~~~~-a~~~Gv 104 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPIY-ARKLGV 104 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCHHH-HHHTTC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCHHH-HHHHCC
T ss_conf 996673589980577747899999999998708987999865445--48999-998399
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.07 E-value=0.43 Score=20.52 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899998699993899999996287
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
=.+.|+||.||||||+.+.|+.-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.04 E-value=0.47 Score=20.18 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 728989999869999389999999628
Q 000689 453 VPAGKTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 453 i~~g~~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
+++|+.+.|.|++|+|||+++.-+.--
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 628859999917999989999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=83.84 E-value=0.71 Score=18.75 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 898999995999978899999951378995379999951789
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRK 1151 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1151 (1350)
++..+++||++|+||||.+.=|...+.-.+-+|.+=..|...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R 46 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 46 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 977999989999988999999999999779907999813666
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.77 E-value=0.47 Score=20.21 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 984898999995999978899999951
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
-+++|+.+-|.|++|+||||++.-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.76 E-value=0.18 Score=23.67 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899999599997889999995137
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
.-+|+|+|++++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.66 E-value=0.44 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=83.62 E-value=0.41 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4898999995999978899999951
Q 000689 1109 RAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1109 ~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
++.=++.+||..|+|||||++-|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.37 E-value=0.73 Score=18.61 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.28 E-value=0.74 Score=18.58 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.74 Score=18.57 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|+.++|.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.46 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.16 E-value=0.75 Score=18.55 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999995999978899999951-----37899537
Q 000689 1113 TLALVGPSGCGKSSVIALVQR-----FYEPSSGR 1141 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r-----l~~p~~G~ 1141 (1350)
|+.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.12 E-value=0.43 Score=20.53 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.11 E-value=0.47 Score=20.23 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999389999999628
Q 000689 458 TIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
++.++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.03 E-value=0.49 Score=20.05 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.94 E-value=0.5 Score=19.96 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999978899999951378
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYE 1136 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~ 1136 (1350)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.85 E-value=0.45 Score=20.39 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=82.81 E-value=0.48 Score=20.16 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=52.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 89999959999788999999513789953799999517899978762111887367766754588886139999999999
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPCLFASTIYENIAYGHESATESEI 1191 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~LF~gTIreNL~~~~~~~s~~ei 1191 (1350)
=++.|+|+-||||||+.+.|..-|. -..|+-- +-+|..+. +..-+...+.+.+..+.. ..++.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~~----~~~~~~~~~~~~~~~~~~-v~~~~~ 70 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNML----RGTEIGVLAKTFIDQGKL-IPDDVM 70 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHHH----TTCHHHHHHHHHHHTTCC-CCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHHH----HHHHHHHHHHHHHHHHHH-CCCHHH
T ss_conf 1699988999987999999999979----8687189-------99999987----401566899987636641-330344
Q ss_pred HHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999998251899960998754311499998993699999999982149988898376
Q 000689 1192 IEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLLDEA 1248 (1350)
Q Consensus 1192 ~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiLDEa 1248 (1350)
....+.. +... ....-.++ | +-.-..|.-.+.+ .+.-..++.||-+
T Consensus 71 ~~l~~~~-~~~~-----~~~~~ild--G--fPr~~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 71 TRLVLHE-LKNL-----TQYNWLLD--G--FPRTLPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHH-HHHH-----TTSCEEEE--S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHH-HHHH-----HHCCCCCC--C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf 5445554-4212-----10584244--5--2100067887631-5753299997244
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.81 E-value=0.52 Score=19.85 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+.+.||.||||||+.+.|.-.|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=82.73 E-value=0.77 Score=18.42 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999986999938999999962877
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
...+.++||+|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.63 E-value=0.61 Score=19.29 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 9999959999788999999513789953799999517
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1149 (1350)
.+-+.||+|+||||+++++.+-.... -+.++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~ 88 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDV 88 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 49998799998889999999998751--201344322
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.61 E-value=0.49 Score=20.07 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.52 E-value=0.79 Score=18.37 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.49 E-value=0.49 Score=20.04 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=14.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 289899998699993899999996287
Q 000689 454 PAGKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 454 ~~g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
++|.++++.|+-||||||+++.+.+-+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=82.49 E-value=0.77 Score=18.45 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699993899999996287
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.-.++|.|+.|+|||||+.-+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=82.41 E-value=0.61 Score=19.26 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9848989999959999788999999513789
Q 000689 1107 RARAGKTLALVGPSGCGKSSVIALVQRFYEP 1137 (1350)
Q Consensus 1107 ~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1137 (1350)
..+||..+.+.|.=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.41 E-value=0.79 Score=18.34 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=33.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998889837677889898999999999854996399981591266
Q 000689 1239 KAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTI 1283 (1350)
Q Consensus 1239 ~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1283 (1350)
+.+++++||+-. +.......+.+.+.+....+..|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.40 E-value=0.53 Score=19.76 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899999599997889999995137
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
.+..+.|.|++|+|||||++-+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.36 E-value=0.8 Score=18.32 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 98768726677879899999999999860897699981591355
Q 000689 585 PAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTI 628 (1350)
Q Consensus 585 ~~illLDE~ts~lD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 628 (1350)
.+++++||+=. |..+....+.+.+.........|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 87999978110-89999999999985689886999973885636
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.24 E-value=0.54 Score=19.71 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.16 E-value=0.69 Score=18.83 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 989999959999788999999513789953
Q 000689 1111 GKTLALVGPSGCGKSSVIALVQRFYEPSSG 1140 (1350)
Q Consensus 1111 Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1140 (1350)
...+-|.|+.|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.10 E-value=0.81 Score=18.25 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3211028984898999995999978899999951
Q 000689 1100 IFRDLSLRARAGKTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1100 vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
.++...+ --.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.06 E-value=0.76 Score=18.48 Aligned_cols=28 Identities=43% Similarity=0.610 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf 99998699993899999996--28779974
Q 000689 458 TIALVGSSGSGKSTVVSLIE--RFYDPTSG 485 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~--~~~~~~~G 485 (1350)
++.++|.+|+|||||++-+. ..+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.97 E-value=0.55 Score=19.61 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699993899999996287
Q 000689 458 TIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
.+||||...+|||||++.|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.85 E-value=0.55 Score=19.62 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=81.83 E-value=0.45 Score=20.33 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCEEEEC
Q ss_conf 89999869999389999999-62877997489999
Q 000689 457 KTIALVGSSGSGKSTVVSLI-ERFYDPTSGQVLLD 490 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l-~~~~~~~~G~i~i~ 490 (1350)
..+.|+|++|||||++++.+ ...+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 65899907999689999999999984799889996
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=81.81 E-value=0.31 Score=21.66 Aligned_cols=38 Identities=29% Similarity=0.503 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 89999959999788999999513789953799999517
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDI 1149 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di 1149 (1350)
..+++||++|+||||.+.=|...+.-..-+|.+=..|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 79999899999989999999999997799479982321
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.81 E-value=0.44 Score=20.40 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999869999389999999628
Q 000689 457 KTIALVGSSGSGKSTVVSLIERF 479 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~ 479 (1350)
=+++|||-..+|||||++.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=81.67 E-value=0.57 Score=19.53 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=12.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 89999959999788999999513
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
-++||.|+=|+|||||+..|.+.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.60 E-value=0.62 Score=19.22 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999959999788999999513789953799999
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFYEPSSGRVMIDG 1146 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG 1146 (1350)
++.|.|+-||||||+.+.|.--| |-..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.57 E-value=0.58 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.55 E-value=0.55 Score=19.67 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.53 E-value=0.53 Score=19.75 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999938999999962877
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.+.+.||+|+||||+++.+...+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.50 E-value=0.52 Score=19.82 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 4998889837677889898999999999854996399981591266
Q 000689 1238 RKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTI 1283 (1350)
Q Consensus 1238 ~~~~ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1283 (1350)
.+..++++||.- .+.......+...+......+..|.++++.+.+
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHC
T ss_conf 872288614344-312147898764112477644788614876656
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=81.42 E-value=0.59 Score=19.38 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 9999599997889999995137899537999995178
Q 000689 1114 LALVGPSGCGKSSVIALVQRFYEPSSGRVMIDGKDIR 1150 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 1150 (1350)
+-+.||.|+||||++++|..-+.... +.+++.+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~~ 72 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVLV 72 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCC
T ss_conf 89879999738899999985038885--332574422
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.18 E-value=0.56 Score=19.58 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|.+|+|||||++-+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899388999999971
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.12 E-value=0.55 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699993899999996287
Q 000689 459 IALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 459 ~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
+.+.||+|+||||+++.+.+.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.07 E-value=0.55 Score=19.62 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8999995999978899999951378995379999
Q 000689 1112 KTLALVGPSGCGKSSVIALVQRFYEPSSGRVMID 1145 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~id 1145 (1350)
..+||+|.-||||||+++.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.97 E-value=0.88 Score=17.96 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999869999389999999628779974
Q 000689 458 TIALVGSSGSGKSTVVSLIERFYDPTSG 485 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~~~~~~~G 485 (1350)
++.++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.96 E-value=0.68 Score=18.87 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|..|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.95 E-value=0.88 Score=17.95 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.95 E-value=0.53 Score=19.75 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9899998699993899999996287
Q 000689 456 GKTIALVGSSGSGKSTVVSLIERFY 480 (1350)
Q Consensus 456 g~~~~ivG~sGsGKSTl~~~l~~~~ 480 (1350)
=..|+|+|+.++|||||++.|.|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.92 E-value=0.61 Score=19.28 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.92 E-value=0.58 Score=19.46 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=80.90 E-value=0.61 Score=19.26 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999788999999513
Q 000689 1113 TLALVGPSGCGKSSVIALVQRF 1134 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl 1134 (1350)
.|||+|+..+|||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.88 E-value=0.61 Score=19.25 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=80.87 E-value=0.42 Score=20.59 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.4
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 102898489899999599997889999995137
Q 000689 1103 DLSLRARAGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1103 ~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
|.=+.|-+|++.+|+|++|+|||||+.-+.+-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.62 Score=19.22 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|..|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=0.79 Score=18.33 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|.+|+|||||++-+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.69 E-value=0.36 Score=21.12 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999986999938999999962
Q 000689 457 KTIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
=+++++|++|+|||||++-+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999988999988733
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=0.65 Score=19.06 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.54 E-value=0.57 Score=19.49 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599997889999995137
Q 000689 1114 LALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1114 vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.54 E-value=0.67 Score=18.96 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.52 E-value=0.69 Score=18.81 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
+++++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.47 E-value=0.91 Score=17.84 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999978899999951
Q 000689 1113 TLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
|++++|..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.47 E-value=0.68 Score=18.90 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 69999999998214998--88983767788989899999999985499639998159
Q 000689 1225 GQKQRVAIARAFVRKAE--IMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHR 1279 (1350)
Q Consensus 1225 GQkQrlaLARAlL~~~~--ILiLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR 1279 (1350)
.+.+...+++..+.++. |++...++..........+.+.++. ...+|+.++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEEEECC
T ss_conf 89999999999982777516876325631003499999997386-788589998204
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=80.46 E-value=0.55 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8999995999978899999951
Q 000689 1112 KTLALVGPSGCGKSSVIALVQR 1133 (1350)
Q Consensus 1112 e~vaIVG~SGSGKSTL~~lL~r 1133 (1350)
=+++++|+.|+|||||++-+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=80.31 E-value=0.65 Score=19.05 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8999986999938999999962877
Q 000689 457 KTIALVGSSGSGKSTVVSLIERFYD 481 (1350)
Q Consensus 457 ~~~~ivG~sGsGKSTl~~~l~~~~~ 481 (1350)
.-+.+.||.|+|||++++.+.+...
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=80.24 E-value=0.28 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89899999599997889999995137
Q 000689 1110 AGKTLALVGPSGCGKSSVIALVQRFY 1135 (1350)
Q Consensus 1110 ~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1135 (1350)
+-..+++|||+|+||||.+.=|...+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.12 E-value=0.64 Score=19.11 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=90.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCC-CCCCCHHHHH--CCCCCCCC
Q ss_conf 99999599997889999995137--8995379999951789997876211188736776-6754588886--13999999
Q 000689 1113 TLALVGPSGCGKSSVIALVQRFY--EPSSGRVMIDGKDIRKYNLKSLRRHMAIVPQEPC-LFASTIYENI--AYGHESAT 1187 (1350)
Q Consensus 1113 ~vaIVG~SGSGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~l~~lR~~i~~VpQdp~-LF~gTIreNL--~~~~~~~s 1187 (1350)
.+||+|+.|+|||||+..|+..- ....|++. +|..+.++..++..+.+++-..-.. .+.+ .+-|+ +||..+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHH
Q ss_conf 9999999998251899960998754311499998993699999999982149988898---3767788989899999999
Q 000689 1188 ESEIIEAARLANADKFISSLPDGYKTFVGERGVQLSGGQKQRVAIARAFVRKAEIMLL---DEATSALDAESERSVQEAL 1264 (1350)
Q Consensus 1188 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQkQrlaLARAlL~~~~ILiL---DEaTSaLD~~te~~I~~~L 1264 (1350)
.|+..++..+..-=+ .|. .-.....+-++.+-.|+.. +-|.++++ |.+ + |.. . +.+.+
T Consensus 82 -~e~~~al~~~D~avl----------vvd-a~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~-~l~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADAALV----------AVS-AEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--A-LLEDL 142 (267)
T ss_dssp -HHHHHHHHHCSEEEE----------EEE-TTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--H-HHHHH
T ss_pred -HHHHHHHCCCCCEEE----------EEE-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--H-HHHHH
T ss_conf -556543124673389----------842-3577421157887765540-44310133320222--2-101--2-34468
Q ss_pred HHHCCCCEEEEEEC----CCHHHH--HCCEEEEEECCEEEEECCHHHHH
Q ss_conf 98549963999815----912664--03889999498697806946774
Q 000689 1265 DRACSGKTTIVVAH----RLSTIR--NAHVIAVIDDGKVAELGSHSHLL 1307 (1350)
Q Consensus 1265 ~~~~~~~TvI~IaH----Rl~ti~--~~DrI~vL~~G~Ive~Gt~~eLl 1307 (1350)
++.+....-+.+-. ....+. ...+.+..++|.-.+.--|.++.
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~ 191 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEER 191 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGH
T ss_pred HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHH
T ss_conf 8874658676860025883268762476548996189874540777789
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.73 Score=18.62 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999938999999962
Q 000689 458 TIALVGSSGSGKSTVVSLIER 478 (1350)
Q Consensus 458 ~~~ivG~sGsGKSTl~~~l~~ 478 (1350)
++.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|