Citrus Sinensis ID: 000700
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1344 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YQ1 | 1344 | Regulatory-associated pro | yes | no | 0.986 | 0.986 | 0.787 | 0.0 | |
| Q9LZW9 | 1336 | Regulatory-associated pro | no | no | 0.966 | 0.972 | 0.723 | 0.0 | |
| Q0IQN5 | 1359 | Regulatory-associated pro | yes | no | 0.982 | 0.972 | 0.694 | 0.0 | |
| C7J8E5 | 1218 | Regulatory-associated pro | yes | no | 0.888 | 0.980 | 0.711 | 0.0 | |
| Q8N122 | 1335 | Regulatory-associated pro | yes | no | 0.902 | 0.908 | 0.421 | 0.0 | |
| Q8K4Q0 | 1335 | Regulatory-associated pro | yes | no | 0.890 | 0.896 | 0.413 | 0.0 | |
| P87141 | 1313 | WD repeat-containing prot | yes | no | 0.509 | 0.521 | 0.470 | 0.0 | |
| Q55BR7 | 1509 | Protein raptor homolog OS | yes | no | 0.334 | 0.297 | 0.576 | 1e-156 | |
| P38873 | 1557 | Target of rapamycin compl | yes | no | 0.242 | 0.209 | 0.468 | 2e-92 | |
| Q0DJA3 | 437 | Double-stranded RNA-bindi | no | no | 0.060 | 0.185 | 0.817 | 1e-33 |
| >sp|Q93YQ1|RTOR1_ARATH Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2085 bits (5401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1355 (78%), Positives = 1177/1355 (86%), Gaps = 29/1355 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTP 232
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNK YIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 233 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 292
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 293 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 413 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 472
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 473 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 592
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 593 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 652
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 653 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 712
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 713 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 771
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 772 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 830
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 831 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 890
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 891 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 950
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 951 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1010
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1011 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1069
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1070 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1130 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1309
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRY-YP 1302
Query: 1310 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
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Probable component of the plant TOR kinase pathway that recruits substrates for TOR. Modulates plant cell growth and regulates the activity of ATPK1 kinase in response to osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZW9|RTOR2_ARATH Regulatory-associated protein of TOR 2 OS=Arabidopsis thaliana GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1940 bits (5025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 994/1373 (72%), Positives = 1126/1373 (82%), Gaps = 74/1373 (5%)
Query: 1 MALGDLMASRFSQSAV--VSNHLNDD----CGSAHGD--VDLRRDSDTASSSYTNNASVT 52
MALGDLM SR SQS+V V+NHL DD SAH D V + ASSSY N
Sbjct: 1 MALGDLMVSRLSQSSVTVVTNHLYDDDDNCASSAHDDSRVSIIASPRVASSSYEN----- 55
Query: 53 TITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLC 112
+ TS+AYLPQT+VLC+LRH+ +AS P +WR K+RMKTGCVALV+C
Sbjct: 56 ---LSAATSMAYLPQTLVLCDLRHD--DASDIVQPP------RWRLKERMKTGCVALVMC 104
Query: 113 LNISVDPPDVIKISPCARMECWIDPFSM-APQKALETIGKNLSQQYERWQPRARYKVQLD 171
L+I+VDPPDVIKISPCAR+ECWIDPFSM P++ALE IG+NLS QYERW RARYKV+LD
Sbjct: 105 LHITVDPPDVIKISPCARLECWIDPFSMFPPRRALEAIGQNLSIQYERWLARARYKVELD 164
Query: 172 PTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDS 227
PT D+V+KLC +CR+YAK ERVLFHYNGHGVPKPT NGEIW++NK YIPLP+S+LDS
Sbjct: 165 PTKDDVRKLCLSCRKYAKTERVLFHYNGHGVPKPTPNGEIWVYNKNFTQYIPLPVSELDS 224
Query: 228 WLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPA 287
WLKTP+IYVFDCSAA +I+NAF E SG +DCILLAAC+ HETLPQS EFPA
Sbjct: 225 WLKTPTIYVFDCSAARVILNAFAE------GESSGPPKDCILLAACDVHETLPQSVEFPA 278
Query: 288 DVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDT 347
DVFTSCLTTPI +AL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDT
Sbjct: 279 DVFTSCLTTPINIALKWFCRRSLLKEFIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDT 338
Query: 348 IAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAW 407
IAWNVLP +LFQRLFRQDLLVASLFRNFLLAERIMRS NC+PISHPMLPPTHQHHMWDAW
Sbjct: 339 IAWNVLPRELFQRLFRQDLLVASLFRNFLLAERIMRSGNCTPISHPMLPPTHQHHMWDAW 398
Query: 408 DMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 467
DMAAEICLSQLP DPN E+QPS FF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL
Sbjct: 399 DMAAEICLSQLPQFFLDPNTEFQPSSFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLL 458
Query: 468 SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILAL 527
SQCHR+RALVLLGRFLDMGPWAVDLALSVGI+P V+KLLQTTT ELRQILVFIWTKILAL
Sbjct: 459 SQCHRYRALVLLGRFLDMGPWAVDLALSVGIYPCVVKLLQTTTIELRQILVFIWTKILAL 518
Query: 528 DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHV 587
DKSCQVDLVKD GH YFIRFLDS +A+PEQRAMAAF+LAVIVDG++RGQE+C+EA LI V
Sbjct: 519 DKSCQVDLVKDRGHIYFIRFLDSSDAFPEQRAMAAFILAVIVDGYKRGQESCLEANLIAV 578
Query: 588 CLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP----AIYVPLLSE 643
CL HL+ + D EPLFLQWLCLCLGKLWED+ EAQ +GR A+A A + LL
Sbjct: 579 CLGHLEATQLCDPPPEPLFLQWLCLCLGKLWEDYLEAQIMGREANASENLIAGHTNLL-- 636
Query: 644 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPL 703
+VRA+AVF+LGTLLD+GFDS + GV DEE DDDE I +I II+SLL VVSDGSPL
Sbjct: 637 ---QVRAAAVFALGTLLDVGFDSGK-GV-CDEEFDDDENIVEDI-IIKSLLDVVSDGSPL 690
Query: 704 VRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGP 763
VR EVAVALARFAFGHKQHLKS+A +Y KPQ NSL SLPS+A +G+ + SS +G
Sbjct: 691 VRTEVAVALARFAFGHKQHLKSVADSYWKPQ-NSLRTSLPSMAKFHDSGTSIVASSDMGS 749
Query: 764 LTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMR 821
LTR ++ V R+GR+S+S +GLM GSPL+DDSS HSD GI++DGVSNGVV+ +
Sbjct: 750 LTRASPDSQPVAREGRISSSLQEPFSGLMQGSPLADDSSLHSDVGIIHDGVSNGVVH--Q 807
Query: 822 PKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDP 881
P+PLD+AIYSQ VLAM TLAKDPSPRIA+LGRRVLS+IGIEQ+V KP S G RPG+
Sbjct: 808 PRPLDNAIYSQSVLAMFTLAKDPSPRIASLGRRVLSVIGIEQIVAKPSKSNG---RPGEA 864
Query: 882 TTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLIN 941
+A+ TP LAGLVRSSSWFDM+ GHLPL FRTPPVSPP+ S+L G+RRVCSLE RPHL+
Sbjct: 865 ASASHTP-LAGLVRSSSWFDMHTGHLPLTFRTPPVSPPQTSYLTGLRRVCSLELRPHLLG 923
Query: 942 SPDSGLADPLLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREER 1000
SPDSGLADP+LG SG SERSLLP STIYNWSCGHFSKPLL AD EEI A+REE+
Sbjct: 924 SPDSGLADPILGVSG-----SERSLLPQSTIYNWSCGHFSKPLLGGADANEEIAAQREEK 978
Query: 1001 EKFALEHIAKCQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWN 1059
+KF+LEHIAKCQ SS+S L+N PIA WDT+FE GTKTALL PFSPIVVAADENERI++WN
Sbjct: 979 KKFSLEHIAKCQHSSISGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWN 1038
Query: 1060 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN--------GNIRIWKDYDQK 1111
YEE TLLN FDN+DFPDKGIS LCLVNELD SLLLVASCN IRIWKDY K
Sbjct: 1039 YEEATLLNGFDNNDFPDKGISNLCLVNELDDSLLLVASCNVPTLSRASFAIRIWKDYATK 1098
Query: 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1171
+QKLVT FSSIQG KPG N VVDWQQQSGYLY SGE SIM+WDL+KE Q+V +P
Sbjct: 1099 GRQKLVTGFSSIQGQKPGASGLNAVVDWQQQSGYLYVSGESLSIMVWDLDKE-QLVKSMP 1157
Query: 1172 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1231
S CS++AL+ASQVHG QLAAGF DGSVRLYDVRTPD LVC+TRPH Q+VE+VVG+SFQ
Sbjct: 1158 FESGCSVTALSASQVHGSQLAAGFADGSVRLYDVRTPDFLVCATRPH-QRVEKVVGLSFQ 1216
Query: 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1291
PGLDPAKIVSASQAGDIQFLD+R K+ YLTIDAHRGSL+AL VHRHAPIIASGSAKQLI
Sbjct: 1217 PGLDPAKIVSASQAGDIQFLDLRRPKETYLTIDAHRGSLTALGVHRHAPIIASGSAKQLI 1276
Query: 1292 KVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
KVFSL+GEQLG I+Y H SFM Q+IG V+CL FHPYQ+LLAAG+A + VS+++
Sbjct: 1277 KVFSLKGEQLGIIKY-HTSFMGQQIGPVSCLAFHPYQMLLAAGAAGSFVSLYT 1328
|
Probable component of the plant TOR kinase pathway. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0IQN5|RTOR1_ORYSJ Regulatory-associated protein of TOR 1 OS=Oryza sativa subsp. japonica GN=RAPTOR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1864 bits (4829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1375 (69%), Positives = 1107/1375 (80%), Gaps = 54/1375 (3%)
Query: 1 MALGDLMASRFSQSAVV------------SNHLNDDCGSAHGDVDLRRDSDTASSSYTNN 48
MALGDLMASR S+ +NHL DD D RRD
Sbjct: 1 MALGDLMASRLVHSSSSSAAPSAALPNHHTNHLVDDHLPVENGPDPRRDVPDEEPPPPPP 60
Query: 49 ASVTTITTTTTTSLAYLPQTVVLCELRHEAFE--ASTPSGPSDSGLVSKWRPKDRMKTGC 106
V A LPQ VVLCE RHE F+ A+ +GPS SG VSKWRPKDRMKTGC
Sbjct: 61 PQV-----------ALLPQVVVLCEQRHEGFDEAAAAAAGPSTSGPVSKWRPKDRMKTGC 109
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
VALVLCLNISVDPPDVIKISPCAR ECWIDPFSMAP KALETIGK L QYERWQP+ARY
Sbjct: 110 VALVLCLNISVDPPDVIKISPCARKECWIDPFSMAPPKALETIGKTLHSQYERWQPKARY 169
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPI 222
K+QLDPT++EVKKLCNTCR++A+ ERVLFHYNGHGVPKPTANGEIW+FNK YIPLPI
Sbjct: 170 KLQLDPTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPI 229
Query: 223 SDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQS 282
+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW +S+ + S++DCILLAACEAH+TLPQS
Sbjct: 230 TDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDWSSSSSASSSKDCILLAACEAHQTLPQS 289
Query: 283 EEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFT 342
EFPADVFT+CLTTPI MAL WFC RSLL +S++++LID+IPGRQ DR+TLLGELNWIFT
Sbjct: 290 AEFPADVFTACLTTPIKMALHWFCNRSLLRDSMEHNLIDQIPGRQNDRKTLLGELNWIFT 349
Query: 343 AVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHH 402
A+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPIS+P+LPPTHQHH
Sbjct: 350 AITDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISYPLLPPTHQHH 409
Query: 403 MWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIV 462
MWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF+EQLTAFEVWLDHGSE KKPPEQLPIV
Sbjct: 410 MWDAWDMAAEICLSKLPQLIADPNAEFQPSPFFTEQLTAFEVWLDHGSEDKKPPEQLPIV 469
Query: 463 LQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWT 522
LQVLLSQ HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT+ ELRQILVFIWT
Sbjct: 470 LQVLLSQSHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTSAMELRQILVFIWT 529
Query: 523 KILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEA 582
KIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYPEQRAMAAFVLAVIVDGHR GQEAC A
Sbjct: 530 KILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYPEQRAMAAFVLAVIVDGHRIGQEACANA 589
Query: 583 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS 642
GLI VCL+HLQ PNDAQTEPL LQWLCLCLGKLWEDF EAQ +G +++AP I + LLS
Sbjct: 590 GLIDVCLRHLQPENPNDAQTEPLLLQWLCLCLGKLWEDFPEAQLLGLQSNAPEIVICLLS 649
Query: 643 EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSP 702
EPQPEVRASAVF+LG L+DIG S + ++ DEK+RAEI+++RSLL + SDGSP
Sbjct: 650 EPQPEVRASAVFALGNLVDIGSPSLNGADDDSDD---DEKVRAEINVVRSLLQISSDGSP 706
Query: 703 LVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTG---------S 753
LVR+EVAVAL RFA GH +H+KS+AA Y KPQ+NSLL SLPSLA+I ++
Sbjct: 707 LVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQTNSLLKSLPSLANINSSNVYSPSSLIQG 766
Query: 754 GSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGI-LND 810
S ++S IGP+ RVG N A RDGR+STSSP+A +MHGSP SDDSSQHSDSGI L +
Sbjct: 767 SSGLASHIGPVLRVGSDNSATARDGRISTSSPIATNSIMHGSPQSDDSSQHSDSGILLRE 826
Query: 811 GVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVM 870
SNG +N+ R +P+D+ IYSQ + MC +AKDP PRIA++G+R LS+IG+EQV +
Sbjct: 827 NASNGGLNYSRSRPIDNGIYSQFIATMCNVAKDPYPRIASIGKRALSLIGVEQVSMRNSR 886
Query: 871 SMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRV 930
+ PG+ T+ P S G+ RSSSWFDMN G+ + FRTPPVSPP+ +L G+RRV
Sbjct: 887 LSNGGAHPGE--TSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPPQHDYLTGLRRV 944
Query: 931 CSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDT 990
CS+EFRPH++NSPD GLADPLL S + +LP S IY WSCGHFS+PLLT +DD
Sbjct: 945 CSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGLYILPQSLIYRWSCGHFSRPLLTGSDDN 1003
Query: 991 EEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAAD 1050
EE ARREERE+ A++ IAKCQRSS K+ + IA WDTRFE GTK +LL PFSPIVVAAD
Sbjct: 1004 EEANARREERERIAMDCIAKCQRSSC-KMTSQIASWDTRFELGTKASLLLPFSPIVVAAD 1062
Query: 1051 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110
ENE+I++WNY++ +N+F+NH D+G+SKL L+NELD SLLLV S +GN+RIW++Y Q
Sbjct: 1063 ENEQIRVWNYDDALPVNTFENHKLSDRGLSKLLLINELDDSLLLVGSSDGNVRIWRNYTQ 1122
Query: 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI 1170
K QKLVTAFSS+QG++ R ++V DWQQQSGYLYASG++SSI++WDL+KEQ VN I
Sbjct: 1123 KGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQSGYLYASGDMSSILVWDLDKEQ--VNTI 1178
Query: 1171 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230
S++D ISAL+ASQV GQ AAGF+D SVR++DVRTPD LV + RPH + E+VVGI F
Sbjct: 1179 QSTADSGISALSASQVRCGQFAAGFLDASVRIFDVRTPDRLVYTARPHAPRSEKVVGIGF 1238
Query: 1231 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL 1290
QPG DP KIVSASQAGDIQFLD+R + YLTI+AHRGSL+ALAVHRHAP+IASGSAKQ+
Sbjct: 1239 QPGFDPYKIVSASQAGDIQFLDVRRASEPYLTIEAHRGSLTALAVHRHAPVIASGSAKQM 1298
Query: 1291 IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD-ACVSIHS 1344
IKVFSLEGEQL IRY PSFM Q+IGSVNCL+FH Y+ LLAAG+ D A VSI++
Sbjct: 1299 IKVFSLEGEQLTIIRY-QPSFMGQRIGSVNCLSFHRYKSLLAAGAGDNALVSIYA 1352
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|C7J8E5|RTOR2_ORYSJ Regulatory-associated protein of TOR 2 OS=Oryza sativa subsp. japonica GN=RAPTOR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1732 bits (4485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1222 (71%), Positives = 1017/1222 (83%), Gaps = 28/1222 (2%)
Query: 140 MAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNG 199
MAP KALETIGK L QYERWQP+ARYK+QLDPT++EVKKLCNTCR++A+ ERVLFHYNG
Sbjct: 1 MAPPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEVKKLCNTCRKFARTERVLFHYNG 60
Query: 200 HGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDW 255
HGVPKPTANGEIW+FNK YIPLPI+DLDSWLKTPSIYVFDCSAAGMIV AF+E DW
Sbjct: 61 HGVPKPTANGEIWVFNKSYTQYIPLPITDLDSWLKTPSIYVFDCSAAGMIVKAFLERLDW 120
Query: 256 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 315
+S+ + S++DCILLAACEAH+TLPQS EFPADVFT+CLTTPI MAL WFC RSLL +S+
Sbjct: 121 SSSSSASSSKDCILLAACEAHQTLPQSAEFPADVFTACLTTPIKMALHWFCNRSLLRDSM 180
Query: 316 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 375
+++LID+IPGRQ DR+TLLGELNWIFTA+TDTIAWNVLPHDLFQRLFRQDLLVASLFRNF
Sbjct: 181 EHNLIDQIPGRQNDRKTLLGELNWIFTAITDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 240
Query: 376 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 435
LLAERIMRSANCSPIS+P+LPPTHQHHMWDAWDMAAEICLS+LP L+ADPNAE+QPSPFF
Sbjct: 241 LLAERIMRSANCSPISYPLLPPTHQHHMWDAWDMAAEICLSKLPQLIADPNAEFQPSPFF 300
Query: 436 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 495
+EQLTAFEVWLDHGSE KKPPEQLPIVLQVLLSQ HRFRALVLLGRFLDMGPWAVDLALS
Sbjct: 301 TEQLTAFEVWLDHGSEDKKPPEQLPIVLQVLLSQSHRFRALVLLGRFLDMGPWAVDLALS 360
Query: 496 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 555
VGIFPYVLKLLQT+ ELRQILVFIWTKIL+LDKSCQVDLVKDGGHAYFIRFLDS++AYP
Sbjct: 361 VGIFPYVLKLLQTSAMELRQILVFIWTKILSLDKSCQVDLVKDGGHAYFIRFLDSLDAYP 420
Query: 556 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 615
EQRAMAAFVLAVIVDGHR GQEAC AGLI+VCL+HLQ PNDAQTEPL LQWLCLCLG
Sbjct: 421 EQRAMAAFVLAVIVDGHRVGQEACANAGLIYVCLRHLQPENPNDAQTEPLLLQWLCLCLG 480
Query: 616 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDE 675
KLWEDF EAQ +G +++AP I + LLSEPQPEVRASAVF+LG L+DIG S + +
Sbjct: 481 KLWEDFPEAQLLGLQSNAPEIVICLLSEPQPEVRASAVFALGNLVDIGSPSLNGADDDSD 540
Query: 676 ECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQS 735
+ DEK+RAEI+++RSLL + SDGSPLVR+EVAVAL RFA GH +H+KS+AA Y KPQ+
Sbjct: 541 D---DEKVRAEINVVRSLLQISSDGSPLVRSEVAVALTRFAMGHNKHIKSVAAEYWKPQT 597
Query: 736 NSLLGSLPSLAHIKTTG---------SGSIVSSQIGPLTRVG--NEAVVRDGRVSTSSPL 784
NSLL SLPSLA+I ++ S ++S IGP+ RVG N A RDGR+STSSP+
Sbjct: 598 NSLLKSLPSLANINSSNVYSPSSLIQGSSGLASHIGPVLRVGSDNSATARDGRISTSSPI 657
Query: 785 ANAGLMHGSPLSDDSSQHSDSGI-LNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKD 843
A +MHGSP SDDSSQHSDSGI L + SNG +N+ R +P+D+ IYSQ + MC +AKD
Sbjct: 658 ATNSIMHGSPQSDDSSQHSDSGILLRENASNGGLNYSRSRPIDNGIYSQFIATMCNVAKD 717
Query: 844 PSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMN 903
P PRIA++G+R LS+IG+EQV + + PG+ T+ P S G+ RSSSWFDMN
Sbjct: 718 PYPRIASIGKRALSLIGVEQVSMRNSRLSNGGAHPGE--TSVPPSSNFGMARSSSWFDMN 775
Query: 904 GGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSER 963
G+ + FRTPPVSPP+ +L G+RRVCS+EFRPH++NSPD GLADPLL S +
Sbjct: 776 SGNFSMAFRTPPVSPPQHDYLTGLRRVCSMEFRPHVLNSPD-GLADPLLSSSAAPSNMGL 834
Query: 964 SLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPI 1023
+LP S IY WSCGHFS+PLLT +DD EE ARREERE+ A++ IAKCQRSS K+ + I
Sbjct: 835 DILPQSLIYRWSCGHFSRPLLTGSDDNEEANARREERERIAMDCIAKCQRSSC-KMTSQI 893
Query: 1024 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLC 1083
A WDTRFE GTK +LL PFSPIVVAADENE+I++WNY++ +N+F+NH D+G+SKL
Sbjct: 894 ASWDTRFELGTKASLLLPFSPIVVAADENEQIRVWNYDDALPVNTFENHKLSDRGLSKLL 953
Query: 1084 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143
L+NELD SLLLV S +GN+RIW++Y QK QKLVTAFSS+QG++ R ++V DWQQQS
Sbjct: 954 LINELDDSLLLVGSSDGNVRIWRNYTQKGGQKLVTAFSSVQGYRSAGR--SIVFDWQQQS 1011
Query: 1144 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1203
GYLYASG++SSI++WDL+KE Q+VN I S++D ISAL+ASQV GQ AAGF+D SVR++
Sbjct: 1012 GYLYASGDMSSILVWDLDKE-QLVNTIQSTADSGISALSASQVRCGQFAAGFLDASVRIF 1070
Query: 1204 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263
DVRTPD LV + RPH + E+VVGI FQPG DP KIVSASQAGDIQFLD+R + YLTI
Sbjct: 1071 DVRTPDRLVYTARPHAPRSEKVVGIGFQPGFDPYKIVSASQAGDIQFLDVRRASEPYLTI 1130
Query: 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1323
+AHRGSL ALAVHRHAP+IASGSAKQ+IKVFSLEGEQL IRY PSFM Q+IGSVNCL+
Sbjct: 1131 EAHRGSLMALAVHRHAPVIASGSAKQMIKVFSLEGEQLTIIRY-QPSFMGQRIGSVNCLS 1189
Query: 1324 FHPYQVLLAAGSAD-ACVSIHS 1344
FH Y+ LLAAG+ D A VSI++
Sbjct: 1190 FHRYKSLLAAGAGDNALVSIYA 1211
|
Probable component of the plant TOR kinase pathway. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8N122|RPTOR_HUMAN Regulatory-associated protein of mTOR OS=Homo sapiens GN=RPTOR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/1325 (42%), Positives = 763/1325 (57%), Gaps = 112/1325 (8%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 252
W+FNK YIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 253 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 310
H S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 311 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 369
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 370 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 429
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 430 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 489
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 490 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 549
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 550 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 609
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQW 576
Query: 610 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 669
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 670 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 729
E D I ++++ L +VSDGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLVSDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 730 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-------RVGNEAVVRDGRVSTSS 782
+ + + N +LPS A TT GS+ + P T GN V R S +
Sbjct: 685 FIEEEKNY---ALPSPA---TTEGGSLTPVRDSPCTPRLRSVSSYGNIRAVATAR-SLNK 737
Query: 783 PLANAGLMHGS--------------------PLSDDSSQHSDSGILNDGV----SNGVVN 818
L N L S S ++ +H S D + S +N
Sbjct: 738 SLQNLSLTEESGGAVAFSPGNLSTSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLN 797
Query: 819 HMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRP 878
+ +S +Y+Q + LA DP P ++ + +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNS-VYTQIWRVLLHLAADPYPEVSDVAMKVLNSIAYKATVNARPQRVLDTSSL 856
Query: 879 GDPTTAAPTPSLAGLVRSSS---WFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 935
A+PT + ++ + L PVS S PG ++
Sbjct: 857 TQSAPASPTNKGVHIHQAGGSPPASSTSSSSLTNDVAKQPVSRDLPSGRPGTTGPAGAQY 916
Query: 936 RPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLT 985
PH P+ D +G S +S + +WS +F++P++
Sbjct: 917 TPHSHQFPRTRKMFDKGPEQTADDADDAAGHKSFISATV---QTGFCDWSARYFAQPVMK 973
Query: 986 AADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRF----EKGTKTAL-LQ 1040
++ + R+ERE L + ++ +R + + I D + G + +
Sbjct: 974 IPEEHDLESQIRKEREWRFLRN-SRVRRQAQQVIQKGITRLDDQIFLNRNPGVPSVVKFH 1032
Query: 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100
PF+P + AD++ I W++E+ L+ F N + ++ + +N D SLLL A+ +G
Sbjct: 1033 PFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLNGQDCSLLLTATDDG 1091
Query: 1101 NIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1159
IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G L +SG+V + +WD
Sbjct: 1092 AIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGLLMSSGDVRIVRIWD 1151
Query: 1160 LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1219
++E + V IP+ +D +++L+ H + AG DGS+R+YD R + C +
Sbjct: 1152 TDREMK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDRRMA-LSECRVMTYR 1208
Query: 1220 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1279
+ VV S Q D IVS S GD++ D R ++ + +G L+AL +H A
Sbjct: 1209 EHTAWVVKASLQKRPD-GHIVSVSVNGDVRIFDPR-MPESVNVLQIVKG-LTALDIHPQA 1265
Query: 1280 PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339
+IA GS Q +++ GE + I+Y+ FM Q++G+++CL FHP+ LA GS D
Sbjct: 1266 DLIACGSVNQFTAIYNSSGELINNIKYYD-GFMGQRVGAISCLAFHPHWPHLAVGSNDYY 1324
Query: 1340 VSIHS 1344
+S++S
Sbjct: 1325 ISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Homo sapiens (taxid: 9606) |
| >sp|Q8K4Q0|RPTOR_MOUSE Regulatory-associated protein of mTOR OS=Mus musculus GN=Rptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/1341 (41%), Positives = 762/1341 (56%), Gaps = 144/1341 (10%)
Query: 92 LVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGK 151
L WR KDRMKT VALVLCLN+ VDPPDV+K +PCAR+ECWIDP SM PQKALETIG
Sbjct: 45 LAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGA 104
Query: 152 NLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEI 211
NL +QYE WQPRARYK LDPTVDEVKKLC + RR AK ERVLFHYNGHGVP+PT NGE+
Sbjct: 105 NLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEV 164
Query: 212 WLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL--------------- 252
W+FNK YIPL I DL +W+ +PSI+V+DCS AG+IV +F +
Sbjct: 165 WVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINP 224
Query: 253 -HDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL- 310
H S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC +
Sbjct: 225 NHPLAQMPLPPSMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCV 284
Query: 311 -LHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVA 369
L + LI+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVA
Sbjct: 285 SLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVA 344
Query: 370 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEY 429
SLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A +
Sbjct: 345 SLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-F 403
Query: 430 QPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWA 489
+ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWA
Sbjct: 404 RHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWA 463
Query: 490 VDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 549
V LALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L
Sbjct: 464 VSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLA 523
Query: 550 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 609
E R M AF+LAVIV+ + GQEAC++ LI +CL+ L + PL QW
Sbjct: 524 DPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL-------SDPHPLLRQW 576
Query: 610 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRD 669
+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 577 VAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVG-------- 628
Query: 670 GVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAA 729
E D I ++++ L +++DGSP+VR E+ VAL+ ++ + ++A
Sbjct: 629 --NSAERTDHSTTIDHNVAMM--LAQLINDGSPMVRKELVVALSHLVVQYESNFCTVALQ 684
Query: 730 YSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLT-RVGNEAVVRDGRVSTSSPLANAG 788
+ + + N LPS A T GS+ + P T R+ + + + R T++ N
Sbjct: 685 FMEEEKNY---PLPSPA---ATEGGSLTPVRDSPCTPRLRSVSSYGNIRAVTTARNLNKS 738
Query: 789 LMHGSPLSDDSSQHSDSGILNDG------------------VSNGVVNHMRPKPLDSA-- 828
L + S L+++S N +S ++ MR SA
Sbjct: 739 LQNLS-LTEESGSSVAFSPGNLSTSSSASSTLGSPENEEYILSFETIDKMRRVSSYSALN 797
Query: 829 ---------IYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPG 879
+Y+Q + LA DP P ++ L +VL+ I + V + +TS
Sbjct: 798 SLIGVSFNSVYTQIWRVLLHLAADPYPDVSDLAMKVLNSIAYKATVNARPQRILDTSSLT 857
Query: 880 DPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL--------------- 924
A+PT G H+ +PP S L
Sbjct: 858 QSAPASPT--------------NKGMHMHQVGGSPPASSTSSCSLTNDVAKQTVSRDLPS 903
Query: 925 --PGMRRVCSLEFRPH----------LINSPDSGLADPLLGSGDPSAVSERSLLPPSTIY 972
PG ++ PH PD D +G S + +
Sbjct: 904 SRPGTAGPTGAQYTPHSHQFPRTRKMFDKGPDQTTDDADDAAGHKSFICASM---QTGFC 960
Query: 973 NWSCGHFSKPLLTAADDTEEILARREERE-KFALEHIAKCQ-----RSSVSKLNNPIACW 1026
+WS +F++ ++ ++ + R+ERE +F + Q + +++L++ I +
Sbjct: 961 DWSARYFAQAVMKIPEEHDLESQIRKEREWRFLRNTRVRKQAQQVIQKGITRLDDQI--F 1018
Query: 1027 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN 1086
R PF+P + AD++ I W++E+ L+ F N + ++ + +N
Sbjct: 1019 LNRNPGVPSVVKFHPFTPCIAVADKDS-ICFWDWEKGEKLDYFHNGNPRYTRVTAMEYLN 1077
Query: 1087 ELDVSLLLVASCNGNIRIWKDY-DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1145
D SLLL A+ +G IR+WK++ D + ++VTA+ + P R + +VVDW+Q++G
Sbjct: 1078 GQDCSLLLTATDDGAIRVWKNFADLEKNPEMVTAWQGLSDMLPTTRGAGMVVDWEQETGL 1137
Query: 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1205
L +SG+V + +WD ++E + V IP+ +D +++L+ H + AG DGS+R+YD
Sbjct: 1138 LMSSGDVRIVRIWDTDRETK-VQDIPTGADSCVTSLSCDS-HRSLIVAGLGDGSIRVYDR 1195
Query: 1206 RTP--DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263
R + V + R HT V + G IVS S GD++F D R ++ +
Sbjct: 1196 RMALSECRVMTYREHTAWVVKAYLQKHPEG----HIVSVSVNGDVRFFDPR-MPESVNVM 1250
Query: 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1323
+G L+AL +H A +IA GS Q +++ GE + I+Y+ FM Q++G+++CL
Sbjct: 1251 QIVKG-LTALDIHPQANLIACGSMNQFTAIYNGNGELINNIKYYD-GFMGQRVGAISCLA 1308
Query: 1324 FHPYQVLLAAGSADACVSIHS 1344
FHP+ LA GS D +S++S
Sbjct: 1309 FHPHWPHLAVGSNDYYISVYS 1329
|
Involved in the control of the mammalian target of rapamycin complex 1 (mTORC1) activity which regulates cell growth and survival, and autophagy in response to nutrient and hormonal signals; functions as a scaffold for recruiting mTORC1 substrates. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Mus musculus (taxid: 10090) |
| >sp|P87141|MIP1_SCHPO WD repeat-containing protein mip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mip1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/767 (47%), Positives = 470/767 (61%), Gaps = 82/767 (10%)
Query: 21 LNDDCGSAHGDVDLRRD------SDTASSSYTNNASVTTITTTTTTS------------- 61
+ND G RR ++T S YT N+++ T T S
Sbjct: 1 MNDRISEVSGSSRARRSVLSYGTTETGSDRYTENSNIATENGVDTASSMIDGIQSGFPQP 60
Query: 62 -------------LAYLPQTVVL--CELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGC 106
+ L Q + + RH + + P+++ + WR ++R+KT
Sbjct: 61 RHGFEEEYNNAEYINMLEQVFYMYYTDKRHRGVISKKNAEPTET--IHDWRMRERLKTVS 118
Query: 107 VALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARY 166
AL++CLNI VDPPDVIK +P A+ ECWIDPFS+ KALE IGKNL QQYE R RY
Sbjct: 119 AALLVCLNIGVDPPDVIKPNPAAKYECWIDPFSLPASKALEAIGKNLQQQYETLSMRTRY 178
Query: 167 KVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPI 222
+ LDP ++EVKKLC RR AK ER+LFHYNGHGVP PTA+GEIW+FNK YIP+ +
Sbjct: 179 RHYLDPAIEEVKKLCIGQRRNAKEERILFHYNGHGVPMPTASGEIWVFNKNYTQYIPVSL 238
Query: 223 SDLDSWLKTPSIYVFDCSAAGMIV---NAFIELHDWGASNYSG---------STRDCILL 270
DL SWL P IYV+DCSAAG I+ N F E D A + S CI L
Sbjct: 239 YDLQSWLGAPCIYVYDCSAAGNIIVNFNRFAEQRDKEALRIAKQNPNVLAMPSHTSCIQL 298
Query: 271 AACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDR 330
AAC ETLP + + PAD+FTSCLT+PI +++RW+ ++ L+ +++ KIPGR DR
Sbjct: 299 AACGPKETLPMNPDLPADLFTSCLTSPIEISVRWYVLQNPFPNKLNLNMLLKIPGRLQDR 358
Query: 331 RTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPI 390
RT LGELNWIFTA+TDTIAWNV P LF+RLFRQDL+VA+LFRNFLLAERIM +C P
Sbjct: 359 RTPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQ 418
Query: 391 SHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA----EYQPSPFFSEQLTAFEVWL 446
S P LPPTH H MW++WD+A + CLSQLP ++ + EY+ S FFSEQLTAFEVWL
Sbjct: 419 SSPELPPTHDHPMWNSWDLAIDNCLSQLPDMLDAESKGIAYEYKHSTFFSEQLTAFEVWL 478
Query: 447 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 506
G +KPP+QLP+VLQVLLSQ HR RAL+LL +FLD+G WAVDLALS+GIFPYVLKLL
Sbjct: 479 SQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSKFLDLGVWAVDLALSIGIFPYVLKLL 538
Query: 507 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD-SMEAYP-----EQRAM 560
Q+ EL+ +LVFIW +ILA+D SCQ DL+KD G+ YF++ L+ + +P E RAM
Sbjct: 539 QSPAIELKPVLVFIWARILAVDDSCQADLLKDNGYGYFVQILNPNSSIFPSSNISEHRAM 598
Query: 561 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620
AF+L+V G +GQ AC+ ++ CL HL + L QW CLC+ +LWE+
Sbjct: 599 CAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP-------DSLLRQWACLCISQLWEN 651
Query: 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 680
++EA+ G R +A ++ + PEVRAS + + T L GF +
Sbjct: 652 YSEAKWSGTRDNAHVKLAEIIVDSVPEVRASVLTAFTTFL--GFPE-----------KTE 698
Query: 681 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIA 727
E + E I + L +SD SPLVR E+ + L+ F +K+ L +A
Sbjct: 699 EVVAVETYIAIAALAALSDASPLVRHELVIFLSHFVVNYKKQLMVVA 745
|
Binds to and facilitates the functioning of the meiotic regulator mei2. May also be involved in conjugation by interacting with ste11. Essential for cell growth. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q55BR7|RPTOR_DICDI Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 271/470 (57%), Positives = 345/470 (73%), Gaps = 21/470 (4%)
Query: 265 RDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIP 324
RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L + ++DKIP
Sbjct: 359 RDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGITADMLDKIP 417
Query: 325 GRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRS 384
G + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+LLAERIMRS
Sbjct: 418 GNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNYLLAERIMRS 477
Query: 385 ANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEV 444
ANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF+EQLTAFEV
Sbjct: 478 ANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFFTEQLTAFEV 537
Query: 445 WLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLK 504
WL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL VGIFPYVLK
Sbjct: 538 WLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALCVGIFPYVLK 597
Query: 505 LLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFV 564
LLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S + +QR M+AFV
Sbjct: 598 LLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPADQRTMSAFV 657
Query: 565 LAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 624
L+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+ K+WE+F EA
Sbjct: 658 LSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMAKMWENFEEA 710
Query: 625 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIR 684
+ + +A LL++ PEVRASAV +LG L+ G EG E ++
Sbjct: 711 KWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI--------GGAEGSE-----QRTN 757
Query: 685 AEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQ 734
E+++ +L + +D SP+VR E+ ++L+R ++ + +A ++ +
Sbjct: 758 IELNLALTLAVITADCSPMVRKELVISLSRIVSSYESNFVQVAQEIAQEE 807
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P38873|KOG1_YEAST Target of rapamycin complex 1 subunit KOG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KOG1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/367 (46%), Positives = 232/367 (63%), Gaps = 41/367 (11%)
Query: 93 VSKWR-PKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMA-PQKALETIG 150
++ W+ KDR KT AL+LCLN+ VDPPDV+K PCAR+E W+DP + +KA+E IG
Sbjct: 70 ITDWKIMKDRQKTVSAALLLCLNLGVDPPDVMKTHPCARVEAWVDPLNFQDSKKAIEQIG 129
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
KNL QYE R RYK LDP V++VK+ CN+ RR +K +R+LFHYNGHGVPKPT +GE
Sbjct: 130 KNLQAQYETLSLRTRYKQSLDPCVEDVKRFCNSLRRTSKEDRILFHYNGHGVPKPTKSGE 189
Query: 211 IWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIEL------------HD 254
IW+FN+ YIP+ + DL +WL P I+V+DC++A I+ F + HD
Sbjct: 190 IWVFNRGYTQYIPVSLYDLQTWLGAPCIFVYDCNSAENILINFQKFVQKRIKDDEEGNHD 249
Query: 255 WGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHES 314
A + + + +DC LA+C + E L S E PAD+F+ CLT PI +++R F +S L +S
Sbjct: 250 VAAPSPTSAYQDCFQLASCTSDELLLMSPELPADLFSCCLTCPIEISIRIFLMQSPLKDS 309
Query: 315 LDYSLID----------------------KIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
+ IPG +DRRT LGELNWIFTA+TDTIAW
Sbjct: 310 KYKIFFENSTSNQPFGDSKNSFKSKIPNVNIPGMLSDRRTPLGELNWIFTAITDTIAWTS 369
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPT-HQHHMWDAWDMAA 411
LP LF++LFR DL++A+LFRNFLLA+RIM NC P+S P LP + H MW +WD+A
Sbjct: 370 LPRPLFKKLFRHDLMIAALFRNFLLAKRIMPWYNCHPVSDPELPDSITTHPMWKSWDLAM 429
Query: 412 EICLSQL 418
+ L+++
Sbjct: 430 DEVLTKI 436
|
Component of TORC1, which regulates multiple cellular processes to control cell growth in response to environmental signals. Nutrient limitation and environmental stress signals cause inactivation of TORC1. Active TORC1 positively controls ribosome biogenesis via control of rRNA, ribosomal protein and tRNA gene expression, and rRNA processing. TORC1 positively controls protein biosynthesis by regulation of mRNA stability, translation initiation factor activity, and high-affinity amino acid permeases that serve to provide amino acids for use by the translation machinery. TORC1 also promotes growth by sequestering a number of nutrient and general stress-responsive transcription factors in the cytoplasm. TORC1 negatively controls macroautophagy, a process to recycle surplus cytoplasmic mass under nutrient starvation conditions. KOG1 may have a role in binding and recruiting substrates of TORC1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
Query: 97 RPKDR-MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155
+PK+ MKTGCVALVLCLNISVDPPDVIKISPC R ECWIDPFSMA KALETIGK L
Sbjct: 356 QPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHS 415
Query: 156 QYERWQPRARYKVQLDPTVDEV 177
QYERWQP+ARYK+QLDPT++EV
Sbjct: 416 QYERWQPKARYKLQLDPTLEEV 437
|
Binds double-stranded RNA. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1344 | ||||||
| 359481183 | 1363 | PREDICTED: regulatory-associated protein | 0.989 | 0.975 | 0.837 | 0.0 | |
| 224140567 | 1366 | predicted protein [Populus trichocarpa] | 0.991 | 0.975 | 0.814 | 0.0 | |
| 359481185 | 1370 | PREDICTED: regulatory-associated protein | 0.988 | 0.970 | 0.825 | 0.0 | |
| 224091088 | 1377 | predicted protein [Populus trichocarpa] | 0.992 | 0.968 | 0.821 | 0.0 | |
| 449464424 | 1362 | PREDICTED: regulatory-associated protein | 0.988 | 0.975 | 0.828 | 0.0 | |
| 356530199 | 1373 | PREDICTED: regulatory-associated protein | 0.981 | 0.960 | 0.806 | 0.0 | |
| 356566757 | 1365 | PREDICTED: regulatory-associated protein | 0.981 | 0.966 | 0.804 | 0.0 | |
| 357506523 | 1430 | Regulatory-associated protein of mTOR [M | 0.982 | 0.923 | 0.749 | 0.0 | |
| 18398267 | 1344 | regulatory associated protein of mTOR [A | 0.986 | 0.986 | 0.787 | 0.0 | |
| 297833636 | 1344 | RAPTOR1B [Arabidopsis lyrata subsp. lyra | 0.985 | 0.985 | 0.788 | 0.0 |
| >gi|359481183|ref|XP_003632587.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 1 [Vitis vinifera] gi|297735579|emb|CBI18073.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2270 bits (5882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1147/1370 (83%), Positives = 1224/1370 (89%), Gaps = 40/1370 (2%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLK 230
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNK YIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 231 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 290
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 291 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 350
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 411 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 531 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 590
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 591 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVP---LLSEPQPE 647
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APAIY P LLSEPQPE
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAIYAPLLSLLSEPQPE 650
Query: 648 VRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAE 707
VRASAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAE
Sbjct: 651 VRASAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAE 710
Query: 708 VAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSI 756
VAVAL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSI
Sbjct: 711 VAVALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSI 769
Query: 757 VSSQIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSN 814
V +GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSN
Sbjct: 770 VPP-VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSN 828
Query: 815 GVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGN 874
G+VNH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G
Sbjct: 829 GIVNHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGT 888
Query: 875 TSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLE 934
+ RP +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLE
Sbjct: 889 SVRPAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLE 948
Query: 935 FRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEIL 994
FRPH +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEIL
Sbjct: 949 FRPHQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEIL 1008
Query: 995 ARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1054
ARREEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENER
Sbjct: 1009 ARREEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENER 1068
Query: 1055 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114
I+IWNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASC+GN+RIWKDY + +Q
Sbjct: 1069 IRIWNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCDGNVRIWKDYTLRGQQ 1128
Query: 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1174
KLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+V IPS S
Sbjct: 1129 KLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QLVYSIPSLS 1187
Query: 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234
D SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVVGI FQPGL
Sbjct: 1188 DSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVVGIGFQPGL 1247
Query: 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1294
DPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP+IASGSAKQ+IKVF
Sbjct: 1248 DPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAPLIASGSAKQIIKVF 1307
Query: 1295 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA VSI++
Sbjct: 1308 NLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALVSIYA 1356
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140567|ref|XP_002323654.1| predicted protein [Populus trichocarpa] gi|222868284|gb|EEF05415.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2242 bits (5810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1117/1371 (81%), Positives = 1205/1371 (87%), Gaps = 39/1371 (2%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGDVDLRRDSDTASSS-YTNNASVTTITT 56
MALGDL ASR S A++SNH + D RDSD AS+S Y + T T
Sbjct: 1 MALGDLTASRLSSQSSVALISNH--------YDDFPSNRDSDIASTSNYGGGNATTGSTA 52
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
TTTS+AYLPQ+ VL ELRHEAFEAS P+GPSDSG VSKWRPKDRMKTG VALVLCLNIS
Sbjct: 53 ATTTSMAYLPQSAVLSELRHEAFEASVPTGPSDSGPVSKWRPKDRMKTGYVALVLCLNIS 112
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCARMECWIDPFSMAPQKALETIGK+LS QYERWQP+ARYK+QLDPTVDE
Sbjct: 113 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSLSIQYERWQPKARYKIQLDPTVDE 172
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTP 232
VKKLCNTCR++AK ERVLFHYNGHGVPKPTANGEIWLFNK YIPLPISDLDSWL+TP
Sbjct: 173 VKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLRTP 232
Query: 233 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 292
SIYVFDCSAAGMIVNAF+ELHDW AS +GS +CILLAACEAHETLPQS+EFPADVFTS
Sbjct: 233 SIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCILLAACEAHETLPQSDEFPADVFTS 292
Query: 293 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
CLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 293 CLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 352
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
LP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 353 LPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
Query: 413 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 472
ICLSQLPS+V DPN+E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ HR
Sbjct: 413 ICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQSHR 472
Query: 473 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ
Sbjct: 473 FRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
Query: 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 592
VDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL+HL
Sbjct: 533 VDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLRHL 592
Query: 593 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 652
+GS+P DAQTEPLFLQWLCLCLGKLWEDFTEAQ +G +ADAPAIY PLL PQPEVRASA
Sbjct: 593 RGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGLQADAPAIYAPLLLVPQPEVRASA 652
Query: 653 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 712
F+L TLLD+G D CRDGV GD+ECDDDEK+RAE+SIIRSLL+VVSDGSPLVRAEVAVAL
Sbjct: 653 AFALATLLDVGGDVCRDGVHGDDECDDDEKVRAEVSIIRSLLSVVSDGSPLVRAEVAVAL 712
Query: 713 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG-----------SIVSSQI 761
ARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSL HIK TGSG SIVSSQI
Sbjct: 713 ARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIKATGSGYINPNQHVPHASIVSSQI 772
Query: 762 GPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNH 819
GPLTRVG N +VVRDGRVSTSSPL AG+MHGSPLSDDSSQHS+SGILN VSNG VNH
Sbjct: 773 GPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLSDDSSQHSNSGILNGIVSNGAVNH 832
Query: 820 MRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTS--R 877
RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGR VLSIIGIEQVVTK V S G++ R
Sbjct: 833 SRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVLSIIGIEQVVTKSVNSAGSSGRPR 892
Query: 878 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 937
PGDP T++P PS+AG+ RSSSWFDMN GHLP FRTPPVSPPR S+L GMRRVCSL+FRP
Sbjct: 893 PGDPKTSSPYPSVAGMTRSSSWFDMNAGHLP--FRTPPVSPPRPSYLTGMRRVCSLDFRP 950
Query: 938 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 997
HL+N PDSGLADPLLGS S +ERSLLP STIY WSCGHFSKPLLT DDTEEIL RR
Sbjct: 951 HLMNFPDSGLADPLLGSVSSSGGTERSLLPQSTIYKWSCGHFSKPLLTVPDDTEEILVRR 1010
Query: 998 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERI-- 1055
EEREK+ALEHIA CQ SS S L N IA DT+FE GTKTALLQPFSPIVVAADENERI
Sbjct: 1011 EEREKYALEHIATCQHSSGSNLKNRIANLDTKFETGTKTALLQPFSPIVVAADENERIRQ 1070
Query: 1056 --KIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113
++WNYEE LLN FDNHDFPDKGISKLCLVNELD SLLLVASC+GNIRIWKDY K
Sbjct: 1071 ASRVWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKDYTVYGK 1130
Query: 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1173
QKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+++ IPSS
Sbjct: 1131 QKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLIHSIPSS 1189
Query: 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1233
SDCS+SA++AS+VHGGQ AAGFVDGSV+LYDVR +MLVC++RPHT+ V RVVGI FQPG
Sbjct: 1190 SDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRPHTENVVRVVGIGFQPG 1249
Query: 1234 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1293
LDP KIVSASQAGD+QFLD+RN + YLTI AHRGSL+AL+VHRHAPIIASGSAKQ+IK+
Sbjct: 1250 LDPGKIVSASQAGDMQFLDMRNLMNPYLTIKAHRGSLTALSVHRHAPIIASGSAKQIIKL 1309
Query: 1294 FSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
FSL GEQL +I YH + M QKI V+CLTFHPYQVLLAAG+ DA SI++
Sbjct: 1310 FSLNGEQLDSITYHL-TIMGQKISPVSCLTFHPYQVLLAAGATDALFSIYA 1359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481185|ref|XP_003632588.1| PREDICTED: regulatory-associated protein of TOR 1-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2239 bits (5802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1137/1378 (82%), Positives = 1217/1378 (88%), Gaps = 49/1378 (3%)
Query: 1 MALGDLMASRFSQSAV-VSNHLNDDCGSAHGDVDLR-----RDSDTASSSYTNNASVTTI 54
MALGDLMASRFSQS+V VSNHL D+C S+H D DL RDSD ASSSYTN
Sbjct: 1 MALGDLMASRFSQSSVAVSNHL-DEC-SSHEDGDLNSNRRDRDSDAASSSYTN------- 51
Query: 55 TTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 114
T TTS+AY PQ +VLCELRHEAFEA PSGPSDSGLVSKWRPKDRMKTGCVALVLCLN
Sbjct: 52 -ATATTSMAYFPQNIVLCELRHEAFEACAPSGPSDSGLVSKWRPKDRMKTGCVALVLCLN 110
Query: 115 ISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTV 174
ISVDPPDVIKISPCARMECWIDPFSMAPQ+ALE IGKNLS QYERWQP+AR K QLDPTV
Sbjct: 111 ISVDPPDVIKISPCARMECWIDPFSMAPQRALEMIGKNLSAQYERWQPKARCKYQLDPTV 170
Query: 175 DEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLK 230
+EVKKLCN+CR+YAK ERVLFHYNGHGVPKPTANGEIWLFNK YIPLPISDLDSWLK
Sbjct: 171 EEVKKLCNSCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLK 230
Query: 231 TPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVF 290
TPSIYVFDCSAAGMIVNAFIELHDW AS SGS RDCILLAACEAHETLPQS EFPADVF
Sbjct: 231 TPSIYVFDCSAAGMIVNAFIELHDWNASVSSGSARDCILLAACEAHETLPQSAEFPADVF 290
Query: 291 TSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAW 350
TSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGRQ DR+TLLGELNWIFTAVTDTIAW
Sbjct: 291 TSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAW 350
Query: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA
Sbjct: 351 NVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMA 410
Query: 411 AEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
AEICLSQL SLV DPNAE+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC
Sbjct: 411 AEICLSQLKSLVDDPNAEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQC 470
Query: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
Query: 531 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 590
CQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGH+RGQEACI AGLI VCLK
Sbjct: 531 CQVDLVKDGGHIYFIRFLDSVEAYPEQRAMAAFVLAVIVDGHKRGQEACIRAGLIDVCLK 590
Query: 591 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 650
HLQGS+PND QTEPLFLQWLCLCLGKLWEDFT+ Q IG +A APA ++ + +VRA
Sbjct: 591 HLQGSIPNDGQTEPLFLQWLCLCLGKLWEDFTDTQIIGLQAGAPAFFIS-NNAILFQVRA 649
Query: 651 SAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAV 710
SAVF+LGTLLD+GFDS R+G ++ DDDEKI+AEIS+I+SLL VVSDGSPLVRAEVAV
Sbjct: 650 SAVFALGTLLDVGFDSTREGTGDEDCDDDDEKIKAEISVIKSLLNVVSDGSPLVRAEVAV 709
Query: 711 ALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVSS 759
AL RFAFGH +HLKSIAAAY KPQSN LL SLPSLAH K T + GSIV
Sbjct: 710 ALGRFAFGHNKHLKSIAAAYWKPQSN-LLNSLPSLAHAKGTTNVYTNPNQYMPYGSIVPP 768
Query: 760 QIGPLTRVGNE-AVVRDGRVST-SSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVV 817
+GPL RVGN+ +V RDGRVST SSPLAN G+MHGSPLSDDSSQ SDSGILNDGVSNG+V
Sbjct: 769 -VGPLLRVGNDNSVTRDGRVSTSSSPLANTGIMHGSPLSDDSSQLSDSGILNDGVSNGIV 827
Query: 818 NHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSR 877
NH RPKPLD+AIYSQCVLAM LAKDPSPRIA+LGRRVLSIIGIEQVV KPV S G + R
Sbjct: 828 NHSRPKPLDNAIYSQCVLAMRALAKDPSPRIASLGRRVLSIIGIEQVVNKPVKSAGTSVR 887
Query: 878 PGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRP 937
P +PT +PTPSL GL RS+SWFDMNGG+LP+ FRTPPVSPPR S+L GMRRV SLEFRP
Sbjct: 888 PAEPTLLSPTPSLIGLARSTSWFDMNGGNLPMTFRTPPVSPPRPSYLTGMRRVYSLEFRP 947
Query: 938 HLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARR 997
H +NSPD+GLADPLLGS S VSERS LP S IYNWSCGHFSKPLL+AADD EEILARR
Sbjct: 948 HQLNSPDTGLADPLLGSAGSSGVSERSFLPQSIIYNWSCGHFSKPLLSAADDNEEILARR 1007
Query: 998 EEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKI 1057
EEREKFAL+HI+KCQ SSVSKLNN IA WDTRFE G KTALLQPFSPIVVAADENERI+I
Sbjct: 1008 EEREKFALDHISKCQHSSVSKLNNQIASWDTRFEAGAKTALLQPFSPIVVAADENERIRI 1067
Query: 1058 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----------GNIRIWK 1106
WNY+E TLLNSFDNH+FPDKGISKLCLVNELD SLLLVASCN GN+RIWK
Sbjct: 1068 WNYDEATLLNSFDNHNFPDKGISKLCLVNELDDSLLLVASCNFFLLSLHYVGDGNVRIWK 1127
Query: 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1166
DY + +QKLVTAFSSIQGH+PGVR N VVDWQQQSGYLYA+GE+SSIM WDL+KE Q+
Sbjct: 1128 DYTLRGQQKLVTAFSSIQGHRPGVRSVNAVVDWQQQSGYLYAAGEISSIMAWDLDKE-QL 1186
Query: 1167 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1226
V IPS SD SISAL+ASQVHGGQLAAGFVDGSV+L+DVRTP+MLVC+ RPHTQ+VERVV
Sbjct: 1187 VYSIPSLSDSSISALSASQVHGGQLAAGFVDGSVKLFDVRTPEMLVCAARPHTQRVERVV 1246
Query: 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1286
GI FQPGLDPAKIVSASQAGDIQFLD+RN AYLTIDAHRGSL+ALA+HRHAP+IASGS
Sbjct: 1247 GIGFQPGLDPAKIVSASQAGDIQFLDVRNGNCAYLTIDAHRGSLTALAIHRHAPLIASGS 1306
Query: 1287 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
AKQ+IKVF+LEG QLGTIR+ +P+FMAQKIGSVNCLTFHPYQVLLAAG+ADA VSI++
Sbjct: 1307 AKQIIKVFNLEGSQLGTIRF-YPTFMAQKIGSVNCLTFHPYQVLLAAGAADALVSIYA 1363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091088|ref|XP_002309174.1| predicted protein [Populus trichocarpa] gi|222855150|gb|EEE92697.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2238 bits (5799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1133/1380 (82%), Positives = 1217/1380 (88%), Gaps = 46/1380 (3%)
Query: 1 MALGDLMASRFSQS---AVVSNHLNDDCGSAHGD--VDL--------------RRDSDTA 41
MALGDLMASRFS A VSNH D S+H D +D+ R +
Sbjct: 1 MALGDLMASRFSSQSPVAFVSNHY-DHYPSSHEDDAIDVARRDDNNNSNNNRDRDSDTAS 59
Query: 42 SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDR 101
+S+Y + + T TTTTS AYLPQTVVLCELRHEAFEAS P+GPSDSGLVSKWRPKDR
Sbjct: 60 TSNYGGGNATASTTATTTTSTAYLPQTVVLCELRHEAFEASVPTGPSDSGLVSKWRPKDR 119
Query: 102 MKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQ 161
MKTG VALVLCLNISVDPPDVIKISPCARMECW DP SMAPQKALETIGKNLS QYERWQ
Sbjct: 120 MKTGYVALVLCLNISVDPPDVIKISPCARMECWTDPLSMAPQKALETIGKNLSIQYERWQ 179
Query: 162 PRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----Y 217
P+ARYKVQLDPTVDEVKKLCNTCR+YAK ERVLFHYNGHGVPKPTANGEIWLFNK Y
Sbjct: 180 PKARYKVQLDPTVDEVKKLCNTCRKYAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQY 239
Query: 218 IPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHE 277
IPLP+SDLDSWL+TPSIYVFDCSAAGMIVNAF+ELHDW AS +GSTRDCILLAACEAHE
Sbjct: 240 IPLPVSDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWNASGSAGSTRDCILLAACEAHE 299
Query: 278 TLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGEL 337
TLPQS+EFPADVFTSCLTTPI MAL+WF +RSLL +SLDYSLIDKIPGRQ DR+TLLGEL
Sbjct: 300 TLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGEL 359
Query: 338 NWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 397
NWIFTAVTDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP
Sbjct: 360 NWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPP 419
Query: 398 THQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPE 457
THQHHMWDAWDMAAEICLSQLPSLV DPNAE+QPSPFF+EQLTAFEVWLDHG EHKKPPE
Sbjct: 420 THQHHMWDAWDMAAEICLSQLPSLVEDPNAEFQPSPFFTEQLTAFEVWLDHGFEHKKPPE 479
Query: 458 QLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQIL 517
QLPIVLQVLLSQCHRFRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTTPELRQIL
Sbjct: 480 QLPIVLQVLLSQCHRFRALVLLGRFLDMGRWAVDLALSVGIFPYVLKLLQTTTPELRQIL 539
Query: 518 VFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 577
VFIWTKILALDKSCQVDLVKDGGH YFIRFLDS+EAYPEQRAMAAFVLAVIVDGHRRGQE
Sbjct: 540 VFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQE 599
Query: 578 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIY 637
ACI+AGLIHVCLKHLQGS+PND QTEPLFLQWLCLCLGKLWEDFTEAQ +G +AD+PAIY
Sbjct: 600 ACIKAGLIHVCLKHLQGSVPNDTQTEPLFLQWLCLCLGKLWEDFTEAQILGLQADSPAIY 659
Query: 638 VPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVV 697
PLL EPQPEVRASA F+L TLLD+G D CRDG GD+E DDDEKIRAEISI+RSLL+ V
Sbjct: 660 APLLLEPQPEVRASAAFALATLLDVGGDVCRDGATGDDEFDDDEKIRAEISIVRSLLSAV 719
Query: 698 SDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSG--- 754
SDGSPLVRAEVAVALARFAFGHKQHLKSIAA+Y KPQSNSLL SLPSLAHIK TGSG
Sbjct: 720 SDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLSSLPSLAHIKATGSGHAN 779
Query: 755 --------SIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSD 804
SIVSSQ GPLTRVG++ +VVRDGR STSSP AG+MHGSPLSDDSS HSD
Sbjct: 780 PNQYVPHASIVSSQFGPLTRVGSDSPSVVRDGRASTSSP-TTAGIMHGSPLSDDSSLHSD 838
Query: 805 SGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQV 864
SGILND VSNG V H RPKPLD+A+YSQCVLAMCTLAKDPSPRIA+LGRRVLSIIGIEQV
Sbjct: 839 SGILNDIVSNGEVLHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRRVLSIIGIEQV 898
Query: 865 VTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFL 924
VTK V S G++ P T+ +PSLAGL RSSSWFDM+ GH+PL FRTPPVSPPR S+L
Sbjct: 899 VTKSVNSTGSSG----PKTS--SPSLAGLARSSSWFDMHAGHIPLTFRTPPVSPPRSSYL 952
Query: 925 PGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLL 984
GMRRVCSLEFRPHL+NSPDSGLADPLL S S +ERSLLP STIYNWSCGHFSKPLL
Sbjct: 953 TGMRRVCSLEFRPHLMNSPDSGLADPLLASVGSSGGTERSLLPQSTIYNWSCGHFSKPLL 1012
Query: 985 TAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQPFSP 1044
T DDTEEIL RREEREKFALEHIA CQ SSVS LNN IA WDT+FE GTKTALLQPFSP
Sbjct: 1013 TTPDDTEEILVRREEREKFALEHIAMCQHSSVSNLNNRIASWDTKFETGTKTALLQPFSP 1072
Query: 1045 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104
IVVAADENERI++WNYEE TLLN FDNHDFPD+G+SKLCLVNELD SLLLVASC+GNIRI
Sbjct: 1073 IVVAADENERIRVWNYEEATLLNGFDNHDFPDRGVSKLCLVNELDDSLLLVASCDGNIRI 1132
Query: 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1164
WKDY K KQKLVTAFSSIQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE
Sbjct: 1133 WKDYTVKGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIMLWDLDKE- 1191
Query: 1165 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224
Q+++ IPSSSDCS+SA++ASQVHGGQ AGFVDGSV+LYDVRTP+MLVC+TRPHT+ VE+
Sbjct: 1192 QLIHSIPSSSDCSVSAMSASQVHGGQFTAGFVDGSVKLYDVRTPEMLVCATRPHTENVEK 1251
Query: 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284
VVGI F PGLDP KIVSASQAGD++FLD+RN++D YLTI AHRGSL+ALAVHRHAPIIAS
Sbjct: 1252 VVGIGFHPGLDPGKIVSASQAGDMKFLDMRNYRDPYLTIKAHRGSLTALAVHRHAPIIAS 1311
Query: 1285 GSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
GSAKQ+IK+FSL GE LG+IRYH + MAQKIG V+CLTFHPYQVLLAAG+ DA SI++
Sbjct: 1312 GSAKQIIKLFSLNGEPLGSIRYHL-TIMAQKIGPVSCLTFHPYQVLLAAGATDALFSIYA 1370
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464424|ref|XP_004149929.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] gi|449517611|ref|XP_004165839.1| PREDICTED: regulatory-associated protein of TOR 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2231 bits (5781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1135/1370 (82%), Positives = 1215/1370 (88%), Gaps = 41/1370 (2%)
Query: 1 MALGDLMASRFSQS--AVVSNHLNDDCGSAHGDVD-----LRRDSDTASSSYTNNASVTT 53
MALGDLMASR SQS AVVSNHL DDC S++ D D LRRDS+ ASSSY
Sbjct: 1 MALGDLMASRISQSSLAVVSNHL-DDCSSSNHDDDGDLISLRRDSEVASSSYA------N 53
Query: 54 ITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCL 113
TT T++ YLPQT+VLCELRH+AFEA P+GPSD+GLVSKWRPKDRMKTGCVALVLCL
Sbjct: 54 AAVTTATTMVYLPQTIVLCELRHDAFEACLPAGPSDTGLVSKWRPKDRMKTGCVALVLCL 113
Query: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPT 173
NISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYERWQPRARYKVQLDPT
Sbjct: 114 NISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSVQYERWQPRARYKVQLDPT 173
Query: 174 VDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWL 229
V+EVKKLC+TCR+YAK ERVLFHYNGHGVPKPTA+GEIWLFNK YIPLPISDLDSWL
Sbjct: 174 VEEVKKLCSTCRKYAKTERVLFHYNGHGVPKPTASGEIWLFNKSYTQYIPLPISDLDSWL 233
Query: 230 KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADV 289
KTPSIYVFDCSAAGMIVNAF ELHD SGSTRDCILLAACE+HETLPQ EFPADV
Sbjct: 234 KTPSIYVFDCSAAGMIVNAFTELHD-----PSGSTRDCILLAACESHETLPQRAEFPADV 288
Query: 290 FTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIA 349
FTSCLTTPI MALRWFCKRSLL ESLD SLIDKIPGRQTDR+TLLGELNWIFTAVTDTIA
Sbjct: 289 FTSCLTTPIKMALRWFCKRSLLRESLDDSLIDKIPGRQTDRKTLLGELNWIFTAVTDTIA 348
Query: 350 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 409
WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM
Sbjct: 349 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 408
Query: 410 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 469
AAEICLSQLP+LV DPN E+QPSPFF+EQLTAFEVWLDHGSE+KKPPEQLPIVLQVLLSQ
Sbjct: 409 AAEICLSQLPALVEDPNLEFQPSPFFTEQLTAFEVWLDHGSENKKPPEQLPIVLQVLLSQ 468
Query: 470 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 529
HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK
Sbjct: 469 GHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK 528
Query: 530 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCL 589
SCQVDLVKDGGH YFIRFLDS+EA+PEQRAMAAFVLAVIVDGHRRGQEACIEA LIHVCL
Sbjct: 529 SCQVDLVKDGGHTYFIRFLDSLEAFPEQRAMAAFVLAVIVDGHRRGQEACIEANLIHVCL 588
Query: 590 KHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 649
KHLQ S PND QTEPLFLQWLCLCLGKLWED+ +AQ IG +ADAPA++ LL+EPQPEVR
Sbjct: 589 KHLQSSTPNDGQTEPLFLQWLCLCLGKLWEDYIDAQIIGLQADAPAVFSSLLAEPQPEVR 648
Query: 650 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 709
ASA+F+LGTLLD+G DS RDGV D+ DDDEKIRAE SI+ SLL+VVSDGSPLVRAEVA
Sbjct: 649 ASAIFALGTLLDVGNDSSRDGVVDDDC-DDDEKIRAETSIVGSLLSVVSDGSPLVRAEVA 707
Query: 710 VALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS-----------GSIVS 758
VALARFAFGH +HLKSIAAAY KP NSLL SLPSLAHI+++G+ GSIVS
Sbjct: 708 VALARFAFGHNKHLKSIAAAYWKPHCNSLLSSLPSLAHIRSSGNAYTNSNQHMPHGSIVS 767
Query: 759 SQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILN-DGVSNG 815
SQIGPL R GNE +VRDGRVSTSSPLAN G+MHGSPLSDDSSQHSDSG+L+ D VSNG
Sbjct: 768 SQIGPLLRFGNENSTLVRDGRVSTSSPLANTGMMHGSPLSDDSSQHSDSGVLHEDVVSNG 827
Query: 816 VVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNT 875
VNH RPKPL++A+YSQCVL MC LA DPSPRIA+LGRRVLSIIGIEQVVTKPV + +
Sbjct: 828 TVNHSRPKPLNNALYSQCVLTMCALANDPSPRIASLGRRVLSIIGIEQVVTKPVKASSSG 887
Query: 876 SRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEF 935
+P D T ++ PS AGL RSSSWFDMNGGHLPL FRTPPVSPPR S+L GMRRVCSLEF
Sbjct: 888 LKPTDGTASSQPPSFAGLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYLTGMRRVCSLEF 947
Query: 936 RPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILA 995
RP L+NSPDSGLADPL GSG S SERS LP STIYNWSCGHFSKPLLT ADD EEI
Sbjct: 948 RPQLMNSPDSGLADPLWGSGGTSGTSERSFLPQSTIYNWSCGHFSKPLLTVADDGEEIFT 1007
Query: 996 RREEREKFALEHIAKCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENER 1054
RREEREKFALE IAKCQ S VSKL NNPIA WDT+FE GTKT LLQPFSPIVVAADENER
Sbjct: 1008 RREEREKFALERIAKCQHSPVSKLNNNPIASWDTKFEMGTKTLLLQPFSPIVVAADENER 1067
Query: 1055 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114
I++WNYEE LLNSFDNHDFPDKGISKLCLVNELD SLLL ASC+GNIRIWKDY K KQ
Sbjct: 1068 IRVWNYEEPALLNSFDNHDFPDKGISKLCLVNELDDSLLLAASCDGNIRIWKDYTLKGKQ 1127
Query: 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1174
KLVTAFS+IQGHKPGVR N VVDWQQQSGYLYASGE+SSIMLWDL+KE Q+V IPSSS
Sbjct: 1128 KLVTAFSAIQGHKPGVRSINAVVDWQQQSGYLYASGEISSIMLWDLDKE-QLVKSIPSSS 1186
Query: 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234
DCSISAL+ASQVHGGQLAAGF DGSV+LYD R P+MLVC+ RPH Q+VE+VVGI FQPGL
Sbjct: 1187 DCSISALSASQVHGGQLAAGFFDGSVKLYDARIPEMLVCTMRPHVQKVEKVVGIGFQPGL 1246
Query: 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVF 1294
D +KIVSASQAGDIQFLDIRN +D YLTIDAHRGSL+ALAVHRHAPI+ASGSAKQLIKVF
Sbjct: 1247 DSSKIVSASQAGDIQFLDIRNQRDRYLTIDAHRGSLTALAVHRHAPILASGSAKQLIKVF 1306
Query: 1295 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
SL+G+QLGTIRY HP+FM QKIGSV+CLTFHPY+VLLAAG+ADACVSI++
Sbjct: 1307 SLDGDQLGTIRY-HPTFMPQKIGSVSCLTFHPYEVLLAAGAADACVSIYA 1355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530199|ref|XP_003533671.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2206 bits (5716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1122/1391 (80%), Positives = 1208/1391 (86%), Gaps = 72/1391 (5%)
Query: 1 MALGDLMASRFSQSAVV-----SNHLND------------------DCGSAHGDVDL--R 35
MALGDLMASRFSQS V+ NHL+D + S++ D D R
Sbjct: 1 MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHR 60
Query: 36 RDSDTA-----SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDS 90
RDS+ A S +Y NA+ TS+AYLP TVVLCELRH+AFEA+ P+GPSDS
Sbjct: 61 RDSEAAIAIISSGNYAGNAA---------TSMAYLPHTVVLCELRHDAFEAAVPAGPSDS 111
Query: 91 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIG 150
GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IG
Sbjct: 112 GLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIG 171
Query: 151 KNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGE 210
K LS QYERWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGE
Sbjct: 172 KTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGE 231
Query: 211 IWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRD 266
IW+FNK YIPLPI++LDSWLKTPSIYVFDCSAAGMIVN+FIELH+W ASN S S RD
Sbjct: 232 IWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRD 291
Query: 267 CILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGR 326
CILLAACEAHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESLDYSLIDKIPGR
Sbjct: 292 CILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGR 351
Query: 327 QTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 386
DR+TLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN
Sbjct: 352 PNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSAN 411
Query: 387 CSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWL 446
CSP+SHPMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWL
Sbjct: 412 CSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWL 471
Query: 447 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 506
DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL
Sbjct: 472 DHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 531
Query: 507 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLA 566
QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLA
Sbjct: 532 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLA 591
Query: 567 VIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQT 626
VIVDGHRRGQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQT
Sbjct: 592 VIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQT 651
Query: 627 IGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE 686
IG + DA I+ PLLSEPQPEVRASAVF+LGTLLD+GFDSCR V GDEECDDD+K RAE
Sbjct: 652 IGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCR-SVGGDEECDDDDKFRAE 710
Query: 687 ISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLA 746
+SI++S+L V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL
Sbjct: 711 VSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLT 770
Query: 747 HIKTTGS-----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGS 793
+IK + GSIVS QIGP+ RVGN+ VVRDGRVS+SSPLA +G+MHGS
Sbjct: 771 NIKGSVGGYAKQNQHMPHGSIVSPQIGPI-RVGNDNSPVVRDGRVSSSSPLAGSGIMHGS 829
Query: 794 PLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGR 853
PLSDDSS HSDSGILNDG SNGV NH PKP D+A+YSQCVLAMCTLAKDPSPRIA LGR
Sbjct: 830 PLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGR 889
Query: 854 RVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRT 913
RVLSIIGIEQVV KP+ S G + +TA+P L RSSSWFDMNGGHLPL FRT
Sbjct: 890 RVLSIIGIEQVVAKPLKSSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRT 940
Query: 914 PPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYN 973
PPVSPPR S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+
Sbjct: 941 PPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYS 1000
Query: 974 WSCGHFSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKG 1033
WSCGHFSKPLLTAADD+EE+ ARREEREKFALEHIAKCQ S+VS+L NPIA WD KG
Sbjct: 1001 WSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDI---KG 1057
Query: 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1093
T+TALLQPFSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLL
Sbjct: 1058 TQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLL 1117
Query: 1094 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS 1153
L AS +GNIRIWKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+S
Sbjct: 1118 LAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEIS 1177
Query: 1154 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1213
SIMLWD++KE Q+VN SSSDCS+SAL ASQVHGGQ AGF+DGSVRLYDVRTPDMLVC
Sbjct: 1178 SIMLWDVDKE-QLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVC 1236
Query: 1214 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273
RPHTQ+VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHRGSL+AL
Sbjct: 1237 GLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTAL 1296
Query: 1274 AVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA 1333
AVHRHAPIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL FHPYQVLLAA
Sbjct: 1297 AVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLNFHPYQVLLAA 1355
Query: 1334 GSADACVSIHS 1344
G+ADACV I++
Sbjct: 1356 GAADACVCIYA 1366
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566757|ref|XP_003551595.1| PREDICTED: regulatory-associated protein of TOR 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2175 bits (5637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1112/1383 (80%), Positives = 1196/1383 (86%), Gaps = 64/1383 (4%)
Query: 1 MALGDLMASRFSQSAV-----VSNHLNDDCGSA----------HGDVDL--RRDSDTA-- 41
MALGDLMAS SQS V + +HL+D SA + D D RRDS+ A
Sbjct: 1 MALGDLMASHLSQSTVLVVPSIHSHLDDSTTSAAVAAVNNSSSNDDADFAHRRDSEAAIS 60
Query: 42 ---SSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRP 98
S +Y NA+ TS+AYLP TV LCELRH+AFEA+ P+GPSDSGLVSKWRP
Sbjct: 61 SSSSGNYAGNAA---------TSMAYLPHTVFLCELRHDAFEAAVPAGPSDSGLVSKWRP 111
Query: 99 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYE 158
KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALE+IGK LS QYE
Sbjct: 112 KDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYE 171
Query: 159 RWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK-- 216
RWQP+ARYK QLDPTVDEVKKLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNK
Sbjct: 172 RWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSY 231
Query: 217 --YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACE 274
YIPLPIS+LDSWLKTPSIYV DCSAAGMIVN FIELH+W SN S S RDCILLAACE
Sbjct: 232 TQYIPLPISELDSWLKTPSIYVIDCSAAGMIVNFFIELHEWSPSNSSVSQRDCILLAACE 291
Query: 275 AHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLL 334
AHETLPQS EFPADVFTSCLTTPI MALRWFC RSLL ESL SLIDKIPGR DR+TLL
Sbjct: 292 AHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLVNSLIDKIPGRPNDRKTLL 351
Query: 335 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPM 394
GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSP+SHPM
Sbjct: 352 GELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPM 411
Query: 395 LPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKK 454
LPPTHQHHMWDAWDMAAE+CLSQLPSLV DPN+E+Q S FF+EQLTAFEVWLDHGSEHKK
Sbjct: 412 LPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNSEFQRSTFFTEQLTAFEVWLDHGSEHKK 471
Query: 455 PPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 514
PPEQLPIVLQVL SQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR
Sbjct: 472 PPEQLPIVLQVLHSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 531
Query: 515 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR 574
QILVFIWTKILALDKSCQVDLVKDGGH YFI+FLDSMEAYPEQRAMAAFVLAVIVDGHRR
Sbjct: 532 QILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRR 591
Query: 575 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 634
GQEACIEAGLIHVCLKHLQ S PND+QTEPLFLQWLCLCLGKLWEDF+EAQTIG + DA
Sbjct: 592 GQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDAT 651
Query: 635 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 694
I+ PLLSEPQPEVRASAVF+LGT+LD+GFDSCR V GDEECDDD+K RAE+SI++S+L
Sbjct: 652 TIFAPLLSEPQPEVRASAVFALGTILDVGFDSCR-SVGGDEECDDDDKFRAEVSIVKSML 710
Query: 695 TVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGS- 753
V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSLA+IK +
Sbjct: 711 GVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLANIKGSVGG 770
Query: 754 ----------GSIVSSQIGPLTRVGNE--AVVRDGRVSTSSPLANAGLMHGSPLSDDSSQ 801
GSIVS QIGP+ RVGN+ V+RDGRVS+SSPLA +G+MHGSPLSDDSS
Sbjct: 771 YAKQNQHMPYGSIVSPQIGPI-RVGNDNSPVIRDGRVSSSSPLAGSGIMHGSPLSDDSSH 829
Query: 802 HSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSIIGI 861
HSDSGILNDG SNGVVNH PKPLD+A+YSQCVLAMCTLAKDPSPRIA LGRRVLSIIGI
Sbjct: 830 HSDSGILNDGFSNGVVNHTGPKPLDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGI 889
Query: 862 EQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQ 921
EQVV KP+ G + +TA+P L RSSSWFDMNGGHLPL FRTPPVSPPR
Sbjct: 890 EQVVAKPLKFSGVRTA---ESTASP------LARSSSWFDMNGGHLPLTFRTPPVSPPRP 940
Query: 922 SFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGHFSK 981
S++ MRRVCSLEFRPHL++SPDSGLADPLLGSG S S+RS LP STIY+WSCGHFSK
Sbjct: 941 SYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSK 1000
Query: 982 PLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTALLQP 1041
PLLTAADD+EE ARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+TALLQP
Sbjct: 1001 PLLTAADDSEEASARREEREKFALEHIGKCQHSAVSRLINPIAKWDI---KGTQTALLQP 1057
Query: 1042 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101
FSPIV+AADENERI+IWN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS +GN
Sbjct: 1058 FSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASSDGN 1117
Query: 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE 1161
IRIWKDY K KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE+SSIMLWD++
Sbjct: 1118 IRIWKDYTLKGKQKLVTAFSSIHGHKPGVRSLNAVVDWQQQCGYLYASGEISSIMLWDVD 1177
Query: 1162 KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1221
KE Q+VN SSSDCS+S L ASQVHGGQ AAGFVDGSVRLYDVRTPDMLVC RPHTQ+
Sbjct: 1178 KE-QLVNSKSSSSDCSVSVLAASQVHGGQFAAGFVDGSVRLYDVRTPDMLVCGLRPHTQR 1236
Query: 1222 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1281
VE+VVGI FQPGLD KIVSASQAGDIQFLDIRNH AYLTI+AHRGSL+ALAVHRHAPI
Sbjct: 1237 VEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRHAPI 1296
Query: 1282 IASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341
IASGSAKQ IKVFSLEG+QLGTI+Y +P+ MAQKIGSV+CL FHPYQVLLAAG+ADACV
Sbjct: 1297 IASGSAKQFIKVFSLEGDQLGTIKY-YPTLMAQKIGSVSCLNFHPYQVLLAAGAADACVC 1355
Query: 1342 IHS 1344
I++
Sbjct: 1356 IYA 1358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506523|ref|XP_003623550.1| Regulatory-associated protein of mTOR [Medicago truncatula] gi|355498565|gb|AES79768.1| Regulatory-associated protein of mTOR [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2127 bits (5510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1084/1446 (74%), Positives = 1186/1446 (82%), Gaps = 125/1446 (8%)
Query: 1 MALGDLMASRFSQSAV--VSNH----------------------LNDDCGSAHGDVDLRR 36
MALGDLMASRFSQS V V NH LNDD + V RR
Sbjct: 1 MALGDLMASRFSQSTVLIVPNHHRDDSTSTTAFSASASSASAAALNDDGSDFNSSVPNRR 60
Query: 37 DSDTASSSYTNNASVTTITTTTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKW 96
DS+ ++S +S + T++ YLPQT ELRH+AFE P+GPSDSGLVSKW
Sbjct: 61 DSEFGAAS----SSSAGVYGNAATTMVYLPQTSFFNELRHDAFELELPTGPSDSGLVSKW 116
Query: 97 RPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQ 156
RPKDRMKTGCVALVLCLNI+VDPPDVIKISPCARMECWIDPFSMAPQKALE IGK+L+ Q
Sbjct: 117 RPKDRMKTGCVALVLCLNINVDPPDVIKISPCARMECWIDPFSMAPQKALELIGKSLTSQ 176
Query: 157 YERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK 216
YERWQP+ARYK QLDPT+DEVKKLC TCRRYAK ERVLFHYNGHGVPKPT NGE+W+FNK
Sbjct: 177 YERWQPKARYKCQLDPTLDEVKKLCTTCRRYAKSERVLFHYNGHGVPKPTHNGELWVFNK 236
Query: 217 ----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAA 272
YIPLP++DLDSWLKTPSIYVFDCSAAG +VNAFI+LH+W ASN GS RDCI+LAA
Sbjct: 237 SYTQYIPLPLNDLDSWLKTPSIYVFDCSAAGKVVNAFIQLHEWNASNSDGSPRDCIMLAA 296
Query: 273 CEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRT 332
CEAHETLPQS EFPADVFT+CLTTPI MALRWF RSLL +S DY LIDKIPGR DR+T
Sbjct: 297 CEAHETLPQSVEFPADVFTACLTTPIKMALRWFSTRSLLRDSFDYLLIDKIPGRPNDRKT 356
Query: 333 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISH 392
LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANC+P+SH
Sbjct: 357 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCTPVSH 416
Query: 393 PMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEH 452
PMLPPTHQHHMWDAWDMAAE+CLSQLPSLV DPNAE+QPS FF+EQLTAFEVWLDHGSEH
Sbjct: 417 PMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEH 476
Query: 453 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL-------------------- 492
KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDL
Sbjct: 477 KKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLVISITIRQIFVQFLSIFSKT 536
Query: 493 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS---------------------- 530
ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS
Sbjct: 537 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSLLKYMNMLFFPSDLVQDKVRKV 596
Query: 531 -------------------CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDG 571
CQVDLVKDGGH YF++FLDS EAYPEQRAMAAFVLAVIVDG
Sbjct: 597 KDREYKKREINITGQYEVSCQVDLVKDGGHIYFMKFLDSSEAYPEQRAMAAFVLAVIVDG 656
Query: 572 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 631
HRRGQEACIEAGL HVCLKHL+ S PND+QTEPLFLQWLCLCLGKLWE+F E + IG +
Sbjct: 657 HRRGQEACIEAGLSHVCLKHLESSSPNDSQTEPLFLQWLCLCLGKLWEEFPEGKIIGLQG 716
Query: 632 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 691
A +I PLLSEPQPEVRASAVF+LGTL+D+GFDSCR GDEECDDD+K RAE+SI+R
Sbjct: 717 HATSILAPLLSEPQPEVRASAVFALGTLVDVGFDSCRS--VGDEECDDDDKFRAEVSIVR 774
Query: 692 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTT 751
SLL+V SDGSPLVRAEVAVALARFAFGH +HLKSIAAAY KPQ+NSL+ SLPSL +IK T
Sbjct: 775 SLLSVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQTNSLINSLPSLTNIKDT 834
Query: 752 GSG-----------SIVSSQIGPLTRVG--NEAVVRDGRVSTSSPLANAGLMHGSPLSDD 798
G G SIVS QIGPL RVG N V+RDGRVS+SSPLA++G+MHGSPLSD+
Sbjct: 835 GGGYSKQNQHMAHGSIVSPQIGPL-RVGSDNSKVIRDGRVSSSSPLASSGIMHGSPLSDN 893
Query: 799 SSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMCTLAKDPSPRIATLGRRVLSI 858
SS HSDSGILNDG SNGVVN PKPLD+A+YSQCVLAMCTLAKDPSPR+ LGRRVLSI
Sbjct: 894 SSHHSDSGILNDGFSNGVVNSFGPKPLDNALYSQCVLAMCTLAKDPSPRVGNLGRRVLSI 953
Query: 859 IGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNGGHLPLKFRTPPVSP 918
IGIEQVV KP+ +P T++ P A L RSSSWFDMNGGHLPL FRTPPVSP
Sbjct: 954 IGIEQVVAKPL-------KPSGVRTSSVVPVSASLARSSSWFDMNGGHLPLTFRTPPVSP 1006
Query: 919 PRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLPPSTIYNWSCGH 978
PR S++ GMRRVCSLEFRPHL+ SPD+GLADPLLGSG +RSLLP S+IYNWSCGH
Sbjct: 1007 PRPSYIAGMRRVCSLEFRPHLMTSPDTGLADPLLGSG----TFDRSLLPQSSIYNWSCGH 1062
Query: 979 FSKPLLTAADDTEEILARREEREKFALEHIAKCQRSSVSKLNNPIACWDTRFEKGTKTAL 1038
FSK LLTAADD+EE+LARREEREKFALEHI KCQ S+VS+L NPIA WD KGT+T L
Sbjct: 1063 FSKSLLTAADDSEEVLARREEREKFALEHIVKCQHSAVSRLTNPIAKWDI---KGTQTLL 1119
Query: 1039 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1098
LQPFSPIVVAADENERI++WN+EE TLLNSFDNHDFPDKGISKLCLVNELD SLLL AS
Sbjct: 1120 LQPFSPIVVAADENERIRVWNHEEATLLNSFDNHDFPDKGISKLCLVNELDDSLLLAASS 1179
Query: 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1158
+GN+R+WKDY + KQKLVTAFSSI GHKPGVR N VVDWQQQ GYLYASGE S IM+W
Sbjct: 1180 DGNVRVWKDYSLRGKQKLVTAFSSIHGHKPGVRSPNAVVDWQQQCGYLYASGETSLIMMW 1239
Query: 1159 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH 1218
DL+KEQ +VN IPSSS+CS+SAL ASQVHGGQ AAGFVDGSVRLYD RTP+MLVC RPH
Sbjct: 1240 DLDKEQ-LVNTIPSSSECSVSALAASQVHGGQFAAGFVDGSVRLYDARTPEMLVCGLRPH 1298
Query: 1219 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1278
TQ+VE+V+GI FQPGLDP K+VSASQAGDIQFLDIRNH AYLTI+AHRGSL+ALAVHRH
Sbjct: 1299 TQRVEKVMGIGFQPGLDPGKLVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRH 1358
Query: 1279 APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1338
APIIASGSAKQLIKVFSLEG+QLGTIRY +P+ MAQKIGSV+CL+FHPYQ+LLAAG+ADA
Sbjct: 1359 APIIASGSAKQLIKVFSLEGDQLGTIRY-YPTLMAQKIGSVSCLSFHPYQLLLAAGAADA 1417
Query: 1339 CVSIHS 1344
CV I++
Sbjct: 1418 CVCIYA 1423
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18398267|ref|NP_566335.1| regulatory associated protein of mTOR [Arabidopsis thaliana] gi|75331762|sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gi|16648937|gb|AAL24320.1| Unknown protein [Arabidopsis thaliana] gi|31711792|gb|AAP68252.1| At3g08850 [Arabidopsis thaliana] gi|56266687|gb|AAV84960.1| raptor1B [Arabidopsis thaliana] gi|332641166|gb|AEE74687.1| regulatory associated protein of mTOR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2085 bits (5401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1355 (78%), Positives = 1177/1355 (86%), Gaps = 29/1355 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTP 232
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNK YIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 233 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 292
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 293 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 413 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 472
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 473 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 592
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 593 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 652
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 653 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 712
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 713 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 771
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 772 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 830
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 831 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 890
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 891 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 950
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 951 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1010
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1011 CQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1069
CQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1070 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1130 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189
R N VVDWQQQSGYLYASGE S++ LWDLEKE Q+V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKE-QLVRSVPSESECGVTALSASQVHGG 1184
Query: 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1309
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRY-YP 1302
Query: 1310 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833636|ref|XP_002884700.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] gi|297330540|gb|EFH60959.1| RAPTOR1B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2080 bits (5389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1069/1356 (78%), Positives = 1177/1356 (86%), Gaps = 31/1356 (2%)
Query: 1 MALGDLMASRFSQSAV--VSNH-LNDDCGSAHGDVDLRR-DSDTASSSYTNNASVTTITT 56
MALGDLM SRFSQS+V VSNH ++DC S+H D D RR DS+ SSS N TT
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNG--TTEGA 58
Query: 57 TTTTSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
T TS+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 59 ATATSMAYLPQTIVLCELRHDASEASAPLGTSEIALVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTP 232
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNK YIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 233 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 292
SIYVFDCSAA MI+NAF ELHD G+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDMGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 293 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 413 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 472
ICLS LP LV DP E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSHLPQLVLDPTVEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 473 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 592
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 593 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 652
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 653 VFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 712
VF+LGTLLDIGFDS + VE +E DDDEKIRAE +II+SLL VVSDGSPLVRAEVAVAL
Sbjct: 659 VFALGTLLDIGFDSNKSVVE--DEFDDDEKIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 713 ARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 771
ARFAFGHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 772 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 830
V R+ R+S+S L ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRISSSP-LGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 831 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 890
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 891 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 950
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL++SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLSSPDSGLADP 949
Query: 951 LLG-SGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIA 1009
LLG SG SERSLLP STIY+WSCGHFSKPLL AD ++EI A+REE+EKFALEHIA
Sbjct: 950 LLGVSG-----SERSLLPLSTIYSWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIA 1004
Query: 1010 KCQRSSVSKL-NNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS 1068
KCQ SS+SKL NNPIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN
Sbjct: 1005 KCQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNG 1064
Query: 1069 FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1128
FDNHDFPDKGISKLCLVNELD S LLVASC+G++RIWK+Y K KQKLVT FSSIQGHKP
Sbjct: 1065 FDNHDFPDKGISKLCLVNELDDSQLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKP 1124
Query: 1129 GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188
G R N VVDWQQQSGYLYASGEVS++ LWDLEKE Q+V IPS S+C ++AL+ASQVHG
Sbjct: 1125 GARDLNAVVDWQQQSGYLYASGEVSTVTLWDLEKE-QLVRSIPSESECGVTALSASQVHG 1183
Query: 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1248
GQLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDI
Sbjct: 1184 GQLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDI 1242
Query: 1249 QFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHH 1308
QFLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY +
Sbjct: 1243 QFLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGRIRY-Y 1301
Query: 1309 PSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
PSFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1302 PSFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1344 | ||||||
| TAIR|locus:2097633 | 1344 | RAPTOR1 "AT3G08850" [Arabidops | 0.986 | 0.986 | 0.770 | 0.0 | |
| DICTYBASE|DDB_G0270398 | 1509 | raptor "Raptor family protein" | 0.295 | 0.263 | 0.639 | 8.5e-259 | |
| UNIPROTKB|Q8N122 | 1335 | RPTOR "Regulatory-associated p | 0.290 | 0.292 | 0.63 | 2.7e-252 | |
| UNIPROTKB|F1MG06 | 1335 | RPTOR "Uncharacterized protein | 0.290 | 0.292 | 0.63 | 3.9e-251 | |
| UNIPROTKB|E1C1B6 | 1336 | RPTOR "Uncharacterized protein | 0.290 | 0.291 | 0.632 | 5.7e-250 | |
| MGI|MGI:1921620 | 1335 | Rptor "regulatory associated p | 0.290 | 0.292 | 0.632 | 7.3e-250 | |
| RGD|1311784 | 1345 | Rptor "regulatory associated p | 0.287 | 0.287 | 0.607 | 1.4e-244 | |
| POMBASE|SPAC57A7.11 | 1313 | mip1 "WD repeat protein, Rapto | 0.430 | 0.440 | 0.537 | 4.7e-223 | |
| FB|FBgn0029840 | 1624 | raptor "raptor" [Drosophila me | 0.291 | 0.241 | 0.578 | 9.8e-222 | |
| UNIPROTKB|Q2KFQ3 | 1582 | MGCH7_ch7g632 "Putative unchar | 0.430 | 0.365 | 0.5 | 2.8e-198 |
| TAIR|locus:2097633 RAPTOR1 "AT3G08850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5341 (1885.2 bits), Expect = 0., P = 0.
Identities = 1044/1355 (77%), Positives = 1151/1355 (84%)
Query: 1 MALGDLMASRFSQSAV--VSNHLND-DCGSAHGDVDLRR-DSDTASSSYTNNASVXXXXX 56
MALGDLM SRFSQS+V VSNH D DC S+H D D RR DS+ SSS N +
Sbjct: 1 MALGDLMVSRFSQSSVSLVSNHRYDEDCVSSHDDGDSRRKDSEAKSSSSYGNGTTEGAAT 60
Query: 57 XXXXSLAYLPQTVVLCELRHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNIS 116
S+AYLPQT+VLCELRH+A EAS P G S+ LV KWR K+RMKTGCVALVLCLNI+
Sbjct: 61 AT--SMAYLPQTIVLCELRHDASEASAPLGTSEIVLVPKWRLKERMKTGCVALVLCLNIT 118
Query: 117 VDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDE 176
VDPPDVIKISPCAR+E WIDPFSMAP KALETIGKNLS QYERWQPRARYKVQLDPTVDE
Sbjct: 119 VDPPDVIKISPCARIEAWIDPFSMAPPKALETIGKNLSTQYERWQPRARYKVQLDPTVDE 178
Query: 177 VKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTP 232
V+KLC TCR+YAK ERVLFHYNGHGVPKPTANGEIW+FNK YIPLPIS+LDSWLKTP
Sbjct: 179 VRKLCLTCRKYAKTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPISELDSWLKTP 238
Query: 233 SIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTS 292
SIYVFDCSAA MI+NAF ELHDWG+S SGS+RDCILLAAC+ HETLPQS EFPADVFTS
Sbjct: 239 SIYVFDCSAARMILNAFAELHDWGSSGSSGSSRDCILLAACDVHETLPQSVEFPADVFTS 298
Query: 293 CLTTPITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNV 352
CLTTPI MAL+WFC+RSLL E +D SLID+IPGRQ DR+TLLGELNWIFTAVTDTIAWNV
Sbjct: 299 CLTTPIKMALKWFCRRSLLKEIIDESLIDRIPGRQNDRKTLLGELNWIFTAVTDTIAWNV 358
Query: 353 LPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAE 412
LPH+LFQRLFRQDLLVASLFRNFLLAERIMRSANC+PISHPMLPPTHQHHMWDAWDMAAE
Sbjct: 359 LPHELFQRLFRQDLLVASLFRNFLLAERIMRSANCNPISHPMLPPTHQHHMWDAWDMAAE 418
Query: 413 ICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 472
ICLSQLP LV DP+ E+QPSPFF+EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR
Sbjct: 419 ICLSQLPQLVLDPSTEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR 478
Query: 473 FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532
FRALVLLGRFLDMG WAVDLALSVGIFPYVLKLLQTTT ELRQILVFIWTKILALDKSCQ
Sbjct: 479 FRALVLLGRFLDMGSWAVDLALSVGIFPYVLKLLQTTTNELRQILVFIWTKILALDKSCQ 538
Query: 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHL 592
+DLVKDGGH YFIRFLDS A+PEQRAMAAFVLAVIVDGHRRGQEAC+EA LI VCL HL
Sbjct: 539 IDLVKDGGHTYFIRFLDSSGAFPEQRAMAAFVLAVIVDGHRRGQEACLEANLIGVCLGHL 598
Query: 593 QGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASA 652
+ S P+D Q EPLFLQWLCLCLGKLWEDF EAQ +GR A+A PLLSEPQPEVRA+A
Sbjct: 599 EASRPSDPQPEPLFLQWLCLCLGKLWEDFMEAQIMGREANAFEKLAPLLSEPQPEVRAAA 658
Query: 653 VFSLGTLLDIGFDSCRXXXXXXXXXXXXXKIRAEISIIRSLLTVVSDGSPXXXXXXXXXX 712
VF+LGTLLDIGFDS + KIRAE +II+SLL VVSDGSP
Sbjct: 659 VFALGTLLDIGFDSNKSVVEDEFDDDE--KIRAEDAIIKSLLDVVSDGSPLVRAEVAVAL 716
Query: 713 XXXXXGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSIVSSQIGPLTRVGNEA- 771
GHKQHLK AA+Y KPQS+SLL SLPS+A GS +IVS + PLTR ++
Sbjct: 717 ARFAFGHKQHLKLAAASYWKPQSSSLLTSLPSIAKFHDPGSATIVSLHMSPLTRASTDSQ 776
Query: 772 -VVRDGRVSTSSPLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIY 830
V R+ R+S SSPL ++GLM GSPLSDDSS HSDSG+++D VSNG V+ +P+ LD+A+Y
Sbjct: 777 PVARESRIS-SSPLGSSGLMQGSPLSDDSSLHSDSGMMHDSVSNGAVH--QPRLLDNAVY 833
Query: 831 SQCVLAMCTLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSL 890
SQCV AM LAKDPSPRIA+LGRRVLSIIGIEQVV KP G RPG+ T + TP L
Sbjct: 834 SQCVRAMFALAKDPSPRIASLGRRVLSIIGIEQVVAKPSKPTG---RPGEAATTSHTP-L 889
Query: 891 AGLVRSSSWFDMNGGHLPLKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADP 950
AGL RSSSWFDM+ G+LPL FRTPPVSPPR ++L G+RRVCSLEFRPHL+ SPDSGLADP
Sbjct: 890 AGLARSSSWFDMHAGNLPLSFRTPPVSPPRTNYLSGLRRVCSLEFRPHLLGSPDSGLADP 949
Query: 951 LLGSGDPSAVSERSLLPPSTIYNWSCGHFSKPLLTAADDTEEILARREEREKFALEHIAK 1010
LLG+ SERSLLP STIY WSCGHFSKPLL AD ++EI A+REE+EKFALEHIAK
Sbjct: 950 LLGASG----SERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFALEHIAK 1005
Query: 1011 CQRSSVSKLNN-PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF 1069
CQ SS+SKLNN PIA WDTRFE GTKTALL PFSPIVVAADENERI++WNYEE TLLN F
Sbjct: 1006 CQHSSISKLNNNPIANWDTRFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGF 1065
Query: 1070 DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129
DNHDFPDKGISKLCL+NELD SLLLVASC+G++RIWK+Y K KQKLVT FSSIQGHKPG
Sbjct: 1066 DNHDFPDKGISKLCLINELDDSLLLVASCDGSVRIWKNYATKGKQKLVTGFSSIQGHKPG 1125
Query: 1130 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189
R N VVDWQQQSGYLYASGE S++ LWDLEKEQ +V +PS S+C ++AL+ASQVHGG
Sbjct: 1126 ARDLNAVVDWQQQSGYLYASGETSTVTLWDLEKEQ-LVRSVPSESECGVTALSASQVHGG 1184
Query: 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249
QLAAGF DGS+RLYDVR+P+ LVC+TRPH Q+VERVVG+SFQPGLDPAK+VSASQAGDIQ
Sbjct: 1185 QLAAGFADGSLRLYDVRSPEPLVCATRPH-QKVERVVGLSFQPGLDPAKVVSASQAGDIQ 1243
Query: 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1309
FLD+R +D YLTIDAHRGSL+ALAVHRHAPIIASGSAKQLIKVFSL+GEQLG IRY+ P
Sbjct: 1244 FLDLRTTRDTYLTIDAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLQGEQLGIIRYY-P 1302
Query: 1310 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344
SFMAQKIGSV+CLTFHPYQVLLAAG+AD+ VSI++
Sbjct: 1303 SFMAQKIGSVSCLTFHPYQVLLAAGAADSFVSIYT 1337
|
|
| DICTYBASE|DDB_G0270398 raptor "Raptor family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 8.5e-259, Sum P(4) = 8.5e-259
Identities = 259/405 (63%), Positives = 315/405 (77%)
Query: 256 GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLHESL 315
G+S+ S RDCILLAAC A+E LP + +FPAD+FT+CLTTPI +ALRWFC S+L +
Sbjct: 350 GSSSSSSHQRDCILLAACSANEILPMNPDFPADMFTACLTTPIRIALRWFCSHSIL-TGI 408
Query: 316 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 375
++DKIPG + RRT LGELNWIFTAVTDTIAWNVLP LFQ+LFRQDLLVASLFRN+
Sbjct: 409 TADMLDKIPGNLSSRRTPLGELNWIFTAVTDTIAWNVLPRHLFQKLFRQDLLVASLFRNY 468
Query: 376 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 435
LLAERIMRSANC+PIS P LPPT+QH MW AWD+A ++ +SQLP+L+ADPNAE++ SPFF
Sbjct: 469 LLAERIMRSANCTPISCPRLPPTYQHAMWQAWDLAVDLVISQLPTLLADPNAEFKSSPFF 528
Query: 436 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 495
+EQLTAFEVWL+ GSEHK PP QLPIVLQVLLSQ HR RALVLLG+FLD+GPWAV+LAL
Sbjct: 529 TEQLTAFEVWLEFGSEHKDPPAQLPIVLQVLLSQAHRLRALVLLGKFLDLGPWAVNLALC 588
Query: 496 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 555
VGIFPYVLKLLQ+ +LR ILVFIW KILALDKSCQ+DLVK+ GHAYFI L S +
Sbjct: 589 VGIFPYVLKLLQSPAGDLRHILVFIWAKILALDKSCQLDLVKENGHAYFISVLSSPQIPA 648
Query: 556 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 615
+QR M+AFVL+ I + R GQ AC+ L+ +CL L ND +P+ +W+ LC+
Sbjct: 649 DQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQL-----NDP--DPMVRRWMILCMA 701
Query: 616 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
K+WE+F EA+ + +A LL++ PEVRASAV +LG L+
Sbjct: 702 KMWENFEEAKWAAIKENAHEKLCLLLTDVSPEVRASAVVALGELI 746
|
|
| UNIPROTKB|Q8N122 RPTOR "Regulatory-associated protein of mTOR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1293 (460.2 bits), Expect = 2.7e-252, Sum P(3) = 2.7e-252
Identities = 252/400 (63%), Positives = 301/400 (75%)
Query: 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 320
S ++CI LAACEA E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 321 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 380
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 381 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 440
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 441 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 500
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 501 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 560
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 561 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYHTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
|
|
| UNIPROTKB|F1MG06 RPTOR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 3.9e-251, Sum P(3) = 3.9e-251
Identities = 252/400 (63%), Positives = 302/400 (75%)
Query: 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 320
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 321 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 380
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 381 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 440
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 441 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 500
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 501 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 560
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 561 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLCSLLSDPIPEVRCAAVFALGTFV 627
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| UNIPROTKB|E1C1B6 RPTOR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1298 (462.0 bits), Expect = 5.7e-250, Sum P(3) = 5.7e-250
Identities = 253/400 (63%), Positives = 305/400 (76%)
Query: 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFC-KRSL-LHESLDYSLI 320
S ++CI LAACEA+E LP + PAD+FTSCLTTPI +ALRWFC ++S+ L + LI
Sbjct: 236 SMKNCIQLAACEANELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKSVRLVPGVTLDLI 295
Query: 321 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 380
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 381 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 440
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 441 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 500
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 501 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 560
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 561 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620
AF+LAVIV+ + GQEAC++ LI +CL+ L ND PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNNYNTGQEACLQGNLIAICLEQL-----NDPH--PLLRQWVAICLGRIWQN 587
Query: 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
|
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| MGI|MGI:1921620 Rptor "regulatory associated protein of MTOR, complex 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1300 (462.7 bits), Expect = 7.3e-250, Sum P(3) = 7.3e-250
Identities = 253/400 (63%), Positives = 303/400 (75%)
Query: 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSL--LHESLDYSLI 320
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + L + LI
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 321 DKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAER 380
+KIPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLLVASLFRNFLLAER
Sbjct: 296 EKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAER 355
Query: 381 IMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLT 440
IMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A ++ SPFF+EQLT
Sbjct: 356 IMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA-FRHSPFFAEQLT 414
Query: 441 AFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFP 500
AF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GPWAV LALSVGIFP
Sbjct: 415 AFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFP 474
Query: 501 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAM 560
YVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+ L E R M
Sbjct: 475 YVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTM 534
Query: 561 AAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620
AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL QW+ +CLG++W++
Sbjct: 535 TAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLRQWVAICLGRIWQN 587
Query: 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 588 FDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 627
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| RGD|1311784 Rptor "regulatory associated protein of MTOR, complex 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 1.4e-244, Sum P(3) = 1.4e-244
Identities = 251/413 (60%), Positives = 304/413 (73%)
Query: 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKR---SLLHE-SLDYS 318
S ++CI LAACEAHE LP + PAD+FTSCLTTPI +ALRWFC + SL+ +LD
Sbjct: 236 SMKNCIQLAACEAHELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLI 295
Query: 319 -----------LIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLL 367
++ +IPGR DRRT LGELNWIFTA+TDTIAWNVLP DLFQ+LFRQDLL
Sbjct: 296 ENSPGSTNANIILSRIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLL 355
Query: 368 VASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNA 427
VASLFRNFLLAERIMRS NC+P+S P LPPT+ H MW AWD+A +ICLSQLP+++ + A
Sbjct: 356 VASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTA 415
Query: 428 EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGP 487
++ SPFF+EQLTAF+VWL G E++ PPEQLPIVLQVLLSQ HR RAL LLGRFLD+GP
Sbjct: 416 -FRHSPFFAEQLTAFQVWLTMGVENRSPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGP 474
Query: 488 WAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF 547
WA ALSVGIFPYVLKLLQ++ ELR +LVFIW KILA+D SCQ DLVKD GH YF+
Sbjct: 475 WA---ALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSV 531
Query: 548 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 607
L E R M AF+LAVIV+ + GQEAC++ LI +CL+ L S P+ PL
Sbjct: 532 LADPYMPAEHRTMTAFILAVIVNSYTTGQEACLQGNLIAICLEQL--SDPH-----PLLR 584
Query: 608 QWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660
QW+ +CLG++W++F A+ G R A LLS+P PEVR +AVF+LGT +
Sbjct: 585 QWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFV 637
|
|
| POMBASE|SPAC57A7.11 mip1 "WD repeat protein, Raptor homolog Mip1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1638 (581.7 bits), Expect = 4.7e-223, Sum P(4) = 4.7e-223
Identities = 331/616 (53%), Positives = 421/616 (68%)
Query: 75 RHEAFEASTPSGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECW 134
RH + + P+++ + WR ++R+KT AL++CLNI VDPPDVIK +P A+ ECW
Sbjct: 89 RHRGVISKKNAEPTET--IHDWRMRERLKTVSAALLVCLNIGVDPPDVIKPNPAAKYECW 146
Query: 135 IDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVL 194
IDPFS+ KALE IGKNL QQYE R RY+ LDP ++EVKKLC RR AK ER+L
Sbjct: 147 IDPFSLPASKALEAIGKNLQQQYETLSMRTRYRHYLDPAIEEVKKLCIGQRRNAKEERIL 206
Query: 195 FHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIV---N 247
FHYNGHGVP PTA+GEIW+FNK YIP+ + DL SWL P IYV+DCSAAG I+ N
Sbjct: 207 FHYNGHGVPMPTASGEIWVFNKNYTQYIPVSLYDLQSWLGAPCIYVYDCSAAGNIIVNFN 266
Query: 248 AFIELHDWGASNYSG---------STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 298
F E D A + S CI LAAC ETLP + + PAD+FTSCLT+PI
Sbjct: 267 RFAEQRDKEALRIAKQNPNVLAMPSHTSCIQLAACGPKETLPMNPDLPADLFTSCLTSPI 326
Query: 299 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLF 358
+++RW+ ++ L+ +++ KIPGR DRRT LGELNWIFTA+TDTIAWNV P LF
Sbjct: 327 EISVRWYVLQNPFPNKLNLNMLLKIPGRLQDRRTPLGELNWIFTAITDTIAWNVFPKHLF 386
Query: 359 QRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQL 418
+RLFRQDL+VA+LFRNFLLAERIM +C P S P LPPTH H MW++WD+A + CLSQL
Sbjct: 387 RRLFRQDLMVAALFRNFLLAERIMLVHSCHPQSSPELPPTHDHPMWNSWDLAIDNCLSQL 446
Query: 419 PSLV-ADPNA---EYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFR 474
P ++ A+ EY+ S FFSEQLTAFEVWL G +KPP+QLP+VLQVLLSQ HR R
Sbjct: 447 PDMLDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLR 506
Query: 475 ALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 534
AL+LL +FLD+G WAVDLALS+GIFPYVLKLLQ+ EL+ +LVFIW +ILA+D SCQ D
Sbjct: 507 ALILLSKFLDLGVWAVDLALSIGIFPYVLKLLQSPAIELKPVLVFIWARILAVDDSCQAD 566
Query: 535 LVKDGGHAYFIRFLD-SMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 588
L+KD G+ YF++ L+ + +P E RAM AF+L+V G +GQ AC+ ++ C
Sbjct: 567 LLKDNGYGYFVQILNPNSSIFPSSNISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHC 626
Query: 589 LKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEV 648
L HL P+ L QW CLC+ +LWE+++EA+ G R +A ++ + PEV
Sbjct: 627 LSHLNS--PDS-----LLRQWACLCISQLWENYSEAKWSGTRDNAHVKLAEIIVDSVPEV 679
Query: 649 RASAVFSLGTLLDIGF 664
RAS + + T L GF
Sbjct: 680 RASVLTAFTTFL--GF 693
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| FB|FBgn0029840 raptor "raptor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 9.8e-222, Sum P(6) = 9.8e-222
Identities = 235/406 (57%), Positives = 294/406 (72%)
Query: 258 SNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPITMALRWFCKRSLLH--ESL 315
+N S ++CI LAAC A+E LP + + PAD+FTSCLTTPI +AL+W+ + L +
Sbjct: 410 TNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRI 469
Query: 316 DYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNF 375
LIDKIPG+ DRRT++GELNWIFTA+TDTIAWN LP +LFQRLFRQDLLVASLFRNF
Sbjct: 470 QSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNF 529
Query: 376 LLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFF 435
LLAERI+RS +C+P+S P LPP ++H MW AWD+ ++ L QLP ++ D NA Y+ PFF
Sbjct: 530 LLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEIL-DHNAPYRQLPFF 588
Query: 436 SEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALS 495
QLTAF+VWLD SE + PPEQLPIVLQVLLSQ HR RAL LL RFLD+GPWAV+LAL
Sbjct: 589 EHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALG 648
Query: 496 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYP 555
VGIFPYVLKLLQ++T ELR +LVFIW KILA+D SCQVDLVK+ + YF+ L
Sbjct: 649 VGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKE--YKYFLSVLQDTSVSK 706
Query: 556 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 615
E R ++AFVL+ IV GQ + ++ L+ +CL+ L ND L QWL +CLG
Sbjct: 707 EHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQL-----NDGSW--LLRQWLAICLG 759
Query: 616 KLWEDFTEAQTIGRRADA-PAIYVPLLSEPQPEVRASAVFSLGTLL 660
LW++F +A+ G R A +YV LL + PEVRA+AVF+LGT +
Sbjct: 760 MLWQNFEKARWSGARDLAHEKLYV-LLRDSIPEVRAAAVFALGTFI 804
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| UNIPROTKB|Q2KFQ3 MGCH7_ch7g632 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.8e-198, Sum P(2) = 2.8e-198
Identities = 308/616 (50%), Positives = 400/616 (64%)
Query: 73 ELRHEAFEASTPS-GPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARM 131
E RHE P P + + WR +DR+KT A+ +CLNI V+PPD +K +P A+M
Sbjct: 305 EKRHET--TGKPKLAPFE---IQDWRMRDRLKTVSAAIAVCLNIGVEPPDQLKTNPGAKM 359
Query: 132 ECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGE 191
E W DP QKALE IGK L QYE R RYK LDP+V++ KK C + R+ AK E
Sbjct: 360 EAWQDPTVTPAQKALENIGKALQSQYETLAMRTRYKQYLDPSVEDTKKFCLSLRKSAKDE 419
Query: 192 RVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVN 247
RVL HYNGHGVPKPT++GEIW+FNK YIP+ + DL WL+ P+I+V+DCS AG I++
Sbjct: 420 RVLLHYNGHGVPKPTSSGEIWVFNKNYTQYIPVSLYDLQHWLQAPTIFVWDCSEAGNILS 479
Query: 248 ---AFIELHDW--------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTT 296
F+E H+ ++Y + R I LAAC + + LP + PAD+FT CLTT
Sbjct: 480 NYHKFVEKHEKEEDEAVLRDPNHYKANFRPYIHLAACSSSQNLPTNPLLPADLFTCCLTT 539
Query: 297 PITMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHD 356
PI MAL +F ++ L L K+PGR +RRT LGELNWIFTA+TDTIAW LP
Sbjct: 540 PIEMALWFFVLQNPLQTGLTPERAKKLPGRLQERRTPLGELNWIFTAITDTIAWTTLPRH 599
Query: 357 LFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLS 416
LF++ FRQDL+VA+LFRNFLLA+R+M C+P S P LP T QH +W++WD+A + LS
Sbjct: 600 LFRKFFRQDLMVAALFRNFLLAQRVMSVYGCTPQSFPELPDTRQHPLWESWDLAVDQALS 659
Query: 417 QLPSLVADPNA----EYQPSPFFSEQLTAFEVWLDHGSE-HKKPPEQLPIVLQVLLSQCH 471
QLP L EYQ S FF+EQLTAF+V+L G +KPPEQLP+VLQVLLSQ H
Sbjct: 660 QLPMLERKETEGIEYEYQNSTFFTEQLTAFDVYLTRGDALQQKPPEQLPVVLQVLLSQQH 719
Query: 472 RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 531
R RAL+LLGRFLD+GPWAV LALS+GI+PYVLKLLQ+ EL+ ++VFIWT++LA+D SC
Sbjct: 720 RVRALILLGRFLDLGPWAVQLALSIGIYPYVLKLLQSAAAELKPVMVFIWTRVLAVDTSC 779
Query: 532 QVDLVKDGGHAYFIRFLDSMEAYP-----EQRAMAAFVLAVIVDGHRRGQEACIEAGLIH 586
Q DL+KD G+ YF L E P E +AM AF+LA++ G++ GQ C + ++
Sbjct: 780 QQDLIKDSGYQYFSNILKPSEGLPVANSDEHKAMCAFILAMLCKGYKPGQVVCNQTDIMG 839
Query: 587 VCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQP 646
CL H+ + PL QW CLC+ +LW D EA+ G R +APA L +
Sbjct: 840 YCLYHILN------EDNPLLRQWSCLCISQLWYDLPEAKWRGIRDNAPARLSILTKDGCS 893
Query: 647 EVRASAVFSLGTLLDI 662
EVRA+ ++++ T L I
Sbjct: 894 EVRAAVLYAMTTFLGI 909
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| C7J8E5 | RTOR2_ORYSJ | No assigned EC number | 0.7111 | 0.8883 | 0.9802 | yes | no |
| Q9LZW9 | RTOR2_ARATH | No assigned EC number | 0.7239 | 0.9665 | 0.9723 | no | no |
| Q0IQN5 | RTOR1_ORYSJ | No assigned EC number | 0.6945 | 0.9828 | 0.9720 | yes | no |
| Q93YQ1 | RTOR1_ARATH | No assigned EC number | 0.7874 | 0.9866 | 0.9866 | yes | no |
| Q8K4Q0 | RPTOR_MOUSE | No assigned EC number | 0.4131 | 0.8906 | 0.8966 | yes | no |
| Q8N122 | RPTOR_HUMAN | No assigned EC number | 0.4211 | 0.9025 | 0.9086 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVI1235 | hypothetical protein (1366 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.I.4198.1 | SubName- Full=Putative uncharacterized protein; (2483 aa) | • | • | • | 0.848 | |||||
 | grail3.0004013701 | hypothetical protein (317 aa) | • | • | • | 0.643 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1344 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 39/305 (12%)
Query: 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100
P ++ + IK+W+ E LL + H P + ++ D + L S +
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-----DGTYLASGSSDK 73
Query: 1101 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1160
IR+W D + + + T + GH V V + L +S +I +WD+
Sbjct: 74 TIRLW---DLETGECVRT----LTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDV 122
Query: 1161 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PH 1218
E + + + +D ++++ S G +A+ DG+++L+D+RT C H
Sbjct: 123 ETGKC-LTTLRGHTD-WVNSVAFSP-DGTFVASSSQDGTIKLWDLRT---GKCVATLTGH 176
Query: 1219 TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH 1278
T +V V +F P D K++S+S G I+ D+ T+ H ++++A
Sbjct: 177 TGEVNSV---AFSP--DGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPD 230
Query: 1279 APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337
++ASGS I+V+ L GE + T+ H SV L + P LA+GSAD
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHT--------NSVTSLAWSPDGKRLASGSAD 282
Query: 1338 ACVSI 1342
+ I
Sbjct: 283 GTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 27/223 (12%)
Query: 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM---VNPIPSSSDCSIS 1179
++GH GV C V + L +I +WDLE + + D + S
Sbjct: 5 LKGHTGGVTC----VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1239
A G LA+G D ++RL+D+ T + V + HT V ++F P D +
Sbjct: 61 A------DGTYLASGSSDKTIRLWDLETGE-CVRTLTGHTS---YVSSVAFSP--DGRIL 108
Query: 1240 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1299
S+S+ I+ D+ K T+ H ++++A +AS S IK++ L
Sbjct: 109 SSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167
Query: 1300 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342
+ H G VN + F P L + S+D + +
Sbjct: 168 KCVATLTGH-------TGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 7e-18
Identities = 75/334 (22%), Positives = 145/334 (43%), Gaps = 29/334 (8%)
Query: 1013 RSSVSKLNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDN 1071
S+ L + + E + P ++++ + IK+W+ + L+ S +
Sbjct: 47 SDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG 106
Query: 1072 HDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130
D +SKL L + S+LL +S +G +++W D +++GH V
Sbjct: 107 L--HDSSVSKLALSSPDGNSILLASSSLDGTVKLW------DLSTPGKLIRTLEGHSESV 158
Query: 1131 RCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189
+ + L + + +I LWDL + + + +S+L S G
Sbjct: 159 TS----LAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--STLAGHTDPVSSLAFSPDGGL 212
Query: 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249
+A+G DG++RL+D+ T +L + H+ V SF P D + + S S G I+
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS----SFSP--DGSLLASGSSDGTIR 266
Query: 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1309
D+R+ T+ H S+ ++A ++ASGS+ ++++ LE +L +
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL---- 322
Query: 1310 SFMAQKIGSVNCLTFHPY-QVLLAAGSADACVSI 1342
+ G V+ L+F P +L++ GS D + +
Sbjct: 323 -TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (209), Expect = 6e-17
Identities = 75/341 (21%), Positives = 131/341 (38%), Gaps = 41/341 (12%)
Query: 1014 SSVSKLNNPIACWDTRFEKGTKTALLQP--------FSP----IVVAADENERIKIWNYE 1061
+ S L+ + WD L FSP + + + IK+W+
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 1062 EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1121
L++ H P ++ + L+ S +G IR+W D S
Sbjct: 187 TGKPLSTLAGHTDPVSSLA----FSPDGGLLIASGSSDGTIRLW------DLSTGKLLRS 236
Query: 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1181
++ GH +VV + L + +I LWDL ++ + S S+ ++
Sbjct: 237 TLSGHS-----DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSV 290
Query: 1182 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1241
S G LA+G DG+VRL+D+ T + S+ V +SF P +
Sbjct: 291 AFSPD-GKLLASGSSDGTVRLWDLETGK--LLSSLTLKGHEGPVSSLSFSPDGSLL-VSG 346
Query: 1242 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1301
S G I+ D+R K T++ H ++ +++ +++SGS ++++ L L
Sbjct: 347 GSDDGTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 1302 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342
H S V L F P LA+GS+D + +
Sbjct: 405 LRNLDGHTS-------RVTSLDFSPDGKSLASGSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (163), Expect = 2e-11
Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 36/297 (12%)
Query: 1015 SVSKLNNPIACWDTRFEKGTKTALLQP-------FSP----IVVAADENERIKIWNYE-E 1062
S S L+ I WD R K T FSP ++ + + I++W+
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 1063 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1122
L ++ H D +S D SLL S +G IR+W D + L+ +
Sbjct: 232 KLLRSTLSGH--SDSVVSSFSP----DGSLLASGSSDGTIRLW---DLRSSSSLL---RT 279
Query: 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182
+ GH V V + L + ++ LWDLE + + + + +S+L+
Sbjct: 280 LSGHSSSVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1242
S ++ G DG++RL+D+RT L V+ +SF P D + S
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-----VLSVSFSP--DGRVVSSG 388
Query: 1243 SQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1299
S G ++ D+ +D H +++L +ASGS+ I+++ L+
Sbjct: 389 STDGTVRLWDLSTGSLLR-NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC 1321
T+ H G ++ +A ++A+GS IKV+ LE +L H G V
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-------TGPVRD 56
Query: 1322 LTFHPYQVLLAAGSADACVSI 1342
+ LA+GS+D + +
Sbjct: 57 VAASADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 1224 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1283
V ++F P D + + S G I+ D+ + T+ H G + +A +A
Sbjct: 11 GVTCVAFSP--DGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 1284 SGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343
SGS+ + I+++ LE + H S V+ + F P +L++ S D + +
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTS-------YVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 1344 S 1344
Sbjct: 121 D 121
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1344 | |||
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| PF14538 | 154 | Raptor_N: Raptor N-terminal CASPase like domain | 100.0 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.93 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.89 | |
| PTZ00420 | 568 | coronin; Provisional | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.88 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.86 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| PTZ00420 | 568 | coronin; Provisional | 99.84 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.84 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.84 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.82 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.79 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.77 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.76 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.76 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.75 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.74 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.73 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.72 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.71 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.7 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.69 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.66 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.66 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.66 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.64 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.64 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.61 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.61 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.6 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.59 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.59 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.53 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.52 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.52 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.49 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.48 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.46 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.45 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.44 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.42 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.42 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.41 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.4 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.39 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.37 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.33 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.31 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.31 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.29 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.28 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.27 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.23 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.23 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.21 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.17 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.16 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.15 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.14 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.14 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.1 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.05 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.02 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.99 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.95 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.95 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.94 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.9 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.88 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.87 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.87 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.86 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.84 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.82 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.8 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.79 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.76 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.73 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.71 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.69 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.69 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.67 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.65 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.63 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.63 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.62 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.6 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.59 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.57 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.57 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.55 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.52 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.49 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.43 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.36 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.35 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.35 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 98.3 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 98.29 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.27 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.27 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.24 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.24 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.2 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.17 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.17 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.17 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.16 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.07 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.03 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.95 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.94 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.94 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.93 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.89 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.87 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.84 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.84 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.82 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.81 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.75 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 97.73 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.73 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.69 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.68 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 97.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.66 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.64 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.63 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.59 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.54 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.53 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.48 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.47 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.45 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.4 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.4 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 97.38 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.38 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.37 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.35 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.31 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.18 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.18 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.16 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.1 | |
| PF00656 | 248 | Peptidase_C14: Caspase domain; InterPro: IPR011600 | 97.1 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.04 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.01 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.0 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.96 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.96 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.92 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.87 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 96.85 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.8 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.75 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.75 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.71 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.66 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.61 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.59 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.59 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.52 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.44 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.37 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.28 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 96.25 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.21 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.18 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.15 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.08 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.02 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.99 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.95 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.88 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.87 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.7 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.67 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 95.65 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.6 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.55 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.53 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.44 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.42 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.4 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.36 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.35 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.22 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.13 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.12 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 94.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.89 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.82 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.81 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.79 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 94.75 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.71 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.6 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.53 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 94.5 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.4 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.39 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 94.35 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 94.3 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.26 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.24 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.14 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.07 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.03 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.99 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.93 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.89 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.88 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 93.87 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.83 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.71 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 93.67 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 93.66 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.61 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.59 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 93.48 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 93.39 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.36 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 92.97 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 92.94 | |
| PRK10115 | 686 | protease 2; Provisional | 92.77 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.62 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 92.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.55 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.47 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 92.34 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 92.23 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.19 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.04 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 92.03 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.91 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 91.87 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.72 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 91.53 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.52 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.46 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 91.19 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 91.17 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.14 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.12 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.95 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 90.6 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.19 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.72 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 89.66 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 89.64 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 89.29 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 89.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 88.99 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.9 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.87 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 88.61 | |
| smart00115 | 241 | CASc Caspase, interleukin-1 beta converting enzyme | 88.41 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.34 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 88.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.15 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.91 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 87.9 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 87.86 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 87.84 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 87.56 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 87.49 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.38 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.34 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 87.09 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 87.07 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 86.81 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 86.26 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.17 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 86.14 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 86.04 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.59 | |
| cd00032 | 243 | CASc Caspase, interleukin-1 beta converting enzyme | 85.57 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 84.99 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.6 | |
| PF01650 | 256 | Peptidase_C13: Peptidase C13 family; InterPro: IPR | 84.55 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 84.54 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 84.51 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.26 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.06 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 83.75 |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-292 Score=2547.62 Aligned_cols=1307 Identities=57% Similarity=0.925 Sum_probs=1096.5
Q ss_pred cccchhhhcccccc--cccCcccC-CCCCCCCCCccCCCCcCCCCcCCCCccccccccccccccccccc--ccccccccc
Q 000700 3 LGDLMASRFSQSAV--VSNHLNDD-CGSAHGDVDLRRDSDTASSSYTNNASVTTITTTTTTSLAYLPQT--VVLCELRHE 77 (1344)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rh~ 77 (1344)
+||+|.|+.+++|+ |.||.+++ +.++|+|...+.+.... . ..++++...+...+++++.. +||+|+||.
T Consensus 1 ~~e~~~s~~~~~s~~~v~~~~~~~~~~~~~~d~~~~~~~~~~---~---~~~~~e~~~n~~~~~~l~~~~~ly~~d~Rh~ 74 (1387)
T KOG1517|consen 1 MGELSGSSPSSSSVQEVANHKVDNGADSSHDDTRSRLGDSIS---I---EQGFEEQYSNAQSLASLPQTFVLYLCDPRHD 74 (1387)
T ss_pred CCccccCCCCccchhhhccccccccccccccchhhhcccccc---c---ccchhhhhhhHHHHHhCcceEEEEecccccc
Confidence 58999999988877 89999854 44556665544332222 1 23467777888999999987 566999999
Q ss_pred cccCCCCCCCCCCCC--CCccccCCccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHH
Q 000700 78 AFEASTPSGPSDSGL--VSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQ 155 (1344)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~~~~~~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~ 155 (1344)
+ +| |++.+.+.. +++|||||||||++||||||||||||||||+|++||||+||||||+++++.||+|+||||||.
T Consensus 75 ~--~g-pi~~~~~~~~~~~~wR~keRmkT~svAlvlCLnigVDPPdvik~~pcaRle~WiDP~s~~~~KA~e~IG~nlq~ 151 (1387)
T KOG1517|consen 75 E--DG-PIETEDIVIEEIPDWRMKERMKTASVALVLCLNIGVDPPDVIKISPCARLECWIDPFSMGPPKALEAIGKNLQR 151 (1387)
T ss_pred c--cC-CCchhhcccccCCCchHHHHhhhhHhHHhhhhhcCcCCccccCCCcchhhhhccCccccCChHHHHHHHHHHHH
Confidence 9 66 676655544 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccceeccCCCHHHHHHHHHHhhccCCCceEEEEEcCCCCCCCCCCceEEEeCc----cccccHHHHHhhcCC
Q 000700 156 QYERWQPRARYKVQLDPTVDEVKKLCNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKT 231 (1344)
Q Consensus 156 qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~----y~p~~~~~l~~~~~~ 231 (1344)
|||+||+|+|||+++||++|||||+|+++||+||+||||||||||||||||+||||||||| |||+||||||+|||+
T Consensus 152 qYE~wqprtRYK~~lDP~vddVrKlc~slRr~ak~eRvLFHYNGHGVPkPT~nGEIWVFNK~fTQYIPlsi~dLqsWl~a 231 (1387)
T KOG1517|consen 152 QYERWQPRTRYKVCLDPTVDDVRKLCTSLRRNAKEERVLFHYNGHGVPKPTANGEIWVFNKSFTQYIPLSIFDLQSWLGA 231 (1387)
T ss_pred HHHhhChhhhhhhccCCcHHHHHHHHHHHhhhcCCceEEEEecCCCCCCCCCCCcEEEEecCcceeecccHHHHHhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CeEEEEeCCchhhHHHHH---Hhhccc----------CCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhcccchH
Q 000700 232 PSIYVFDCSAAGMIVNAF---IELHDW----------GASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPI 298 (1344)
Q Consensus 232 p~~~v~dc~~ag~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~d~ftscl~tP~ 298 (1344)
|+||||||++||+||.+| .|.+|+ +.++..+.|+|||++|||+++|+|||+|+||||+|||||||||
T Consensus 232 P~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~~~~y~dCi~LAaC~~~e~LPms~~lPADlFTsCLTTPI 311 (1387)
T KOG1517|consen 232 PTIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSGTSRYKDCIHLAACDAHETLPMSPELPADLFTSCLTTPI 311 (1387)
T ss_pred CeEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCCCcchhhhheeccCCcccccCCCCCccHHHHhhhhcCch
Confidence 999999999999887776 555542 2355678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhccCCCCcCcccCchhhHHHHHHHHHHHHhhccCCHHHHHHhhhhhhHHHHHHHHHHHH
Q 000700 299 TMALRWFCKRSLLHESLDYSLIDKIPGRQTDRRTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLA 378 (1344)
Q Consensus 299 ~~al~~~~~~~~~~~~~~~~~~~~ipg~~~~~~~~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d~~va~lfrnflla 378 (1344)
+|||+||++|++++..++.++|++|||+++|||||||||||||||||||||||+|||++||||||||||||+||||||||
T Consensus 312 ~isl~w~~~~s~l~~~i~~~lidkIPGrlnDRRT~LGELNWIFTAITDTIAWn~lPR~LFQrLFRQDLLvAsLFRNFLLA 391 (1387)
T KOG1517|consen 312 EISLKWFLMQSPLKDFIDESLIDKIPGRLNDRRTPLGELNWIFTAITDTIAWNSLPRELFQRLFRQDLLVASLFRNFLLA 391 (1387)
T ss_pred hHHHHHHHhhchhhhhhhhHHHhhCCccccccccccchhceeeeeeeceehhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCC-CCCcCC-CcchHHhHhhhHHHhcCCCCCCCCC
Q 000700 379 ERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADP-NAEYQP-SPFFSEQLTAFEVWLDHGSEHKKPP 456 (1344)
Q Consensus 379 ~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~-~~~~~~-~~ff~~~Ltafe~~L~~g~~~~~~p 456 (1344)
||||++|||||||.|+||+|++||||++||+|+|+||+|||.++.++ +++|++ ++||+|||||||+||++|++.++||
T Consensus 392 eRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~FFteQLTAFevWLd~gse~r~PP 471 (1387)
T KOG1517|consen 392 ERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPFFTEQLTAFEVWLDYGSESRTPP 471 (1387)
T ss_pred HHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCchHHHHHHHHHHHHHhccccCCCh
Confidence 99999999999999999999999999999999999999999777766 699999 6999999999999999999999999
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh
Q 000700 457 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 536 (1344)
Q Consensus 457 ~~lP~vLq~LlS~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~ 536 (1344)
|||||||||||||+||+|||+||+||||+|||||+|||++||||||||||||++.|||++||||||||||+||+||.||+
T Consensus 472 eQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv 551 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV 551 (1387)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhhhhccC-CCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000700 537 KDGGHAYFIRFLDS-MEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 615 (1344)
Q Consensus 537 k~~~~~yf~~~L~~-~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg 615 (1344)
|++||+||+++|++ ...++|||+|+|||||.|+++|+.||..|++.+++.+|+++|++ ++.|++|||+|||||
T Consensus 552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd------~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND------DPEPLLRQWLCICLG 625 (1387)
T ss_pred hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC------CccHHHHHHHHHHHH
Confidence 99999999999998 55557999999999999999999999999999999999999993 368999999999999
Q ss_pred HhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCC-CCCCC-hHHHHHHHHHHH---
Q 000700 616 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEG-DEECD-DDEKIRAEISII--- 690 (1344)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~e~~~~--- 690 (1344)
+||+||++|+|.+++.++|++|+.+|.|++||||||+|||||+|++...+.|.....+ .+..+ ++++..+|..++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL 705 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999998765444321111 11111 234556787777
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHHHhhccchHHHHHHhhcccccccccCCcCcccccccCCCCcc--cccccCcccccc
Q 000700 691 RSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAAAYSKPQSNSLLGSLPSLAHIKTTGSGSI--VSSQIGPLTRVG 768 (1344)
Q Consensus 691 ~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~ 768 (1344)
+.++..++|+||+||+|++++|++++..|.++|..+|+++++++....-...... ...+..++ ..+.+...|..+
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~~~lE~~~~~~---~~s~~~~~~~~~si~~~~~~s~ 782 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPESSSLEKSLPNK---AQSSHKFSDSGSSIVATTWMSL 782 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccchhhhhccCCcc---ccccccccccccceeeeechhh
Confidence 5888899999999999999999999999999999999999988654221111100 00111111 111122222211
Q ss_pred c-----cc----ccccCccccCC-CccccCCCCCCCCCCCCCCCCCCCcccCCCCCCccccCCCCCCCCchHHHHHHHHH
Q 000700 769 N-----EA----VVRDGRVSTSS-PLANAGLMHGSPLSDDSSQHSDSGILNDGVSNGVVNHMRPKPLDSAIYSQCVLAMC 838 (1344)
Q Consensus 769 ~-----~~----~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 838 (1344)
+ .. ...++..+.+. .++..+.+.+.++..++......+.......+|... .++...++.|++..+..+
T Consensus 783 L~rs~d~s~~~a~aa~~~i~~~~~~~~~~~~l~~~~la~d~~l~~~~~~ih~~v~~~~~~--~~~~~~~at~s~~v~~~~ 860 (1387)
T KOG1517|consen 783 LIRSLDPSLENAEAAEGIISYSLQGMSTSSELGGSFLADDSRLLSDSGNIHKTVRNGAVH--QPRSLDNATYSQSVKSML 860 (1387)
T ss_pred eeeccCcccchhHhhcCeeeccccccchhhhhcCCcccccHHHHHhHHHHHHHhhccccC--CCccccchHHHHHHHHhH
Confidence 1 00 11222222221 222334444556666555555545444444333321 233456789999999999
Q ss_pred hhcCCCChhhhhccchhhcccccccccccCcccCCCCCCCCCCCCCCCCCCCCCcccccccccCCC----------CCCC
Q 000700 839 TLAKDPSPRIATLGRRVLSIIGIEQVVTKPVMSMGNTSRPGDPTTAAPTPSLAGLVRSSSWFDMNG----------GHLP 908 (1344)
Q Consensus 839 ~L~~Dp~p~v~~~a~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rs~s~~~~~~----------~~~~ 908 (1344)
.+++||+|+|+.+++++.+.+..|+.++.+++.........+ ..++...++.++.++.++.. .+.+
T Consensus 861 ~~~k~P~prV~~~g~~v~~~~~~eq~~a~pskv~~~~g~~~~----~~~~~~~gL~~s~S~~d~~a~s~~~s~~~~~~~s 936 (1387)
T KOG1517|consen 861 RLAKDPNPRVSSLGRRVLSLIGKEQRVADPSKVSGPVGEAAS----SASTPLQGLALSSSGSDMHASSKDDSSLTDENKS 936 (1387)
T ss_pred hhhcCCCccccchhhhhhhhhchhccccCcccccCCCCcccc----cccchhhhcccccCCCCCCcCCcccccccccccC
Confidence 999999999999999999999888876655543332111111 11122334444555444421 2333
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC-CCcchhccccccCCCcCCcC
Q 000700 909 LKFRTPPVSPPRQSFLPGMRRVCSLEFRPHLINSPDSGLADPLLGSGDPSAVSERSLLP-PSTIYNWSCGHFSKPLLTAA 987 (1344)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~S~f~~ws~~~f~~P~m~~~ 987 (1344)
...+++++.|+...++.|.++.+...+.|+....|..+.+.+.....+ .++..+| ...|++||++||++|+|+..
T Consensus 937 ~n~et~~~~p~~~~~l~Ga~~~~~~~~~p~~~~~~~~~l~~p~~~a~~----~e~S~l~~~~~f~~Ws~~yF~eP~m~~~ 1012 (1387)
T KOG1517|consen 937 LNDETPPSGPPGTNGLAGARRVCPLAFRPRLEKHPDRGLADPLDGASG----SERSLLPTVTIFYDWSRKYFTEPQLKGA 1012 (1387)
T ss_pred cccCCCCCCCCCccccccCCcCCChhcCchhccCCCccccCccccccc----cccccccceeeechhhHhhhcccccCCc
Confidence 445566777788888888888888888887766665444444332222 2355677 45589999999999999999
Q ss_pred CCchHHHHHHHHH--HHHHHHHHHHhccc-cccccCC-cccccccCCCCC----eEEEEEcCCCCEEEEEECCCcEEEEE
Q 000700 988 DDTEEILARREER--EKFALEHIAKCQRS-SVSKLNN-PIACWDTRFEKG----TKTALLQPFSPIVVAADENERIKIWN 1059 (1344)
Q Consensus 988 e~de~~s~~r~~r--~~~~~e~i~~~q~~-~~~kl~~-~i~~Wd~~~~~~----I~~l~fspdg~~Latgs~dg~I~VWd 1059 (1344)
|++|+++.++++| ++.+++.+.+++.+ ...++.. .++.|+.+...+ ...+.|+|..+.++++++...|+|||
T Consensus 1013 e~dE~~s~~~~~r~wrr~R~e~i~kr~~~~~~~~lst~~i~~W~~~~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd 1092 (1387)
T KOG1517|consen 1013 EADEEGSEEREERLWRRNRNEKIIKRQASQEIQKLSTNPIGNWDQKFMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWD 1092 (1387)
T ss_pred cccchhhhHHHHHHHHHhhHHHHHHhhcccceeeeccccccchHHHHHhcCCCCCceeeecCCCceeEEcCCcceEEEEe
Confidence 9999999886555 66666666444444 2344433 468999887544 99999999999999999999999999
Q ss_pred CCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC-CceeEEeeeecccCCCCCccccceEEE
Q 000700 1060 YEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKPGVRCSNVVVD 1138 (1344)
Q Consensus 1060 ~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~~V~s~~~~v~ 1138 (1344)
++.++.+..|.++.++...|++++++|..|..++++|+.||.||||+.+... ++.+++++|..+.++...-...+++++
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~d 1172 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVD 1172 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeee
Confidence 9999999999999999999999999999999999999999999999998865 889999999999999988888888999
Q ss_pred EecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe--eeEeec
Q 000700 1139 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM--LVCSTR 1216 (1344)
Q Consensus 1139 ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~--~v~~~~ 1216 (1344)
|.+..++|+++|+...|+|||.+++. ++..++...+..|++++.....|+++++|+.||+|++||.|.... .+..++
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQ-VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccce-eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 99999999999999999999999999 999999999989999988888899999999999999999997653 555555
Q ss_pred CCCCCCCC--eEEEEEecCCCCCEEEEEECCCcEEEEECCCC-ccceEEEecCC--C-CeEEEEEcCCCCEEEEEeCCCe
Q 000700 1217 PHTQQVER--VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHR--G-SLSALAVHRHAPIIASGSAKQL 1290 (1344)
Q Consensus 1217 ~~~~h~~~--I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~-~~~v~tl~~h~--~-~Vtsla~spdg~~LasgS~Dg~ 1290 (1344)
.|... |..+.+++. +-..|++|+.||.|++||+|.. .+...++..|. + .++++.+|++.+++|+|+. +.
T Consensus 1252 ---~h~~~~~Iv~~slq~~-G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ 1326 (1387)
T KOG1517|consen 1252 ---EHNDVEPIVHLSLQRQ-GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL 1326 (1387)
T ss_pred ---ccCCcccceeEEeecC-CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce
Confidence 44465 999999997 3447999999999999999983 23334444443 3 5999999999999999998 99
Q ss_pred EEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1291 IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1291 I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+||++.|+.+..+++ +++|++++.+.+.|++|||+..+||+|+.|.+|.||.
T Consensus 1327 ikIy~~~G~~l~~~k~-n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1327 IKIYSLSGEQLNIIKY-NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred EEEEecChhhhccccc-CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 9999999999999999 9999999999999999999999999999999999984
|
|
| >PF14538 Raptor_N: Raptor N-terminal CASPase like domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-60 Score=482.77 Aligned_cols=149 Identities=75% Similarity=1.330 Sum_probs=147.9
Q ss_pred ccccceeEEEEEeecCCCCCCccccCCCcceEeccCCCCCChhhHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHH
Q 000700 101 RMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKL 180 (1344)
Q Consensus 101 ~~kt~~~~~~~cln~~~dpp~~~k~~~~~~~~~w~dp~~~~~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~ 180 (1344)
||||+++|||||||||+||||++|++||||+|||+||+.++++|++++||++||+|||+|++|+|||+++|||+||+|++
T Consensus 1 ~~kt~~~~l~lcln~g~dppd~~~~~~~ar~~cW~dp~~~~~~~~~~~I~~~l~~qY~~~~~~~~~~~~~dpt~e~~~~~ 80 (154)
T PF14538_consen 1 RMKTVSVALVLCLNIGVDPPDVVKTSPCARLECWIDPSNMPPSKASEEIGKNLQSQYESWQPRARYKQSLDPTVEDLKRL 80 (154)
T ss_pred CceeeEEEEEEeecCCCCCCCccccCCCceEEEecCCcccCchhHHHHHHHHHHHHHHHhCccCcEEEecCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCCCCCCCCCCceEEEeCc----cccccHHHHHhhcCCCeEEEEeCCchhhHHHHH
Q 000700 181 CNTCRRYAKGERVLFHYNGHGVPKPTANGEIWLFNK----YIPLPISDLDSWLKTPSIYVFDCSAAGMIVNAF 249 (1344)
Q Consensus 181 ~~~~r~~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~----y~p~~~~~l~~~~~~p~~~v~dc~~ag~~~~~~ 249 (1344)
|.++||+|++|||||||||||||+||++|||||||| |||+|++||++|+|+|+||||||+|||.||++|
T Consensus 81 ~~~~R~~a~~~RvLFHYnGhGvP~Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~~AG~il~~f 153 (154)
T PF14538_consen 81 CQSLRRNAKDERVLFHYNGHGVPRPTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCSNAGSILNAF 153 (154)
T ss_pred HHHHHhhCCCceEEEEECCCCCCCCCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECCcHHHHHHhc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999998
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-56 Score=530.04 Aligned_cols=257 Identities=19% Similarity=0.241 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHhhhccCcccccCCCCCCCCCCchhhhHHHHHHHHHhcCccccCCCCCCcCCCcchHHhHhhhHHHhcCC
Q 000700 370 SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHG 449 (1344)
Q Consensus 370 ~lfrnflla~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Ltafe~~L~~g 449 (1344)
..|..=|=|=-+-=.||..-=.=| ++.-++|+++|||.||+ ++|..+.+|||+|
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PP-----------eQLPiVLQVLLSQvHRl---------------RAL~LL~RFLDlG 501 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPP-----------EQLPIVLQVLLSQVHRL---------------RALVLLARFLDLG 501 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCCh-----------HhcchHHHHHHHHHHHH---------------HHHHHHHHHhccc
Confidence 455555555555555554321111 57789999999999999 9999999999999
Q ss_pred CCCCCC---CCchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHH---------hcCchhhhHHhccC-C--chhhh
Q 000700 450 SEHKKP---PEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLAL---------SVGIFPYVLKLLQT-T--TPELR 514 (1344)
Q Consensus 450 ~~~~~~---p~~lP~vLq~LlS~~~rlral~ll~~fld~~~wAv~lal---------~~gifpyvlklL~s-~--~~elr 514 (1344)
+|+... .||||||||+|||++.+||++++ || ||+|||+ +.+++-||++.|+. + .+|+|
T Consensus 502 pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLV---FI----WAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqr 574 (1387)
T KOG1517|consen 502 PWAVDLALSVGIFPYVLKLLQSSARELRPILV---FI----WAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQR 574 (1387)
T ss_pred hhhhhhhhccchHHHHHHHhccchHhhhhhHH---HH----HHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHH
Confidence 999654 49999999999999999999999 99 9999996 67889999999987 3 46999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000700 515 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 594 (1344)
Q Consensus 515 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 594 (1344)
+|++||+|.|+..++-||.+|+..+++..|+.+|++.. .|++|||+|+||++||+||..+||.|.++++|++++.+|.
T Consensus 575 tmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls- 652 (1387)
T KOG1517|consen 575 TMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS- 652 (1387)
T ss_pred HHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc-
Confidence 99999999999999999999999999999999999864 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhcc----chHHHHhh------------hccCch---hhHhhhccCCCHHHHHHHHHH
Q 000700 595 SMPNDAQTEPLFLQWLCLCLGKLWED----FTEAQTIG------------RRADAP---AIYVPLLSEPQPEVRASAVFS 655 (1344)
Q Consensus 595 ~~~~~~~~~p~~R~w~~l~Lg~l~~~----~~~~~~~~------------~~~~~~---~~l~~ll~D~sP~VRaa~v~a 655 (1344)
|++||||++++++||+|+++ +++..... ++..+. ..++.+++|++|+||+|++++
T Consensus 653 ------D~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 653 ------DPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred ------CccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999987 55544333 444444 478889999999999999999
Q ss_pred HhhhcccCcCCC
Q 000700 656 LGTLLDIGFDSC 667 (1344)
Q Consensus 656 L~~~i~~~~~~~ 667 (1344)
|++|+-.+..++
T Consensus 727 ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 727 LSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHhhHHHh
Confidence 999996665443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=328.23 Aligned_cols=286 Identities=17% Similarity=0.300 Sum_probs=256.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
..|+..|.|+.|+|+|..|++|+.|.++++||..+...+.+.++|. ..|.+++| +|||..|++|+.||.|++||.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~---~WVlcvaw--sPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK---NWVLCVAW--SPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc---cEEEEEEE--CCCcchhhccccCCeEEEecC
Confidence 3577899999999999999999999999999999999999999999 99999999 899999999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEec-----CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-----QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~-----~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
.+ +.+. . +.+.+|...|.+ ++|.| ..+.+++++.||.|+|||+..+. ++..+.+|... |+|+.
T Consensus 187 kt--g~~~-g---~~l~gH~K~It~----Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~-VTCvr 254 (480)
T KOG0271|consen 187 KT--GQQI-G---RALRGHKKWITA----LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTAS-VTCVR 254 (480)
T ss_pred CC--CCcc-c---ccccCcccceeE----EeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccc-eEEEE
Confidence 76 3322 2 568999999998 89975 46688888999999999999999 99999999887 99994
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-----------------------------
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG----------------------------- 1233 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~----------------------------- 1233 (1344)
+- ...++++|+.|++|++|+...+. +.+ .+++|..+|+.++.+-+
T Consensus 255 -wG-G~gliySgS~DrtIkvw~a~dG~-~~r---~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 255 -WG-GEGLIYSGSQDRTIKVWRALDGK-LCR---ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred -Ec-CCceEEecCCCceEEEEEccchh-HHH---hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 42 45699999999999999998876 444 55688899999998822
Q ss_pred -----CCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEecc
Q 000700 1234 -----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1307 (1344)
Q Consensus 1234 -----~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~ 1307 (1344)
..+..+++|+.|+++.+|+.....+++..+.+|..-|+.+.|+||++++|++|.|+.|++|| .+|+.+.++++
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG- 407 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG- 407 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-
Confidence 02346999999999999999887789999999999999999999999999999999999999 78999999999
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1308 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1308 h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|- +.|..++|+.|.++|++|+.|.+++||+
T Consensus 408 Hv-------~~VYqvawsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 408 HV-------AAVYQVAWSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred cc-------ceeEEEEeccCccEEEEcCCCceEEEEE
Confidence 65 8999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.85 Aligned_cols=281 Identities=20% Similarity=0.303 Sum_probs=256.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
.+|..+.|+.|+++||||+.+|.++||+..+...+.+|.+|. +.|.++.|.|-.++..++||+.||++++|++...
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 579999999999999999999999999999999999999999 9999999954334679999999999999999652
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEE
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1191 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L 1191 (1344)
. ....+.+|...|.. ++|+|+|.+|.+++.|.+-++||++++. .+....+|..+ |.++ .++++|.++
T Consensus 252 ---~---~l~~l~gH~~RVs~----VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~-v~~i-af~~DGSL~ 318 (459)
T KOG0272|consen 252 ---T---PLQDLEGHLARVSR----VAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKG-VFSI-AFQPDGSLA 318 (459)
T ss_pred ---c---chhhhhcchhhhee----eeecCCCceeeecccccchhhcccccch-hhHhhcccccc-ccee-EecCCCcee
Confidence 2 22568899999988 9999999999999999999999999998 77777777776 9999 788999999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeE
Q 000700 1192 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1271 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vt 1271 (1344)
++|+.|..-||||+|++.+ +.. +.+|...|.+|+|+|+ |..|+|||.|++++|||++.. ..+.++.+|..-|+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~-im~---L~gH~k~I~~V~fsPN--Gy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRC-IMF---LAGHIKEILSVAFSPN--GYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVS 391 (459)
T ss_pred eccCccchhheeecccCcE-EEE---ecccccceeeEeECCC--ceEEeecCCCCcEEEeeeccc-ccceecccccchhh
Confidence 9999999999999999984 333 4478899999999999 999999999999999999987 78999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1272 ALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1272 sla~sp-dg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.|+| .|.+|+|++.|++++||. .++.+++++.+ |+ +.|.++..++++.+++|++.|.++++|.
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He-------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HE-------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcC-Cc-------cceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 788999999999999999 66788999998 77 8999999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=299.23 Aligned_cols=286 Identities=16% Similarity=0.283 Sum_probs=256.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
..|...|.++.|++|.++|++++.||.+.|||.-+...++.+.... ..|..++| +|.|+++++|+-|+...||++
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s---~WVMtCA~--sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAY--SPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc---eeEEEEEE--CCCCCeEEecCcCceeEEEec
Confidence 4567899999999999999999999999999999999999888777 89999999 899999999999999999999
Q ss_pred cCC--CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1108 YDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1108 ~~~--~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
... ++..... +.+.+|.+-+.+ +.|- ++++|++++.|.+..+||+++++ .+..+.+|.+. |.++ ..+
T Consensus 127 s~~d~~g~~~v~---r~l~gHtgylSc----C~f~-dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD-V~sl-sl~ 195 (343)
T KOG0286|consen 127 STRDAEGNVRVS---RELAGHTGYLSC----CRFL-DDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD-VMSL-SLS 195 (343)
T ss_pred ccccccccceee---eeecCccceeEE----EEEc-CCCceEecCCCceEEEEEcccce-EEEEecCCccc-EEEE-ecC
Confidence 753 2333333 668999998888 6665 58999999999999999999999 99999999887 9999 555
Q ss_pred C-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1186 V-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1186 ~-dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
| +++.|++|+.|+..++||+|.+. .++. +.+|.+.|++|.|.|+ |.-+++|+.|++.++||+|.. ..+..+.
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~-c~qt---F~ghesDINsv~ffP~--G~afatGSDD~tcRlyDlRaD-~~~a~ys 268 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQ-CVQT---FEGHESDINSVRFFPS--GDAFATGSDDATCRLYDLRAD-QELAVYS 268 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcc-eeEe---ecccccccceEEEccC--CCeeeecCCCceeEEEeecCC-cEEeeec
Confidence 6 99999999999999999999996 5554 4578899999999999 999999999999999999987 6777776
Q ss_pred cC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000700 1265 AH--RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1265 ~h--~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
.. ..+|++++|+..|++|.+|..|.++.||| +.++.+..+.+ |+ +.|+++..+|||..|++|+.|.+++
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G-He-------NRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG-HE-------NRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec-cC-------CeeEEEEECCCCcEEEecchhHhee
Confidence 32 45899999999999999999999999999 89999999998 77 8999999999999999999999999
Q ss_pred EcC
Q 000700 1342 IHS 1344 (1344)
Q Consensus 1342 IWd 1344 (1344)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=316.25 Aligned_cols=284 Identities=19% Similarity=0.330 Sum_probs=245.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEECCCeEEEE
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l-~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIW 1105 (1344)
|...|.|++|+|||+.||+|+.||.|++||.++|+.+ ..+.+|. ..|++++|.+ .+...+|++++.||.|+||
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~---K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK---KWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc---cceeEEeecccccCCCccceecccCCCCEEEE
Confidence 4577999999999999999999999999999998655 5689999 9999999942 2467899999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE-
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS- 1184 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~- 1184 (1344)
|+.. +... ..+.+|+.+|+| +.|- ..+.+++|+.|++|++|+...+. +...+++|... |+.++..
T Consensus 233 d~~~--~~~~-----~~lsgHT~~VTC----vrwG-G~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahw-vN~lalsT 298 (480)
T KOG0271|consen 233 DTKL--GTCV-----RTLSGHTASVTC----VRWG-GEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHW-VNHLALST 298 (480)
T ss_pred EccC--ceEE-----EEeccCccceEE----EEEc-CCceEEecCCCceEEEEEccchh-HHHhhcccchh-eeeeeccc
Confidence 9865 3333 458999999998 8995 46799999999999999999999 99999998776 8887322
Q ss_pred ---------cCC-------------------------CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000700 1185 ---------QVH-------------------------GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1185 ---------s~d-------------------------g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~ 1230 (1344)
.+. +..+++|+.|+++.+|+....++.+. ...+|..-|+.+.|
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~---rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT---RMTGHQALVNHVSF 375 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh---hhhchhhheeeEEE
Confidence 122 23599999999999999876654444 34578899999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE-EEeccCC
Q 000700 1231 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG-TIRYHHP 1309 (1344)
Q Consensus 1231 sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~-~l~~~h~ 1309 (1344)
+|+ +++++++|.|..|++||.+++ +.+.+|++|-+.|+.++|+.|.++|++||.|.+++||++..+.+. .+.+ |.
T Consensus 376 SPd--~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG-h~ 451 (480)
T KOG0271|consen 376 SPD--GRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG-HA 451 (480)
T ss_pred CCC--ccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC-CC
Confidence 999 999999999999999999998 899999999999999999999999999999999999997665543 4555 54
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1310 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1310 ~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..|.++.|+|||..+++|+.|..+++|.
T Consensus 452 -------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 -------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999999999999999994
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=293.91 Aligned_cols=281 Identities=19% Similarity=0.343 Sum_probs=242.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
...+|..+.|.|+|+.|++|+..|.+.+|+..+-..-...+.|. ..|+++.| ++++.++++|+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD---s~Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD---SPVRTMKW--SHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc---ccceeEEE--ccCCCEEEEcCCCceEEecccch
Confidence 34679999999999999999999999999975444444467898 89999999 78999999999999999999855
Q ss_pred CCCceeEEeeeecccCC-CCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1110 QKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h-~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
...+ .+..| ...|++ ++|+|.+..++++++||+|+|||....+ ....+.+|.- .|.++ .|+|..
T Consensus 170 --nnVk------~~~ahh~eaIRd----lafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgw-dVksv-dWHP~k 234 (464)
T KOG0284|consen 170 --NNVK------IIQAHHAEAIRD----LAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGW-DVKSV-DWHPTK 234 (464)
T ss_pred --hhhH------HhhHhhhhhhhe----eccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCC-Cccee-ccCCcc
Confidence 2222 23444 488888 9999999999999999999999999887 6777777755 49999 677888
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
.++++|+.|..|++||.|++.+ +.+ ..+|+..|..+.|+++ +++|+++|.|..++++|+|+. +.+.++++|+.
T Consensus 235 gLiasgskDnlVKlWDprSg~c-l~t---lh~HKntVl~~~f~~n--~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkk 307 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSC-LAT---LHGHKNTVLAVKFNPN--GNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKK 307 (464)
T ss_pred ceeEEccCCceeEeecCCCcch-hhh---hhhccceEEEEEEcCC--CCeeEEccCCceEEEEehhHh-HHHHHhhcchh
Confidence 8999999999999999999984 443 3377899999999999 899999999999999999977 78899999999
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1269 SLSALAVHRH-APIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1269 ~Vtsla~spd-g~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.|+++.|||- ..+|.+|+.||.|..|.+. .+++..+...| .+.|++++|||-|.+|++|+.|.++++|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-------d~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-------DGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccCCCccc-------ccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999995 5589999999999999966 55555555434 48999999999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=263.18 Aligned_cols=268 Identities=16% Similarity=0.287 Sum_probs=230.2
Q ss_pred EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeeccc
Q 000700 1045 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1124 (1344)
Q Consensus 1045 ~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1124 (1344)
+|++++.|-+|++|...+|.+..+++-.. +.|+.+.. .+++..|++++.- .||+||+.+.+.. .+ .++.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLei--Tpdk~~LAaa~~q-hvRlyD~~S~np~--Pv---~t~e 80 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPD---SQVNRLEI--TPDKKDLAAAGNQ-HVRLYDLNSNNPN--PV---ATFE 80 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCc---cceeeEEE--cCCcchhhhccCC-eeEEEEccCCCCC--ce---eEEe
Confidence 89999999999999999999999999777 89999999 7899999988765 7999999884333 33 4578
Q ss_pred CCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1204 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwD 1204 (1344)
+|...|.. +.|+.+|..+++||+||+++|||++... +.+.+.. .++|+++ ..+|+...|++|..+|.|++||
T Consensus 81 ~h~kNVta----VgF~~dgrWMyTgseDgt~kIWdlR~~~-~qR~~~~--~spVn~v-vlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 81 GHTKNVTA----VGFQCDGRWMYTGSEDGTVKIWDLRSLS-CQRNYQH--NSPVNTV-VLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred ccCCceEE----EEEeecCeEEEecCCCceEEEEeccCcc-cchhccC--CCCcceE-EecCCcceEEeecCCCcEEEEE
Confidence 99888888 8999999999999999999999999977 6555554 3569999 7888999999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-----cceEEEecCCCCeEEEEEcCCC
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-----DAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-----~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
++........+. +-...|.++++.|+ |.+++.+...|..++|++-... +++..++.|.+.+..+.+||++
T Consensus 153 l~~~~c~~~liP---e~~~~i~sl~v~~d--gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 153 LGENSCTHELIP---EDDTSIQSLTVMPD--GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred ccCCccccccCC---CCCcceeeEEEcCC--CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 998763333222 22478999999999 9999999999999999987532 5778899999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCc--eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1280 PIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd~~g~--~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
++||++|.|.+++||+.++- .-..+++ |. ..++..+||.||.||+||+.|+.+++|+
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~g-h~-------rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTG-HQ-------RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeec-CC-------ceEEeeeeccCccEEEecCCCCceeecc
Confidence 99999999999999998765 2234555 44 7999999999999999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=277.44 Aligned_cols=284 Identities=19% Similarity=0.304 Sum_probs=253.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
+..+|+.+.|+|+...++++++|++|++||+.+|+....+++|. ..+.++.| +..|.+|++++.|=.+++||..+
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHT---DSVFDISF--DASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccc---cceeEEEE--ecCccEEEecCCccchhheeHHH
Confidence 34679999999999999999999999999999999999999999 88999999 67899999999998899999854
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
. ..+.+.+.+|...|.+ ++|-|.+.++++++.|.+|+.||+.++. ++.++.+|.+. |..+ ....||.
T Consensus 182 ~------~~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ew-vr~v-~v~~DGt 248 (406)
T KOG0295|consen 182 F------FRCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEW-VRMV-RVNQDGT 248 (406)
T ss_pred H------HHHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecccce-eEEeccCchHh-EEEE-EecCCee
Confidence 1 2233667889988888 8888999999999999999999999999 99999999886 8888 6778999
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------------CCCCEEEEEECCCcEEEEECCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------------LDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~-------------~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
++++++.|.+|++|-..+++ ... .+++|.-.|-+++|-|. .++.++.+|+.|++|++||+.++
T Consensus 249 i~As~s~dqtl~vW~~~t~~-~k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQ-CKA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred EEEecCCCceEEEEEeccch-hhh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 99999999999999998885 222 34467789999999775 13469999999999999999998
Q ss_pred ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs 1335 (1344)
.++.++.+|...|..++|||.|++|+++.+|++++|||+ ++.++.++.. |+ .-|+++.|+.+..+++||+
T Consensus 325 -~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a-h~-------hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 325 -MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA-HE-------HFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred -eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC-Cc-------ceeEEEecCCCCceEEecc
Confidence 899999999999999999999999999999999999995 5677888877 77 6699999999999999999
Q ss_pred CCCeEEEcC
Q 000700 1336 ADACVSIHS 1344 (1344)
Q Consensus 1336 ~Dg~I~IWd 1344 (1344)
.|..+++|.
T Consensus 396 Vdqt~KvwE 404 (406)
T KOG0295|consen 396 VDQTVKVWE 404 (406)
T ss_pred ccceeeeee
Confidence 999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=285.68 Aligned_cols=241 Identities=20% Similarity=0.349 Sum_probs=221.4
Q ss_pred CCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1030 FEKGTKTALLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1030 ~~~~I~~l~fspd--g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
|...+.++.|+|. +..||+|+.||++++|++++...+..+.+|. .+|..++| +|+|.+|+|++.|.+-++||+
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~---~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL---ARVSRVAF--HPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch---hhheeeee--cCCCceeeecccccchhhccc
Confidence 5678999999997 5599999999999999999889999999999 99999999 799999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.+ +...+. ..||..+|.+ ++|+++|..+++||.|..=+|||++++. ++..+.+|... |.+| .|+|+
T Consensus 291 ~t--k~ElL~-----QEGHs~~v~~----iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~-I~~V-~fsPN 356 (459)
T KOG0272|consen 291 ET--KSELLL-----QEGHSKGVFS----IAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKE-ILSV-AFSPN 356 (459)
T ss_pred cc--chhhHh-----hcccccccce----eEecCCCceeeccCccchhheeecccCc-EEEEecccccc-eeeE-eECCC
Confidence 77 332222 6799999998 9999999999999999999999999999 99999998776 9999 78999
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
|..+++|+.|++++|||+|.... ..+ ..+|.+-|+.|.|+|. .|.+|+|++.|++++||..++. .+++++.+|.
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~-ly~---ipAH~nlVS~Vk~~p~-~g~fL~TasyD~t~kiWs~~~~-~~~ksLaGHe 430 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSE-LYT---IPAHSNLVSQVKYSPQ-EGYFLVTASYDNTVKIWSTRTW-SPLKSLAGHE 430 (459)
T ss_pred ceEEeecCCCCcEEEeeeccccc-cee---cccccchhhheEeccc-CCeEEEEcccCcceeeecCCCc-ccchhhcCCc
Confidence 99999999999999999998884 333 3477899999999995 6999999999999999999998 8999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
+.|.++++++++.+++|++.|+++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=257.39 Aligned_cols=289 Identities=16% Similarity=0.231 Sum_probs=235.7
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECC-----CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1028 TRFEKGTKTALLQPFS-PIVVAADENERIKIWNYE-----EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg-~~Latgs~dg~I~VWd~~-----tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
..|.+.|+.++..+.+ +.+++++.|.++.+|++. .|..++.+.+|. ..|+.+.. ++||++.++++.||+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~--s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVL--SSDGNFALSASWDGT 86 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc---eEecceEE--ccCCceEEeccccce
Confidence 3567889999998874 488999999999999764 567899999999 89999998 789999999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeeE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISA 1180 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~-~~~Vts 1180 (1344)
+++||+.. ++.. +.+.+|...|.+ +++++++..+++|+.|++|++|+...+. ..++..+. ...|+|
T Consensus 87 lrlWDl~~--g~~t-----~~f~GH~~dVls----va~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 87 LRLWDLAT--GEST-----RRFVGHTKDVLS----VAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSC 153 (315)
T ss_pred EEEEEecC--CcEE-----EEEEecCCceEE----EEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEE
Confidence 99999977 3333 337899999988 9999999999999999999999998765 45555443 556999
Q ss_pred EEEEcCC--CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCcc
Q 000700 1181 LTASQVH--GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1258 (1344)
Q Consensus 1181 L~~~s~d--g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~ 1258 (1344)
+ .|+|+ ..+|++++.|++|++||+++.+ ... .+.+|.+.++.++++|+ |..+++|+.||.+.+||++.+ +
T Consensus 154 v-rfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~---~~~gh~~~v~t~~vSpD--GslcasGgkdg~~~LwdL~~~-k 225 (315)
T KOG0279|consen 154 V-RFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRT---TFIGHSGYVNTVTVSPD--GSLCASGGKDGEAMLWDLNEG-K 225 (315)
T ss_pred E-EEcCCCCCcEEEEccCCceEEEEccCCcc-hhh---ccccccccEEEEEECCC--CCEEecCCCCceEEEEEccCC-c
Confidence 9 55565 6799999999999999999876 332 45688999999999999 999999999999999999998 6
Q ss_pred ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCcc-ccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1259 AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-MAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1259 ~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f-~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.+.++. |...|.+++|+|+...|+.+.. ..|+|||+. +..+..++..-.+. .....-...+++|+++|..|.+|-.
T Consensus 226 ~lysl~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eeEecc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 777765 7789999999999988887765 459999964 45555554301111 0111223556899999999999999
Q ss_pred CCeEEEcC
Q 000700 1337 DACVSIHS 1344 (1344)
Q Consensus 1337 Dg~I~IWd 1344 (1344)
|+.|++|.
T Consensus 304 d~~irv~q 311 (315)
T KOG0279|consen 304 DNVIRVWQ 311 (315)
T ss_pred CCcEEEEE
Confidence 99999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=265.50 Aligned_cols=282 Identities=25% Similarity=0.437 Sum_probs=240.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|..+|++++|+|++++|++++.+|.|++|+..+++....+..|. ..+..+.| .++++++++++.||.|++|+..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT---GPVRDVAA--SADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC---cceeEEEE--CCCCCEEEEEcCCCeEEEEEcC
Confidence 466889999999999999999999999999999988888888888 78889999 6788899999999999999996
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
.. +.. ..+..|...+.+ +.|++++..+++++.+|.|++||+++.. ....+..|... |+++ .+.+++
T Consensus 82 ~~--~~~-----~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~ 147 (289)
T cd00200 82 TG--ECV-----RTLTGHTSYVSS----VAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDW-VNSV-AFSPDG 147 (289)
T ss_pred cc--cce-----EEEeccCCcEEE----EEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCc-EEEE-EEcCcC
Confidence 52 111 234567767776 8999886667766779999999999887 78888766554 9999 667778
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
.++++++.||.|++||++..+ ....+. .|...|.++.|+|+ ++.+++++.||.|++||++.+ ..+..+..|..
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~-~~~~~~---~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~ 220 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGK-CVATLT---GHTGEVNSVAFSPD--GEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHEN 220 (289)
T ss_pred CEEEEEcCCCcEEEEEccccc-cceeEe---cCccccceEEECCC--cCEEEEecCCCcEEEEECCCC-ceecchhhcCC
Confidence 888888889999999998776 344333 55679999999999 889999999999999999987 78888888999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.++.|++++.++++++.||.|++||.. ++.+..+.. |. ..|.+++|++++.+|++++.||.|++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~-------~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-HT-------NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-cC-------CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999889999999965 677777766 54 7899999999999999999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=269.84 Aligned_cols=279 Identities=18% Similarity=0.272 Sum_probs=241.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
...|++++|+.+|..||+|+.||.++||+.. |.++.++..|. ++|.++.| +..|.+|++++.||++.+||..+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~Hk---gPI~slKW--nk~G~yilS~~vD~ttilwd~~~- 307 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHK---GPIFSLKW--NKKGTYILSGGVDGTTILWDAHT- 307 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccC---CceEEEEE--cCCCCEEEeccCCccEEEEeccC-
Confidence 4679999999999999999999999999976 88899999999 99999999 78999999999999999999976
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~ 1190 (1344)
+..... +.-|..+.. .+.|. +...+++++.||.|+|+-+.... ++.++.+|++. |.+| -+.+.|.+
T Consensus 308 -g~~~q~-----f~~~s~~~l----DVdW~-~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~-V~al-k~n~tg~L 373 (524)
T KOG0273|consen 308 -GTVKQQ-----FEFHSAPAL----DVDWQ-SNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE-VNAL-KWNPTGSL 373 (524)
T ss_pred -ceEEEe-----eeeccCCcc----ceEEe-cCceEeecCCCceEEEEEecCCC-cceeeecccCc-eEEE-EECCCCce
Confidence 443333 444544433 38997 56788888999999999999888 99999998876 9999 67789999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC-------CCCCEEEEEECCCcEEEEECCCCccceEEE
Q 000700 1191 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG-------LDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263 (1344)
Q Consensus 1191 L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~-------~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl 1263 (1344)
|++++.|++++||...... ... .+.+|...|..+.|+|. ..+..+++++.|++|++||+..+ .++.++
T Consensus 374 LaS~SdD~TlkiWs~~~~~-~~~---~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f 448 (524)
T KOG0273|consen 374 LASCSDDGTLKIWSMGQSN-SVH---DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTL 448 (524)
T ss_pred EEEecCCCeeEeeecCCCc-chh---hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEee
Confidence 9999999999999987665 333 34477899999999997 13457999999999999999998 899999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1264 ~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
..|..+|.+++|+|+|+++|+|+.||.|.+|++ .++..+...+ .+.|..++|+.+|..|..+-.||.+.+
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---------~~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---------TGGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---------CCeEEEEEEcCCCCEEEEEecCCCceE
Confidence 999999999999999999999999999999995 5777777665 367999999999999999999999887
Q ss_pred cC
Q 000700 1343 HS 1344 (1344)
Q Consensus 1343 Wd 1344 (1344)
-|
T Consensus 520 ld 521 (524)
T KOG0273|consen 520 LD 521 (524)
T ss_pred EE
Confidence 43
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=278.62 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=248.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
+..+|.++.|||.++.++++-.+|.|.|||+++...++.|.-.. .+|.+..|+ .-.+.+++|++|..||||+..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~---~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc---cchhhheee--eccceEEEecCCceEEEEeccc
Confidence 45789999999999999999999999999999999999999888 789999995 4678999999999999999865
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
.+.+ +.+..|..-|++ ++.+|...+++++++|-.|++||.+.+-.|.+++.+|... |.++++.+.|.+
T Consensus 87 ----~ekV---~~FeAH~DyIR~----iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-VMqv~fnPkD~n 154 (794)
T KOG0276|consen 87 ----GEKV---KTFEAHSDYIRS----IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-VMQVAFNPKDPN 154 (794)
T ss_pred ----ceee---EEeeccccceee----eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE-EEEEEecCCCcc
Confidence 2333 457889999999 8899999999999999999999999886588999998776 999988888999
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
.|++++-|++|++|.+.... ... ++++|...|+++.+-+.++..+|++|+.|.+|+|||..+. .+++++.+|...
T Consensus 155 tFaS~sLDrTVKVWslgs~~-~nf---Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N 229 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPH-PNF---TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN 229 (794)
T ss_pred ceeeeeccccEEEEEcCCCC-Cce---eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc
Confidence 99999999999999998877 444 3458889999999988745679999999999999999997 899999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
|+.+.|||.-+++++||+||+++||+.. -+...++.. ..+.|+|++-++.+..++.|...|.|.|
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--------gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--------GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--------CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999999943 333344433 2378999999999999999988887754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=268.87 Aligned_cols=282 Identities=21% Similarity=0.368 Sum_probs=239.4
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC--c--EEEEee------CCC-CCCCCeEEEEEEeeCCCCEEEEEE
Q 000700 1030 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEED--T--LLNSFD------NHD-FPDKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg--~--~l~~~~------~h~-~~~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
|..+|.+.+|+|-.. .+++|+.+-+.++|++... . ....++ ++. +....|++++| +.+|.+|++|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEee
Confidence 778999999999877 9999999999999998641 1 111111 111 12368999999 68999999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1177 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~ 1177 (1344)
.||.++||+... . ++ .++..|.++|.+ +.|+..|.+|++++.||++.+||..++. ..+.+..|...
T Consensus 255 ~~G~~riw~~~G---~--l~---~tl~~HkgPI~s----lKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~- 320 (524)
T KOG0273|consen 255 EDGEARIWNKDG---N--LI---STLGQHKGPIFS----LKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAP- 320 (524)
T ss_pred cCcEEEEEecCc---h--hh---hhhhccCCceEE----EEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCC-
Confidence 999999999744 2 22 457889999988 9999999999999999999999999998 77888777553
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
-..+.|. +...|++.+.||.|+++.+.... ++.++ .+|.+.|.++.|.|. +.+|+++|.|++++||.....
T Consensus 321 ~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~-P~~t~---~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~- 391 (524)
T KOG0273|consen 321 ALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR-PVKTF---IGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS- 391 (524)
T ss_pred ccceEEe--cCceEeecCCCceEEEEEecCCC-cceee---ecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-
Confidence 4556454 56789999999999999998776 44433 468899999999999 999999999999999999887
Q ss_pred cceEEEecCCCCeEEEEEcCCCC---------EEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1258 DAYLTIDAHRGSLSALAVHRHAP---------IIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1258 ~~v~tl~~h~~~Vtsla~spdg~---------~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
.....+++|...|..+.|+|.|+ .+++++.|++|++|| ..|.++.++.. |. .+|.+++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~-------~pVysvafS~~ 463 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQ-------EPVYSVAFSPN 463 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CC-------CceEEEEecCC
Confidence 78899999999999999999754 789999999999999 67999999987 66 89999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000700 1328 QVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1328 g~~Lasgs~Dg~I~IWd 1344 (1344)
|++||+|+.||.|.||+
T Consensus 464 g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWS 480 (524)
T ss_pred CcEEEecCCCCeeEecc
Confidence 99999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=255.52 Aligned_cols=280 Identities=19% Similarity=0.314 Sum_probs=236.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~-~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|.+.|..+.|+|+|.+||+|+.|..|.+|+. ...+....+++|. +.|..+.| ..|++.++++|.|.+|+.||.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---GAVMELHG--MRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc---ceeEeeee--ccCCCEEEEecCCceEEEEec
Confidence 35678999999999999999999999999995 4456677788999 99999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
.+ ++.. +..++|...|++ ++-...+..++.+ ++||++++||+++.. +++++.... .++++ .+..
T Consensus 120 ~t--G~~~-----rk~k~h~~~vNs----~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~~ky--qltAv-~f~d 184 (338)
T KOG0265|consen 120 ET--GKRI-----RKHKGHTSFVNS----LDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFENKY--QLTAV-GFKD 184 (338)
T ss_pred cc--ceee-----ehhccccceeee----cCccccCCeEEEecCCCceEEEEeecccc-hhhccccce--eEEEE-Eecc
Confidence 77 4332 447888888877 4433445555554 689999999999988 888886543 38999 6677
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc---cceEEE
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTI 1263 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~---~~v~tl 1263 (1344)
.+..+.+|+-|+.|++||+|..+ ... ...||...|+.+..+++ |.++.+-+.|.++++||++-.. .++..+
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d-~~~---~lsGh~DtIt~lsls~~--gs~llsnsMd~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKND-GLY---TLSGHADTITGLSLSRY--GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccceeeccccCceeeeccccCc-ceE---EeecccCceeeEEeccC--CCccccccccceEEEEEecccCCCCceEEEe
Confidence 88999999999999999999887 443 34588899999999999 9999999999999999998532 457777
Q ss_pred ecCC----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000700 1264 DAHR----GSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1264 ~~h~----~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg 1338 (1344)
.+|. ......+|+|++..+.+|+.|+.+++||... ..+..+.+ |. +.|++++|||...+|.+++.|.
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG-h~-------gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG-HY-------GSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC-cc-------eeEEEeeecCCCcEEEEeccCc
Confidence 7763 3456789999999999999999999999665 67777777 65 8999999999999999999999
Q ss_pred eEEE
Q 000700 1339 CVSI 1342 (1344)
Q Consensus 1339 ~I~I 1342 (1344)
+|.+
T Consensus 331 ~i~l 334 (338)
T KOG0265|consen 331 TIYL 334 (338)
T ss_pred eeEe
Confidence 9875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=275.68 Aligned_cols=287 Identities=14% Similarity=0.262 Sum_probs=249.6
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-CeE
Q 000700 1024 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1102 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1102 (1344)
+.|-.+.+..+++.+||+.-+.||+|-..|...+|.+..-.+++.+.-.. .+|..+.| +..|+.|+.|+.. |.+
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---~~I~t~~~--N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---QKILTVSF--NSTGDWIAFGCSKLGQL 332 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc---ceeeEEEe--cccCCEEEEcCCccceE
Confidence 34555566889999999999999999999999999999999999998877 78999999 6789999998765 899
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
-||+... ....+ ..++|...+.+ ++++|||..+++|++||.|+|||..++- |..++..|... |+.+
T Consensus 333 lVweWqs--EsYVl-----KQQgH~~~i~~----l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~-Vt~v- 398 (893)
T KOG0291|consen 333 LVWEWQS--ESYVL-----KQQGHSDRITS----LAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSG-VTAV- 398 (893)
T ss_pred EEEEeec--cceee-----eccccccceee----EEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCc-eEEE-
Confidence 9999865 22222 36899999998 9999999999999999999999999999 99999999887 9999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEECCCCccceE
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-I~IWDlr~~~~~v~ 1261 (1344)
.+...|+.+++.+-||+||.||+.... ..+++... ......+++..|. |..++.|+.|.. |.+|++.++ +.+.
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P--~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTG-qllD 472 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSP--EPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTG-QLLD 472 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccc-eeeeecCC--CceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecC-eeee
Confidence 667899999999999999999998776 45555332 1345678999998 999999998864 999999998 8999
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g--~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
.+.+|+++|.+++|+|++..||+||.|.+|++||+-+ ....++.. . ..+.+++|+|+|+-||+++.||.
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~-------sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--R-------SDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--c-------cceeEEEEcCCCCeEEEEEecce
Confidence 9999999999999999999999999999999999533 35666654 2 56999999999999999999999
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
|.+||
T Consensus 544 Itf~d 548 (893)
T KOG0291|consen 544 ITFFD 548 (893)
T ss_pred EEEEE
Confidence 99996
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=260.31 Aligned_cols=284 Identities=19% Similarity=0.329 Sum_probs=246.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
|.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.+|- ..|..+++ ++-..|+.+++.|+.|+.||+..
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi---~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHI---ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchh---heeeeeee--cccCceEEEecCCCeeEEEechh
Confidence 55789999999999999999999999999999999999999999 89999999 67889999999999999999965
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
. +.+ +.+.||...|.+ ++.+|.-..|++||.|.+++|||+++.. .+..+.+|... |.++ .+++...
T Consensus 225 --n--kvI---R~YhGHlS~V~~----L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~-V~~V-~~~~~dp 290 (460)
T KOG0285|consen 225 --N--KVI---RHYHGHLSGVYC----LDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNP-VASV-MCQPTDP 290 (460)
T ss_pred --h--hhH---HHhccccceeEE----EeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCc-ceeE-EeecCCC
Confidence 2 223 668899999988 8889999999999999999999999999 99999999876 9999 6667777
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
.+++|+.|++|++||++.++.+.. ...|+..|.+++.+|. ...+++++.| .|+-|++..+ ..+..+.+|.+-
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~t----lt~hkksvral~lhP~--e~~fASas~d-nik~w~~p~g-~f~~nlsgh~~i 362 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMIT----LTHHKKSVRALCLHPK--ENLFASASPD-NIKQWKLPEG-EFLQNLSGHNAI 362 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEe----eecccceeeEEecCCc--hhhhhccCCc-cceeccCCcc-chhhccccccce
Confidence 899999999999999999985543 3467799999999999 8889999887 6999999988 778889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEE---eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTI---RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l---~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|.+++...|+ ++++|+.+|.+.+|| -+|...+.. .. ..+. .....|.+.+|...|..|++|..|.+|++|.
T Consensus 363 intl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-pGSl--~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 363 INTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-PGSL--ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccccc-CCcc--ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 9999999776 788899999999999 445443333 21 1111 1335799999999999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=275.84 Aligned_cols=288 Identities=18% Similarity=0.307 Sum_probs=247.3
Q ss_pred CCeEEEEEcCCCCEEEEEECC-CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1032 KGTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~d-g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
.+|..++|+..|++||.|+.. |.+-||+|++...+-..++|. ..++++++ ++||++++||++||.|+|||...
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~---~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~S- 381 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS---DRITSLAY--SPDGQLIATGAEDGKVKVWNTQS- 381 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc---cceeeEEE--CCCCcEEEeccCCCcEEEEeccC-
Confidence 679999999999999999854 899999999999999999999 89999999 89999999999999999999855
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~ 1190 (1344)
+ .|+.++..|+..|+. +.|+..+..+++++-||+|+.||+.+.. ..+++.........|+ ..++.|.+
T Consensus 382 -g-----fC~vTFteHts~Vt~----v~f~~~g~~llssSLDGtVRAwDlkRYr-NfRTft~P~p~Qfscv-avD~sGel 449 (893)
T KOG0291|consen 382 -G-----FCFVTFTEHTSGVTA----VQFTARGNVLLSSSLDGTVRAWDLKRYR-NFRTFTSPEPIQFSCV-AVDPSGEL 449 (893)
T ss_pred -c-----eEEEEeccCCCceEE----EEEEecCCEEEEeecCCeEEeeeecccc-eeeeecCCCceeeeEE-EEcCCCCE
Confidence 2 244679999999998 9999999999999999999999999999 8899888766667788 67788999
Q ss_pred EEEEECCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1191 LAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1191 L~sGs~DG-sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
+++|+.|. .|.+|++.+++ ... .+.||.++|.+++|+|. +..|++||.|.+|++||+-.....+.+++ +...
T Consensus 450 V~AG~~d~F~IfvWS~qTGq-llD---iLsGHEgPVs~l~f~~~--~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sd 522 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQ-LLD---ILSGHEGPVSGLSFSPD--GSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSD 522 (893)
T ss_pred EEeeccceEEEEEEEeecCe-eee---hhcCCCCcceeeEEccc--cCeEEeccccceEEEEEeeccCceeeeEe-eccc
Confidence 99999886 59999999998 443 45688899999999999 99999999999999999976545666666 5667
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCcc------------ccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSF------------MAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f------------~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
+..++|+|+|+-+|+++.||.|.+||. .+.++..+.+.++.. ........+.+++++||+.+++||.
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 999999999999999999999999994 455555554422110 0123467899999999999999999
Q ss_pred CCeEEEcC
Q 000700 1337 DACVSIHS 1344 (1344)
Q Consensus 1337 Dg~I~IWd 1344 (1344)
...|.||+
T Consensus 603 sn~iCiY~ 610 (893)
T KOG0291|consen 603 SNSICIYD 610 (893)
T ss_pred cccEEEEE
Confidence 99999985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=289.27 Aligned_cols=270 Identities=19% Similarity=0.318 Sum_probs=228.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
....++|..|++|+.+||.|-.|..|++|.+... .++.++... + ...+=+.+.|-.+.+.|...
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~----------~-----l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDAS----------D-----LSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchh----------h-----hccccccccchhhhhccccC
Confidence 3578999999999999999999999999998754 333333222 1 11222344444455555433
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
. ... +.+.+|.++|.+ +.|+|+.++|++++.|++||+|.+.+.. ++..+++|.. +|..+ .+.|.|-
T Consensus 441 --~-~~~----~~L~GH~GPVyg----~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~-PVwdV-~F~P~Gy 506 (707)
T KOG0263|consen 441 --S-GTS----RTLYGHSGPVYG----CSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLA-PVWDV-QFAPRGY 506 (707)
T ss_pred --C-cee----EEeecCCCceee----eeecccccceeeccCCcceeeeecccce-eEEEecCCCc-ceeeE-EecCCce
Confidence 1 111 347899999999 8999999999999999999999999999 9999997755 59999 5779999
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
+|++|+.|++.++|...... ..+ .+.+|.+.|.|+.|||+ ..++++||.|.+|++||+.++ ..++.|.+|.++
T Consensus 507 YFatas~D~tArLWs~d~~~-PlR---ifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNK-PLR---IFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGP 579 (707)
T ss_pred EEEecCCCceeeeeecccCC-chh---hhcccccccceEEECCc--ccccccCCCCceEEEEEcCCC-cEEEEecCCCCc
Confidence 99999999999999988755 333 45688899999999999 999999999999999999998 899999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|++++|+|+|++||+|+.||.|++||+ .|+.+..+++ |. +.|.++.|+.+|..||+||.|++|++||
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~-Ht-------~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG-HT-------GTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc-cc-------CceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999995 5688888888 76 8999999999999999999999999997
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=298.80 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=231.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----c----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----T----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg----~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
|...|.+++|+|+|++||+|+.|+.|+||+..+. . ....+.. . ..|.+++|. ..++.+|++++.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~---~~v~~l~~~-~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R---SKLSGICWN-SYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c---CceeeEEec-cCCCCEEEEEeCCCe
Confidence 5678999999999999999999999999997532 1 1122222 2 578999994 346789999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1180 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~-~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vts 1180 (1344)
|++||+.+ +. .+ ..+.+|...|.+ ++|++ ++..|++|+.||.|++||++++. ++..+..+ . .|.+
T Consensus 557 v~lWd~~~--~~--~~---~~~~~H~~~V~~----l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~-~v~~ 622 (793)
T PLN00181 557 VQVWDVAR--SQ--LV---TEMKEHEKRVWS----IDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-A-NICC 622 (793)
T ss_pred EEEEECCC--Ce--EE---EEecCCCCCEEE----EEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-C-CeEE
Confidence 99999865 22 22 346789988888 99986 56788899999999999999988 88887754 3 4888
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC----
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH---- 1256 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~---- 1256 (1344)
+.+.++++.+|++|+.||.|++||++........ ..+|...|.++.|. + +..|++|+.|++|++||++..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---~~~h~~~V~~v~f~-~--~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---MIGHSKTVSYVRFV-D--SSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---ecCCCCCEEEEEEe-C--CCEEEEEECCCEEEEEeCCCCcccc
Confidence 8666778999999999999999999976533333 34678999999997 5 789999999999999999843
Q ss_pred -ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCcc-----ccccCCCeEEEEEecCCC
Q 000700 1257 -KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSF-----MAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1257 -~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f-----~~~~~~~V~slafspdg~ 1329 (1344)
..++.++.+|...+.+++|++++.+|++|+.|+.|++|+.. ...+..+...+... ...+...|.+++|+|++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 25788899999999999999999999999999999999953 33333222101100 112346799999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000700 1330 LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~IWd 1344 (1344)
+|++|+.||.|+||+
T Consensus 777 ~lva~~~dG~I~i~~ 791 (793)
T PLN00181 777 TLVAANSTGNIKILE 791 (793)
T ss_pred eEEEecCCCcEEEEe
Confidence 999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=284.89 Aligned_cols=286 Identities=24% Similarity=0.382 Sum_probs=247.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
+...|.++.|+++|..+++++.++.+++|+..+++ .+..+.+|. ..|.+++| ++++.++++|+.|++|+|||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~---~~v~~~~f--s~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT---RGVSDVAF--SPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc---cceeeeEE--CCCCcEEEEecCCceEEEeec
Confidence 35689999999999999999999999999998777 777778888 89999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. .+... +++.+|...|.+ ++|++++..+++|+.|++|+|||+++++ ++..+.+|.+. |+++ .++++
T Consensus 233 ~~-~~~~~-----~~l~gH~~~v~~----~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-is~~-~f~~d 299 (456)
T KOG0266|consen 233 KD-DGRNL-----KTLKGHSTYVTS----VAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-ISGL-AFSPD 299 (456)
T ss_pred cC-CCeEE-----EEecCCCCceEE----EEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc-eEEE-EECCC
Confidence 33 12222 458899999988 9999999999999999999999999999 99999999886 9999 88999
Q ss_pred CCEEEEEECCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~-v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h 1266 (1344)
+++|++++.||.|++||+.++... ...+....... .++++.|+|+ +.++++++.|+.+++||++.+ ..+..+.+|
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~--~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~ 375 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPN--GKYLLSASLDRTLKLWDLRSG-KSVGTYTGH 375 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCC--CcEEEEecCCCeEEEEEccCC-cceeeeccc
Confidence 999999999999999999998742 23333333223 6999999999 999999999999999999998 788899988
Q ss_pred CCC---eEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE--CCCeE
Q 000700 1267 RGS---LSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS--ADACV 1340 (1344)
Q Consensus 1267 ~~~---Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs--~Dg~I 1340 (1344)
... +.+...++.+.++.+|+.|+.|++||.. +..+..+.+ |. ...+..++++|...++++++ .|+.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~-h~------~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG-HS------KAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC-CC------CCceeccccCCCcCeeeecCcCCCceE
Confidence 775 3444557789999999999999999965 777777777 62 37899999999999999998 69999
Q ss_pred EEcC
Q 000700 1341 SIHS 1344 (1344)
Q Consensus 1341 ~IWd 1344 (1344)
++|.
T Consensus 449 ~~w~ 452 (456)
T KOG0266|consen 449 RLWK 452 (456)
T ss_pred EEec
Confidence 9995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=244.69 Aligned_cols=248 Identities=17% Similarity=0.275 Sum_probs=217.8
Q ss_pred ccccccCCC----------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEeeCCCCCCCCeEEEEEEe
Q 000700 1023 IACWDTRFE----------KGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFDNHDFPDKGISKLCLVN 1086 (1344)
Q Consensus 1023 i~~Wd~~~~----------~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg------~~l~~~~~h~~~~~~ItsL~f~n 1086 (1344)
.-+||.-+. ..|..++|+|.|+++|.|+-|+...||++.+. +..+.+.+|. +.+.++.|.
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt---gylScC~f~- 154 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT---GYLSCCRFL- 154 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc---ceeEEEEEc-
Confidence 456776543 45889999999999999999999999999854 4556688999 999999994
Q ss_pred eCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec-CCCeEEEEECCCeEEEEECCCCce
Q 000700 1087 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQ 1165 (1344)
Q Consensus 1087 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~-~~~~Llagg~Dg~I~VWDl~~~~~ 1165 (1344)
+...|+|++.|.+..+||+++ +... +.+.+|.+.|.+ ++.+| +++.+++|+.|+..++||++.+.
T Consensus 155 --dD~~ilT~SGD~TCalWDie~--g~~~-----~~f~GH~gDV~s----lsl~p~~~ntFvSg~cD~~aklWD~R~~~- 220 (343)
T KOG0286|consen 155 --DDNHILTGSGDMTCALWDIET--GQQT-----QVFHGHTGDVMS----LSLSPSDGNTFVSGGCDKSAKLWDVRSGQ- 220 (343)
T ss_pred --CCCceEecCCCceEEEEEccc--ceEE-----EEecCCcccEEE----EecCCCCCCeEEecccccceeeeeccCcc-
Confidence 578999999999999999977 4333 347899999988 88888 78889999999999999999999
Q ss_pred eeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000700 1166 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1166 ~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D 1245 (1344)
+++++.+|... |.++ .+.|+|.-|++|+.|++.|+||+|... .+..+ .+..-..+|++++|+.. |++|++|..|
T Consensus 221 c~qtF~ghesD-INsv-~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~y-s~~~~~~gitSv~FS~S--GRlLfagy~d 294 (343)
T KOG0286|consen 221 CVQTFEGHESD-INSV-RFFPSGDAFATGSDDATCRLYDLRADQ-ELAVY-SHDSIICGITSVAFSKS--GRLLFAGYDD 294 (343)
T ss_pred eeEeecccccc-cceE-EEccCCCeeeecCCCceeEEEeecCCc-EEeee-ccCcccCCceeEEEccc--ccEEEeeecC
Confidence 99999999877 9999 555899999999999999999999987 44455 34445678999999999 9999999999
Q ss_pred CcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1246 GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1246 G~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
..+.+||.-.+ +.+..+.+|++.|+|+..+|||..+++||.|..++||.
T Consensus 295 ~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999987 88999999999999999999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=237.60 Aligned_cols=253 Identities=15% Similarity=0.266 Sum_probs=218.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
++|..+.+.|+++.||+|+ .-.|++||+.+++ .+.+|.+|. ..|+++.| +.+|..++|||+||++||||+..
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccC---CceEEEEE--eecCeEEEecCCCceEEEEeccC
Confidence 6799999999999999998 7789999999874 688999998 89999999 78999999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
. ..+ + .-.|..+|++ +..+|+...|+++..+|.|+|||+.... +...+....+..|.++ ...++|.
T Consensus 115 ~--~~q-----R-~~~~~spVn~----vvlhpnQteLis~dqsg~irvWDl~~~~-c~~~liPe~~~~i~sl-~v~~dgs 180 (311)
T KOG0315|consen 115 L--SCQ-----R-NYQHNSPVNT----VVLHPNQTELISGDQSGNIRVWDLGENS-CTHELIPEDDTSIQSL-TVMPDGS 180 (311)
T ss_pred c--ccc-----h-hccCCCCcce----EEecCCcceEEeecCCCcEEEEEccCCc-cccccCCCCCcceeeE-EEcCCCc
Confidence 1 111 2 2346688888 8889999999999999999999999988 7777666666679999 6778999
Q ss_pred EEEEEECCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~--~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
+++++...|..++|++-+... .......++.|.+.+..+.++|+ +++|+++|.|.+++||+..+.-+....+++|.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 999999999999999876442 22222345678899999999999 99999999999999999997645667888999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEec
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRY 1306 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~ 1306 (1344)
..++..+||.+|.+|+||+.|+.+++|++ .++.+....+
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 99999999999999999999999999995 5788888877
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=257.94 Aligned_cols=282 Identities=17% Similarity=0.257 Sum_probs=234.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
.|.+.|.-+.||++|++||+|+.|.+..||++... +..+++.+|. .+|..+.| +||.++|++++.|..+++|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~w--SPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMW--SPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc---CceEEEEE--CCCCCeEEecCchHheeec
Confidence 35678999999999999999999999999987644 4577888999 89999999 8999999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
|+.+ +..... + -.++...+.+ ++|.||+..+++|+.|+.|..||++... ...+.+-....|.++ ...
T Consensus 297 Dv~t--gd~~~~--y--~~~~~~S~~s----c~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl-ait 363 (519)
T KOG0293|consen 297 DVDT--GDLRHL--Y--PSGLGFSVSS----CAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL-AIT 363 (519)
T ss_pred cCCc--chhhhh--c--ccCcCCCcce----eEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE-EEc
Confidence 9977 332211 0 1233455555 8999999999999999999999998765 666776666679999 778
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
+||+++++.+.|..|++|+..+.. ....... ..+|++..++.+ ++++++.-.+..|++||+... ..+..+.+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise----~~~its~~iS~d--~k~~LvnL~~qei~LWDl~e~-~lv~kY~G 435 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARV-DRGLISE----EQPITSFSISKD--GKLALVNLQDQEIHLWDLEEN-KLVRKYFG 435 (519)
T ss_pred CCCcEEEEEecccceeeechhhhh-hhccccc----cCceeEEEEcCC--CcEEEEEcccCeeEEeecchh-hHHHHhhc
Confidence 899999999999999999988665 2222222 268999999998 999999999999999999976 78888888
Q ss_pred CCCCe--EEEEEcC-CCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeE
Q 000700 1266 HRGSL--SALAVHR-HAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1340 (1344)
Q Consensus 1266 h~~~V--tsla~sp-dg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I 1340 (1344)
|+..- -.-+|-. +..++|+||+|+.|+||+ .+|+.+..+.+ |. ..|++++|+|.. .++|+||.||+|
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs-------~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HS-------KTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-Cc-------ceeeEEecCCCCHHHhhccCCCCeE
Confidence 86542 2223433 447999999999999999 78999999999 76 899999999987 689999999999
Q ss_pred EEcC
Q 000700 1341 SIHS 1344 (1344)
Q Consensus 1341 ~IWd 1344 (1344)
+||.
T Consensus 508 RIWg 511 (519)
T KOG0293|consen 508 RIWG 511 (519)
T ss_pred EEec
Confidence 9995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=274.12 Aligned_cols=298 Identities=24% Similarity=0.367 Sum_probs=229.8
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeE
Q 000700 1023 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1023 i~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1102 (1344)
+..|...|..++..++|+|.+..|++|+.||.|+|||+..+.+...|++|. +.|.++.|.+.....+|++|+.|+++
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~g---GvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHG---GVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCC---ceEEEEEeCCccchhheeecCCCceE
Confidence 466888889999999999999999999999999999999999999999999 99999999665666789999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC------------------------------
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------------------------------ 1152 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D------------------------------ 1152 (1344)
++||+... .. +...+..|.+.|++ +++.+++..++++|.|
T Consensus 174 ~vwnl~~~--~t----cl~~~~~H~S~vts----L~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~ 243 (775)
T KOG0319|consen 174 RVWNLNDK--RT----CLHTMILHKSAVTS----LAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLR 243 (775)
T ss_pred EEEEcccC--ch----HHHHHHhhhhheee----eeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEec
Confidence 99999751 11 22445666666666 4444444444444444
Q ss_pred ----------------CeEEEEECCCCc----------------------------------------------------
Q 000700 1153 ----------------SSIMLWDLEKEQ---------------------------------------------------- 1164 (1344)
Q Consensus 1153 ----------------g~I~VWDl~~~~---------------------------------------------------- 1164 (1344)
|.+++||.++++
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n 323 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN 323 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc
Confidence 444444433222
Q ss_pred ----------------------ee----------eeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeee
Q 000700 1165 ----------------------QM----------VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLV 1212 (1344)
Q Consensus 1165 ----------------------~~----------v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v 1212 (1344)
.. .+.+.+|.+. |.++..+ ..|.+|++|+.|.++++|.+..+....
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~-vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA-VLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh-eeeeeec-ccCcEEEEecCCceEEEEEecCCcchh
Confidence 00 0012233333 5555322 356799999999999999885544333
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc--c--ce----EEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1213 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--D--AY----LTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1213 ~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~--~--~v----~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
.......+|.+.|.+++++.. +..+|+++|.|+++++|++.... . .+ .+...|+..|++++++|+..++||
T Consensus 402 ~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeeccc-CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 334455689999999999876 67899999999999999998621 1 11 234579999999999999999999
Q ss_pred EeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1285 GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1285 gS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
||.|++.+||++. ...+.++.+ |. ..|+++.|+|..+.|||+|.|++|+||+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsG-H~-------RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSG-HT-------RGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred cccccceeeecccCceEEEEeeC-Cc-------cceEEEEeccccceeEeccCCceEEEEE
Confidence 9999999999965 567778888 66 8999999999999999999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=238.62 Aligned_cols=287 Identities=18% Similarity=0.325 Sum_probs=231.4
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCC---cEEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEE
Q 000700 1029 RFEKGTKTALLQPF-SPIVVAADENERIKIWNYEED---TLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1029 ~~~~~I~~l~fspd-g~~Latgs~dg~I~VWd~~tg---~~l~~~-~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1103 (1344)
.|..++..++|||- |..||+++.|..|+||+...+ .+...+ .+|. ..|.+++| +|.|++|++|+.|.++.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk---rsVRsvAw--sp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK---RSVRSVAW--SPHGRYLASASFDATVV 86 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch---heeeeeee--cCCCcEEEEeeccceEE
Confidence 34568999999998 889999999999999998853 333333 3566 89999999 78999999999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeeEE
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISAL 1181 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~--~~v~~i~~~~~~~VtsL 1181 (1344)
||.-.. +..+.+ .++.||...|.+ ++|+.+|++|++++.|+.|-||.+..+. .+...+..|... |..+
T Consensus 87 Iw~k~~--~efecv---~~lEGHEnEVK~----Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-VK~V 156 (312)
T KOG0645|consen 87 IWKKED--GEFECV---ATLEGHENEVKC----VAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-VKHV 156 (312)
T ss_pred EeecCC--CceeEE---eeeeccccceeE----EEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-ccEE
Confidence 999765 555555 678999999999 9999999999999999999999988432 377888888887 8888
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1182 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
.++|...+|++++.|.+|++|+-.... -......+.+|.+.|.+++|++. |..|++++.|++|+||-....
T Consensus 157 -~WHPt~dlL~S~SYDnTIk~~~~~~dd-dW~c~~tl~g~~~TVW~~~F~~~--G~rl~s~sdD~tv~Iw~~~~~----- 227 (312)
T KOG0645|consen 157 -IWHPTEDLLFSCSYDNTIKVYRDEDDD-DWECVQTLDGHENTVWSLAFDNI--GSRLVSCSDDGTVSIWRLYTD----- 227 (312)
T ss_pred -EEcCCcceeEEeccCCeEEEEeecCCC-CeeEEEEecCccceEEEEEecCC--CceEEEecCCcceEeeeeccC-----
Confidence 778889999999999999999877433 22222356678899999999999 999999999999999986643
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc---eEEEEeccCCccccccCCCeEEEEEecC-CCEEEEEECC
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVLLAAGSAD 1337 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~---~l~~l~~~h~~f~~~~~~~V~slafspd-g~~Lasgs~D 1337 (1344)
.-..|...+..+.|. ...||+++.|+.|++|..... ....+.. ...+.|...|++++|.|. ...|++|+.|
T Consensus 228 ~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~---~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLA---KKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHH---hhhcccccccceEEEcCCCCCceeecCCC
Confidence 112367889999998 568999999999999984321 1111100 011235579999999995 6899999999
Q ss_pred CeEEEcC
Q 000700 1338 ACVSIHS 1344 (1344)
Q Consensus 1338 g~I~IWd 1344 (1344)
|.|++|.
T Consensus 303 G~v~~W~ 309 (312)
T KOG0645|consen 303 GIVNFWE 309 (312)
T ss_pred ceEEEEE
Confidence 9999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=242.44 Aligned_cols=254 Identities=21% Similarity=0.304 Sum_probs=216.3
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC
Q 000700 1064 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1064 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~ 1143 (1344)
....++++|. +.|+.++... .+.+.+++++.|.++.+|++... ..+.-...+.+.||...|.. +..++++
T Consensus 6 ~l~~tl~gh~---d~Vt~la~~~-~~~~~l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~d----v~~s~dg 75 (315)
T KOG0279|consen 6 VLRGTLEGHT---DWVTALAIKI-KNSDILVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSD----VVLSSDG 75 (315)
T ss_pred eeeeeecCCC---ceEEEEEeec-CCCceEEEcccceEEEEEEeccC--ccccCceeeeeeccceEecc----eEEccCC
Confidence 3456788999 9999999843 46789999999999999999763 22222233668999999999 7888999
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000700 1144 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1223 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~ 1223 (1344)
.+.++++.|+++++||+.+++ ..+.+.+|... |.++ .++++...+++|+.|.+|++|+..... ..... . ..|.+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~-~t~~f~GH~~d-Vlsv-a~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~-~-~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGE-STRRFVGHTKD-VLSV-AFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIH-E-DSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCc-EEEEEEecCCc-eEEE-EecCCCceeecCCCcceeeeeeecccE-EEEEe-c-CCCcC
Confidence 999999999999999999998 89999999887 9999 788999999999999999999998765 33222 2 23479
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEE
Q 000700 1224 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLG 1302 (1344)
Q Consensus 1224 ~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~ 1302 (1344)
+|.++.|+|.....+|++++.|++|++||+++. +...++.+|.+.++.++++|||.++++|+.||.+.+||+ +++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE
Confidence 999999999844789999999999999999988 788899999999999999999999999999999999995 567766
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.. ...|.+++|+|+.-.|+.+. +..|+|||
T Consensus 229 sl~a---------~~~v~sl~fspnrywL~~at-~~sIkIwd 260 (315)
T KOG0279|consen 229 SLEA---------FDIVNSLCFSPNRYWLCAAT-ATSIKIWD 260 (315)
T ss_pred eccC---------CCeEeeEEecCCceeEeecc-CCceEEEe
Confidence 6653 37899999999988887775 55699996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=272.96 Aligned_cols=281 Identities=19% Similarity=0.320 Sum_probs=243.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
..++..++|||..++++++-..|.|++||+.-+.++..|..|. ++|..++| ++.+.++++||+|-.|+||+...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd---GpVRgv~F--H~~qplFVSGGDDykIkVWnYk~- 82 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDF--HPTQPLFVSGGDDYKIKVWNYKT- 82 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC---Cccceeee--cCCCCeEEecCCccEEEEEeccc-
Confidence 4679999999999999999999999999999999999999999 99999999 78999999999999999999865
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~ 1190 (1344)
.+ +..++.||..-|+. +.|++.-..++++++|.+|+||+..+.+ ++..+.+|... |.|- .+.|..++
T Consensus 83 -rr-----clftL~GHlDYVRt----~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHY-VMcA-qFhptEDl 149 (1202)
T KOG0292|consen 83 -RR-----CLFTLLGHLDYVRT----VFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHY-VMCA-QFHPTEDL 149 (1202)
T ss_pred -ce-----ehhhhccccceeEE----eeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceE-EEee-ccCCccce
Confidence 22 22568999999998 9999999999999999999999999999 99999999776 9998 67788999
Q ss_pred EEEEECCCeEEEEECCCCCe-------------------------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000700 1191 LAAGFVDGSVRLYDVRTPDM-------------------------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1191 L~sGs~DGsVrIwDlr~~~~-------------------------~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D 1245 (1344)
+++++-|.+||+||+..-+. -........||...|+.++|+|. -..|++|+.|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DD 227 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADD 227 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--cceEEecCCc
Confidence 99999999999999853110 00111245689999999999998 8999999999
Q ss_pred CcEEEEECCCCc-cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEE
Q 000700 1246 GDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLT 1323 (1344)
Q Consensus 1246 G~I~IWDlr~~~-~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~sla 1323 (1344)
..|++|.+...+ -.+.+.++|.+.|+++-|||+..++.+.|+|++|+|||++ ...+.+++- . .+..+.++
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr-e-------ndRFW~la 299 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR-E-------NDRFWILA 299 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec-c-------CCeEEEEE
Confidence 999999998542 2456778999999999999999999999999999999965 456777764 2 26899999
Q ss_pred EecCCCEEEEEECCCeE
Q 000700 1324 FHPYQVLLAAGSADACV 1340 (1344)
Q Consensus 1324 fspdg~~Lasgs~Dg~I 1340 (1344)
-||..+++|+|...|.+
T Consensus 300 ahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 300 AHPELNLFAAGHDSGMI 316 (1202)
T ss_pred ecCCcceeeeecCCceE
Confidence 99999999988765544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=266.23 Aligned_cols=288 Identities=16% Similarity=0.256 Sum_probs=238.3
Q ss_pred ccccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC
Q 000700 1023 IACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100 (1344)
Q Consensus 1023 i~~Wd~~~~~~I~~l~fsp-dg~~Latgs~dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1100 (1344)
+..|. .|..+|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|. .+|.+++| +.+|..++++|.|+
T Consensus 207 ~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~--s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 207 SHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASF--NNCGTSFLSASFDR 280 (503)
T ss_pred eeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhc--cccCCeeeeeecce
Confidence 44553 4678999999999 888999999999999999865 89999999999 99999999 78999999999999
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee
Q 000700 1101 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1179 (1344)
Q Consensus 1101 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt 1179 (1344)
.|++||.++ |.... ..+...+.. ++.|+|++ +.+++|+.|+.|+.||+++++ .++.+..|-+. |.
T Consensus 281 ~lKlwDtET--G~~~~-------~f~~~~~~~---cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~-i~ 346 (503)
T KOG0282|consen 281 FLKLWDTET--GQVLS-------RFHLDKVPT---CVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGA-IL 346 (503)
T ss_pred eeeeecccc--ceEEE-------EEecCCCce---eeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhh-ee
Confidence 999999987 44322 223333322 49999998 677888899999999999999 88888887766 99
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc--
Q 000700 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1257 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-- 1257 (1344)
.+.+ -++|..+++.+.|++++||+.+.+-........ +.-.+.++..+|. +.+++.-+.|..|.+|.+....
T Consensus 347 ~i~F-~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---~~hsmP~~~~~P~--~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 347 DITF-VDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---EMHTMPCLTLHPN--GKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eeEE-ccCCceEeeeccCccEEEEEcCCCccchhhcch---hhccCcceecCCC--CCeehhhccCceEEEEeccccccc
Confidence 9954 578999999999999999999987633322211 2245678899999 9999999999999999876431
Q ss_pred cceEEEecCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCC-CEEEE
Q 000700 1258 DAYLTIDAHR--GSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAA 1333 (1344)
Q Consensus 1258 ~~v~tl~~h~--~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Las 1333 (1344)
...+.+++|. +.-..+.|||||.+|++|+.||.+.+|| -+.+.+..++. |+ +++..+.|||.. ..+||
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-h~-------~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-HD-------QPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-CC-------cceEEEEecCCCcceeEe
Confidence 3345677774 4567789999999999999999999999 45677788888 66 899999999987 68999
Q ss_pred EECCCeEEEcC
Q 000700 1334 GSADACVSIHS 1344 (1344)
Q Consensus 1334 gs~Dg~I~IWd 1344 (1344)
++.||.|++|+
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=262.97 Aligned_cols=242 Identities=21% Similarity=0.370 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|.+.|+++.|+++|.++++|+.+|.|++|+.. -..++.++.|. ...|++++| +++...++++++||+|+|||..
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh--~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHH--AEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhh--hhhhheecc--CCCCceeEEecCCCeEEEEecc
Confidence 467899999999999999999999999999876 34445555544 168999999 7899999999999999999987
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
. .+.+.+ +.+|.-.|++ ++|+|..+.++++|.|..|++||.+++. |+.++..|... |..+ .+++++
T Consensus 211 ~--~kee~v-----L~GHgwdVks----vdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKnt-Vl~~-~f~~n~ 276 (464)
T KOG0284|consen 211 M--PKEERV-----LRGHGWDVKS----VDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNT-VLAV-KFNPNG 276 (464)
T ss_pred C--Cchhhe-----eccCCCCcce----eccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccce-EEEE-EEcCCC
Confidence 6 333433 7899999999 9999999999999999999999999999 99999999887 9999 778899
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEE-ecCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1267 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl-~~h~ 1267 (1344)
++|++++.|..+++||+|+.+. +. ..++|+..|+++.|+|- ...+|.+|+.||.|..|.+... +++..+ .+|.
T Consensus 277 N~Llt~skD~~~kv~DiR~mkE-l~---~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd 350 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKE-LF---TYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHD 350 (464)
T ss_pred CeeEEccCCceEEEEehhHhHH-HH---Hhhcchhhheeeccccc-cccceeeccCCCceEEEecccc-ccccCCCcccc
Confidence 9999999999999999996652 22 45578899999999998 7889999999999999999855 455444 4799
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
+.|++++|||-|.+||+|+.|.++++|.
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999999999999999999998
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=243.78 Aligned_cols=285 Identities=14% Similarity=0.239 Sum_probs=232.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.+|...+.+++.+|+.++++||+.|..-.+|+..+|+....+.+|. ..|+++.| +.+|.+|+||+.+|.|+||+.
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHK---DSVt~~~F--shdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHK---DSVTCCSF--SHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCC---CceEEEEE--ccCceEEEecCCCccEEEEEc
Confidence 4577899999999999999999999999999999999999999999 99999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.+ +..+.. +......+.- +.|+|.+..|++|+.||.+-+|.+.++. ..+.+.+|... +++= .+.|+
T Consensus 136 st--g~~~~~-----~~~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~-ct~G-~f~pd 201 (399)
T KOG0296|consen 136 ST--GGEQWK-----LDQEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSP-CTCG-EFIPD 201 (399)
T ss_pred cc--CceEEE-----eecccCceEE----EEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCC-cccc-cccCC
Confidence 77 332221 2222223333 8999999999999999999999999977 78888887665 7776 56678
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCC-----------------C------------------------------C
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----------------T------------------------------Q 1220 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~-----------------~------------------------------~ 1220 (1344)
|+.+++|..||+|++||..++....+.-..- . +
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 9999999999999999999887433222000 0 0
Q ss_pred CCCCeEE---EEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-C
Q 000700 1221 QVERVVG---ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-L 1296 (1344)
Q Consensus 1221 h~~~I~s---va~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~ 1296 (1344)
+...+.+ +.++.. -.+.|+|+.||+|.|||+... .++.+-.|...|+.+.|-+ ..+|++++.||.|+.|| .
T Consensus 282 ~e~~~esve~~~~ss~--lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 282 QEELDESVESIPSSSK--LPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred chhhhhhhhhcccccc--cchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence 0111112 222222 456789999999999999976 4555556899999999998 78999999999999999 7
Q ss_pred CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1297 EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1297 ~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+|..+.++.+ |. ..|.+++++|++++++|+|.|++.+||+
T Consensus 357 tG~l~~~y~G-H~-------~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 357 TGQLKFTYTG-HQ-------MGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ccceEEEEec-Cc-------hheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 8999999998 76 8999999999999999999999999984
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=248.53 Aligned_cols=289 Identities=19% Similarity=0.303 Sum_probs=232.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee---CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD---NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~---~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1106 (1344)
|..-|.|+.|+|||.++++++.||+|.+||-++|+.+..+. +|. +.|.++.| +||+..++|++.|.+++|||
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk---GsIfalsW--sPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK---GSIFALSW--SPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc---ccEEEEEE--CCCCceEEEecCCceEEEEE
Confidence 44579999999999999999999999999999999999998 677 99999999 89999999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
+.+. .++..| .-. ..+...-+-+-|. +..|++.+-+|.|.+++..... ....+.+|... |+++ ..++
T Consensus 264 Vs~~----slv~t~---~~~-~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~-ITaL-tv~~ 330 (603)
T KOG0318|consen 264 VSTN----SLVSTW---PMG-STVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKS-ITAL-TVSP 330 (603)
T ss_pred eecc----ceEEEe---ecC-CchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccccc-eeEE-EEcC
Confidence 9773 333222 111 1133333336786 7899999999999999999999 89999999887 9999 6788
Q ss_pred CCCEEEEEECCCeEEEEECCCCCee----------eEeecCC------------------------CCC-----------
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDML----------VCSTRPH------------------------TQQ----------- 1221 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~----------v~~~~~~------------------------~~h----------- 1221 (1344)
++.+|++|+.||.|.-||..++... +..+... ..+
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence 9999999999999999998654311 0000000 000
Q ss_pred --------------------------------CCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEecCCC
Q 000700 1222 --------------------------------VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRG 1268 (1344)
Q Consensus 1222 --------------------------------~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h~~ 1268 (1344)
.-...+++++|+ +..++.|+.||.|+||.+.... ........|.+
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~--~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a 488 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD--GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA 488 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC--CCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence 012347888898 9999999999999999999753 33445667999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+|++++++|++.+||+|...+.|.+||...+....-. ..-|...|.+++|+|+..++|||+-|-.|.||+
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceecce------eeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999999999997655442211 122448999999999999999999999999995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=230.48 Aligned_cols=277 Identities=17% Similarity=0.277 Sum_probs=234.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.++..|.++.|+-||+|.++++.|.+|++||...|.+++++.+|. ..|.+++. +.|...+++|+.|..|.+||+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG---~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG---HEVLDAAL--SSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCC---ceeeeccc--cccccccccCCCCceEEEEEcc
Confidence 356789999999999999999999999999999999999999999 89999998 6789999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
+ ++.. +.+.+|...|+. +.|+.+...+++|+.|.++++||.++.. .+++.+....+. |.++. -.
T Consensus 90 T--Gkv~-----Rr~rgH~aqVNt----V~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-V~Si~---v~ 154 (307)
T KOG0316|consen 90 T--GKVD-----RRFRGHLAQVNT----VRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-VSSID---VA 154 (307)
T ss_pred c--Ceee-----eecccccceeeE----EEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc-eeEEE---ec
Confidence 7 5443 458999999998 9999999999999999999999988643 267777777666 88883 35
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
+..+++|+.||++|.||+|.+.....-+ ..+|+++.|+++ ++..+.++.|+++++.|-.++ +.+..+++|.
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~------g~pit~vs~s~d--~nc~La~~l~stlrLlDk~tG-klL~sYkGhk 225 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYF------GHPITSVSFSKD--GNCSLASSLDSTLRLLDKETG-KLLKSYKGHK 225 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhc------CCcceeEEecCC--CCEEEEeeccceeeecccchh-HHHHHhcccc
Confidence 7899999999999999999988332211 368999999999 999999999999999999998 8999999997
Q ss_pred CCeEE--EEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCC-eEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1268 GSLSA--LAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS-VNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1268 ~~Vts--la~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~-V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
..-.. .++......+++||+||.|.+|| .++..+..+.. +. .. |.++++||...-|+++.. +.+..|
T Consensus 226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~-------~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VS-------TVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CC-------ceeEEeeecccCccceeEecC-Cceece
Confidence 75443 34666677999999999999999 57777777776 54 44 899999999877777753 444444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-27 Score=252.55 Aligned_cols=275 Identities=17% Similarity=0.282 Sum_probs=223.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
..+|.|+.+ |+..+++|..|.+|+|||.++..++..+.+|. +.|.|+.| +...+++|+.|.+|+|||..+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy----d~rviisGSSDsTvrvWDv~t- 266 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT---GSVLCLQY----DERVIVSGSSDSTVRVWDVNT- 266 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCC---CcEEeeec----cceEEEecCCCceEEEEeccC-
Confidence 468999987 56689999999999999999999999999999 99999999 667999999999999999977
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~--~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
++.. +++-+|...|-. +.|+ ++++++++.|.+|.|||+.... .+...+.+|... |..+.+ +.
T Consensus 267 -ge~l-----~tlihHceaVLh----lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa-VNvVdf---d~ 330 (499)
T KOG0281|consen 267 -GEPL-----NTLIHHCEAVLH----LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-VNVVDF---DD 330 (499)
T ss_pred -Cchh-----hHHhhhcceeEE----EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh-eeeecc---cc
Confidence 4332 457788888877 6664 8999999999999999998654 134456677665 888833 46
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
+++++++.|.+|++|++.+.+ .+++ ..+|...|-|+.+. ++++++|+.|.+|++||+..+ .++..+++|+.
T Consensus 331 kyIVsASgDRTikvW~~st~e-fvRt---l~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEe 401 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-FVRT---LNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE 401 (499)
T ss_pred ceEEEecCCceEEEEecccee-eehh---hhcccccceehhcc----CeEEEecCCCceEEEEecccc-HHHHHHhchHH
Confidence 799999999999999999988 5554 44777999888773 889999999999999999998 89999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEecc-CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYH-HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~-h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
-|.++.|. .+.+++|+.||+|+|||+. +......... --.....|.+.|..+.| |...+++++.|.+|-|||
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 99999995 5789999999999999953 2211000000 00002245589999999 556788889999999997
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=246.89 Aligned_cols=244 Identities=23% Similarity=0.388 Sum_probs=216.7
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
..+.+++|. +.|.++++ +|...++++|+.|++|+|||+.+ +..++. +.||...|+. +++++...
T Consensus 143 l~rVi~gHl---gWVr~vav--dP~n~wf~tgs~DrtikIwDlat--g~Lklt-----ltGhi~~vr~----vavS~rHp 206 (460)
T KOG0285|consen 143 LYRVISGHL---GWVRSVAV--DPGNEWFATGSADRTIKIWDLAT--GQLKLT-----LTGHIETVRG----VAVSKRHP 206 (460)
T ss_pred ehhhhhhcc---ceEEEEee--CCCceeEEecCCCceeEEEEccc--CeEEEe-----ecchhheeee----eeecccCc
Confidence 345678898 99999999 78899999999999999999987 655544 8999999999 89999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1145 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
++++++.|+.|+.||++..+ .++.+.+|-.+ |.|+ ...|.-+.|++|+.|.++|+||+|+.. .+.. +.||...
T Consensus 207 YlFs~gedk~VKCwDLe~nk-vIR~YhGHlS~-V~~L-~lhPTldvl~t~grDst~RvWDiRtr~-~V~~---l~GH~~~ 279 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNK-VIRHYHGHLSG-VYCL-DLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHV---LSGHTNP 279 (460)
T ss_pred eEEEecCCCeeEEEechhhh-hHHHhccccce-eEEE-eccccceeEEecCCcceEEEeeecccc-eEEE---ecCCCCc
Confidence 99999999999999999999 89999998777 9999 667788999999999999999999988 4443 4578899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEE
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGT 1303 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~ 1303 (1344)
|.++.+.|. ...+++||.|++|++||++.+ +...++..|+..|.+++.||....+|+++.| .|+-|+ -.|..+..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 999999998 888999999999999999998 7888999999999999999999999999887 589999 46777777
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.+ |. .-|++++...|+ ++++|+..|.+.+||
T Consensus 356 lsg-h~-------~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 LSG-HN-------AIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ccc-cc-------ceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 777 55 789999988776 677888999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-26 Score=245.05 Aligned_cols=281 Identities=17% Similarity=0.330 Sum_probs=244.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee--------CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEE
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD--------NHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~--------~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1103 (1344)
+.+.|..|+|||++|++|+.||-|.|||+.+|+..+.++ .+. ..|.|+.| +.|..+|++|+.||.|+
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd---~aVlci~F--SRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD---DAVLCISF--SRDSEMLASGSQDGKIK 288 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc---cceEEEee--cccHHHhhccCcCCcEE
Confidence 568899999999999999999999999999997665443 344 78999999 78999999999999999
Q ss_pred EEeccCCCCceeEEeeeecc-cCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1104 IWKDYDQKDKQKLVTAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l-~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
||++.+ |.+ .+.+ ..|...|++ +.|+.++..+++++.|.++++.-+.+++ ++..+++|+.. |+..
T Consensus 289 vWri~t--G~C-----lRrFdrAHtkGvt~----l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSy-vn~a- 354 (508)
T KOG0275|consen 289 VWRIET--GQC-----LRRFDRAHTKGVTC----LSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSY-VNEA- 354 (508)
T ss_pred EEEEec--chH-----HHHhhhhhccCeeE----EEEccCcchhhcccccceEEEeccccch-hHHHhcCcccc-ccce-
Confidence 999977 332 1233 478888888 9999999999999999999999999999 99999999876 8888
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEE
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~t 1262 (1344)
.+.++|+.+++++.||+|++|+..+.+ +..+++.. +....|.++..-|. +...++++...++|.|.++. ++.+++
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~-~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~q--GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPL-GTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNMQ--GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchh-hhhhccCC-CCcccceeEEEcCC-CCceEEEEcCCCeEEEEecc--ceEEee
Confidence 678899999999999999999999988 66666554 45678999999998 78899999999999999998 468888
Q ss_pred EecC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000700 1263 IDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1263 l~~h---~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg 1338 (1344)
+... .+...+...+|.|.++.+.+.|+.++.|. .+|+.-.++.. |. ..|..++-||+.+.||+-+.||
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hE-------kdvIGl~HHPHqNllAsYsEDg 501 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HE-------KDVIGLTHHPHQNLLASYSEDG 501 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cc-------ccccccccCcccchhhhhcccc
Confidence 7643 45677888999999999999999999999 67888788877 66 6788999999999999999999
Q ss_pred eEEEcC
Q 000700 1339 CVSIHS 1344 (1344)
Q Consensus 1339 ~I~IWd 1344 (1344)
.+++|.
T Consensus 502 llKLWk 507 (508)
T KOG0275|consen 502 LLKLWK 507 (508)
T ss_pred hhhhcC
Confidence 999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=259.11 Aligned_cols=284 Identities=17% Similarity=0.264 Sum_probs=238.0
Q ss_pred CCCeEEEEE-cCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALL-QPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~f-spdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
.+.|..|+| .|++++|++++..+.+++|+..+..+. .+.+|. ..|.++.. ..+|.+|+||+.|.++++|++..
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~---e~vlSL~~--~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT---EAVLSLDV--WSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch---hheeeeee--cccCcEEEEecCCceEEEEEecC
Confidence 367888886 678899999999999999988866655 789999 89999984 25678999999999999999944
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCc--e--eee----eecCCCCCCeeE
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQ--Q--MVN----PIPSSSDCSISA 1180 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~--~--~v~----~i~~~~~~~Vts 1180 (1344)
+..+ ..+.....+|...|.+ ++++..+. .+++++.|+++++|++...+ . .+. +...| +..|++
T Consensus 397 ~~~~---~~~~a~~~gH~~svga----va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH-dKdIN~ 468 (775)
T KOG0319|consen 397 NCSK---SLCVAQANGHTNSVGA----VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH-DKDINC 468 (775)
T ss_pred Ccch---hhhhhhhcccccccce----eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh-cccccc
Confidence 2222 2334667899999988 56655544 56666899999999998722 0 111 12234 445999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
+ ...++..++++|+.|.+.++|++.... ... .+.||+..|.+|.|++. .+.++|+|.|++|+||.+.+. .++
T Consensus 469 V-aia~ndkLiAT~SqDktaKiW~le~~~-l~~---vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKIW~is~f-SCl 540 (775)
T KOG0319|consen 469 V-AIAPNDKLIATGSQDKTAKIWDLEQLR-LLG---VLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKIWSISTF-SCL 540 (775)
T ss_pred e-EecCCCceEEecccccceeeecccCce-EEE---EeeCCccceEEEEeccc--cceeEeccCCceEEEEEeccc-eee
Confidence 9 788999999999999999999999554 443 45588899999999998 999999999999999999998 899
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1261 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1261 ~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
+++.+|...|..+.|-.++..|++++.||.|++|++ +++++.++.. |. ..|++++-++...+++||+.||.
T Consensus 541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~-H~-------DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA-HN-------DRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh-cc-------ceeEEEeecCccceeEecCCCeE
Confidence 999999999999999999999999999999999994 6788888888 76 89999999999999999999999
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
|.+|.
T Consensus 613 i~~wk 617 (775)
T KOG0319|consen 613 IIFWK 617 (775)
T ss_pred EEEee
Confidence 99994
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=232.28 Aligned_cols=284 Identities=19% Similarity=0.303 Sum_probs=227.6
Q ss_pred eEEEEEcCCCC-EEEEEE-------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1034 TKTALLQPFSP-IVVAAD-------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1034 I~~l~fspdg~-~Latgs-------~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
=.++.|||... +||++. ..|.+.|-+...++.+..+..... ...+.+++|. +...+.+++++.||.+++|
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~-~D~LfdV~Ws-e~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT-EDGLFDVAWS-ENHENQVIAASGDGSLRLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec-ccceeEeeec-CCCcceEEEEecCceEEEe
Confidence 46788999654 555542 478999999875554444432221 1589999995 3466789999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
|.... .. +++.+++|..+|.+ ++|++..+ .+++++.|++|++||....+ .++++.+|... |....+.
T Consensus 89 d~~~~-s~-----Pi~~~kEH~~EV~S----vdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~-Iy~a~~s 156 (311)
T KOG0277|consen 89 DLTMP-SK-----PIHKFKEHKREVYS----VDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSC-IYQAAFS 156 (311)
T ss_pred ccCCC-Cc-----chhHHHhhhhheEE----eccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccE-EEEEecC
Confidence 96442 11 23568999999998 89988655 45666899999999999998 89999997665 9988677
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
+..+++|++++.||.+++||+|...+... + ..|...|.++.|+.. +...++||+.|+.|+.||+|+.+.++..+.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i---~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~ 231 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMS-I---EAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELN 231 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeE-E---EeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeec
Confidence 77899999999999999999997653332 3 356689999999987 788999999999999999999989999999
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCC-C-ceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeE
Q 000700 1265 AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLE-G-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACV 1340 (1344)
Q Consensus 1265 ~h~~~Vtsla~spdg-~~LasgS~Dg~I~Iwd~~-g-~~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I 1340 (1344)
+|.-.|+.+.|+|+. .+||+++.|-+++|||.. + ..+.+..- |+ .-|..+.|++.. .++|+++.|+.+
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-Ht-------EFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HT-------EFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cc-------eEEeccccccccCceeeecccccce
Confidence 999999999999975 489999999999999943 3 33444443 65 668889998764 789999999999
Q ss_pred EEcC
Q 000700 1341 SIHS 1344 (1344)
Q Consensus 1341 ~IWd 1344 (1344)
+||+
T Consensus 304 ~Vw~ 307 (311)
T KOG0277|consen 304 YVWN 307 (311)
T ss_pred eeec
Confidence 9996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=238.81 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=232.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|.+.|.++... ++++++|+.||.++|||.+ |+....+.+|. ++|.+++|.... ....+++++.|.++++|..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 355678888877 7899999999999999987 99999999999 999999986432 2347999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-----------------------
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----------------------- 1164 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~----------------------- 1164 (1344)
.......+.. +.-.||...|.+ +.-.+++..+++|+.|..|.||+..+..
T Consensus 177 ~~~~~~~~~~---~~~~GHk~~V~s----Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 177 NVGENKVKAL---KVCRGHKRSVDS----VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred cCchhhhhHH---hHhcccccceeE----EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 7643333322 445699999988 7888899999999999999999932211
Q ss_pred -eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1165 -QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1165 -~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
.++..+.+|.+. |.++ .|++ ...+++++.|.+|+.||+.++. ....+.. ...++++.++|. .++|++|+
T Consensus 250 r~P~vtl~GHt~~-Vs~V-~w~d-~~v~yS~SwDHTIk~WDletg~-~~~~~~~----~ksl~~i~~~~~--~~Ll~~gs 319 (423)
T KOG0313|consen 250 RTPLVTLEGHTEP-VSSV-VWSD-ATVIYSVSWDHTIKVWDLETGG-LKSTLTT----NKSLNCISYSPL--SKLLASGS 319 (423)
T ss_pred cCceEEecccccc-eeeE-EEcC-CCceEeecccceEEEEEeeccc-ceeeeec----CcceeEeecccc--cceeeecC
Confidence 145567777765 9999 4543 7789999999999999999988 3333322 267999999998 99999999
Q ss_pred CCCcEEEEECCCCc--cceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCC--CceEEEEeccCCccccccCCC
Q 000700 1244 QAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGS 1318 (1344)
Q Consensus 1244 ~DG~I~IWDlr~~~--~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~--g~~l~~l~~~h~~f~~~~~~~ 1318 (1344)
.|..|++||.|++. ....++.+|.+.|.++.|+|... +|++|+.|+++++||+. ...+..+.+ |. ..
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~-------DK 391 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HN-------DK 391 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CC-------ce
Confidence 99999999999765 45578889999999999999765 78999999999999954 347888888 65 89
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1319 VNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1319 V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|.++.|. ++.++++||.|++|+|+.
T Consensus 392 vl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 392 VLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEEEecc-CCceEEeccCcceEEEec
Confidence 9999998 567999999999999974
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=234.49 Aligned_cols=248 Identities=18% Similarity=0.337 Sum_probs=210.6
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEE
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1147 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll 1147 (1344)
.+.+|. +.|..+.| +|+|.+|++||.|..|.+|+++...+. +-.+++|.+.|.. +.|..++..++
T Consensus 42 ~l~gh~---geI~~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN------~~~lkgHsgAVM~----l~~~~d~s~i~ 106 (338)
T KOG0265|consen 42 LLPGHK---GEIYTIKF--HPDGSCFASGGSDRAIVLWNVYGDCEN------FWVLKGHSGAVME----LHGMRDGSHIL 106 (338)
T ss_pred hcCCCc---ceEEEEEE--CCCCCeEeecCCcceEEEEeccccccc------eeeeccccceeEe----eeeccCCCEEE
Confidence 456787 89999999 789999999999999999998652211 2347899999988 99999999999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1148 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1148 agg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
++|.|++|+.||+++++ ++..+++|.+. |.++.-...+..++.+|+.||++++||+|+.+ .++++. .+..+++
T Consensus 107 S~gtDk~v~~wD~~tG~-~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~----~kyqltA 179 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGK-RIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE----NKYQLTA 179 (338)
T ss_pred EecCCceEEEEecccce-eeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc----cceeEEE
Confidence 99999999999999999 99999998775 88885334445678889999999999999887 455442 2367999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC----C-ceEE
Q 000700 1228 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----G-EQLG 1302 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~----g-~~l~ 1302 (1344)
+.|... +..+.+|+-|+.|++||++.+ ....++.+|..+|+.+..+++|.++.+-+.|.++++||+. + ..+.
T Consensus 180 v~f~d~--s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 180 VGFKDT--SDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred EEeccc--ccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence 999988 999999999999999999998 8999999999999999999999999999999999999953 3 4477
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.+ |.. .-.......+|+|++..+.+|+.|..+.+||
T Consensus 257 if~g-~~h---nfeknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 257 IFQG-HIH---NFEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred Eeec-chh---hhhhhcceeeccCCCCccccccccceEEEee
Confidence 7777 541 0112456789999999999999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=261.34 Aligned_cols=262 Identities=20% Similarity=0.286 Sum_probs=218.9
Q ss_pred EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000700 1048 AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1127 (1344)
Q Consensus 1048 tgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1127 (1344)
+++.|-.+.+-|-.++....++.+|. ++|....| +|+.++|++++.|++||+|.+.+ .... -.++||.
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~---GPVyg~sF--sPd~rfLlScSED~svRLWsl~t--~s~~-----V~y~GH~ 493 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHS---GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDT--WSCL-----VIYKGHL 493 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCC---Cceeeeee--cccccceeeccCCcceeeeeccc--ceeE-----EEecCCC
Confidence 44455557777777777788899999 99999999 78999999999999999999966 2222 3478999
Q ss_pred CCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000700 1128 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1207 (1344)
Q Consensus 1128 ~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~ 1207 (1344)
.+|+. +.|+|.|-++++++.|++-++|...... +.+.+.+|-.. |.|+ .++|+.+++++|+.|.+||+||..+
T Consensus 494 ~PVwd----V~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD-V~cv-~FHPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 494 APVWD----VQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD-VDCV-SFHPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred cceee----EEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc-cceE-EECCcccccccCCCCceEEEEEcCC
Confidence 99999 8999999999999999999999999988 89999998776 9999 7889999999999999999999999
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 000700 1208 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA 1287 (1344)
Q Consensus 1208 ~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~ 1287 (1344)
+. .++.+ .||.++|++++|+|+ |++|++|+.||.|++||+.++ ..+..+.+|.+.|.++.|+.+|.+||+|+.
T Consensus 567 G~-~VRiF---~GH~~~V~al~~Sp~--Gr~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 567 GN-SVRIF---TGHKGPVTALAFSPC--GRYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred Cc-EEEEe---cCCCCceEEEEEcCC--CceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCC
Confidence 98 66655 578899999999999 999999999999999999998 899999999999999999999999999999
Q ss_pred CCeEEEEeCCCceEE----EEec---cC------Cc-c---ccccCCCeEEEEEecCCCEEEEEE
Q 000700 1288 KQLIKVFSLEGEQLG----TIRY---HH------PS-F---MAQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1288 Dg~I~Iwd~~g~~l~----~l~~---~h------~~-f---~~~~~~~V~slafspdg~~Lasgs 1335 (1344)
|.+|++||+...... .+.. ++ ++ . ...+..+|.++.|..-...|++|.
T Consensus 640 DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 640 DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 999999995311100 0000 00 00 0 112456899999988776666653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=225.28 Aligned_cols=280 Identities=19% Similarity=0.338 Sum_probs=229.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|..+++.+.++.+|++|.+++.|.+..||-..+|+.+.++.+|. +.|+++.. +-+...++||+.|.++++||+.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHt---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHT---GAVWCCDI--DWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCC---ceEEEEEe--cCCcceeeeccccceeEEEEcC
Confidence 377899999999999999999999999999988899999999999 99999998 5689999999999999999998
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-----CCeEEEEECC-------CCceeeeeecCCCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-----VSSIMLWDLE-------KEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-----Dg~I~VWDl~-------~~~~~v~~i~~~~~~ 1176 (1344)
+ |++... -.....|+. +.|+.++..++++.+ .+.|.++|++ .+. +...+..+.+.
T Consensus 83 t--Gk~la~------~k~~~~Vk~----~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~sk 149 (327)
T KOG0643|consen 83 T--GKQLAT------WKTNSPVKR----VDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSK 149 (327)
T ss_pred C--CcEEEE------eecCCeeEE----EeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccc
Confidence 7 544322 123455666 899988888877743 4679999998 444 67788877655
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
++.. .|.+-+..|++|..||.|..||.+++...+... +.|...|+.+.++++ ..++++||.|.+-++||+++.
T Consensus 150 -it~a-~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d--~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 150 -ITSA-LWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRD--RTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred -eeee-eecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCC--cceEEecccCccceeeeccce
Confidence 7777 688999999999999999999999987566543 456789999999999 999999999999999999998
Q ss_pred ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---------------CceEEEEeccCCccccccCCCeEE
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE---------------GEQLGTIRYHHPSFMAQKIGSVNC 1321 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~---------------g~~l~~l~~~h~~f~~~~~~~V~s 1321 (1344)
+.++++. ...+|++.+++|....++.|+.....-|-... .+++..++ +|.++|++
T Consensus 223 -~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--------GHFGPINs 292 (327)
T KOG0643|consen 223 -EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--------GHFGPINS 292 (327)
T ss_pred -eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--------ccccCcce
Confidence 7888887 46789999999988877776543222222211 12333444 46699999
Q ss_pred EEEecCCCEEEEEECCCeEEEc
Q 000700 1322 LTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1322 lafspdg~~Lasgs~Dg~I~IW 1343 (1344)
++|||+|+..++|+.||.|++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 9999999999999999999984
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=231.76 Aligned_cols=279 Identities=18% Similarity=0.302 Sum_probs=235.9
Q ss_pred cCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1028 TRFEKGTKTALLQP---FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1028 ~~~~~~I~~l~fsp---dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
..|..+|..++|+| +|-+|++++.||.-.+-+-++|..+.+|.+|. +.|++... ..+...-++++.|-+-+|
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk---gavw~~~l--~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK---GAVWSATL--NKNATRAASAAADFTAKV 85 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC---cceeeeec--Cchhhhhhhhcccchhhh
Confidence 45678899999976 77799999999999999999999999999999 99999888 567778888999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
||.-+ +... . --.|..-|+. ++|+++..+|++||.++.+||||+++.+.+...+.+|.++ |..+.|+
T Consensus 86 w~a~t--gdel-h-----sf~hkhivk~----~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc 152 (334)
T KOG0278|consen 86 WDAVT--GDEL-H-----SFEHKHIVKA----VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWC 152 (334)
T ss_pred hhhhh--hhhh-h-----hhhhhheeee----EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEe
Confidence 99876 2211 1 1246666776 9999999999999999999999999887577788888887 8888666
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
. ..+.|++...|++||+||.|++. .++.+.. ...|+++.++++ |++|.++ ..+.|++||..+. .+++.++
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~----~s~VtSlEvs~d--G~ilTia-~gssV~Fwdaksf-~~lKs~k 222 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGT-EVQSLEF----NSPVTSLEVSQD--GRILTIA-YGSSVKFWDAKSF-GLLKSYK 222 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCc-EEEEEec----CCCCcceeeccC--CCEEEEe-cCceeEEeccccc-cceeecc
Confidence 5 45667777999999999999998 5555522 378999999998 8776655 5678999999988 6777776
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEE-eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1265 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTI-RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1265 ~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l-~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
. ...|.+...+|+..++++|+.|..++.|| .+|+.+..+ ++ | .++|.|+.|+|+|...|+||.||+|++
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg-h-------~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG-H-------FGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccC-C-------CCceEEEEECCCCceeeccCCCceEEE
Confidence 4 45799999999999999999999999999 678888875 55 4 389999999999999999999999999
Q ss_pred c
Q 000700 1343 H 1343 (1344)
Q Consensus 1343 W 1343 (1344)
|
T Consensus 294 W 294 (334)
T KOG0278|consen 294 W 294 (334)
T ss_pred E
Confidence 9
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=214.83 Aligned_cols=292 Identities=16% Similarity=0.224 Sum_probs=228.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1095 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1095 (1344)
...|.+++|+|.|.+.++|+...+.+|-.+..-. ..+.-+.|. +.|.|.+| +++|+++++
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk---gsiyc~~w--s~~geliat 106 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK---GSIYCTAW--SPCGELIAT 106 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC---ccEEEEEe--cCccCeEEe
Confidence 3579999999999999999999999987543210 111223455 89999999 899999999
Q ss_pred EECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEe---cCCCeEEEE-E-CCCeEEEEECCCCceeeeee
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQSGYLYAS-G-EVSSIMLWDLEKEQQMVNPI 1170 (1344)
Q Consensus 1096 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws---~~~~~Llag-g-~Dg~I~VWDl~~~~~~v~~i 1170 (1344)
|+.|++|++...... .......--.+.-|.+.|+. ++|- ..++.++++ | .|..|++-|..+++ ..+.+
T Consensus 107 gsndk~ik~l~fn~d--t~~~~g~dle~nmhdgtird----l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~ 179 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNAD--TCNATGHDLEFNMHDGTIRD----LAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHAL 179 (350)
T ss_pred cCCCceEEEEecccc--cccccCcceeeeecCCceee----eEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceee
Confidence 999999999876542 11111111235678888998 5553 234445444 3 56778888999999 89999
Q ss_pred cCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC-CC---CCCCeEEEEEecCCCCCEEEEEECCC
Q 000700 1171 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-TQ---QVERVVGISFQPGLDPAKIVSASQAG 1246 (1344)
Q Consensus 1171 ~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~-~~---h~~~I~sva~sp~~~g~~Lasgs~DG 1246 (1344)
.+|.+. |.++ ++.+|.+|++|+.|.+||+||+|-.. .+.++... .+ ..+.|.++++.|. |++|++|-.|.
T Consensus 180 sghtgh-ilal--yswn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps--grll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGH-ILAL--YSWNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS--GRLLASGHADS 253 (350)
T ss_pred cCCccc-EEEE--EEecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC--cceeeeccCCC
Confidence 999887 8888 34578999999999999999999877 45544221 11 2367999999999 99999999999
Q ss_pred cEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1247 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1247 ~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
...+||++.+ .+++.+..|...|.|+.|+|...++.+++.|..|++-|+.|..-..+.. -....|...+..+.|||
T Consensus 254 sc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~---~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 254 SCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPI---MVVAEHKDKAIQCRWHP 329 (350)
T ss_pred ceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCce---EEEEeccCceEEEEecC
Confidence 9999999998 8999999999999999999999999999999999999988765433321 11223458889999999
Q ss_pred CCCEEEEEECCCeEEEcC
Q 000700 1327 YQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1327 dg~~Lasgs~Dg~I~IWd 1344 (1344)
..-.+++.+.|.++.+|.
T Consensus 330 ~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWA 347 (350)
T ss_pred ccceeeeccCcceEEEec
Confidence 999999999999999993
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=241.97 Aligned_cols=277 Identities=17% Similarity=0.300 Sum_probs=234.3
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPI-VVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~-Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
.+.|++++|+|..++ +|+++ .-.+.||+..+....+++.-.. ..+.++.| ..||.+|++|+..|.|+|||..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFK---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhc---cceeEEEe--ecCCeEEEccCCcCcEEEecccc
Confidence 367999999998874 55554 6789999998887777777666 78999999 68999999999999999999533
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
+ ...+.+.+|..++.. +.|++.++.+++. ++|+.+++||+.+.. ....+.+|.+. |.|..+.+.++
T Consensus 100 ---r----~iLR~~~ah~apv~~----~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDY-VR~g~~~~~~~ 166 (487)
T KOG0310|consen 100 ---R----VILRQLYAHQAPVHV----TKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDY-VRCGDISPAND 166 (487)
T ss_pred ---H----HHHHHHhhccCceeE----EEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcce-eEeeccccCCC
Confidence 1 123678999999998 8898888776665 577889999999988 66688899887 99997777778
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
.++++|+.||.||+||+|.....+..+ .|..+|.++.+-|. |..|++++. ..|++||+-++++.+.....|..
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~el----nhg~pVe~vl~lps--gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVEL----NHGCPVESVLALPS--GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEe----cCCCceeeEEEcCC--CCEEEEcCC-CeEEEEEecCCceehhhhhcccc
Confidence 899999999999999999885455544 57799999999998 999999875 47999999988777777777999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
.|||+.+..++..|.+|+-|+.|+|||+ +-+.+..+++ .++|.+++.+|++..++.|-.||.+.+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---------~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---------PGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---------ccceeeEEecCCCceEEEecccceeee
Confidence 9999999999999999999999999994 4566777775 279999999999999999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=241.44 Aligned_cols=279 Identities=21% Similarity=0.363 Sum_probs=227.8
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg-~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|.++|.|++=+|.. ..+++|+.||.|+|||+...+++.+|+.|. +.|..|++. ...++++|+|.+|+.|.+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~----~~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVT----QTSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc---CceeeEEec----ccceEEecCCcceeeeec
Confidence 467899999999987 689999999999999999999999999999 999999993 378899999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
... .. +++.+ ...+.+ ++-+..+..++++|. .|-|||..... ++..+.-+.+. |.++.+.+..
T Consensus 137 ~~~-----p~---~tilg-~s~~~g----Idh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dt-i~svkfNpvE 199 (433)
T KOG0268|consen 137 DGP-----PL---HTILG-KSVYLG----IDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADS-ISSVKFNPVE 199 (433)
T ss_pred cCC-----cc---eeeec-cccccc----cccccccccccccCc--eeeecccccCC-ccceeecCCCc-eeEEecCCCc
Confidence 551 11 12221 112222 233333445555554 49999999999 99999988887 9999766667
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
..+|++|..|++|.+||+|....+.+.... ..-+.|+|+|. +..+++|+.|..++.||++....++....+|.
T Consensus 200 TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 200 TSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred chheeeeccCCceEEEecccCCccceeeee-----ccccceecCcc--ccceeeccccccceehhhhhhcccchhhcccc
Confidence 778888889999999999998855444322 34668999998 99999999999999999999889999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.|.+++|+|.|+-+++||.|.+|+||..+...-..+ + |+ .+...|.|+.|+-|.+++++||.|+.|++|.
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-Y-ht----kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-Y-HT----KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhh-h-hH----hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 9999999999999999999999999999654322222 2 33 3557899999999999999999999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=269.73 Aligned_cols=266 Identities=16% Similarity=0.232 Sum_probs=209.1
Q ss_pred CCcEEEEECCCCcEEEEe-----eCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeE-EeeeecccC
Q 000700 1052 NERIKIWNYEEDTLLNSF-----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL-VTAFSSIQG 1125 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~l~~~-----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l-vs~~~~l~~ 1125 (1344)
+|.+++|+..+.+....+ ..|. ..|++++| +++++++++|+.||.|+||+.......... ......+.+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSS---NLVCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCC---CcEEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence 667788887755444333 3355 78999999 789999999999999999997531100000 000011222
Q ss_pred CCCCccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000700 1126 HKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1204 (1344)
Q Consensus 1126 h~~~V~s~~~~v~ws~~-~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwD 1204 (1344)
...+.+ ++|++. +..+++++.||.|++||+.+++ .+..+.+|.+. |+++.+.+.++.+|++|+.||.|++||
T Consensus 532 -~~~v~~----l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 532 -RSKLSG----ICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred -cCceee----EEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 234444 889765 6778888999999999999988 88888888765 999955556889999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
++++. ....+.. ...|.++.|++. ++.+|++|+.||.|++||+++...++.++.+|...|+++.|. ++.+|++
T Consensus 605 ~~~~~-~~~~~~~----~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGV-SIGTIKT----KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCc-EEEEEec----CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence 99877 4444422 257999999654 499999999999999999998745678888999999999997 6789999
Q ss_pred EeCCCeEEEEeCC-------CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1285 GSAKQLIKVFSLE-------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1285 gS~Dg~I~Iwd~~-------g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
++.|++|+|||+. +..+..+.+ |. ..+.+++|++++.+|++|+.||.|+||+
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~-------~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMG-HT-------NVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcC-CC-------CCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999999964 345667777 65 7899999999999999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-25 Score=240.66 Aligned_cols=229 Identities=20% Similarity=0.368 Sum_probs=198.8
Q ss_pred CCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeE
Q 000700 1076 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSI 1155 (1344)
Q Consensus 1076 ~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I 1155 (1344)
..+|.|+.+ |.+.+++|..|++|+|||..+ . .+.+.+.||.+.|-| +.| +...+++|+.|.+|
T Consensus 197 skgVYClQY----DD~kiVSGlrDnTikiWD~n~----~---~c~~~L~GHtGSVLC----Lqy--d~rviisGSSDsTv 259 (499)
T KOG0281|consen 197 SKGVYCLQY----DDEKIVSGLRDNTIKIWDKNS----L---ECLKILTGHTGSVLC----LQY--DERVIVSGSSDSTV 259 (499)
T ss_pred CCceEEEEe----cchhhhcccccCceEEecccc----H---HHHHhhhcCCCcEEe----eec--cceEEEecCCCceE
Confidence 368999998 778999999999999999855 1 223568999998876 665 46688888999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~ 1235 (1344)
+|||++++. ++.++..|.+. |..+. + .++++++++.|.++.+||+.... .....+.+.||...|+.+.|+
T Consensus 260 rvWDv~tge-~l~tlihHcea-VLhlr-f--~ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd---- 329 (499)
T KOG0281|consen 260 RVWDVNTGE-PLNTLIHHCEA-VLHLR-F--SNGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD---- 329 (499)
T ss_pred EEEeccCCc-hhhHHhhhcce-eEEEE-E--eCCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc----
Confidence 999999999 99999988876 99884 4 36799999999999999998776 444445677899999999986
Q ss_pred CCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccc
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQ 1314 (1344)
Q Consensus 1236 g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~ 1314 (1344)
.+++++++.|.+|++|++.+. +.+.++.+|...|.|+.+ .++++++||.|.+|++||+ .|..+..+.+ |+
T Consensus 330 ~kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG-HE----- 400 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG-HE----- 400 (499)
T ss_pred cceEEEecCCceEEEEeccce-eeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc-hH-----
Confidence 569999999999999999998 899999999999999887 5789999999999999995 5889999998 76
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1315 KIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1315 ~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.-|.++.| +.+.+++|+.||+|+|||
T Consensus 401 --eLvRciRF--d~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 401 --ELVRCIRF--DNKRIVSGAYDGKIKVWD 426 (499)
T ss_pred --Hhhhheee--cCceeeeccccceEEEEe
Confidence 77999999 567899999999999997
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=246.39 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=237.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
...|.+++++.+...+++|+ .+.|+||+.++.++++++... .+.+..|. |.+.++++|...|.+.+||+..
T Consensus 373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fv--pgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFV--PGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred hhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEec--CCCceEEEeccCCceEEEEeeh-
Confidence 36799999999988888887 889999999999999998764 47888884 6889999999999999999965
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCce----eeeeecCC------CCCCeeE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ----MVNPIPSS------SDCSISA 1180 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~----~v~~i~~~------~~~~Vts 1180 (1344)
..++ .+.+.|.+.+++ ++.+|++..+++||.|.+|++||..-... ....+.-+ -...|.|
T Consensus 444 ---~~l~---Eti~AHdgaIWs----i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~ 513 (888)
T KOG0306|consen 444 ---ASLV---ETIRAHDGAIWS----ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLC 513 (888)
T ss_pred ---hhhh---hhhhccccceee----eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEE
Confidence 2222 346789999999 88889999999999999999999752110 11111111 1223899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
+ ..+|+|+++++|--|.+|++|-+.+-+-.+. +-||.-+|.|+.++|+ +..++|||.|..|++|-+.-+ .+-
T Consensus 514 v-~~Spdgk~LaVsLLdnTVkVyflDtlKFfls----LYGHkLPV~smDIS~D--SklivTgSADKnVKiWGLdFG-DCH 585 (888)
T KOG0306|consen 514 V-SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS----LYGHKLPVLSMDISPD--SKLIVTGSADKNVKIWGLDFG-DCH 585 (888)
T ss_pred E-EEcCCCcEEEEEeccCeEEEEEecceeeeee----ecccccceeEEeccCC--cCeEEeccCCCceEEeccccc-hhh
Confidence 9 7899999999999999999999988774343 3488999999999999 999999999999999999998 899
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1261 LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1261 ~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
+.+-+|+..|.++.|-|....+.++|.|+.|+-|| -.-+.+..+.+ |. ..|+|++.+|+|.+++++|.|.+
T Consensus 586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~-H~-------~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG-HH-------SEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc-ch-------heeeeeEEcCCCCeEEeccCCce
Confidence 99999999999999999999999999999999999 55678888888 54 78999999999999999999999
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
|++|+
T Consensus 658 IRlwE 662 (888)
T KOG0306|consen 658 IRLWE 662 (888)
T ss_pred eEeee
Confidence 99995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=221.12 Aligned_cols=245 Identities=16% Similarity=0.246 Sum_probs=209.0
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
.+..+..+. +.|..+.| +-+|++.++++.|.+|++|+... + .++ +++.+|...|.. ++-+.++.
T Consensus 9 r~~~l~~~q---gaV~avry--N~dGnY~ltcGsdrtvrLWNp~r--g--~li---ktYsghG~EVlD----~~~s~Dns 72 (307)
T KOG0316|consen 9 RLSILDCAQ---GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLR--G--ALI---KTYSGHGHEVLD----AALSSDNS 72 (307)
T ss_pred hceeecccc---cceEEEEE--ccCCCEEEEcCCCceEEeecccc--c--cee---eeecCCCceeee----cccccccc
Confidence 455667777 89999999 78999999999999999999854 2 333 678999999988 66677899
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-eeeEeecCCCCCCC
Q 000700 1145 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVE 1223 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~-~~v~~~~~~~~h~~ 1223 (1344)
.++++|.|+.|.+||+.+++ .++.+.+|... |..+ .++.+...+++|+.|.++++||.|+.. .+++++.. ...
T Consensus 73 kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~aq-VNtV-~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D 146 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGK-VDRRFRGHLAQ-VNTV-RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKD 146 (307)
T ss_pred ccccCCCCceEEEEEcccCe-eeeecccccce-eeEE-EecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcC
Confidence 99999999999999999999 99999999776 9999 677888999999999999999999764 24554433 348
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEE
Q 000700 1224 RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLG 1302 (1344)
Q Consensus 1224 ~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~ 1302 (1344)
.|.++.+. +..|++|+.||+++.||+|.+ .....+- ..+|+++.|+++++...+++-|+++++.| .+|+.+.
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 89999986 569999999999999999988 4443333 45899999999999999999999999999 6799999
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..++ |. ....-...+++.....+++|++||.|.+||
T Consensus 220 sYkG-hk-----n~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 220 SYKG-HK-----NMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred Hhcc-cc-----cceeeeeeeecccceeEEeccCCceEEEEE
Confidence 9999 76 234556778888889999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=230.74 Aligned_cols=282 Identities=16% Similarity=0.266 Sum_probs=234.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC----Ce
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GN 1101 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~ 1101 (1344)
..|..+++...|+|.|.++|+|+..|+|+|||+...+. ..+|+... ++|.++.| +.++..|++.++. |.
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~W--d~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA---GPIKDISW--DFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc---ccccccee--CCCCcEEEEEecCccceeE
Confidence 35678899999999999999999999999999875432 33466666 89999999 7888888877653 56
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1180 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vts 1180 (1344)
+.+||-.+..| .+.||...|.+ ++|.|.... ++++++|+.|.+|+-.--+ ...++..|+.- |.|
T Consensus 131 ~F~~DSG~SvG---------ei~GhSr~ins----~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskF-V~~ 195 (603)
T KOG0318|consen 131 VFLWDSGNSVG---------EITGHSRRINS----VDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKF-VNC 195 (603)
T ss_pred EEEecCCCccc---------eeeccceeEee----eeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccc-eee
Confidence 77888644222 36899999988 888887764 6677899999999876666 66677777775 999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
+ -++|||.+|++.+.||+|.+||=.+++ .+..+....+|++.|..++|+|+ +..+++++.|.+++|||+.+. +++
T Consensus 196 V-RysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~KIWdVs~~-slv 270 (603)
T KOG0318|consen 196 V-RYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIKIWDVSTN-SLV 270 (603)
T ss_pred E-EECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCC--CceEEEecCCceEEEEEeecc-ceE
Confidence 9 788999999999999999999999998 66667667789999999999999 999999999999999999998 788
Q ss_pred EEEecCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1261 LTIDAHR---GSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1261 ~tl~~h~---~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
+++.-.. .....+-|. ...|++.+.+|+|.+++. ++..+..+.+ |. ..|++++.++++++|.+|+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~G-Hn-------K~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISG-HN-------KSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecc-cc-------cceeEEEEcCCCCEEEeecc
Confidence 8887432 233445554 567889999999999994 5667788888 65 89999999999999999999
Q ss_pred CCeEEEcC
Q 000700 1337 DACVSIHS 1344 (1344)
Q Consensus 1337 Dg~I~IWd 1344 (1344)
||.|.-|+
T Consensus 341 DG~I~~W~ 348 (603)
T KOG0318|consen 341 DGHINSWD 348 (603)
T ss_pred CceEEEEe
Confidence 99999996
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=239.11 Aligned_cols=279 Identities=18% Similarity=0.337 Sum_probs=230.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
|...+..+.|-++...|++|+.|..|++|+...++ .+.++.+.. +.|+++.| .+++..+++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~--d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL---GNITSIDF--DSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC---CCcceeee--cCCCceEEeecCCCceeeeec
Confidence 45678999999999999999999999999987655 666777776 89999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. ..+. .++.+|...|++ +.|......+++|+.|.+|+.||+.+.. |..++-..+. +..| ...
T Consensus 249 d~----~r~~---~TLsGHtdkVt~----ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~~S~--cnDI-~~~-- 311 (459)
T KOG0288|consen 249 DS----LRLR---HTLSGHTDKVTA----AKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVLPGSQ--CNDI-VCS-- 311 (459)
T ss_pred cc----hhhh---hhhcccccceee----ehhhccccceeeccccchhhhhhhhhhh-eecccccccc--ccce-Eec--
Confidence 55 2222 468899999998 7777666668889999999999999988 8877665433 4555 222
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC-
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH- 1266 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h- 1266 (1344)
+..+++|..|+.||+||+|+.. ........ +.|+++..+++ +..+.+++.|.++.+.|+++. .....+.+.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g----g~vtSl~ls~~--g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g 383 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSAD-KTRSVPLG----GRVTSLDLSMD--GLELLSSSRDDTLKVIDLRTK-EIRQTFSAEG 383 (459)
T ss_pred ceeeeecccccceEEEeccCCc-eeeEeecC----cceeeEeeccC--CeEEeeecCCCceeeeecccc-cEEEEeeccc
Confidence 5678999999999999999988 45544232 69999999999 999999999999999999987 666666542
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1267 ---RGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1267 ---~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
....+.+.|||++.|+|+||.||.|+||++ +|+....+.. .. ....|++++|+|.|..|++++.++.+.+
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~-----s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-ST-----SNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CC-----CCcceEEEEEcCCCchhhcccCCcceEe
Confidence 234889999999999999999999999995 5566566655 22 1237999999999999999999999999
Q ss_pred cC
Q 000700 1343 HS 1344 (1344)
Q Consensus 1343 Wd 1344 (1344)
|.
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 94
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=215.09 Aligned_cols=249 Identities=18% Similarity=0.308 Sum_probs=206.7
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~ 1143 (1344)
.++.+++|. +++..++| +|. |..|++||.|+.||||+... .....+.+-. -.+|+..|++ ++|+|.+
T Consensus 6 ~~~~~~gh~---~r~W~~aw--hp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vl--d~~hkrsVRs----vAwsp~g 73 (312)
T KOG0645|consen 6 LEQKLSGHK---DRVWSVAW--HPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVL--DDGHKRSVRS----VAWSPHG 73 (312)
T ss_pred eEEeecCCC---CcEEEEEe--ccCCceEEEeecCCceEEEEecCC-CCcEEEEEec--cccchheeee----eeecCCC
Confidence 456778888 89999999 555 77999999999999999864 2233333211 2478899998 9999999
Q ss_pred CeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1144 GYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
.+|++++.|.++.||.-..+. .++..+.+|.+. |.|+ .++.+|++|++++.|++|-||.+.... .......+++|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-VK~V-aws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENE-VKCV-AWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccc-eeEE-EEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeecccc
Confidence 999999999999999766442 378889998776 9999 788999999999999999999998665 333333667888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc--cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCce
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1300 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~--~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~ 1300 (1344)
..|..+.|||. ..+|+++|.|.+|++|+-.... .++.++.+|...|.+++|++.|..|++++.|++|+||..-
T Consensus 151 qDVK~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~--- 225 (312)
T KOG0645|consen 151 QDVKHVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY--- 225 (312)
T ss_pred ccccEEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec---
Confidence 99999999998 8999999999999999876322 7899999999999999999999999999999999999732
Q ss_pred EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1301 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1301 l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
..+. ..|...+..++|. ...+|+++.|+.|++|
T Consensus 226 -~~~~-------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 226 -TDLS-------GMHSRALYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred -cCcc-------hhcccceEeeeec--ccceEeccCCCEEEEE
Confidence 1121 1244789999998 6689999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=216.64 Aligned_cols=277 Identities=17% Similarity=0.259 Sum_probs=227.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
..++.+++|+-+|..|++|+.|+++.||+++.++.... ..+|. +.|..++|. .+..+++++++.|.+|++||+.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---~svdql~w~-~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---DSVDQLCWD-PKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---cchhhheeC-CCCCcceEEecCCceEEEEEec
Confidence 45799999999999999999999999999997755544 34566 789999995 4678899999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
. ++.... ....... +.+.|+|+|+++++++.|..|.+.|.++.+ .+...+... .+..+++ ..++
T Consensus 96 ~--~k~~~~-----i~~~~en-----i~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~~~~~--e~ne~~w-~~~n 159 (313)
T KOG1407|consen 96 S--GKCTAR-----IETKGEN-----INITWSPDGEYIAVGNKDDRITFIDARTYK-IVNEEQFKF--EVNEISW-NNSN 159 (313)
T ss_pred c--CcEEEE-----eeccCcc-----eEEEEcCCCCEEEEecCcccEEEEEecccc-eeehhcccc--eeeeeee-cCCC
Confidence 7 333221 1111111 237999999999999999999999999887 555544422 3667744 4678
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
++|+.....|.|.|.....-+ .+. ..+.|.....||.|+|+ |+++|+|+.|-.+.+||+... -+++.+.-++-
T Consensus 160 d~Fflt~GlG~v~ILsypsLk-pv~---si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~EL-iC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLK-PVQ---SIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDEL-ICERCISRLDW 232 (313)
T ss_pred CEEEEecCCceEEEEeccccc-ccc---ccccCCcceEEEEECCC--CceEeeccccceeeccChhHh-hhheeeccccC
Confidence 888888889999998877655 444 44567799999999999 999999999999999999988 88999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC---------C
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD---------A 1338 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D---------g 1338 (1344)
+|+.+.|+.+|++||+||+|..|-|=+ -+|..+..+.. . ++...++|||...+||-++.| |
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~-------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag 303 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--E-------GPTFTVAWHPKRPLLAYACDDKDGDSNREAG 303 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--c-------CCceeEEecCCCceeeEEecCCCCccccccc
Confidence 999999999999999999999999988 57899988874 3 789999999999999988764 5
Q ss_pred eEEEc
Q 000700 1339 CVSIH 1343 (1344)
Q Consensus 1339 ~I~IW 1343 (1344)
+|+||
T Consensus 304 ~vKiF 308 (313)
T KOG1407|consen 304 TVKIF 308 (313)
T ss_pred eeEEe
Confidence 67776
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-22 Score=214.72 Aligned_cols=282 Identities=16% Similarity=0.263 Sum_probs=234.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC--CCeEEEEe
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIRIWK 1106 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~--DG~IrIWd 1106 (1344)
.....|.++.|+++|.+|++++.|..+++||..+|+.++++..+. -+|..++|. .....++.++. |.+||.-+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Ft--h~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK---YGVDLACFT--HHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc---ccccEEEEe--cCCceEEEccCCCCCceEEEE
Confidence 356889999999999999999999999999999999999999887 789999994 45556666655 88999999
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
+.+ .+ .+ +.+.||...|.+ ++.+|.+..+++++.|++|++||++..+ |...+..... .+.+++|
T Consensus 87 l~d--Nk--yl---RYF~GH~~~V~s----L~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~----pi~AfDp 150 (311)
T KOG1446|consen 87 LHD--NK--YL---RYFPGHKKRVNS----LSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGR----PIAAFDP 150 (311)
T ss_pred eec--Cc--eE---EEcCCCCceEEE----EEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCC----cceeECC
Confidence 876 32 22 568999999999 8888999999999999999999999888 7776665433 2346789
Q ss_pred CCCEEEEEECCCeEEEEECCCC-CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTP-DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~-~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
.|-++|+|...+.|++||+|.- +.+...+....+-....+.+.|+|+ |+.|+.++..+.+++.|.-.+ ....++..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G-~~~~tfs~ 227 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDG-TVKSTFSG 227 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCC-cEeeeEee
Confidence 9999999999889999999965 3344555333344578899999999 999999999999999999988 78888887
Q ss_pred CCCCe---EEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000700 1266 HRGSL---SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1266 h~~~V---tsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
+...- -...|.|+++++.+|+.||+|.+|+ -+|+.+..+++ . +.+++.++.|+|.-.++++++ ..+.
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~------~~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-P------NGGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-C------CCCCccccccCCceeeeeecC--ceEE
Confidence 75432 5678999999999999999999999 46888888877 2 458999999999988888875 5677
Q ss_pred Ec
Q 000700 1342 IH 1343 (1344)
Q Consensus 1342 IW 1343 (1344)
+|
T Consensus 299 fw 300 (311)
T KOG1446|consen 299 FW 300 (311)
T ss_pred EE
Confidence 76
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=222.86 Aligned_cols=293 Identities=20% Similarity=0.340 Sum_probs=243.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc-
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY- 1108 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~- 1108 (1344)
|.++|..++-....+.+.+++.|.+-+||.+++|.++.++.+|. +.|++++| ++.+.++++++.|++-.||...
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikf--h~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHT---GSVNSIKF--HNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred cccceeeehhhcCCcceeecccccceeEEeeccccceeeecccc---cceeeEEe--ccccceEEEccCCcchHHHHHhh
Confidence 55678888877777899999999999999999999999999999 99999999 6789999999999999999831
Q ss_pred -----CC--------C-------------------CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1109 -----DQ--------K-------------------DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1109 -----~~--------~-------------------~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
.. + ....+..+...+.+|...|.+ .+|-..+..+++++.|++-.
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a----~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA----CDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe----hhhhcCcceeeeeeccccce
Confidence 10 0 001222233456777777766 78988899999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000700 1157 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1236 (1344)
Q Consensus 1157 VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g 1236 (1344)
+||++++. .+..+.+|... .+.+ .-+|..+++++.+.|.+.++||.|..-..+. .++||...|+++.|..+
T Consensus 298 lwDVEtge-~v~~LtGHd~E-LtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~---VFQGHtdtVTS~vF~~d--- 368 (481)
T KOG0300|consen 298 LWDVETGE-VVNILTGHDSE-LTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA---VFQGHTDTVTSVVFNTD--- 368 (481)
T ss_pred eeeeccCc-eeccccCcchh-cccc-ccCCcceEEEEeccCceeEeccchhhcceee---eecccccceeEEEEecC---
Confidence 99999999 99999988665 7777 5667889999999999999999995443343 55688899999999864
Q ss_pred CEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccC
Q 000700 1237 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKI 1316 (1344)
Q Consensus 1237 ~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~ 1316 (1344)
..+++|+.|.+|++||+++.+.++.+++. ..+++.++++..+++||.--.+..|++||++|..+..+.. . -..+|.
T Consensus 369 d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr-t--sRqgHr 444 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR-T--SRQGHR 444 (481)
T ss_pred CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc-c--cccccc
Confidence 78999999999999999999899999984 6689999999999999999999999999999998887753 1 133566
Q ss_pred CCeEEEEEecCC--CEEEEEECCCeEEEcC
Q 000700 1317 GSVNCLTFHPYQ--VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1317 ~~V~slafspdg--~~Lasgs~Dg~I~IWd 1344 (1344)
.-|.|++|..+. .-|.++|.|..+.-|+
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeE
Confidence 889999997654 4578888999988874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=240.69 Aligned_cols=245 Identities=20% Similarity=0.326 Sum_probs=215.3
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEE
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1147 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll 1147 (1344)
++..+. .+|.++.| +|....++++-.+|.|.||+..+ +.++ +.+.-..-+|++ ..|-...+.++
T Consensus 8 k~~~rS---dRVKsVd~--HPtePw~la~LynG~V~IWnyet----qtmV---ksfeV~~~PvRa----~kfiaRknWiv 71 (794)
T KOG0276|consen 8 KFQSRS---DRVKSVDF--HPTEPWILAALYNGDVQIWNYET----QTMV---KSFEVSEVPVRA----AKFIARKNWIV 71 (794)
T ss_pred HhhccC---Cceeeeec--CCCCceEEEeeecCeeEEEeccc----ceee---eeeeecccchhh----heeeeccceEE
Confidence 344455 78999999 78999999999999999999854 4555 334445667777 56667788999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1148 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1148 agg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
+|++|..|+||+..+.. .+..+..|.+. |.++ ..+|...++++++.|-.|++||....-.+.+ .++||...|.+
T Consensus 72 ~GsDD~~IrVfnynt~e-kV~~FeAH~Dy-IR~i-avHPt~P~vLtsSDDm~iKlW~we~~wa~~q---tfeGH~HyVMq 145 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGE-KVKTFEAHSDY-IRSI-AVHPTLPYVLTSSDDMTIKLWDWENEWACEQ---TFEGHEHYVMQ 145 (794)
T ss_pred EecCCceEEEEecccce-eeEEeeccccc-eeee-eecCCCCeEEecCCccEEEEeeccCceeeee---EEcCcceEEEE
Confidence 99999999999999999 99999999887 9999 6778889999999999999999987765555 45688899999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEeC-CCceEEEE
Q 000700 1228 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH--APIIASGSAKQLIKVFSL-EGEQLGTI 1304 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd--g~~LasgS~Dg~I~Iwd~-~g~~l~~l 1304 (1344)
++|.|. +.+.++++|-|++|++|.+... .+..++++|...|+|+.+-+. .++|++|+.|.+|+|||. +..++.++
T Consensus 146 v~fnPk-D~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 146 VAFNPK-DPNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred EEecCC-CccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence 999998 8999999999999999999998 899999999999999999874 469999999999999995 56788889
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1305 ~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+ |. ..|+.+.|||.-..+++||.||+|+||.
T Consensus 224 eG-Ht-------~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 224 EG-HT-------NNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hc-cc-------ccceEEEecCCCcEEEEecCCccEEEec
Confidence 88 76 8899999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=249.43 Aligned_cols=248 Identities=19% Similarity=0.420 Sum_probs=211.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNY-EEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~-~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1106 (1344)
..|...|.+++|+|++.++++|+.|++|+|||. +.+..++++.+|. ..|++++| +++++++++|+.|++|+|||
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~---~~v~~~~f--~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS---TYVTSVAF--SPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC---CceEEEEe--cCCCCEEEEecCCCcEEEEe
Confidence 346678999999999999999999999999999 5568999999999 89999999 78889999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee--eeeecCCCCC-CeeEEEE
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM--VNPIPSSSDC-SISALTA 1183 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~--v~~i~~~~~~-~VtsL~~ 1183 (1344)
+.+ ++.. +.+.+|...|++ ++|++++..+++++.||.|++||+.++. . +..+..+... +++++ .
T Consensus 275 ~~~--~~~~-----~~l~~hs~~is~----~~f~~d~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~-~ 341 (456)
T KOG0266|consen 275 VRT--GECV-----RKLKGHSDGISG----LAFSPDGNLLVSASYDGTIRVWDLETGS-KLCLKLLSGAENSAPVTSV-Q 341 (456)
T ss_pred ccC--CeEE-----EeeeccCCceEE----EEECCCCCEEEEcCCCccEEEEECCCCc-eeeeecccCCCCCCceeEE-E
Confidence 976 4333 458999999998 8999999999999999999999999988 4 3556655554 68888 7
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEE
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl 1263 (1344)
+++++.++++++.|+.+++||++... ....+..+..-...+.+...++. +.++++|+.|+.|++||+.++ ..+..+
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~i~sg~~d~~v~~~~~~s~-~~~~~l 417 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTG--GKLIYSGSEDGSVYVWDSSSG-GILQRL 417 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCC--CCeEEEEeCCceEEEEeCCcc-chhhhh
Confidence 88999999999999999999999887 44444333211113444455666 999999999999999999987 788999
Q ss_pred ecC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCC
Q 000700 1264 DAH-RGSLSALAVHRHAPIIASGS--AKQLIKVFSLE 1297 (1344)
Q Consensus 1264 ~~h-~~~Vtsla~spdg~~LasgS--~Dg~I~Iwd~~ 1297 (1344)
.+| ...+..+.+|+...++++++ .|+.+++|...
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=228.82 Aligned_cols=245 Identities=19% Similarity=0.333 Sum_probs=212.8
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1026 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1026 Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
|-..|.+.+..++|+..|++||+++.|=.+.+||.++ .++++...+|. ..|.+++|. |.|+++++++.|.+|+.
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~---h~vS~V~f~--P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE---HGVSSVFFL--PLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc---cceeeEEEE--ecCCeeeecccccceeE
Confidence 3344567799999999999999999999999999986 46777788888 889999995 67899999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
|+..+ +-.. .++.+|...|+. +..++||..+++++.|.+|++|-+.+++ |...++.|.-. |-++++.
T Consensus 220 We~~t--g~cv-----~t~~~h~ewvr~----v~v~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~-vEci~wa 286 (406)
T KOG0295|consen 220 WECDT--GYCV-----KTFPGHSEWVRM----VRVNQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHP-VECIAWA 286 (406)
T ss_pred Eeccc--ceeE-----EeccCchHhEEE----EEecCCeeEEEecCCCceEEEEEeccch-hhhhhhccccc-eEEEEec
Confidence 99976 3322 568999998887 8888888888888999999999999998 88888877654 7777443
Q ss_pred cC--------------CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1185 QV--------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1185 s~--------------dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
+. .+.++.+|+.|++|++||+.++..+. ++.+|.++|..++|+|+ |++|+++.+|+++++
T Consensus 287 p~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~----tL~ghdnwVr~~af~p~--Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 287 PESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF----TLVGHDNWVRGVAFSPG--GKYILSCADDKTLRV 360 (406)
T ss_pred ccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE----EEecccceeeeeEEcCC--CeEEEEEecCCcEEE
Confidence 21 23589999999999999999997433 33478899999999999 999999999999999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
||+++. .+.+++..|..-+++++||.+.+++++|+-|.++++|.
T Consensus 361 wdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 361 WDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccc-eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999998 89999999999999999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=222.89 Aligned_cols=244 Identities=27% Similarity=0.474 Sum_probs=205.0
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeE
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1146 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~L 1146 (1344)
.++.+|. ..|++++| ++++++|++++.||.|++|+... +... ..+..|...+.. +.|.+++..+
T Consensus 3 ~~~~~h~---~~i~~~~~--~~~~~~l~~~~~~g~i~i~~~~~--~~~~-----~~~~~~~~~i~~----~~~~~~~~~l 66 (289)
T cd00200 3 RTLKGHT---GGVTCVAF--SPDGKLLATGSGDGTIKVWDLET--GELL-----RTLKGHTGPVRD----VAASADGTYL 66 (289)
T ss_pred hHhcccC---CCEEEEEE--cCCCCEEEEeecCcEEEEEEeeC--CCcE-----EEEecCCcceeE----EEECCCCCEE
Confidence 4566788 89999999 78899999999999999999965 2211 235567666655 8999998899
Q ss_pred EEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000700 1147 YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1226 (1344)
Q Consensus 1147 lagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~ 1226 (1344)
++++.+|.|++||+.++. .+..+..+... |.++ .+.+++.++++++.||.|++||+++.+ ....+. .|...|.
T Consensus 67 ~~~~~~~~i~i~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~---~~~~~i~ 139 (289)
T cd00200 67 ASGSSDKTIRLWDLETGE-CVRTLTGHTSY-VSSV-AFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLR---GHTDWVN 139 (289)
T ss_pred EEEcCCCeEEEEEcCccc-ceEEEeccCCc-EEEE-EEcCCCCEEEEecCCCeEEEEECCCcE-EEEEec---cCCCcEE
Confidence 999999999999999877 77777776554 9999 566678888888889999999999766 344332 5668999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEe
Q 000700 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIR 1305 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~ 1305 (1344)
++.|+|+ +.++++++.||.|++||++.+ +.+..+..|...+.++.|+|++..+++++.|+.|++||.. ++.+..+.
T Consensus 140 ~~~~~~~--~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPD--GTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCc--CCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh
Confidence 9999998 889999988999999999987 7888888999999999999999999999999999999965 56666665
Q ss_pred ccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1306 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1306 ~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
. |. ..+.+++|+|++.++++++.||.|++|+
T Consensus 217 ~-~~-------~~i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 217 G-HE-------NGVNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred h-cC-------CceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 5 54 6899999999998999888899999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=238.63 Aligned_cols=243 Identities=19% Similarity=0.340 Sum_probs=206.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
|.++|..++|||+++++++|++|..|+||++++.+++.++.+|- .-|..+.| ++.-.+++++|+|.+||||+..+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl---DYVRt~~F--HheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL---DYVRTVFF--HHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc---ceeEEeec--cCCCceEEEccCCCeEEEEeccC
Confidence 66899999999999999999999999999999999999999999 89999999 78899999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-------------------------
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ------------------------- 1164 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~------------------------- 1164 (1344)
++.. ..++||..-|.| ..|+|....+++++-|.+|||||+..-.
T Consensus 125 --r~~i-----avltGHnHYVMc----AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~ 193 (1202)
T KOG0292|consen 125 --RKCI-----AVLTGHNHYVMC----AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQ 193 (1202)
T ss_pred --CceE-----EEEecCceEEEe----eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCC
Confidence 3333 348999988877 8999999999999999999999975321
Q ss_pred --eee-eeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000700 1165 --QMV-NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1241 (1344)
Q Consensus 1165 --~~v-~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Las 1241 (1344)
..+ ..+.+|.. .|.-. .++|.-.+|++|+.|..|++|.....+ .-...+..||.+.|.++-|+|. .+++++
T Consensus 194 ~DaVVK~VLEGHDR-GVNwa-AfhpTlpliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~--q~lIlS 267 (1202)
T KOG0292|consen 194 TDAVVKHVLEGHDR-GVNWA-AFHPTLPLIVSGADDRQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPH--QDLILS 267 (1202)
T ss_pred cCeeeeeeeccccc-ccceE-EecCCcceEEecCCcceeeEEEecccc--ceeehhhhcccCCcceEEecCc--cceeEe
Confidence 011 12334444 48877 677888999999999999999887654 3334466789999999999998 999999
Q ss_pred EECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1242 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1242 gs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
.|.|++|++||+... ..+.+++...+..+.++.||..+++|+|-..| +.||.+
T Consensus 268 nsEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred cCCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEEEE
Confidence 999999999999987 89999988888999999999999999886544 556654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=249.30 Aligned_cols=297 Identities=18% Similarity=0.258 Sum_probs=240.1
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEECCC------------CcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000700 1024 ACWDTRFEKGTKTALLQPFSPIVVAAD--ENERIKIWNYEE------------DTLLNSFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fspdg~~Latgs--~dg~I~VWd~~t------------g~~l~~~~~h~~~~~~ItsL~f~ns~d 1089 (1344)
..|...++..|.+++.||||..++||+ .||.++||+.+. .+.+.+...|. +.|+|+.| ++|
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~---~sv~CVR~--S~d 80 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD---GSVNCVRF--SPD 80 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc---CceeEEEE--CCC
Confidence 358888888899999999999999999 899999998652 13455566787 89999999 899
Q ss_pred CCEEEEEECCCeEEEEeccC--------CCCceeEE---eeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEE
Q 000700 1090 VSLLLVASCNGNIRIWKDYD--------QKDKQKLV---TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1158 (1344)
Q Consensus 1090 ~~~L~tgs~DG~IrIWdl~~--------~~~~~~lv---s~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VW 1158 (1344)
|.+||+|++|+.|.||+... ..+....+ .+...+.+|...|.. ++|+|++.++++++.|++|.+|
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D----v~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD----VNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce----eccCCCccEEEEecccceEEEE
Confidence 99999999999999999862 11222222 234567899999998 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC---CCCCCeEEEEEecCCC
Q 000700 1159 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT---QQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1159 Dl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~---~h~~~I~sva~sp~~~ 1235 (1344)
|..+.. ++..+.+|..- |..+ .|+|-|++|++-+.|++|++|++.... +.+.+.... .-...+..+.|+|+
T Consensus 157 n~~tF~-~~~vl~~H~s~-VKGv-s~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD-- 230 (942)
T KOG0973|consen 157 NAKTFE-LLKVLRGHQSL-VKGV-SWDPIGKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD-- 230 (942)
T ss_pred ccccce-eeeeeeccccc-ccce-EECCccCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC--
Confidence 999998 99999999876 9999 788999999999999999999977644 333332211 22356889999999
Q ss_pred CCEEEEEEC----CCcEEEEECCCCccceEEEecCCCCeEEEEEcCC-----CC------------EEEEEeCCCeEEEE
Q 000700 1236 PAKIVSASQ----AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----AP------------IIASGSAKQLIKVF 1294 (1344)
Q Consensus 1236 g~~Lasgs~----DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd-----g~------------~LasgS~Dg~I~Iw 1294 (1344)
|++|+++.. -.++.|.+-.+. +.-..+-+|.+++.++.|+|. .. ++|+||.|++|.||
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 999998753 345888888776 677888999999999999982 11 68899999999999
Q ss_pred eC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1295 SL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1295 d~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.. ..+++..+.. -| ...|.+++|+|||..|.++|.||+|.+.
T Consensus 310 ~T~~~RPl~vi~~---lf----~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 310 NTALPRPLFVIHN---LF----NKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ecCCCCchhhhhh---hh----cCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 95 3455444422 11 2679999999999999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=239.86 Aligned_cols=251 Identities=20% Similarity=0.320 Sum_probs=211.5
Q ss_pred CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC
Q 000700 1063 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1142 (1344)
Q Consensus 1063 g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~ 1142 (1344)
.+.+..+.+|+ ..|+++.|.+ ..+.+|++++.|+.|+||+++. .+ .++ +++.+|..+|++ +.|+++
T Consensus 204 kk~~~~~~gH~---kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~-~~--~~l---rtf~gH~k~Vrd----~~~s~~ 269 (503)
T KOG0282|consen 204 KKLSHNLSGHT---KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYD-DR--RCL---RTFKGHRKPVRD----ASFNNC 269 (503)
T ss_pred HhheeeccCCc---cccchhhhcc-ceeeEEEecCCCceEEEEEEec-Cc--cee---hhhhcchhhhhh----hhcccc
Confidence 36678899999 9999999953 3889999999999999999987 22 233 779999999999 899999
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCeeeEeecCCCCC
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ 1221 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg-~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h 1221 (1344)
+..++++|.|+.|++||+++++ ++..+.. +..++|+. +.|++ +.|++|+.||.|+.||+|+++ .++.+ ..|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~-~~~~f~~--~~~~~cvk-f~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeY---d~h 341 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQ-VLSRFHL--DKVPTCVK-FHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEY---DRH 341 (503)
T ss_pred CCeeeeeecceeeeeeccccce-EEEEEec--CCCceeee-cCCCCCcEEEEecCCCcEEEEeccchH-HHHHH---Hhh
Confidence 9999999999999999999999 8888876 44478884 55555 999999999999999999998 55544 456
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---
Q 000700 1222 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--- 1297 (1344)
Q Consensus 1222 ~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~--- 1297 (1344)
-+.|..+.|-++ |+.+++.+.|+.++||+.+.. .+++.+. .+...+.++..||+++++++=+.|+.|.+|.+.
T Consensus 342 Lg~i~~i~F~~~--g~rFissSDdks~riWe~~~~-v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 342 LGAILDITFVDE--GRRFISSSDDKSVRIWENRIP-VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhheeeeEEccC--CceEeeeccCccEEEEEcCCC-ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 799999999999 999999999999999999987 4554333 344578899999999999999999999999843
Q ss_pred -CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1298 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1298 -g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
-.....+++ |. -.+.-..+.|||||.+|++|+.||.+.+||
T Consensus 419 r~nkkK~feG-h~-----vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 419 RLNKKKRFEG-HS-----VAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ccCHhhhhcc-ee-----ccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 233445666 54 236677899999999999999999999997
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=225.51 Aligned_cols=280 Identities=18% Similarity=0.298 Sum_probs=237.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
.+|+++...+..+.+++|+.|.++.++|..+++.+..+++|. ..|+++.| +++...+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~--~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHT---KKITSVKF--HKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcc---eEEEEEEe--ccchhheeecCCcceEEeecccccc
Confidence 578999998888899999999999999999999999999999 89999999 7899999999999999999986622
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC-CCCCCeeEEEEEcCCCCE
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~-~~~~~VtsL~~~s~dg~~ 1190 (1344)
.. .....|..+|+. +.-++.+.+++++++||...+.|++++. ++..... ..+-.+++. .++|||.+
T Consensus 295 --~~-----~~~~~h~~~V~~----ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~-~fHpDgLi 361 (506)
T KOG0289|consen 295 --EP-----TSSRPHEEPVTG----LSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSA-AFHPDGLI 361 (506)
T ss_pred --Cc-----ccccccccccee----eeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEe-eEcCCceE
Confidence 22 235778889988 7888999999999999999999999998 6655544 234457888 78899999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC-CC
Q 000700 1191 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GS 1269 (1344)
Q Consensus 1191 L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~-~~ 1269 (1344)
|.+|..||.|++||+.++. .+. .+.+|.++|..++|+.+ |.+|++++.|+.|++||+|.. +.++++...+ ..
T Consensus 362 fgtgt~d~~vkiwdlks~~-~~a---~Fpght~~vk~i~FsEN--GY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQT-NVA---KFPGHTGPVKAISFSEN--GYWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKE 434 (506)
T ss_pred EeccCCCceEEEEEcCCcc-ccc---cCCCCCCceeEEEeccC--ceEEEEEecCCeEEEEEehhh-cccceeecccccc
Confidence 9999999999999999887 333 45578899999999998 999999999999999999987 6777776433 37
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCC---CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSLE---GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~~---g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.++.|...|.+|+.++.|=.|++++-. ...+..+.. | .+..+++.|..+.++++++|.|..+++|.
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~-~-------sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD-H-------SGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh-c-------ccccceeeecccceEEeeccchhheEEee
Confidence 9999999999999999887777777633 344444444 3 37889999999999999999999999873
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=224.01 Aligned_cols=259 Identities=20% Similarity=0.383 Sum_probs=212.5
Q ss_pred CCcccccccC---------CCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCcE----EEEeeCCCCCCCCeEEEE
Q 000700 1020 NNPIACWDTR---------FEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDTL----LNSFDNHDFPDKGISKLC 1083 (1344)
Q Consensus 1020 ~~~i~~Wd~~---------~~~~I~~l~fspdg~---~Latgs~dg~I~VWd~~tg~~----l~~~~~h~~~~~~ItsL~ 1083 (1344)
.+....|+.+ |.++|.+++|.--.+ .+++|+.|.++++|.++.++. +..-++|. ..|.++.
T Consensus 124 Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk---~~V~sVs 200 (423)
T KOG0313|consen 124 DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK---RSVDSVS 200 (423)
T ss_pred CCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc---cceeEEE
Confidence 4445667765 457888888754333 699999999999999987743 33345888 8999999
Q ss_pred EEeeCCCCEEEEEECCCeEEEEeccCCC------------------CceeEEeeeecccCCCCCccccceEEEEecCCCe
Q 000700 1084 LVNELDVSLLLVASCNGNIRIWKDYDQK------------------DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1145 (1344)
Q Consensus 1084 f~ns~d~~~L~tgs~DG~IrIWdl~~~~------------------~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~ 1145 (1344)
. ..++..+++|+.|.+|+||+..... +......+...+.||..+|.+ +.|++ ...
T Consensus 201 v--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~----V~w~d-~~v 273 (423)
T KOG0313|consen 201 V--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS----VVWSD-ATV 273 (423)
T ss_pred e--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee----EEEcC-CCc
Confidence 8 6899999999999999999932110 001111233467899999988 88985 889
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000700 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1225 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I 1225 (1344)
+++++.|.+|++||+.++. ++.++.+.. .+.++ ...+..++|++|+.|..+++||.|++...+... .+.+|+++|
T Consensus 274 ~yS~SwDHTIk~WDletg~-~~~~~~~~k--sl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-s~~gH~nwV 348 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGG-LKSTLTTNK--SLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-SLIGHKNWV 348 (423)
T ss_pred eEeecccceEEEEEeeccc-ceeeeecCc--ceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEE-eeecchhhh
Confidence 9999999999999999999 888887743 38898 566789999999999999999999886443333 667999999
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1226 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
.++.|+|. +...|++|+.||++++||+|....++..+.+|...|.++.|. ++..+++|+.|++|+|+.
T Consensus 349 ssvkwsp~-~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 349 SSVKWSPT-NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred hheecCCC-CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 99999998 788899999999999999999866999999999999999998 466999999999999986
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=230.28 Aligned_cols=294 Identities=17% Similarity=0.271 Sum_probs=222.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCC-CCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDF-PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg-~~l~~~~~h~~-~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
...|+++++.|.|..+++|+.|..|+.||+..- .....|+.-.+ ....|.++.| ++.++.|++.+.....+|+|-.
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y--s~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY--SVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeee--cCCCCeEEEEecCcceeEEccC
Confidence 356899999999999999999999999998732 12222332221 1256999999 7789999998888899999964
Q ss_pred CC------CCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecC----CCCCC
Q 000700 1109 DQ------KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPS----SSDCS 1177 (1344)
Q Consensus 1109 ~~------~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~~----~~~~~ 1177 (1344)
.. +|.+ .+.....-+||...+++ .+|+|... .+++++.||++|+||+...+...+.|+. ...-.
T Consensus 245 G~~~~e~~KGDQ-YI~Dm~nTKGHia~lt~----g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 245 GFEIVEFSKGDQ-YIRDMYNTKGHIAELTC----GCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred Cceeeeeeccch-hhhhhhccCCceeeeec----cccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 31 1111 11112334678888887 89999865 5777889999999999865523444432 22334
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~--~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~ 1255 (1344)
++++ .|+++|+.|++|+.||+|.+||.+... ....+..-..|.. .|+||.|+++ |++|++-+.|+++++||++.
T Consensus 320 ~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~d--g~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 320 VTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYD--GNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ceee-ecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccc--cchhhhccCCCceeeeeccc
Confidence 6666 789999999999999999999987543 1111212234555 8999999999 99999999999999999999
Q ss_pred CccceEEEecCC--CCeEEEEEcCCCCEEEEEeC------CCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1256 HKDAYLTIDAHR--GSLSALAVHRHAPIIASGSA------KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1256 ~~~~v~tl~~h~--~~Vtsla~spdg~~LasgS~------Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
..+++....+-. -.-+.++|+|+.++|++|+. .|.+.+|| .+-+.+..+.. . ...|..+.|||
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~-------~aSvv~~~Whp 467 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-S-------TASVVRCLWHP 467 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-C-------CceEEEEeecc
Confidence 888887776543 35678899999999999864 47899999 66677777766 3 27899999999
Q ss_pred CCCEEEEEECCCeEEEc
Q 000700 1327 YQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1327 dg~~Lasgs~Dg~I~IW 1343 (1344)
.=+.+.+|+.||.++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 99999999999999987
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=242.04 Aligned_cols=271 Identities=21% Similarity=0.360 Sum_probs=227.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~-~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
...+.+..|+ +.++++++.+.+|++||..++..+.. +.+|. +.|.++++ ...+.+|++|+.|.+++|||..+
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~--~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAF--PSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCC---CCceeEEE--ecCCCEEEEEecCCcEEeEecCC
Confidence 4568888888 66899999999999999999998888 99999 99999999 34689999999999999999765
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
+.... .+.+|...+.+ ++. ....++.|+.|.+|++||+.++. ++..+.+|... |.++ .. ++.
T Consensus 281 --g~C~~-----~l~gh~stv~~----~~~--~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~-V~~v-~~--~~~ 342 (537)
T KOG0274|consen 281 --GECTH-----SLQGHTSSVRC----LTI--DPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGP-VNCV-QL--DEP 342 (537)
T ss_pred --CcEEE-----EecCCCceEEE----EEc--cCceEeeccCCceEEEEeccCcc-eEEEecccccc-EEEE-Ee--cCC
Confidence 55544 48899988877 332 35667777899999999999999 99999986665 9999 33 488
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
++++|+.||+|++||.++.+ +++ .+.+|..+|+++.+... ..+++|+.|++|++||+++..+++.++.+|..-
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~-cl~---sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGK-CLK---SLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred EEEEEecCceEEEEEhhhce-eee---eecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 99999999999999999777 444 45578899999987531 799999999999999999865689999999988
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.++.+ .+++|.+++.|++|++|| .+++.+.++.+ + +.+.|+.+++. ...+++++.||.+++||
T Consensus 416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~-~------~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG-R------HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccccc--ccceeEeccccccEEEeecccCceeeeecc-C------CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 866555 568999999999999999 67888888876 2 23678888776 56788888999999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-22 Score=233.41 Aligned_cols=274 Identities=17% Similarity=0.275 Sum_probs=224.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
..-+.|+ ..+.|++|. ...|++|+..+++.......+. ..|+++.| +++|.+|++|..+|.|.|||....+..
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~---~~vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~ 252 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGE---ELVTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKT 252 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCC---CceEEEEE--CCCCCEEEEeecCCeEEEEehhhcccc
Confidence 4556777 455777776 6689999999998777666655 79999999 789999999999999999998652222
Q ss_pred eeEEeeeecccC-CCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEE
Q 000700 1114 QKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA 1192 (1344)
Q Consensus 1114 ~~lvs~~~~l~~-h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~ 1192 (1344)
+.+.+ |...|.+ ++|+ +..+.+|+.+|.|.++|++..+..+..+.+|... |..+ .+.+++.+++
T Consensus 253 -------~~~~~~h~~rvg~----laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe-VCgL-kws~d~~~lA 317 (484)
T KOG0305|consen 253 -------RTLRGSHASRVGS----LAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE-VCGL-KWSPDGNQLA 317 (484)
T ss_pred -------ccccCCcCceeEE----Eecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce-eeee-EECCCCCeec
Confidence 34556 7877777 9997 6778888899999999999887233336666665 9999 7789999999
Q ss_pred EEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE--CCCcEEEEECCCCccceEEEecCCCCe
Q 000700 1193 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSL 1270 (1344)
Q Consensus 1193 sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs--~DG~I~IWDlr~~~~~v~tl~~h~~~V 1270 (1344)
+|+.|+.+.|||........+ +.+|.+.|..++|+|. ....||+|+ .|+.|++||..++ ..+..+.. ...|
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~----~~~H~aAVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdt-gsQV 390 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFT----FTEHTAAVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTG-ARIDSVDT-GSQV 390 (484)
T ss_pred cCCCccceEeccCCCccccEE----EeccceeeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCC-cEeccccc-CCce
Confidence 999999999999976663433 2367799999999998 788899875 6999999999988 77777663 5689
Q ss_pred EEEEEcCCCCEEEEE--eCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1271 SALAVHRHAPIIASG--SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1271 tsla~spdg~~Lasg--S~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+|.|++..+-|+++ ..++.|.||+. +-+.+..+.+ |. ..|..++++|||..+++|+.|.++++|+
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-H~-------~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-HT-------SRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-Cc-------ceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999998755553 45678999994 5667777777 66 8899999999999999999999999996
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=211.53 Aligned_cols=270 Identities=19% Similarity=0.342 Sum_probs=216.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
-...|+.+.|+|.+..|++++.||.+++||.........++ |. .++.+++| .+...+++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~---~plL~c~F---~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG---APLLDCAF---ADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC---Cceeeeec---cCCceEEEeccCceEEEEEecC
Confidence 35789999999999999999999999999998776555555 33 58999999 3578899999999999999977
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
+.... +..|...+.+ +.+.+..+.+++||.|++|++||.+... ++..+.... .|.++ +..++
T Consensus 85 --~~~~~------igth~~~i~c----i~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~~k--kVy~~---~v~g~ 146 (323)
T KOG1036|consen 85 --GNEDQ------IGTHDEGIRC----IEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQGK--KVYCM---DVSGN 146 (323)
T ss_pred --Cccee------eccCCCceEE----EEeeccCCeEEEcccCccEEEEeccccc-cccccccCc--eEEEE---eccCC
Confidence 33222 5678889988 8888899999999999999999999866 555555433 48888 34688
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc---cceEEEecC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAH 1266 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~---~~v~tl~~h 1266 (1344)
.|++|+.|..|.+||+|+.....+.. . ..-+-.+.+|++-|. +.-++++|-||.|.+=.+.... .....|+.|
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~r-e-S~lkyqtR~v~~~pn--~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRR-E-SSLKYQTRCVALVPN--GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhc-c-ccceeEEEEEEEecC--CCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999999999999877443221 1 122367899999998 8888999999998876665431 234566667
Q ss_pred CC---------CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1267 RG---------SLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1267 ~~---------~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.. +|++|+|||-...||||+.||.|.+||. +.+.+..+.. .+ ..|.+++|+.+|..||++++
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~~-------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-YE-------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-CC-------CceEEEEeccCCCeEEEEec
Confidence 42 7999999999899999999999999994 5566666654 33 67999999999999999975
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=243.06 Aligned_cols=290 Identities=13% Similarity=0.218 Sum_probs=207.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC-------CCCCeEEEEEEe-eC--CCCEEEEEEC
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF-------PDKGISKLCLVN-EL--DVSLLLVASC 1098 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~-------~~~~ItsL~f~n-s~--d~~~L~tgs~ 1098 (1344)
.|.+.|.++.|++||+|||+||.||.|+||.+...+....-..... ..+.+..+.-.. .. .....-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7889999999999999999999999999999875333111000000 000011111100 00 0111111222
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1178 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~V 1178 (1344)
...+ +..... -.-..+++..+.||...|-+ +.|+ .+++|++++.|++||+|++.... |+..|. |.+ .|
T Consensus 345 s~~~-~~p~~~---f~f~ekP~~ef~GHt~DILD----lSWS-Kn~fLLSSSMDKTVRLWh~~~~~-CL~~F~-Hnd-fV 412 (712)
T KOG0283|consen 345 SPCV-LLPLKA---FVFSEKPFCEFKGHTADILD----LSWS-KNNFLLSSSMDKTVRLWHPGRKE-CLKVFS-HND-FV 412 (712)
T ss_pred Cccc-cCCCcc---ccccccchhhhhccchhhee----cccc-cCCeeEeccccccEEeecCCCcc-eeeEEe-cCC-ee
Confidence 2221 122111 01112345678999999988 8998 57899999999999999999999 998886 444 49
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCcc
Q 000700 1179 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1258 (1344)
Q Consensus 1179 tsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~ 1258 (1344)
||+.|.+.|.++|++|+-||.||||++...+ + ..+.... .-|++++|+|+ |+..+.|+.+|.+++|++... +
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-V-v~W~Dl~---~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~l-k 484 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKK-V-VDWNDLR---DLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGL-K 484 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCe-e-Eeehhhh---hhheeEEeccC--CceEEEEEeccEEEEEEccCC-e
Confidence 9999888999999999999999999998776 3 3333332 78999999999 999999999999999999977 5
Q ss_pred ceEEEecC--------CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000700 1259 AYLTIDAH--------RGSLSALAVHRHAP-IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1259 ~v~tl~~h--------~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
....+..+ ...|+++.|.|... .+++.+.|..|+|||. +.+.+..+++ +.+ .+.-....|+.||
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-~~n-----~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-FRN-----TSSQISASFSSDG 558 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-ccc-----CCcceeeeEccCC
Confidence 55444321 22799999998654 4666688999999995 5567777887 331 2344567899999
Q ss_pred CEEEEEECCCeEEEcC
Q 000700 1329 VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1329 ~~Lasgs~Dg~I~IWd 1344 (1344)
+++++++.|..|+||+
T Consensus 559 k~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWK 574 (712)
T ss_pred CEEEEeecCceEEEEe
Confidence 9999999999999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-21 Score=234.22 Aligned_cols=271 Identities=19% Similarity=0.247 Sum_probs=198.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEE-------------EEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEEC
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLL-------------NSFDNHDFPDKGISKLCLVNEL-DVSLLLVASC 1098 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l-------------~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~ 1098 (1344)
.|.....++++..+++++.+.....|+...+..+ ..+.+|. +.|++++| ++ ++.+|++|+.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~---~~V~~v~f--sP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE---GPIIDVAF--NPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC---CCEEEEEE--cCCCCCEEEEEeC
Confidence 4555566667666666666666666765433222 1356777 89999999 56 7889999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1177 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~ 1177 (1344)
||+|++||+...............+.+|...|.+ ++|+|++ +.|++++.|+.|++||++++. .+..+..|...
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~----l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~- 170 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI----VSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQ- 170 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEE----EEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCc-
Confidence 9999999996522111111123457889988887 9999986 578888999999999999998 88888888765
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC-CeEEEEEecCCCCCEEEEEE----CCCcEEEEE
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE-RVVGISFQPGLDPAKIVSAS----QAGDIQFLD 1252 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~-~I~sva~sp~~~g~~Lasgs----~DG~I~IWD 1252 (1344)
|.++ .++++|.+|++|+.||.|++||+++++ .+..+. +|.+ .+..+.|.++ +..+++++ .|+.|++||
T Consensus 171 V~sl-a~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~---~H~~~~~~~~~w~~~--~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 171 ITSL-EWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVE---AHASAKSQRCLWAKR--KDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred eEEE-EEECCCCEEEEecCCCEEEEEECCCCc-EEEEEe---cCCCCcceEEEEcCC--CCeEEEEecCCCCCCeEEEEe
Confidence 9999 677899999999999999999999987 444443 3444 3456788887 66666544 479999999
Q ss_pred CCCCccceEEEecCC-CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCC
Q 000700 1253 IRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGS-AKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1253 lr~~~~~v~tl~~h~-~~Vtsla~spdg~~LasgS-~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
+++...++.....+. ..+....|++++.+|++|+ .|+.|++||+. ++.+....+ . +..++.+++|.|..
T Consensus 244 lr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~------s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 244 TRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-S------SVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-c------CCCCCcceEecccc
Confidence 998756666655443 4566677899999988887 59999999964 554444443 1 23567778887754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=232.31 Aligned_cols=256 Identities=17% Similarity=0.250 Sum_probs=192.8
Q ss_pred EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEECCCeEEEEeccCCCCce-eEEeeeecccCC
Q 000700 1049 ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGNIRIWKDYDQKDKQ-KLVTAFSSIQGH 1126 (1344)
Q Consensus 1049 gs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~IrIWdl~~~~~~~-~lvs~~~~l~~h 1126 (1344)
|+.++.|++|+......+..+.+|. +.|.+++| +++ +.+|++|+.||+|+|||+....... ........+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~---~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHT---SSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCC---CCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5568899999988888888899999 89999999 565 7899999999999999996522111 111122346789
Q ss_pred CCCccccceEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000700 1127 KPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1205 (1344)
Q Consensus 1127 ~~~V~s~~~~v~ws~~~~~L-lagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDl 1205 (1344)
...|.+ ++|+|++..+ ++++.|+.|++||++++. .+..+. +.. .|.++ .++++|.+|++++.|+.|++||+
T Consensus 125 ~~~V~s----Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~-~V~Sl-swspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISI----IDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPK-KLSSL-KWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEE----EEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCC-cEEEE-EECCCCCEEEEEecCCEEEEEEC
Confidence 888888 9999988776 567899999999999988 666665 333 49999 67899999999999999999999
Q ss_pred CCCCeeeEeecCCCCCCCCeEEE-----EEecCCCCCEEEEEECCC----cEEEEECCCCccceEEEec--CCCCeEEEE
Q 000700 1206 RTPDMLVCSTRPHTQQVERVVGI-----SFQPGLDPAKIVSASQAG----DIQFLDIRNHKDAYLTIDA--HRGSLSALA 1274 (1344)
Q Consensus 1206 r~~~~~v~~~~~~~~h~~~I~sv-----a~sp~~~g~~Lasgs~DG----~I~IWDlr~~~~~v~tl~~--h~~~Vtsla 1274 (1344)
++++ .+..+. +|.+.+.+. .|+++ +.+|++++.|+ .|+|||++....++..+.. +.+.+....
T Consensus 197 Rsg~-~i~tl~---gH~g~~~s~~v~~~~fs~d--~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 197 RKQE-IASSFH---IHDGGKNTKNIWIDGLGGD--DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred CCCc-EEEEEe---cccCCceeEEEEeeeEcCC--CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 9987 444443 455544332 34466 78888888774 7999999975567766543 334444444
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000700 1275 VHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1275 ~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~ 1329 (1344)
.++++.++++|+.|+.|++|++....+..+.. +. +..++.+++|.|+..
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-----s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-----SCSPFRSFGFLPKQI 319 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-----cCCCccceEEccccc
Confidence 56678899999999999999976555554443 22 347788999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=210.90 Aligned_cols=244 Identities=20% Similarity=0.286 Sum_probs=205.7
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1031 EKGTKTALLQPFS-PIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~~l~fspdg-~~Latgs~dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.+++..++|++.. +.+++++.||++++||... ...+..++.|. ..|.++.| |..++..+++++.||+|++|+..
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~---~EV~Svdw-n~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHK---REVYSVDW-NTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhh---hheEEecc-ccccceeEEeeccCCceEeecCC
Confidence 3679999999865 4888899999999999643 46888899999 89999999 35677889999999999999985
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeE-EEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL-YASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~L-lagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
. ..-+ +++.+|...|.. ..|+|....+ ++++.|+.+++||++... ....|..|... |.++.+..-+
T Consensus 136 r----~~Sv---~Tf~gh~~~Iy~----a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~~i~ah~~E-il~cdw~ky~ 202 (311)
T KOG0277|consen 136 R----PNSV---QTFNGHNSCIYQ----AAFSPHIPNLFASASGDGTLRLWDVRSPG-KFMSIEAHNSE-ILCCDWSKYN 202 (311)
T ss_pred C----Ccce---EeecCCccEEEE----EecCCCCCCeEEEccCCceEEEEEecCCC-ceeEEEeccce-eEeecccccC
Confidence 4 2222 458899988888 8999876555 455899999999998765 45558888744 9999787788
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
.+.+++|+.|+.||+||+|+-+..+.. +.+|.-.|..+.|+|. ....|++++.|-+++|||...+...+.+..-|.
T Consensus 203 ~~vl~Tg~vd~~vr~wDir~~r~pl~e---L~gh~~AVRkvk~Sph-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 203 HNVLATGGVDNLVRGWDIRNLRTPLFE---LNGHGLAVRKVKFSPH-HASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CcEEEecCCCceEEEEehhhcccccee---ecCCceEEEEEecCcc-hhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 899999999999999999987755443 3578899999999998 788999999999999999997767888888899
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 000700 1268 GSLSALAVHRH-APIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1268 ~~Vtsla~spd-g~~LasgS~Dg~I~Iwd 1295 (1344)
.-+..+.|++. ..++|+++.|+.++||+
T Consensus 279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eEEeccccccccCceeeecccccceeeec
Confidence 99999999985 44999999999999998
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=210.42 Aligned_cols=241 Identities=15% Similarity=0.272 Sum_probs=197.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
|+..|+++.|+.+|.+||||+-+|.|+||+..+|.....+...- ..|.-|.| +|.+..|+.|+.||.+-+|.+..
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~---~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV---EDIEWLKW--HPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc---CceEEEEe--cccccEEEeecCCCcEEEEECCC
Confidence 45789999999999999999999999999999998888776433 56777888 78999999999999999999965
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC---------------
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--------------- 1174 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~--------------- 1174 (1344)
+... +.+.||..++++ =.|.|+|+.++++..||+|++||..+++ ++..+....
T Consensus 180 --~~~~-----kv~~Gh~~~ct~----G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 180 --QALC-----KVMSGHNSPCTC----GEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGST 247 (399)
T ss_pred --ccee-----eEecCCCCCccc----ccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccce
Confidence 2222 347899999988 6788999999999999999999999998 666655110
Q ss_pred ------CC----------CeeEE-------------------E--EEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC
Q 000700 1175 ------DC----------SISAL-------------------T--ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1217 (1344)
Q Consensus 1175 ------~~----------~VtsL-------------------~--~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~ 1217 (1344)
+. .|..+ . .++..-.+.++|+.||+|.|||+...+ +....
T Consensus 248 ~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c-- 324 (399)
T KOG0296|consen 248 LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHIC-- 324 (399)
T ss_pred eEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheec--
Confidence 00 01111 0 011122468889999999999998766 33322
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1218 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1218 ~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
.|...|+.+.|-+ ..+|++++.||.|+.||.|++ ..+.++.+|...|.+++++|++++++|+|.|++.+||+.
T Consensus 325 --~he~~V~~l~w~~---t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 325 --EHEDGVTKLKWLN---TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred --cCCCceEEEEEcC---cchheeeccCceEEeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 5668899999976 378999999999999999999 899999999999999999999999999999999999975
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=209.02 Aligned_cols=286 Identities=14% Similarity=0.234 Sum_probs=224.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC------------C------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE------------D------TLLNSFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t------------g------~~l~~~~~h~~~~~~ItsL~f~ns~d 1089 (1344)
..|..++.+.+|++||.++|+|+.|..|+|.|++. | -.++++-.|. ..|+++.| +|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~---devn~l~F--HPr 183 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV---DEVNDLDF--HPR 183 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc---Ccccceee--cch
Confidence 45778999999999999999999999999999871 1 3466777788 89999999 789
Q ss_pred CCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000700 1090 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1169 (1344)
Q Consensus 1090 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~ 1169 (1344)
..+|++|+.|++|++||... .....+++.+++ ...|++ +.|+|.|.++++|.+-.++++||+.+.+ |...
T Consensus 184 e~ILiS~srD~tvKlFDfsK----~saKrA~K~~qd-~~~vrs----iSfHPsGefllvgTdHp~~rlYdv~T~Q-cfvs 253 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSK----TSAKRAFKVFQD-TEPVRS----ISFHPSGEFLLVGTDHPTLRLYDVNTYQ-CFVS 253 (430)
T ss_pred hheEEeccCCCeEEEEeccc----HHHHHHHHHhhc-cceeee----EeecCCCceEEEecCCCceeEEecccee-Eeee
Confidence 99999999999999999854 222223333433 345666 8999999999999999999999999988 6544
Q ss_pred ec---CCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000700 1170 IP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1170 i~---~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~-~~~~h~~~I~sva~sp~~~g~~Lasgs~D 1245 (1344)
-. .|.+ .|+++ -+++.+++.++|+.||.|++||--+++ ++.++. .|. .+.|.+..|..+ |+++++.+.|
T Consensus 254 anPd~qht~-ai~~V-~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~--gsevcSa~Ftkn--~kyiLsSG~D 326 (430)
T KOG0640|consen 254 ANPDDQHTG-AITQV-RYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHG--GSEVCSAVFTKN--GKYILSSGKD 326 (430)
T ss_pred cCccccccc-ceeEE-EecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcC--CceeeeEEEccC--CeEEeecCCc
Confidence 32 3444 49999 678899999999999999999988877 444442 222 467999999988 9999999999
Q ss_pred CcEEEEECCCCccceEEEecCCC-----CeEEEEEcCCCCEEEEEe-CCCeEEEEe-CCCceEEEEeccCCccccccCCC
Q 000700 1246 GDIQFLDIRNHKDAYLTIDAHRG-----SLSALAVHRHAPIIASGS-AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS 1318 (1344)
Q Consensus 1246 G~I~IWDlr~~~~~v~tl~~h~~-----~Vtsla~spdg~~LasgS-~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~ 1318 (1344)
..|++|.+.++ .++.++.+... --+...|+....++..-. ..+.+.-|| .++..+..+.. +|.+.
T Consensus 327 S~vkLWEi~t~-R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-------gHn~a 398 (430)
T KOG0640|consen 327 STVKLWEISTG-RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-------GHNGA 398 (430)
T ss_pred ceeeeeeecCC-ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-------CCCCC
Confidence 99999999998 78888775421 123345665566665543 346788899 44444444332 34589
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1319 VNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1319 V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
+..+.-+|.+..+.+|+.|..+++|
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeee
Confidence 9999999999999999999999999
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-22 Score=218.88 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=199.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|..+|..+.||||+++|++++.+..+.+||..+|.....+.... +..+.+++| -|||..+++|+.|+.|..||..
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--GFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc--CCCcceeEE--ccCCceeEecCCCCcEEEecCC
Confidence 356889999999999999999999999999999999988877552 268899999 6899999999999999999986
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
. ....+|+.... ..|.+ ++.++||.++++.+.|..|++++.++.. ....+..+ .+|+++ ..+.++
T Consensus 343 g-----n~~~~W~gvr~--~~v~d----lait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~lise~--~~its~-~iS~d~ 407 (519)
T KOG0293|consen 343 G-----NILGNWEGVRD--PKVHD----LAITYDGKYVLLVTVDKKIRLYNREARV-DRGLISEE--QPITSF-SISKDG 407 (519)
T ss_pred c-----chhhccccccc--ceeEE----EEEcCCCcEEEEEecccceeeechhhhh-hhcccccc--CceeEE-EEcCCC
Confidence 5 22334433332 44566 7888999999999999999999998776 55445443 349999 788999
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
+++++.-.+..+++||+.... .++.+..++.. .-|..-+|--. +..++++||.|+.|+||+..++ +++.++.+|..
T Consensus 408 k~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~-~fiIrSCFgg~-~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs~ 483 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENK-LVRKYFGHKQG-HFIIRSCFGGG-NDKFIASGSEDSKVYIWHRISG-KLLAVLSGHSK 483 (519)
T ss_pred cEEEEEcccCeeEEeecchhh-HHHHhhccccc-ceEEEeccCCC-CcceEEecCCCceEEEEEccCC-ceeEeecCCcc
Confidence 999999999999999999665 55554444321 22333344333 4579999999999999999998 89999999999
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q 000700 1269 SLSALAVHRHAP-IIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1269 ~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~ 1297 (1344)
.|++++|+|..+ ++|++|.||+|+||...
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999665 89999999999999753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=203.64 Aligned_cols=270 Identities=14% Similarity=0.291 Sum_probs=211.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCcEEEEECCC-CcEEE-EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1031 EKGTKTALLQP-FSPIVVAADENERIKIWNYEE-DTLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1031 ~~~I~~l~fsp-dg~~Latgs~dg~I~VWd~~t-g~~l~-~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.+.|.+++||| ...++++|+.||+||+|+++. |..+. ....|. ++|.+++| +.||..+++|+.|+.+++||+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~---~PvL~v~W--sddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD---GPVLDVCW--SDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC---CCeEEEEE--ccCCceEEeeccCCceEEEEc
Confidence 47899999999 555777999999999999986 34333 344566 89999999 789999999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~--~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
.+ +... .+..|..+|+. +.|-+... .|++|+.|++|+.||.+... ++.++.-... ++++.
T Consensus 102 ~S--~Q~~------~v~~Hd~pvkt----~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeR--vYa~D--- 163 (347)
T KOG0647|consen 102 AS--GQVS------QVAAHDAPVKT----CHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPER--VYAAD--- 163 (347)
T ss_pred cC--CCee------eeeecccceeE----EEEecCCCcceeEecccccceeecccCCCC-eeeeeeccce--eeehh---
Confidence 77 3322 35779999998 78876655 78899999999999999988 8887776433 67763
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEe
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTID 1264 (1344)
Q Consensus 1186 ~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~ 1264 (1344)
....+++++..+..|.+|+++.+....+.... .-+-.+.||+..++ ....+.|+.+|.+.|..+..+. +.-.+|+
T Consensus 164 v~~pm~vVata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d--~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 164 VLYPMAVVATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQD--KDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ccCceeEEEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEec--CCceEeeeecceEEEEecCCCCccCceeEE
Confidence 34568999999999999999877644333321 12356889999998 7777999999999999988641 3344667
Q ss_pred cCCC---------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEE
Q 000700 1265 AHRG---------SLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1334 (1344)
Q Consensus 1265 ~h~~---------~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasg 1334 (1344)
.|+. .|++++|||.-..|+|.+.||++.+||.+. ..+.+... |. .+|++.+|+.+|.++|-+
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-~~-------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-HP-------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc-CC-------CccceeEecCCCCEEEEE
Confidence 7762 578899999988999999999999999543 34444444 44 899999999999988765
Q ss_pred E
Q 000700 1335 S 1335 (1344)
Q Consensus 1335 s 1335 (1344)
.
T Consensus 312 ~ 312 (347)
T KOG0647|consen 312 L 312 (347)
T ss_pred e
Confidence 3
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=226.45 Aligned_cols=241 Identities=17% Similarity=0.279 Sum_probs=210.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeC-CCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDN-HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~-h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
...|+++.|+++|.+|++|..+|.|.|||.++.+.+..+.+ |. ..|.+++| ++..+.+|+.||.|..+|+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~---~rvg~laW----~~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA---SRVGSLAW----NSSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC---ceeEEEec----cCceEEEecCCCcEEEEEEec
Confidence 46799999999999999999999999999999999999998 77 89999999 488999999999999999976
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
.+... ..+.+|...|.. +.|++++.++++||.|+.+.|||..... +...+..|... |.+++|++....
T Consensus 290 ~~~~~------~~~~~H~qeVCg----Lkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aA-VKA~awcP~q~~ 357 (484)
T KOG0305|consen 290 SQHVV------STLQGHRQEVCG----LKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAA-VKALAWCPWQSG 357 (484)
T ss_pred chhhh------hhhhcccceeee----eEECCCCCeeccCCCccceEeccCCCcc-ccEEEecccee-eeEeeeCCCccC
Confidence 22221 137889999988 9999999999999999999999997777 78888888776 999988888888
Q ss_pred EEEEEE--CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE--ECCCcEEEEECCCCccceEEEec
Q 000700 1190 QLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA--SQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1190 ~L~sGs--~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasg--s~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
+||+|+ .|+.|++||..++. .+....+ .+.|.++.|++. .+.|+++ ..++.|.||+..+. +.+..+.+
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~-~i~~vdt----gsQVcsL~Wsk~--~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~g 429 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGA-RIDSVDT----GSQVCSLIWSKK--YKELLSTHGYSENQITLWKYPSM-KLVAELLG 429 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCc-Eeccccc----CCceeeEEEcCC--CCEEEEecCCCCCcEEEEecccc-ceeeeecC
Confidence 999865 59999999999888 4443322 378999999999 7666654 35678999999997 89999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
|...|..++++|+|..+++|+.|.++++|++-+
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 999999999999999999999999999999543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=227.56 Aligned_cols=279 Identities=20% Similarity=0.329 Sum_probs=220.1
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCCCc------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1036 TALLQ-PFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1036 ~l~fs-pdg~~Latgs~dg~I~VWd~~tg~------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.+..+ |.+++|.+|+.||.|++|+..... .+.+++.|. ..|+++.. ..+++.|+++|.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs---DWVNDiiL--~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS---DWVNDIIL--CGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH---hHHhhHHh--hcCCCceEEecCCceEEEeecc
Confidence 44444 456689999999999999876431 366788888 89999998 4688899999999999999986
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEE-ecCCCeEEEEECCCeEEEEECCCCce-e--------eeeec-CCCCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASGEVSSIMLWDLEKEQQ-M--------VNPIP-SSSDCS 1177 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~w-s~~~~~Llagg~Dg~I~VWDl~~~~~-~--------v~~i~-~~~~~~ 1177 (1344)
... ..+.+++..|..-|.+ +++ -++...+++||-|+.|.+||+.++.. . ...+. ++.. .
T Consensus 104 ~~~-----~~c~stir~H~DYVkc----la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~-s 173 (735)
T KOG0308|consen 104 KDN-----TFCMSTIRTHKDYVKC----LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD-S 173 (735)
T ss_pred cCc-----chhHhhhhcccchhee----eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc-c
Confidence 521 2334678999999998 666 66777888889999999999997630 1 22233 3444 4
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
|+++ ...+.|..|++|+..+.+++||.|+.++..+ ++||...|..+..+++ |..+++||.||+|++||++..
T Consensus 174 iYSL-A~N~t~t~ivsGgtek~lr~wDprt~~kimk----LrGHTdNVr~ll~~dD--Gt~~ls~sSDgtIrlWdLgqQ- 245 (735)
T KOG0308|consen 174 IYSL-AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK----LRGHTDNVRVLLVNDD--GTRLLSASSDGTIRLWDLGQQ- 245 (735)
T ss_pred eeee-ecCCcceEEEecCcccceEEeccccccceee----eeccccceEEEEEcCC--CCeEeecCCCceEEeeecccc-
Confidence 9999 6677888999999999999999999885443 3388899999999999 999999999999999999998
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000700 1258 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1258 ~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
.++.++..|...|+++..+|+-..+.+|+.||.|..-|+......++-... ..+|..+..+.+..-+-+++.|
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~-------daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE-------DAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC-------CCchhhhhhccccCCceeeecc
Confidence 899999999999999999999999999999999999886653222222201 2467777776555555666778
Q ss_pred CeEEEcC
Q 000700 1338 ACVSIHS 1344 (1344)
Q Consensus 1338 g~I~IWd 1344 (1344)
+.|+-|.
T Consensus 319 s~I~rW~ 325 (735)
T KOG0308|consen 319 SSIKRWK 325 (735)
T ss_pred ccceecC
Confidence 8888773
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=213.37 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=219.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-e-----------------eCCCCCCCCeEEEEEEeeCC
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-F-----------------DNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~-~-----------------~~h~~~~~~ItsL~f~ns~d 1089 (1344)
..|..+|.+++++|++++..+++.+|+|.=|+..+|+.... + +.|. ..|.+++. ++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~---keil~~av--S~D 213 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV---KEILTLAV--SSD 213 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc---ceeEEEEE--cCC
Confidence 45678899999999999999999999999999998864411 1 1333 67889999 889
Q ss_pred CCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000700 1090 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1169 (1344)
Q Consensus 1090 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~ 1169 (1344)
+.+|++|+.|..|.||+..+ .+ .+ +.+.+|...|.+ ++|......+++++.|+.|++|+++... .+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t--~e--hv---~~~~ghr~~V~~----L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDT--LE--HV---KVFKGHRGAVSS----LAFRKGTSELYSASADRSVKVWSIDQLS-YVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcc--cc--hh---hcccccccceee----eeeecCccceeeeecCCceEEEehhHhH-HHHH
Confidence 99999999999999999966 22 22 457899999988 8888888999999999999999999988 8899
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000700 1170 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249 (1344)
Q Consensus 1170 i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~ 1249 (1344)
+.+|++. |.+|... ..++.+-+|+.|+++++|++....++ .+.+|.+.+-|++|-. ...+++||.||.|.
T Consensus 282 lyGHqd~-v~~IdaL-~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In---~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDG-VLGIDAL-SRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFIN---DEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccc-eeeechh-cccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEec---ccceeeccCCceEE
Confidence 9999887 9999554 35667777889999999999544422 2335668999999964 57999999999999
Q ss_pred EEECCCCccceEEEe-cC-----------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc--eEEEEeccCCcccccc
Q 000700 1250 FLDIRNHKDAYLTID-AH-----------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE--QLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1250 IWDlr~~~~~v~tl~-~h-----------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~--~l~~l~~~h~~f~~~~ 1315 (1344)
+|++-+. +++.+.. +| ...|++++..|...++|+|+.+|.|++|-+... .+..+.. .+ -
T Consensus 352 LWs~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~-ls-----~ 424 (479)
T KOG0299|consen 352 LWSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS-LS-----L 424 (479)
T ss_pred Eeeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee-cc-----c
Confidence 9999987 6666554 23 127999999999999999999999999996432 2222221 11 2
Q ss_pred CCCeEEEEEecCCCEEEEEE
Q 000700 1316 IGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs 1335 (1344)
.+.|++++|+++|+.+++|-
T Consensus 425 ~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccEEEEEEEccCCCEEEEec
Confidence 37899999999999666653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=216.99 Aligned_cols=255 Identities=18% Similarity=0.322 Sum_probs=204.1
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE----------EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC
Q 000700 1030 FEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL----------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1098 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg~~----------l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~ 1098 (1344)
|.+.|..+.+-|..+ ++|+++..+.|.|||+.+..- -.++.+|. ..-.+|+|. ......|++|+.
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~---~eg~glsWn-~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE---KEGYGLSWN-RQQEGTLLSGSD 198 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec---ccccccccc-cccceeEeeccC
Confidence 567888888888776 677788999999999875321 12677888 456778993 456778999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEE-EECCCeEEEEECCC--CceeeeeecCCCC
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEK--EQQMVNPIPSSSD 1175 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla-gg~Dg~I~VWDl~~--~~~~v~~i~~~~~ 1175 (1344)
|++|++||+.........+.....+.+|...|.. ++|++....+++ +++|+.+.|||+++ .+ +.....+|..
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD----V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVED----VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHSA 273 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceeh----hhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccCC
Confidence 9999999997643332334444568899999999 899887766555 48999999999994 45 6666777766
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~ 1255 (1344)
. |.|+.+.+.++.+|++|+.|++|++||+|+...... .+.+|...|.+|.|+|+ ....|++++.|+.+.+||+..
T Consensus 274 ~-vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 274 E-VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred c-eeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEEeCCC-CCceeEecccCCcEEEEeccc
Confidence 5 999977777888999999999999999998775444 45678899999999999 889999999999999999975
Q ss_pred Cc-------------cceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 000700 1256 HK-------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1256 ~~-------------~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~g 1298 (1344)
-+ +++.+-.+|...|..+.|+|+.+ .|++.+.|+.+.||....
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 43 23456668999999999999988 577889999999999653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=216.04 Aligned_cols=254 Identities=17% Similarity=0.313 Sum_probs=198.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEE---eeeecccCCCCCccccceEEEEecC-CCeEEEEECC
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV---TAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEV 1152 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv---s~~~~l~~h~~~V~s~~~~v~ws~~-~~~Llagg~D 1152 (1344)
+.|+.+.+.+ ++..++++++..+.|.|||........... ..--.+.+|...-.+ +.|++. .+++++++.|
T Consensus 125 gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g----lsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 125 GEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYG----LSWNRQQEGTLLSGSDD 199 (422)
T ss_pred ccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccc----cccccccceeEeeccCC
Confidence 6788888864 678899999999999999986543332211 001136788875444 889765 6788888999
Q ss_pred CeEEEEECCCCce------eeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000700 1153 SSIMLWDLEKEQQ------MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1226 (1344)
Q Consensus 1153 g~I~VWDl~~~~~------~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~ 1226 (1344)
+.|++||+..... ....+.+|... |..+++...+.++|++++.|+.+.|||.|++. .+......+|.+.|.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~-VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDV-VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcc-eehhhccccchhhheeecCCCeEEEEEcCCCC--CCCcccccccCCcee
Confidence 9999999986541 23455666665 99997777788999999999999999999632 112224457889999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCC--CceE--
Q 000700 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE--GEQL-- 1301 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~--g~~l-- 1301 (1344)
|++|+|. ++..||+||.|++|++||+|+...++.++.+|+..|.++.|+|+.. +||+++.|+.+.|||++ |+..
T Consensus 277 ~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 277 CVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999998 7899999999999999999999899999999999999999999754 89999999999999964 2221
Q ss_pred --------EEEeccCCccccccCCCeEEEEEecCCCE-EEEEECCCeEEEcC
Q 000700 1302 --------GTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIHS 1344 (1344)
Q Consensus 1302 --------~~l~~~h~~f~~~~~~~V~slafspdg~~-Lasgs~Dg~I~IWd 1344 (1344)
.-+.. |. +|...|..+.|+|+..+ +++.+.|+.+.||.
T Consensus 356 eda~dgppEllF~-Hg----GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 356 EDAEDGPPELLFI-HG----GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred hhhccCCcceeEE-ec----CcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 11112 32 56789999999999964 67778899999995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=215.78 Aligned_cols=281 Identities=15% Similarity=0.227 Sum_probs=229.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
.|+.-|.++.++...+++.||+ .|.|+|||+... ..+..+...+ .+..|.++.. .+||..|++|+.-.++.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL--~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKL--LPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC-cccceeeeEe--cCCCceEEeccccceeeee
Confidence 4677788999999999999998 899999998632 2333343332 2357888888 6899999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
|+.......+.. +......... ++.++|.+..++++.||.|.|||++... .++.+++|.+. +.|| ..+
T Consensus 493 DLAapTprikae-----ltssapaCyA----La~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDG-ascI-dis 560 (705)
T KOG0639|consen 493 DLAAPTPRIKAE-----LTSSAPACYA----LAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI-DIS 560 (705)
T ss_pred eccCCCcchhhh-----cCCcchhhhh----hhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCC-ceeE-Eec
Confidence 997632222211 2222222233 7788999999999999999999999999 99999999998 9999 778
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
.+|..|.+|+-|.+||.||+|++..+.+ . .+ .+.|.++.++|. +.++++|-.++.|.|...... ....+.-
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqq-h-dF---~SQIfSLg~cP~--~dWlavGMens~vevlh~skp--~kyqlhl 631 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQ-H-DF---SSQIFSLGYCPT--GDWLAVGMENSNVEVLHTSKP--EKYQLHL 631 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhh-h-hh---hhhheecccCCC--ccceeeecccCcEEEEecCCc--cceeecc
Confidence 8999999999999999999998874332 1 22 478999999999 999999999999999888754 5566777
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
|+..|.++.|.+.|+++++.+.|..+..|.+ -|..+...+. .+.|.++..+.+.++++||+.|..-.||
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCcceeeeeccCceEEEecCCCcceEEE
Confidence 8999999999999999999999999999994 4666665554 3789999999999999999999888877
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=221.48 Aligned_cols=265 Identities=15% Similarity=0.224 Sum_probs=221.9
Q ss_pred ccCCcccccccCCC--------CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000700 1018 KLNNPIACWDTRFE--------KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1018 kl~~~i~~Wd~~~~--------~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d 1089 (1344)
+-...+..|+.... .-+.+..|-|.+.++++|...|.+.|||+.+...+.++++|. +.|++++. .+|
T Consensus 391 ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd---gaIWsi~~--~pD 465 (888)
T KOG0306|consen 391 GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD---GAIWSISL--SPD 465 (888)
T ss_pred cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc---cceeeeee--cCC
Confidence 34466889998854 346678899999999999999999999999999999999999 99999999 789
Q ss_pred CCEEEEEECCCeEEEEeccCCC---CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000700 1090 VSLLLVASCNGNIRIWKDYDQK---DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1166 (1344)
Q Consensus 1090 ~~~L~tgs~DG~IrIWdl~~~~---~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~ 1166 (1344)
+..++|||.|.+|++||..... +....+ ........-....-.+++.++|++.+|+++--|.+|+||-+++-+ .
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~--lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-F 542 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKV--LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-F 542 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCccccee--eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-e
Confidence 9999999999999999984311 111111 000011111122233459999999999999999999999999998 8
Q ss_pred eeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000700 1167 VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1246 (1344)
Q Consensus 1167 v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG 1246 (1344)
...+.+|.- +|.|| -.+++++++++|+.|..|++|-+.-+. +.+. +-+|...|.++.|.|. ...+.+++.||
T Consensus 543 flsLYGHkL-PV~sm-DIS~DSklivTgSADKnVKiWGLdFGD-CHKS---~fAHdDSvm~V~F~P~--~~~FFt~gKD~ 614 (888)
T KOG0306|consen 543 FLSLYGHKL-PVLSM-DISPDSKLIVTGSADKNVKIWGLDFGD-CHKS---FFAHDDSVMSVQFLPK--THLFFTCGKDG 614 (888)
T ss_pred eeeeccccc-ceeEE-eccCCcCeEEeccCCCceEEeccccch-hhhh---hhcccCceeEEEEccc--ceeEEEecCcc
Confidence 888888866 49999 788999999999999999999999887 3332 3377899999999999 99999999999
Q ss_pred cEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc
Q 000700 1247 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1247 ~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~ 1299 (1344)
.|+-||-... +.+.++.+|...|+|++++|+|.+++++|.|.+|++|..+.+
T Consensus 615 kvKqWDg~kF-e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 615 KVKQWDGEKF-EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEeechhhh-hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9999999988 899999999999999999999999999999999999996543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=219.99 Aligned_cols=228 Identities=13% Similarity=0.181 Sum_probs=178.0
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEECC
Q 000700 1029 RFEKGTKTALLQP-FSPIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCN 1099 (1344)
Q Consensus 1029 ~~~~~I~~l~fsp-dg~~Latgs~dg~I~VWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~D 1099 (1344)
.|...|.+++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|. ..|.+++| ++++ ++|++|+.|
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---~~V~~l~f--~P~~~~iLaSgs~D 147 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---KKVGIVSF--HPSAMNVLASAGAD 147 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---CcEEEEEe--CcCCCCEEEEEeCC
Confidence 4678899999999 7889999999999999999765 3467788898 89999999 5654 799999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1179 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt 1179 (1344)
++|+|||+.. +.. . ..+.+|...|.+ ++|++++..|++++.||.|++||++++. .+..+..|.+..+.
T Consensus 148 gtVrIWDl~t--g~~--~---~~l~~h~~~V~s----la~spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 148 MVVNVWDVER--GKA--V---EVIKCHSDQITS----LEWNLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQ 215 (493)
T ss_pred CEEEEEECCC--CeE--E---EEEcCCCCceEE----EEEECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcce
Confidence 9999999976 322 2 346788888887 9999999999999999999999999998 88888888665344
Q ss_pred EEEEEcCCCCEEEEEE----CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEECC
Q 000700 1180 ALTASQVHGGQLAAGF----VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIR 1254 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs----~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs-~DG~I~IWDlr 1254 (1344)
.+ .+.+++..+++++ .|+.|++||+++.......... .+...+....|+++ +..+++|+ .||.|++||++
T Consensus 216 ~~-~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~--d~~~~~~~~~~d~d--~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 216 RC-LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL--DQSSALFIPFFDED--TNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EE-EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc--CCCCceEEEEEcCC--CCEEEEEEeCCCeEEEEEee
Confidence 44 4555666666543 4799999999976544443321 22345666778888 88888887 59999999999
Q ss_pred CCccceEEEec-CCCCeEEEEEcCCC
Q 000700 1255 NHKDAYLTIDA-HRGSLSALAVHRHA 1279 (1344)
Q Consensus 1255 ~~~~~v~tl~~-h~~~Vtsla~spdg 1279 (1344)
++ .++..... +..++.+++|.|..
T Consensus 291 ~~-~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 291 NE-RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CC-ceEEEeeccCCCCCcceEecccc
Confidence 87 56555443 44567888888853
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=195.67 Aligned_cols=246 Identities=19% Similarity=0.262 Sum_probs=200.1
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeE
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1146 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~L 1146 (1344)
+.|.... +.|+++.| +.+|.+|++++.|.++++||... +++. +++..+...+.. ++|......+
T Consensus 8 k~f~~~~---~~i~sl~f--s~~G~~litss~dDsl~LYd~~~--g~~~-----~ti~skkyG~~~----~~Fth~~~~~ 71 (311)
T KOG1446|consen 8 KVFRETN---GKINSLDF--SDDGLLLITSSEDDSLRLYDSLS--GKQV-----KTINSKKYGVDL----ACFTHHSNTV 71 (311)
T ss_pred cccccCC---CceeEEEe--cCCCCEEEEecCCCeEEEEEcCC--Ccee-----eEeecccccccE----EEEecCCceE
Confidence 3444434 78999999 89999999999999999999966 3332 234555555555 7888788888
Q ss_pred EEEEC--CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1147 YASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1147 lagg~--Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
+.++. |.+||..++.+.+ .++.+.+|... |+++ ..+|.++.|++++.|++||+||+|..+.... +.. ..
T Consensus 72 i~sStk~d~tIryLsl~dNk-ylRYF~GH~~~-V~sL-~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-l~~-----~~ 142 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNK-YLRYFPGHKKR-VNSL-SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-LNL-----SG 142 (311)
T ss_pred EEccCCCCCceEEEEeecCc-eEEEcCCCCce-EEEE-EecCCCCeEEecccCCeEEeeEecCCCCceE-Eec-----CC
Confidence 88764 8899999999999 99999999887 9999 5677789999999999999999997763332 211 23
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCC-ccceEEEecC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCc
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAH---RGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGE 1299 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~-~~~v~tl~~h---~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~ 1299 (1344)
-..++|.|. |-++|+|...+.|++||+|.. +.|..++... ....+.+.|+|+|++|..++..+.+++.| .+|.
T Consensus 143 ~pi~AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 143 RPIAAFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CcceeECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 345889999 999999998889999999975 3577777654 56789999999999999999999999999 8999
Q ss_pred eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1300 QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1300 ~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.++.. +.. ...---..+|.||++++.+|+.||+|.+|+
T Consensus 221 ~~~tfs~-~~~----~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 221 VKSTFSG-YPN----AGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EeeeEee-ccC----CCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 9999988 652 111225678999999999999999999995
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=203.35 Aligned_cols=240 Identities=19% Similarity=0.306 Sum_probs=206.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|...|....++.+-..-|+++.|-+-+|||.-+|..+.+|... .-|.+++| +.|.++|+||+.++.+||||+.
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk----hivk~~af--~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK----HIVKAVAF--SQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh----heeeeEEe--cccchhhhccchHHHhhhhhcc
Confidence 35678888889888888999999999999999999999888743 36899999 7899999999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
..+... ..+.+|...|+. +.|...+..++++.+|++||+||.+++. .++++...+ .|+++ -.+++|
T Consensus 131 ~p~App------~E~~ghtg~Ir~----v~wc~eD~~iLSSadd~tVRLWD~rTgt-~v~sL~~~s--~VtSl-Evs~dG 196 (334)
T KOG0278|consen 131 RPKAPP------KEISGHTGGIRT----VLWCHEDKCILSSADDKTVRLWDHRTGT-EVQSLEFNS--PVTSL-EVSQDG 196 (334)
T ss_pred CCCCCc------hhhcCCCCccee----EEEeccCceEEeeccCCceEEEEeccCc-EEEEEecCC--CCcce-eeccCC
Confidence 643333 347899999998 8898899999999999999999999999 888888743 48999 567788
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEE-ecCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI-DAHR 1267 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl-~~h~ 1267 (1344)
+++.++ ..++|++||..+-. +++.++.. ..|.+..++|+ ...+++|+.|+.++.||..++ +.+..+ ++|-
T Consensus 197 ~ilTia-~gssV~Fwdaksf~-~lKs~k~P----~nV~SASL~P~--k~~fVaGged~~~~kfDy~Tg-eEi~~~nkgh~ 267 (334)
T KOG0278|consen 197 RILTIA-YGSSVKFWDAKSFG-LLKSYKMP----CNVESASLHPK--KEFFVAGGEDFKVYKFDYNTG-EEIGSYNKGHF 267 (334)
T ss_pred CEEEEe-cCceeEEecccccc-ceeeccCc----cccccccccCC--CceEEecCcceEEEEEeccCC-ceeeecccCCC
Confidence 877665 45789999999887 55555332 67999999999 799999999999999999998 666665 8999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
++|.|+.|+|+|...|+||.||+|++|.+.
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999999999999999954
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=207.19 Aligned_cols=243 Identities=17% Similarity=0.275 Sum_probs=216.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
...|.|+.|+.|...||+|+.||.|+||.+++|.+++.|. .|. .+|+++.| +.|+..+++++.|.++||.-+..
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt---kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT---KGVTCLSF--SRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc---cCeeEEEE--ccCcchhhcccccceEEEecccc
Confidence 4789999999999999999999999999999999999998 788 89999999 78999999999999999998866
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeeEEEEEcCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHG 1188 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~-~~~~VtsL~~~s~dg 1188 (1344)
|+. .+.+.||..-|+. ..|.++|.++++++.||+|+||+..+.. |+.+++.. .+.+|.++..++.+.
T Consensus 338 --GK~-----LKEfrGHsSyvn~----a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 338 --GKC-----LKEFRGHSSYVNE----ATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred --chh-----HHHhcCccccccc----eEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCC
Confidence 332 2568999999998 8999999999999999999999999999 99998753 455788987888888
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
..++++...++|.+.++... .++.+..-+...+...+..++|. |.++++.+.|+.++.|.+.++ ..-.++..|..
T Consensus 406 eh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi~~~lSpk--GewiYcigED~vlYCF~~~sG-~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFINAILSPK--GEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEK 480 (508)
T ss_pred ceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceEEEEecCC--CcEEEEEccCcEEEEEEeecC-ceeeeeecccc
Confidence 89999999999999987643 56666544445567788899999 999999999999999999998 78899999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
.+-.++-||+.+.+|+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999994
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=216.09 Aligned_cols=272 Identities=16% Similarity=0.322 Sum_probs=216.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE--EeeCCCCCCCCeEE-EEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISK-LCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~--~~~~h~~~~~~Its-L~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
.|...|..+++.+.. .+++++.||++++|+-..++.+. .+.+|. +-|.. ++|.. .++..+++|+.|+.|.+|
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAE-SDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCc---ceeeccceecc-ccCcceEeecccceEEEE
Confidence 455677787776544 88999999999999987665544 356566 56666 88853 677789999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
.... ..+ +..+.+|...|.+ +.-.. .+.+++|+.|.++++|-... +...+.+|... |+++..++
T Consensus 87 ~~~~--~~P-----~~~LkgH~snVC~----ls~~~-~~~~iSgSWD~TakvW~~~~---l~~~l~gH~as-VWAv~~l~ 150 (745)
T KOG0301|consen 87 KLSQ--AEP-----LYTLKGHKSNVCS----LSIGE-DGTLISGSWDSTAKVWRIGE---LVYSLQGHTAS-VWAVASLP 150 (745)
T ss_pred ecCC--CCc-----hhhhhccccceee----eecCC-cCceEecccccceEEecchh---hhcccCCcchh-eeeeeecC
Confidence 9855 222 2568999999887 44443 44599999999999997654 56678888776 99996664
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
++ .+++|+.|.+|++|.- ++ ..+ ++.+|...|+++++-++ ..+++++.||.|++|++. + +.+.++.+
T Consensus 151 -e~-~~vTgsaDKtIklWk~--~~-~l~---tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~~-g-e~l~~~~g 217 (745)
T KOG0301|consen 151 -EN-TYVTGSADKTIKLWKG--GT-LLK---TFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDLD-G-EVLLEMHG 217 (745)
T ss_pred -CC-cEEeccCcceeeeccC--Cc-hhh---hhccchhheeeeEEecC---CCeEeecCCceEEEEecc-C-ceeeeeec
Confidence 33 8999999999999975 22 333 55688999999999875 578999999999999995 3 79999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|..-|.+++...++..++++++|++++||+.. +..+.+. |+ ...|+++.+-++|. +++|++||.|+||.
T Consensus 218 htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~--lP------ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVIT--LP------TTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred cceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEe--cC------ccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999999988888899999999999999976 6667776 33 25899999988876 56777899999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=207.39 Aligned_cols=286 Identities=15% Similarity=0.236 Sum_probs=221.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEECCCeEEEEec
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~--tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl 1107 (1344)
..+|++|.|||..+.|++|+.||+++||.++ ....++.+.-.. .+|.+.+| .++|. .+++++.......||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f--~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEF--APNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc---Cccceeee--cCCCceEEEecccceEEEEeec
Confidence 3789999999999999999999999999876 334555555444 78999999 67888 8999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCC-CccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKP-GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~-~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
.+ .+...+ ....++.. .+.. ...++++.+|+..|..|.|.+....++. .+..++.. +.|..+ .++.
T Consensus 288 e~--ak~~k~---~~~~g~e~~~~e~----FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~Kie--G~v~~~-~fsS 354 (514)
T KOG2055|consen 288 ET--AKVTKL---KPPYGVEEKSMER----FEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKIE--GVVSDF-TFSS 354 (514)
T ss_pred cc--cccccc---cCCCCcccchhhe----eEecCCCCeEEEcccCceEEeehhhhhh-hhheeeec--cEEeeE-EEec
Confidence 76 333333 23344432 2333 6778999999999999999999999998 88877763 338888 5567
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC-----CccceE
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-----HKDAYL 1261 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~-----~~~~v~ 1261 (1344)
++..|++.+.+|.|.+||++... +...+.... .-.-++++.+++ +.+||+||..|.|.|||..+ ..+|+.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G--~v~gts~~~S~n--g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNS-CLHRFVDDG--SVHGTSLCISLN--GSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcc-eEEEEeecC--ccceeeeeecCC--CceEEeccCcceEEEeccchhhccCCCCchh
Confidence 89999999999999999999986 666663331 112345666677 99999999999999999653 226788
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCceEE-EEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSA--KQLIKVFSLEGEQLG-TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~--Dg~I~Iwd~~g~~l~-~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg 1338 (1344)
++..-...|+++.|++++++||.+|. +..+++-.+....+. .+.. .....+.|+|++|+|.+.+||.|..+|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-----~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-----SNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-----CCCcccceEEEEecCCCceEEeecCCC
Confidence 88777889999999999999988764 456777664432222 1211 123557899999999999999999999
Q ss_pred eEEEcC
Q 000700 1339 CVSIHS 1344 (1344)
Q Consensus 1339 ~I~IWd 1344 (1344)
.|.+|.
T Consensus 505 rv~l~k 510 (514)
T KOG2055|consen 505 RVHLFK 510 (514)
T ss_pred ceeeEe
Confidence 999994
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.1e-20 Score=196.70 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=196.7
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEE
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1147 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll 1147 (1344)
.+.-..++...|.+|+|++ ....++++||.||+||+|++... +.... +....|.+++.+ ++|+.+|..++
T Consensus 19 d~ev~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~-g~~~~----ka~~~~~~PvL~----v~WsddgskVf 88 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNS-GQLVP----KAQQSHDGPVLD----VCWSDDGSKVF 88 (347)
T ss_pred ceecCCCcccchheeEecc-ccCceEEecccCCceEEEEEecC-Ccccc----hhhhccCCCeEE----EEEccCCceEE
Confidence 3444455668999999943 36677779999999999999763 22111 446678888877 99999999999
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE
Q 000700 1148 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV 1226 (1344)
Q Consensus 1148 agg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg-~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~ 1226 (1344)
+|+.|+.+++||+.+++ +..+..|... |.++.+....+ ..|++|+.|++|+.||.|... .+..+ .+. ..+.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~-~LP---eRvY 160 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQ--VSQVAAHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATL-QLP---ERVY 160 (347)
T ss_pred eeccCCceEEEEccCCC--eeeeeecccc-eeEEEEecCCCcceeEecccccceeecccCCCC-eeeee-ecc---ceee
Confidence 99999999999999998 6677777554 99997776433 478999999999999999887 44444 222 6777
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---ceEE
Q 000700 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG---EQLG 1302 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~-h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g---~~l~ 1302 (1344)
++.+- ...++++..+..|.+|+++++....+.+.. -+-.++|++...+..-.|.|+-+|.+.|..++. +.-.
T Consensus 161 a~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 161 AADVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred ehhcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 77764 458899999999999999876333332221 234689999999999889999999999998653 5556
Q ss_pred EEeccCCccc--cccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1303 TIRYHHPSFM--AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 ~l~~~h~~f~--~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+++. |..-. ......|++++|||....|+|+|+||++.+||
T Consensus 237 tFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 237 TFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred eEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 7888 66321 12356799999999999999999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=194.22 Aligned_cols=242 Identities=19% Similarity=0.290 Sum_probs=198.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC-CCe
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGY 1145 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~ 1145 (1344)
+.+++|. ..|.+++| ..+|..|++|+.|+++++|++.......+. ...+|...|.. ++|++. ...
T Consensus 14 r~~~~~~---~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~-----~~~gh~~svdq----l~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHV---QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL-----VYRGHTDSVDQ----LCWDPKHPDL 79 (313)
T ss_pred HHhhhhh---hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh-----cccCCCcchhh----heeCCCCCcc
Confidence 3455666 78999999 789999999999999999999763222222 36788888877 777665 456
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000700 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1225 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I 1225 (1344)
+++++.|++|++||+++++ ++..+....+. |.- .++|+|+++++|..|..|.+.|.|+.+ ..... .+ ...+
T Consensus 80 ~atas~dk~ir~wd~r~~k-~~~~i~~~~en-i~i--~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~~-~~---~~e~ 150 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGK-CTARIETKGEN-INI--TWSPDGEYIAVGNKDDRITFIDARTYK-IVNEE-QF---KFEV 150 (313)
T ss_pred eEEecCCceEEEEEeccCc-EEEEeeccCcc-eEE--EEcCCCCEEEEecCcccEEEEEecccc-eeehh-cc---ccee
Confidence 7777899999999999999 88888776554 444 478899999999999999999999887 33332 12 2568
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEE
Q 000700 1226 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTI 1304 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l 1304 (1344)
..++|+-+ +++++..+..|+|.|...... +++.++++|.....|+.|+|+|++||+|+.|-.+.+||++. -++..+
T Consensus 151 ne~~w~~~--nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 151 NEISWNNS--NDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred eeeeecCC--CCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 88999865 788888788899999999988 89999999999999999999999999999999999999653 344455
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1305 ~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
.- ++ -+|..+.|+.+|++||+||+|..|-|
T Consensus 228 sR-ld-------wpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 228 SR-LD-------WPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cc-cc-------CceEEEEeccCcceeeccCccceEEe
Confidence 44 44 68999999999999999999988865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-20 Score=223.31 Aligned_cols=241 Identities=19% Similarity=0.355 Sum_probs=203.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
|.++|.+++|..-+++|++|+.|.+++|||..+|++...+.+|. +.|.++.. ...++++|+.|.+|++|++..
T Consensus 248 H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~---stv~~~~~----~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 248 HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHT---SSVRCLTI----DPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCC---ceEEEEEc----cCceEeeccCCceEEEEeccC
Confidence 44789999998888899999999999999999999999999999 88888876 567888899999999999975
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
+... +.+.+|...|++ +..+ ++.+++|+.||+|+|||+.+.+ ++..+.+|... |+++ .+... +
T Consensus 321 --~~~l-----~l~~~h~~~V~~----v~~~--~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~-V~sl-~~~~~-~ 383 (537)
T KOG0274|consen 321 --GACL-----NLLRGHTGPVNC----VQLD--EPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGR-VYSL-IVDSE-N 383 (537)
T ss_pred --cceE-----EEeccccccEEE----EEec--CCEEEEEecCceEEEEEhhhce-eeeeecCCcce-EEEE-EecCc-c
Confidence 3222 346679999988 5554 8899999999999999999999 99999998876 9999 55433 8
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec-CCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-HRG 1268 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~-h~~ 1268 (1344)
.+++|+.|++|++||+++...++. ++.+|.+-+..+.+. ++.|++++.||+|++||...+ +++.++.+ |.+
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~----~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~ 455 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLR----DNFLVSSSADGTIKLWDAEEG-ECLRTLEGRHVG 455 (537)
T ss_pred eEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccc----cceeEeccccccEEEeecccC-ceeeeeccCCcc
Confidence 999999999999999999832444 455677888777664 679999999999999999998 89999998 678
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEE
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTI 1304 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l 1304 (1344)
.|+++++. ...+++++.||.+++||+ ++.....+
T Consensus 456 ~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 456 GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 88888876 568888999999999995 45544444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=220.45 Aligned_cols=294 Identities=17% Similarity=0.252 Sum_probs=227.1
Q ss_pred cccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE
Q 000700 1022 PIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1022 ~i~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
....|..+......+|...++-..|+.++ ...+.||..... ++...++......-.+.+++|. +-+.++|+|++
T Consensus 30 ~~~~~~~~~k~~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s 107 (839)
T KOG0269|consen 30 PYDKMNCKLKAKANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCS 107 (839)
T ss_pred cchheeeecccccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeec
Confidence 34557777778899999999999999988 678888876643 2222233222112356678885 56889999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCCC
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~ 1176 (1344)
.+|.|.+||+... ....+. ..+..|...+.+ ++|++...+ |++|+.||.|++||++..+ -..++.+..++
T Consensus 108 ~nG~i~vWdlnk~-~rnk~l---~~f~EH~Rs~~~----ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSES 178 (839)
T KOG0269|consen 108 TNGVISVWDLNKS-IRNKLL---TVFNEHERSANK----LDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSES 178 (839)
T ss_pred CCCcEEEEecCcc-ccchhh---hHhhhhccceee----eeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchh
Confidence 9999999999653 222222 357899999988 999887655 5566799999999999988 78888887776
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
|..+.+.+..++.|+++...|.+++||+|..+.... .+..|.+.|.++.|+|+ +.+||||+.|+.|+|||+.+.
T Consensus 179 -iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---k~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 179 -IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---KLTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred -hhceeeccCCCceEEEecCCceEEEeeccCchhHHH---HhhcccCceEEEeecCC--CceeeecCCCccEEEEeccCC
Confidence 999988888899999999999999999998875544 34578899999999998 999999999999999999865
Q ss_pred c-cceEEEecCCCCeEEEEEcCCCC-EEEEEe--CCCeEEEEeCCCce--EEEEeccCCccccccCCCeEEEEEec-CCC
Q 000700 1257 K-DAYLTIDAHRGSLSALAVHRHAP-IIASGS--AKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHP-YQV 1329 (1344)
Q Consensus 1257 ~-~~v~tl~~h~~~Vtsla~spdg~-~LasgS--~Dg~I~Iwd~~g~~--l~~l~~~h~~f~~~~~~~V~slafsp-dg~ 1329 (1344)
. .+..++. ...+|.++.|-|..+ .||+++ .|-.|+|||+.... ..++.. |+ ..++.++|-. |..
T Consensus 253 ~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~-------~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 253 RAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HT-------DSVTGIAWDSGDRI 323 (839)
T ss_pred CccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cC-------ccccceeccCCCce
Confidence 3 3444444 356899999999876 566664 47889999976543 345555 55 7899999954 457
Q ss_pred EEEEEECCCeEE
Q 000700 1330 LLAAGSADACVS 1341 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~ 1341 (1344)
.|.+++.||+|.
T Consensus 324 ~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 324 NLWSCSKDGTVL 335 (839)
T ss_pred eeEeecCccHHH
Confidence 899999999763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=208.93 Aligned_cols=239 Identities=16% Similarity=0.281 Sum_probs=198.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
...+.++.|-.||++|++|+..|.|+|+|.++...+..+.+|. .+|..+.|. ..++..+++|++|+.+++||+.+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~---apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~- 142 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ---APVHVTKFS-PQDNTMLVSGSDDKVVKYWDLST- 142 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc---CceeEEEec-ccCCeEEEecCCCceEEEEEcCC-
Confidence 3579999999999999999999999999988777888899999 899999995 35778899999999999999976
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCe-EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
.... ..+.+|+.-|++ .+|+|..++ +++||.||.|++||++.....+.++.. +.+|.++ .+-+.|.
T Consensus 143 -a~v~-----~~l~~htDYVR~----g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh--g~pVe~v-l~lpsgs 209 (487)
T KOG0310|consen 143 -AYVQ-----AELSGHTDYVRC----GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH--GCPVESV-LALPSGS 209 (487)
T ss_pred -cEEE-----EEecCCcceeEe----eccccCCCeEEEecCCCceEEEEEeccCCceeEEecC--CCceeeE-EEcCCCC
Confidence 2222 348999999999 788887775 556679999999999987425555543 5569999 4556778
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
+|++++. ..|++||+-++......+ ..|...|+|+.+..+ +..|++|+-||.|++||+.+. +.+..+. ..++
T Consensus 210 ~iasAgG-n~vkVWDl~~G~qll~~~---~~H~KtVTcL~l~s~--~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~-~~~p 281 (487)
T KOG0310|consen 210 LIASAGG-NSVKVWDLTTGGQLLTSM---FNHNKTVTCLRLASD--STRLLSGSLDRHVKVFDTTNY-KVVHSWK-YPGP 281 (487)
T ss_pred EEEEcCC-CeEEEEEecCCceehhhh---hcccceEEEEEeecC--CceEeecccccceEEEEccce-EEEEeee-cccc
Confidence 8888764 579999999776555433 247799999999988 899999999999999998877 7777776 4779
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
|.+++++|++..++.|-.||.+.+=+
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeeh
Confidence 99999999999999999999988775
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=209.60 Aligned_cols=293 Identities=19% Similarity=0.301 Sum_probs=222.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.|.+.|.+|..+|.|.+|++|++||+|+||.+.+|.++.++.... .|.+++|.+.++-.+|+++-.+. +.|-+..
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 466889999999999999999999999999999999999988655 89999996555556666665554 4444432
Q ss_pred CCC------Cc---------ee---EEeee------------ecccCCCCCccccceEEEEecCCCeEEEEE---CCCeE
Q 000700 1109 DQK------DK---------QK---LVTAF------------SSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSI 1155 (1344)
Q Consensus 1109 ~~~------~~---------~~---lvs~~------------~~l~~h~~~V~s~~~~v~ws~~~~~Llagg---~Dg~I 1155 (1344)
-+. .. .+ .+..| ...-.|...|+. +.|+..|.+|++.. ....|
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~----vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ----VTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce----eeeecCCceEEEeccCCCcceE
Confidence 110 00 00 00011 112235556666 89999999999884 34679
Q ss_pred EEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~ 1235 (1344)
.|+++.... ....+....+. |.++ .|+|...+|++++. ..|++||+.... +++.+.+. ..+|.+++++|.
T Consensus 549 liHQLSK~~-sQ~PF~kskG~-vq~v-~FHPs~p~lfVaTq-~~vRiYdL~kqe-lvKkL~tg---~kwiS~msihp~-- 618 (733)
T KOG0650|consen 549 LIHQLSKRK-SQSPFRKSKGL-VQRV-KFHPSKPYLFVATQ-RSVRIYDLSKQE-LVKKLLTG---SKWISSMSIHPN-- 618 (733)
T ss_pred EEEeccccc-ccCchhhcCCc-eeEE-EecCCCceEEEEec-cceEEEehhHHH-HHHHHhcC---CeeeeeeeecCC--
Confidence 999998877 55555544444 8888 56666666666654 579999998765 55444333 378999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--C-----CC---ceEEEEe
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--L-----EG---EQLGTIR 1305 (1344)
Q Consensus 1236 g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~-----~g---~~l~~l~ 1305 (1344)
|..|+.|+.|+.+..||+.-..++.++++.|...+++++||+.-++||+|+.||++.||- + .. -++..++
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 999999999999999999988789999999999999999999999999999999999885 1 12 2345566
Q ss_pred ccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1306 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1306 ~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+ |. ......|..+.|||...+|.+++.||+|++|.
T Consensus 699 g-H~---~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 699 G-HE---KTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred C-ce---eecccceEeecccCCCceEEecCCCceEEeeC
Confidence 6 54 12335688999999999999999999999994
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=193.00 Aligned_cols=260 Identities=15% Similarity=0.261 Sum_probs=201.4
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1025 ~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
..+..|.+-|..+...-.|+.|||++.|++|+|+....+ +.+.++.+|. ++|..++|.+..-|.+|++++.||.
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCce
Confidence 356677788888888899999999999999999998754 5788899999 9999999976668999999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC--CCeEEEEECCCeEEEEECCCC-ceeeeee-cCCCCCC
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKE-QQMVNPI-PSSSDCS 1177 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~--~~~Llagg~Dg~I~VWDl~~~-~~~v~~i-~~~~~~~ 1177 (1344)
|.||+-.. +..... .....|...|++ ++|.|. +-.|++++.||.|.|.+.+.. ......+ ..|.- .
T Consensus 82 VIiWke~~--g~w~k~---~e~~~h~~SVNs----V~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-G 151 (299)
T KOG1332|consen 82 VIIWKEEN--GRWTKA---YEHAAHSASVNS----VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-G 151 (299)
T ss_pred EEEEecCC--Cchhhh---hhhhhhccccee----ecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-c
Confidence 99999765 322221 346788999998 676554 567788899999999998765 2123333 34544 4
Q ss_pred eeEEEEEcCC--C-----------CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEE
Q 000700 1178 ISALTASQVH--G-----------GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSA 1242 (1344)
Q Consensus 1178 VtsL~~~s~d--g-----------~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~--~~g~~Lasg 1242 (1344)
|+++++.+.. | ..|++|+.|..|+||+..... ...-+.+.+|..+|+.++|.|. .....|+++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 8999554321 2 569999999999999998763 2222246789999999999998 224579999
Q ss_pred ECCCcEEEEECCCCccc--eEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--CCCc
Q 000700 1243 SQAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGE 1299 (1344)
Q Consensus 1243 s~DG~I~IWDlr~~~~~--v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~~g~ 1299 (1344)
++||+|.||..+...++ ...++.....++.+.|+..|.+|+.++.|+.|.+|. .+|+
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 99999999988743222 222333467899999999999999999999999997 4454
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=217.62 Aligned_cols=222 Identities=13% Similarity=0.171 Sum_probs=170.1
Q ss_pred EECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC-CCeEEEEECCCeEEEEECCCCc-------eee
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQ-------QMV 1167 (1344)
Q Consensus 1096 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~Llagg~Dg~I~VWDl~~~~-------~~v 1167 (1344)
|+.+|.|++|+... . ..+ ..+.+|...|.+ ++|+|+ +..|++|+.||.|++||+.++. .++
T Consensus 50 GG~~gvI~L~~~~r--~--~~v---~~L~gH~~~V~~----lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMR--K--PPV---IKLKGHTSSILD----LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCC--C--ceE---EEEcCCCCCEEE----EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence 66788999999754 1 122 457899999988 999997 6788899999999999997642 023
Q ss_pred eeecCCCCCCeeEEEEEcCCCCE-EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC
Q 000700 1168 NPIPSSSDCSISALTASQVHGGQ-LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1246 (1344)
Q Consensus 1168 ~~i~~~~~~~VtsL~~~s~dg~~-L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG 1246 (1344)
..+.+|... |.++ .++|++.. +++|+.||+|++||+++++. ...+ .|...|.+++|+|+ |.+|++++.|+
T Consensus 119 ~~L~gH~~~-V~sV-af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i----~~~~~V~Slswspd--G~lLat~s~D~ 189 (568)
T PTZ00420 119 CILKGHKKK-ISII-DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQI----NMPKKLSSLKWNIK--GNLLSGTCVGK 189 (568)
T ss_pred EEeecCCCc-EEEE-EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEE----ecCCcEEEEEECCC--CCEEEEEecCC
Confidence 456667655 9999 66777764 57899999999999998873 3333 13468999999999 99999999999
Q ss_pred cEEEEECCCCccceEEEecCCCCeEEE-----EEcCCCCEEEEEeCCC----eEEEEeCC--CceEEEEeccCCcccccc
Q 000700 1247 DIQFLDIRNHKDAYLTIDAHRGSLSAL-----AVHRHAPIIASGSAKQ----LIKVFSLE--GEQLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1247 ~I~IWDlr~~~~~v~tl~~h~~~Vtsl-----a~spdg~~LasgS~Dg----~I~Iwd~~--g~~l~~l~~~h~~f~~~~ 1315 (1344)
.|+|||++++ ..+.++.+|.+.+.+. .|++++.+|++++.|+ .|+|||+. ++.+..+.. +. +
T Consensus 190 ~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~-----~ 262 (568)
T PTZ00420 190 HMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DN-----A 262 (568)
T ss_pred EEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cC-----C
Confidence 9999999998 7888999998765433 3458888888887764 79999965 455655543 22 2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.+......+++.++++|+.|+.|++|+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 24444455566789999999999999995
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=191.18 Aligned_cols=249 Identities=15% Similarity=0.248 Sum_probs=198.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-----CeEEE
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIRI 1104 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~IrI 1104 (1344)
|...|.|+..+-+.+++++|+.|.++++||+++|+.+..++... .|..+.| +.+|++++...++ +.|.+
T Consensus 51 HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~----~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 51 HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS----PVKRVDF--SFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC----eeEEEee--ccCCcEEEEEehhhcCcceEEEE
Confidence 45789999999999999999999999999999999999998766 8999999 7888888877654 67999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
+|+........-..++..+..+...++. +-|.+-+..|++|..||.|.+||++++...+.....|... |+.| .+
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~----a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-Ind~-q~ 198 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITS----ALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-INDL-QF 198 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceee----eeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-cccc-cc
Confidence 9997533221112223345666666666 8899999999999999999999999986355666666664 9999 78
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCC-cEEEEECCCCc-----
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAG-DIQFLDIRNHK----- 1257 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs-~DG-~I~IWDlr~~~----- 1257 (1344)
+++..+|++|+.|.+-++||.++-+ +.+++... .+|++.+++|. ...++.|+ .+- .|.-=+.+.++
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te----~PvN~aaisP~--~d~VilgGGqeA~dVTTT~~r~GKFEArF 271 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE----RPVNTAAISPL--LDHVILGGGQEAMDVTTTSTRAGKFEARF 271 (327)
T ss_pred cCCcceEEecccCccceeeecccee-eEEEeeec----ccccceecccc--cceEEecCCceeeeeeeecccccchhhhH
Confidence 8999999999999999999999987 67776544 68999999998 55655554 321 12222222221
Q ss_pred ------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1258 ------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1258 ------~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
+.+..+++|-++|++++|||+|+..++|+.||.|++.-++
T Consensus 272 yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 272 YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 5667888999999999999999999999999999998644
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=192.12 Aligned_cols=242 Identities=17% Similarity=0.294 Sum_probs=196.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
..|...|++++.+ ++++|+|+.|.+|+|||+.+...+..+-.|. +.|+++.|........|++|++||.|.+|+.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 3467889999984 8999999999999999999999999999998 9999999943223348999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
+..+++ ..+++|...|+. ++.+|.+..-++.|.|+.++.||+-++. .-...+-.+. -+.+ .|.+.
T Consensus 115 ----~~W~~~---~slK~H~~~Vt~----lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~~~--at~v-~w~~~ 179 (362)
T KOG0294|consen 115 ----GSWELL---KSLKAHKGQVTD----LSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLKNK--ATLV-SWSPQ 179 (362)
T ss_pred ----CCeEEe---eeecccccccce----eEecCCCceEEEEcCCceeeeehhhcCc-cceeeccCCc--ceee-EEcCC
Confidence 455666 678899999998 8999999988899999999999999887 4444443333 2446 56789
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
|.+|+.+..+ .|-+|.+.+.. +.... .. ...+.++.|- ++..+++|..|+.|.+||.... .+...+.+|.
T Consensus 180 Gd~F~v~~~~-~i~i~q~d~A~-v~~~i-~~---~~r~l~~~~l---~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~ 249 (362)
T KOG0294|consen 180 GDHFVVSGRN-KIDIYQLDNAS-VFREI-EN---PKRILCATFL---DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHE 249 (362)
T ss_pred CCEEEEEecc-EEEEEecccHh-Hhhhh-hc---cccceeeeec---CCceEEEecCCceEEEeccCCC-ccceeeecch
Confidence 9999988876 48899887665 33222 11 1446666664 4789999999999999999986 8999999999
Q ss_pred CCeEEEEE--cCCCCEEEEEeCCCeEEEEeCCCc
Q 000700 1268 GSLSALAV--HRHAPIIASGSAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1268 ~~Vtsla~--spdg~~LasgS~Dg~I~Iwd~~g~ 1299 (1344)
..|-++.+ .|++.+|+|+|.||.|+|||++.+
T Consensus 250 ~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999985 456789999999999999997644
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-19 Score=210.63 Aligned_cols=288 Identities=15% Similarity=0.241 Sum_probs=226.8
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1032 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1032 ~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
++|+.++|.-||+ ++|+|+..|.+.+||++..+.+.... .|. +.|+...|. +....+++++.|+.+++|=...
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~---~sv~~~~fl--~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY---GSVTGATFL--PGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc---CCcccceec--CCCceEeeccCCCceeEEEeeC
Confidence 7899999999998 67778888999999999888887776 676 789999994 5788999999999888885442
Q ss_pred CCCceeEEee-----------------------------eec--------------------------------------
Q 000700 1110 QKDKQKLVTA-----------------------------FSS-------------------------------------- 1122 (1344)
Q Consensus 1110 ~~~~~~lvs~-----------------------------~~~-------------------------------------- 1122 (1344)
.++.+.+... ++.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 2221111000 000
Q ss_pred ---------------ccCCCCC-------------------------ccccceEEEEecCCCeEEEEECCCeEEEEECCC
Q 000700 1123 ---------------IQGHKPG-------------------------VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK 1162 (1344)
Q Consensus 1123 ---------------l~~h~~~-------------------------V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~ 1162 (1344)
+..|.+. .-....+++.++.|+..+.|...|.|-+|++.+
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS 479 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS 479 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc
Confidence 0000000 001123456666778888888899999999999
Q ss_pred Cceeeeee---cCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000700 1163 EQQMVNPI---PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1239 (1344)
Q Consensus 1163 ~~~~v~~i---~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~L 1239 (1344)
+- ....+ +.|.. +|+++ ..+..++.+++++.+|.+++||..+.. ....++. ...++++..+.. ...+
T Consensus 480 Gi-~r~sf~~~~ah~~-~V~gl-a~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l----~~~~~~iv~hr~--s~l~ 549 (910)
T KOG1539|consen 480 GI-HRKSFGDSPAHKG-EVTGL-AVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL----GSSITGIVYHRV--SDLL 549 (910)
T ss_pred Ce-eecccccCccccC-ceeEE-EecCCCceEEEccCcceEEEEecCCcc-eeeeecc----CCCcceeeeeeh--hhhh
Confidence 88 66676 34544 59999 666778899999999999999998877 5555532 267888999988 8899
Q ss_pred EEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCC
Q 000700 1240 VSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGS 1318 (1344)
Q Consensus 1240 asgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~ 1318 (1344)
+.+..|-.|+++|..+. +.++.+.+|.+.|+.++|||+|++|++++.|++|++|| .++..+..+.. ..+
T Consensus 550 a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d~~ 619 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSP 619 (910)
T ss_pred hhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---------CCc
Confidence 99999999999999987 89999999999999999999999999999999999999 67888887765 268
Q ss_pred eEEEEEecCCCEEEEEECC-CeEEEcC
Q 000700 1319 VNCLTFHPYQVLLAAGSAD-ACVSIHS 1344 (1344)
Q Consensus 1319 V~slafspdg~~Lasgs~D-g~I~IWd 1344 (1344)
..++.|+|+|.+|||...| .-|++|.
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999998 6799883
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=209.54 Aligned_cols=249 Identities=18% Similarity=0.322 Sum_probs=203.1
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
....+..|. +.+..+.| -++...|++|+.|..|++|+... ++.+++ .++.+..+.+.. ++|.+++.
T Consensus 167 ~~~~ld~h~---gev~~v~~--l~~sdtlatgg~Dr~Ik~W~v~~--~k~~~~---~tLaGs~g~it~----~d~d~~~~ 232 (459)
T KOG0288|consen 167 ALFVLDAHE---GEVHDVEF--LRNSDTLATGGSDRIIKLWNVLG--EKSELI---STLAGSLGNITS----IDFDSDNK 232 (459)
T ss_pred hhhhhhccc---cccceeEE--ccCcchhhhcchhhhhhhhhccc--chhhhh---hhhhccCCCcce----eeecCCCc
Confidence 344566777 88999999 56779999999999999999976 334444 567788888888 89999999
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1145 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
++++++.|+.+++|++.... ...++.+|.+. |+++.+... ...+++|+.|.+|++||+.... +.+..-. .+.
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r-~~~TLsGHtdk-Vt~ak~~~~-~~~vVsgs~DRtiK~WDl~k~~-C~kt~l~----~S~ 304 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLR-LRHTLSGHTDK-VTAAKFKLS-HSRVVSGSADRTIKLWDLQKAY-CSKTVLP----GSQ 304 (459)
T ss_pred eEEeecCCCceeeeeccchh-hhhhhcccccc-eeeehhhcc-ccceeeccccchhhhhhhhhhh-eeccccc----ccc
Confidence 99999999999999999998 89999998887 999966543 3349999999999999999866 3333312 255
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEE
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTI 1304 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l 1304 (1344)
+..|... ...+++|..|++|++||++.. .+..+...+. .|+++..++++..+.+++.|.++++.|+.+..+...
T Consensus 305 cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 305 CNDIVCS----ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred ccceEec----ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 6667665 347899999999999999998 7888888765 899999999999999999999999999877655543
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1305 ~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.. -.+|... ...+.+.|||++.|+|+||.||.|+||+
T Consensus 379 ~s-A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 379 FS-AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred ee-ccccccc--cccceeEECCCCceeeeccCCCcEEEEE
Confidence 32 3334332 3488999999999999999999999996
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=201.36 Aligned_cols=249 Identities=20% Similarity=0.363 Sum_probs=193.2
Q ss_pred EEEEEEee-----CCCCEEEEEECCCeEEEEeccCCCCceeEE--------------eeeecccCCCCCccccceEEEEe
Q 000700 1080 SKLCLVNE-----LDVSLLLVASCNGNIRIWKDYDQKDKQKLV--------------TAFSSIQGHKPGVRCSNVVVDWQ 1140 (1344)
Q Consensus 1080 tsL~f~ns-----~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv--------------s~~~~l~~h~~~V~s~~~~v~ws 1140 (1344)
.|++|++. ..|++++.|+.|..|.|||+.--+.....+ ..-..-.+|+..|-. +.|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~----Ls~n 252 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA----LSWN 252 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH----HHhc
Confidence 56677543 246799999999999999985311100000 000112356655555 6776
Q ss_pred cCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC
Q 000700 1141 QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1219 (1344)
Q Consensus 1141 ~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~ 1219 (1344)
..- +.|++||.|.+|++||+.+++ +..++..|.+ .|.++.|++..+..+++|+.||+|.++|.|.....-..|+..
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k-~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~- 329 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGK-KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD- 329 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCC-cceehhhcCC-ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-
Confidence 554 456666899999999999999 8888885555 599999988899999999999999999999655445555332
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 000700 1220 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1220 ~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~g 1298 (1344)
+.|-.++|.|. ....+++++.||+|+-+|+|..++++.++++|.++|++++++...+ ++++++.|+.|++|++.+
T Consensus 330 ---g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 330 ---GEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ---cceEEEEecCC-CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 78999999998 6778899999999999999999899999999999999999998766 788999999999999877
Q ss_pred ceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1299 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1299 ~~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
..-..... |.- ..+...|+++.|+- -.||.||..+.++|||
T Consensus 406 ~~~~~v~~-~~~----~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 406 DSPKSVKE-HSF----KLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred CCCccccc-ccc----cccceeecccCCCcceEEEecCccceEEEee
Confidence 66655555 542 22457888888887 5688888888999997
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=213.52 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=198.8
Q ss_pred eCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCC--c
Q 000700 1087 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKE--Q 1164 (1344)
Q Consensus 1087 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~--~ 1164 (1344)
-+.+++|+|||.||.|++|++....+..... ....+..|...|+.+.++ .+++.+++++.|-+|++|+.... -
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~----~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILC----GNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhh----cCCCceEEecCCceEEEeecccCcch
Confidence 3677899999999999999997644432111 124577899999985543 46779999999999999999887 5
Q ss_pred eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-eeEee-----cCC-CCCCCCeEEEEEecCCCCC
Q 000700 1165 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCST-----RPH-TQQVERVVGISFQPGLDPA 1237 (1344)
Q Consensus 1165 ~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~-~v~~~-----~~~-~~h~~~I~sva~sp~~~g~ 1237 (1344)
|..++..|.+. |.|++..-.+..++++|+-|+.|.+||+.++.. .+..+ ... .|+...|.+++..+. |.
T Consensus 109 -c~stir~H~DY-Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t 184 (735)
T KOG0308|consen 109 -CMSTIRTHKDY-VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GT 184 (735)
T ss_pred -hHhhhhcccch-heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc--ce
Confidence 88899999887 999965577889999999999999999997632 11111 112 278899999999998 99
Q ss_pred EEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccC
Q 000700 1238 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKI 1316 (1344)
Q Consensus 1238 ~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~ 1316 (1344)
.|++|+.++.+++||.++. +.+..+++|...|..+..+++|..++++|.||+|++||+. .+++.++.. |.
T Consensus 185 ~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~------- 255 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HK------- 255 (735)
T ss_pred EEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-cc-------
Confidence 9999999999999999998 7888899999999999999999999999999999999964 577888887 66
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1317 GSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1317 ~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
..|+++.-+|+=..+.+|+.||.|..
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEe
Confidence 66999999999999999999998864
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=210.72 Aligned_cols=277 Identities=13% Similarity=0.191 Sum_probs=215.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|..+-+.++|.|+|++|++++.||.|++|+..+. +.-..+..+. ..|.+++. ++.+|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---~~v~~ia~----~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG---ELVSSIAC----YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC---ceeEEEee----cccceEEeeccceEEEeeC
Confidence 35678999999999999999999999999987655 3334444344 67777775 6679999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. +...-+ +.....++++ ++++.+|..+++||+|-.|++-+..... ....+++|... |.++ .++|.
T Consensus 84 ps--~~~~~i-----L~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~ap-Vl~l-~~~p~ 149 (933)
T KOG1274|consen 84 PS--GEEDTI-----LARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAP-VLQL-SYDPK 149 (933)
T ss_pred CC--CCccce-----eeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCc-eeee-eEcCC
Confidence 76 222211 2334455666 8899999999999999999999999988 78888888765 9999 67889
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCC-----CCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEE
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ-----QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~-----h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~t 1262 (1344)
+++|++.+.||.|++||+.++. +...+..... ....+..++|+|+ |..++..+.|+.|++|+..++ .....
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk--~g~la~~~~d~~Vkvy~r~~w-e~~f~ 225 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPK--GGTLAVPPVDNTVKVYSRKGW-ELQFK 225 (933)
T ss_pred CCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCC--CCeEEeeccCCeEEEEccCCc-eehee
Confidence 9999999999999999999876 3333322111 1345778999999 888888889999999999988 66655
Q ss_pred Eec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeE
Q 000700 1263 IDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1340 (1344)
Q Consensus 1263 l~~--h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I 1340 (1344)
+.. +...++.++|+|+|.|||+++.||.|.|||.+.... |. ....|.+++|.|+...+-.-...|..
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~-----~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE-----FKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc-----ccceeEEEecCCCCCeeEEEeecccc
Confidence 553 344599999999999999999999999999765222 22 12689999999998766555444444
Q ss_pred E
Q 000700 1341 S 1341 (1344)
Q Consensus 1341 ~ 1341 (1344)
.
T Consensus 295 ~ 295 (933)
T KOG1274|consen 295 G 295 (933)
T ss_pred c
Confidence 3
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=190.02 Aligned_cols=259 Identities=13% Similarity=0.228 Sum_probs=203.5
Q ss_pred EEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1046 VVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1046 Latgs~dg~I~VWd~~tg------------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
+++|+....|.-+++.-. ..+..+..|. +.|++++. ++.++++||.|.+|+|||+.....-
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~---~sitavAV----s~~~~aSGssDetI~IYDm~k~~ql 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHA---GSITALAV----SGPYVASGSSDETIHIYDMRKRKQL 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccc---cceeEEEe----cceeEeccCCCCcEEEEeccchhhh
Confidence 566666666655554311 2245577888 89999999 7899999999999999999662211
Q ss_pred eeEEeeeecccCCCCCccccceEEEEecCCC--eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEE
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1191 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~--~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L 1191 (1344)
..+-.|.+.|++ +.|.+... +|++|++||.|.+|+...-. ++..++.|... |+.+ ..+|.+++-
T Consensus 77 -------g~ll~Hagsita----L~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~-Vt~l-siHPS~KLA 142 (362)
T KOG0294|consen 77 -------GILLSHAGSITA----LKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQ-VTDL-SIHPSGKLA 142 (362)
T ss_pred -------cceeccccceEE----EEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccccc-ccee-EecCCCceE
Confidence 346678888888 67766554 89999999999999999998 99999999888 9999 778999999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeE
Q 000700 1192 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1271 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vt 1271 (1344)
++.+.|+.++.||+-.++.. ... .+. ..-+.|.|+|. |.+++.++.+ .|-+|.+.+. .....+.. ...+.
T Consensus 143 LsVg~D~~lr~WNLV~Gr~a-~v~-~L~---~~at~v~w~~~--Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~~-~~r~l 212 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGRVA-FVL-NLK---NKATLVSWSPQ--GDHFVVSGRN-KIDIYQLDNA-SVFREIEN-PKRIL 212 (362)
T ss_pred EEEcCCceeeeehhhcCccc-eee-ccC---CcceeeEEcCC--CCEEEEEecc-EEEEEecccH-hHhhhhhc-cccce
Confidence 99999999999999877632 222 221 33445999998 9988888876 6889999876 44444442 24466
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEE--ecCCCEEEEEECCCeEEEcC
Q 000700 1272 ALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF--HPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1272 sla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slaf--spdg~~Lasgs~Dg~I~IWd 1344 (1344)
++.|- ++..+++|+.|+.|++||.+ +..+..+.. |. .+|.++.+ .|++.+|+|+|+||.|+|||
T Consensus 213 ~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~-------~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 213 CATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-HE-------NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeeec-CCceEEEecCCceEEEeccCCCccceeeec-ch-------hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 66665 56789999999999999966 777888887 76 78999885 57789999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=177.32 Aligned_cols=249 Identities=19% Similarity=0.354 Sum_probs=195.2
Q ss_pred ccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--cE---EEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEE-C
Q 000700 1027 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED--TL---LNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS-C 1098 (1344)
Q Consensus 1027 d~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg--~~---l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs-~ 1098 (1344)
+..|...|.|.+|+|+|++|++|+.|.+|++.-.+.. +. -..|..|. +.|.+++|...+ .+.+|++++ .
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd---gtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD---GTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecC---CceeeeEEecCCCcCceEEEecCCC
Confidence 4456788999999999999999999999999755432 21 23466777 899999997443 345666554 2
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-----
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS----- 1173 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~----- 1173 (1344)
|..|.+-|... +. .++.+.+|.+-|.+ ...|+ +-.+++|+.|.+|++||++-.. ++.++...
T Consensus 162 dc~iy~tdc~~--g~-----~~~a~sghtghila---lyswn--~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 162 DCKIYITDCGR--GQ-----GFHALSGHTGHILA---LYSWN--GAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGG 228 (350)
T ss_pred cceEEEeecCC--CC-----cceeecCCcccEEE---EEEec--CcEEEccCCCceEEEEeeeccc-eeeeccCcccCCC
Confidence 44455545433 32 23568899888776 35674 6778888899999999999988 88877532
Q ss_pred -CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000700 1174 -SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1252 (1344)
Q Consensus 1174 -~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWD 1252 (1344)
..+.|.++ ..+|.|+++++|-.|.+..+||+|.+. +++.+. .|...|.++.|+|. ..++++++.|..|++-|
T Consensus 229 lessavaav-~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~---phsadir~vrfsp~--a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 229 LESSAVAAV-AVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFH---PHSADIRCVRFSPG--AHYLLTCSYDMKIKLTD 301 (350)
T ss_pred cccceeEEE-EECCCcceeeeccCCCceEEEEeeCCc-eeeeeC---CCccceeEEEeCCC--ceEEEEecccceEEEee
Confidence 23468888 778999999999999999999999998 666554 56699999999999 99999999999999999
Q ss_pred CCCCc---cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1253 IRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1253 lr~~~---~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
+...- -++.....|+..+-.+.|||..--+++.+.|+++.+|-+.+
T Consensus 302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred cccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 98431 34556667999999999999998999999999999997653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=217.67 Aligned_cols=243 Identities=21% Similarity=0.356 Sum_probs=186.5
Q ss_pred eEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC-CCeEEEEECCCeEEE
Q 000700 1079 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIML 1157 (1344)
Q Consensus 1079 ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~Llagg~Dg~I~V 1157 (1344)
..+|.. .++-..++.++.. .++||.+........+.-.++.-+....... .+.|.+- .++|++++..|.|.+
T Consensus 42 ~nAIs~--nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~----DVkW~~~~~NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 42 ANAISV--NRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAA----DVKWGQLYSNLIATCSTNGVISV 114 (839)
T ss_pred cceEee--cCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehh----hcccccchhhhheeecCCCcEEE
Confidence 345554 3566666666654 6778877654444333322211111112222 3778754 566777789999999
Q ss_pred EECCC---CceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1158 WDLEK---EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1158 WDl~~---~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
||+.. .. .+..+..|..+ |+++.+.+...++|++|+.||.|++||+|..+. ..++ .+....|..|.|+|.
T Consensus 115 Wdlnk~~rnk-~l~~f~EH~Rs-~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~---~~nSESiRDV~fsp~- 187 (839)
T KOG0269|consen 115 WDLNKSIRNK-LLTVFNEHERS-ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTF---RSNSESIRDVKFSPG- 187 (839)
T ss_pred EecCccccch-hhhHhhhhccc-eeeeeeccCCccEEEecCCCceEEEEeeecccc-cccc---cccchhhhceeeccC-
Confidence 99987 44 66778888877 999988888999999999999999999998873 3333 245588999999998
Q ss_pred CCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc---eEEEEeccCCcc
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE---QLGTIRYHHPSF 1311 (1344)
Q Consensus 1235 ~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~---~l~~l~~~h~~f 1311 (1344)
.+.+++++...|.+++||+|....+...+.+|.++|.|+.|||++.+|||||.|+.|+|||.++. .+.++. +
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn---T-- 262 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN---T-- 262 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe---e--
Confidence 79999999999999999999988899999999999999999999999999999999999997643 233332 2
Q ss_pred ccccCCCeEEEEEecCCC-EEEEEEC--CCeEEEcC
Q 000700 1312 MAQKIGSVNCLTFHPYQV-LLAAGSA--DACVSIHS 1344 (1344)
Q Consensus 1312 ~~~~~~~V~slafspdg~-~Lasgs~--Dg~I~IWd 1344 (1344)
..+|.+++|-|... .||+++. |-.|+|||
T Consensus 263 ----iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 263 ----IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred ----cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 47899999999985 5777765 88999997
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=207.35 Aligned_cols=274 Identities=15% Similarity=0.252 Sum_probs=213.5
Q ss_pred EEEEEECCCcEEEEECCCC---cEEEE--ee---------C------C--------------CCCCCCeEEEEEEeeCCC
Q 000700 1045 IVVAADENERIKIWNYEED---TLLNS--FD---------N------H--------------DFPDKGISKLCLVNELDV 1090 (1344)
Q Consensus 1045 ~Latgs~dg~I~VWd~~tg---~~l~~--~~---------~------h--------------~~~~~~ItsL~f~ns~d~ 1090 (1344)
.++|++.||+|++||++.+ ...+. +. . | -.+..++.+++. +|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--Sp~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--SPDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--CCCc
Confidence 5889999999999999853 11110 00 0 0 011247899999 8999
Q ss_pred CEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC---CCeEEEEECCCeEEEEECCCCceee
Q 000700 1091 SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQQMV 1167 (1344)
Q Consensus 1091 ~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~---~~~Llagg~Dg~I~VWDl~~~~~~v 1167 (1344)
++|++|..-|+++||++..... . -.+..|...|.+ +.|+.. ...|++++.|+-|.|||+.++-..+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~--~-----~~~eAHesEilc----LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~ 540 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEY--T-----CFMEAHESEILC----LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV 540 (1080)
T ss_pred ceecccCccCceEEEEehhhhh--h-----hheecccceeEE----EeecCchhhhHhhhhccCCceEEEEecccccchh
Confidence 9999999999999999965211 1 235788888887 777643 4567778999999999998776477
Q ss_pred eeecCCCCCCeeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCeeeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000700 1168 NPIPSSSDCSISALTASQVHG-GQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQ 1244 (1344)
Q Consensus 1168 ~~i~~~~~~~VtsL~~~s~dg-~~L~sGs~DGsVrIwDlr~~~~~v~~~~--~~~~h~~~I~sva~sp~~~g~~Lasgs~ 1244 (1344)
+++.+|..+ |+++.+.-.++ ..+++++.|..|.+ +..........+. .+.-.+..+..+++.|. .+++++++.
T Consensus 541 qtld~HSss-ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQ 616 (1080)
T KOG1408|consen 541 QTLDGHSSS-ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQ 616 (1080)
T ss_pred hhhcccccc-eeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCC--cceEEEEec
Confidence 888888877 99996654443 56888888988754 3332111111111 12223467899999999 999999999
Q ss_pred CCcEEEEECCCCccceEEEec---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeE
Q 000700 1245 AGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVN 1320 (1344)
Q Consensus 1245 DG~I~IWDlr~~~~~v~tl~~---h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~ 1320 (1344)
|..|+|||+.++ +..+.|++ |++..-.+...|.|-++|+...|+++.++| .+|+.+....+ |. ..|+
T Consensus 617 Drnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-Hs-------E~VT 687 (1080)
T KOG1408|consen 617 DRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HS-------EAVT 687 (1080)
T ss_pred ccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cc-------hhee
Confidence 999999999998 78888875 667889999999999999999999999999 78999999988 76 8899
Q ss_pred EEEEecCCCEEEEEECCCeEEEcC
Q 000700 1321 CLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1321 slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.|.+|-+.|++.+.||.|.||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE
Confidence 999999999999999999999994
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=201.04 Aligned_cols=297 Identities=18% Similarity=0.216 Sum_probs=227.8
Q ss_pred cCCcccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEE-EeeCCCCCCCCeEEEEEEeeCCCCEEEEEE
Q 000700 1019 LNNPIACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN-SFDNHDFPDKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1019 l~~~i~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~-~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
+....+++-.-...+|.+++|+...+.||++-.+|+|.||++..+-... .+.+ ++.+.|.+++|. ++..|.+.+
T Consensus 13 m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g--~~drsIE~L~W~---e~~RLFS~g 87 (691)
T KOG2048|consen 13 MQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG--PEDRSIESLAWA---EGGRLFSSG 87 (691)
T ss_pred eEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec--CCCCceeeEEEc---cCCeEEeec
Confidence 3333444544557899999999999999999999999999998764433 3444 345899999993 788999999
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCCCC
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDC 1176 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i-~~~~~~ 1176 (1344)
.+|.|.-||+.+ .++... +....+.|++ ++.++.+..+++|++||.+..++...+. ..... -....+
T Consensus 88 ~sg~i~EwDl~~--lk~~~~-----~d~~gg~IWs----iai~p~~~~l~IgcddGvl~~~s~~p~~-I~~~r~l~rq~s 155 (691)
T KOG2048|consen 88 LSGSITEWDLHT--LKQKYN-----IDSNGGAIWS----IAINPENTILAIGCDDGVLYDFSIGPDK-ITYKRSLMRQKS 155 (691)
T ss_pred CCceEEEEeccc--CceeEE-----ecCCCcceeE----EEeCCccceEEeecCCceEEEEecCCce-EEEEeecccccc
Confidence 999999999977 444332 5566777887 8888999999999999988888887776 43322 233345
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe----ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS----TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1252 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~----~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWD 1252 (1344)
.|.++ .+++++..+++|+.||.|++||...+...... .+..++...-|.++.+-.+ ..|++|...|+|++||
T Consensus 156 RvLsl-sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 156 RVLSL-SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWD 231 (691)
T ss_pred eEEEE-EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEc
Confidence 69999 77899999999999999999999988744311 1111112345677777644 6899999999999999
Q ss_pred CCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEE
Q 000700 1253 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLA 1332 (1344)
Q Consensus 1253 lr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~La 1332 (1344)
...+ ..++.+..|.+.|.+++..+++..+.+++.|+.|.-|..++..-.-+.. +....|...|.+++..++ .|+
T Consensus 232 ~~~g-TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~---~~r~~h~hdvrs~av~~~--~l~ 305 (691)
T KOG2048|consen 232 SIFG-TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN---SRRDLHAHDVRSMAVIEN--ALI 305 (691)
T ss_pred ccCc-chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee---ccccCCcccceeeeeecc--eEE
Confidence 9998 8999999999999999999999999999999999988855432211111 111234578999999877 899
Q ss_pred EEECCCeEEE
Q 000700 1333 AGSADACVSI 1342 (1344)
Q Consensus 1333 sgs~Dg~I~I 1342 (1344)
+||.|.++.+
T Consensus 306 sgG~d~~l~i 315 (691)
T KOG2048|consen 306 SGGRDFTLAI 315 (691)
T ss_pred ecceeeEEEE
Confidence 9999998865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=200.45 Aligned_cols=243 Identities=17% Similarity=0.300 Sum_probs=191.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
..|...+.+++.++||++||+|+.|..|.||+.++.+.++.|.+|. +.|.+++| ......|++++.|+.|++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~f--r~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAF--RKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc---cceeeeee--ecCccceeeeecCCceEEEeh
Confidence 3677889999999999999999999999999999999999999999 99999999 567788999999999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. ...+ .++-+|...|.++ +-...+..+-+|+.|+++++|++..+. ...+.++.++ +-|+++. +
T Consensus 274 ~~----~s~v---etlyGHqd~v~~I----daL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~s-idcv~~I--n 337 (479)
T KOG0299|consen 274 DQ----LSYV---ETLYGHQDGVLGI----DALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGS-IDCVAFI--N 337 (479)
T ss_pred hH----hHHH---HHHhCCccceeee----chhcccceEEeccccceeEEEeccccc--eeeeeCCCCC-eeeEEEe--c
Confidence 54 2222 4578999988873 333345566666799999999996655 4455666555 8888766 4
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCC--------CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc--
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--------QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-- 1257 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~--------~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-- 1257 (1344)
...|++|+.||.|.+|++-..+.+...-..|. ++..||++++..|. .+++++|+.+|.|++|-+..+-
T Consensus 338 ~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~--sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 338 DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG--SDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc--CceEEecCCCCceEEEEecCCccc
Confidence 67899999999999999988774433222221 22349999999998 9999999999999999998773
Q ss_pred -cceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEE
Q 000700 1258 -DAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVF 1294 (1344)
Q Consensus 1258 -~~v~tl~~h~~~Vtsla~spdg~~Lasg-S~Dg~I~Iw 1294 (1344)
.++..+. -.+.|++++|+++|..+++| +....+--|
T Consensus 416 i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 416 INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 3444444 46789999999999966655 444444334
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=184.04 Aligned_cols=292 Identities=14% Similarity=0.233 Sum_probs=215.3
Q ss_pred cccccCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCc----------EEEEe-----eCCCCCCCCeEEEEEEee
Q 000700 1024 ACWDTRFEKGTKTALLQP-FSPIVVAADENERIKIWNYEEDT----------LLNSF-----DNHDFPDKGISKLCLVNE 1087 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fsp-dg~~Latgs~dg~I~VWd~~tg~----------~l~~~-----~~h~~~~~~ItsL~f~ns 1087 (1344)
.++...|++.|.++.+.+ .|+++++|+.||.|.|||++... .+..+ .+|. -.|+++.|.|
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk---y~iss~~WyP- 111 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK---YAISSAIWYP- 111 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce---eeeeeeEEee-
Confidence 456677899999999988 56799999999999999997542 11111 2344 5899999975
Q ss_pred CCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC---CCeEEEEECCCeEEEEECCCCc
Q 000700 1088 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ---SGYLYASGEVSSIMLWDLEKEQ 1164 (1344)
Q Consensus 1088 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~---~~~Llagg~Dg~I~VWDl~~~~ 1164 (1344)
.|..++.+++.|.+++|||..+.+..... ...+.|.+ -+|+|- ...+++|..+-.|++.|+.++.
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--------~me~~VYs----hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDF--------KMEGKVYS----HAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEEe--------ecCceeeh----hhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 57889999999999999999763221111 12333443 444443 2345555678899999999999
Q ss_pred eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec-----------CCCCCCCCeEEEEEecC
Q 000700 1165 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-----------PHTQQVERVVGISFQPG 1233 (1344)
Q Consensus 1165 ~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~-----------~~~~h~~~I~sva~sp~ 1233 (1344)
+.+++.+|.+. |.++.|.+...-.|++|+.||.||+||+|....+...+. ....|.+.|.+++|..+
T Consensus 180 -~sH~LsGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 180 -FSHTLSGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred -ceeeeccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 99999999887 999976666666788999999999999996533333332 23358899999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCccceEEEec--CCCCeEEEEE---cCCCCEEEEEeCCCeEEEEe-CCCceEEEEecc
Q 000700 1234 LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAV---HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1307 (1344)
Q Consensus 1234 ~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~--h~~~Vtsla~---spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~ 1307 (1344)
+.++++.+.|..+++|+..++...+..+-. |.. -.++++ +-+...++---.++.+.+++ .+|..+..+..
T Consensus 258 --~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~- 333 (397)
T KOG4283|consen 258 --ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST- 333 (397)
T ss_pred --chhhhhccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec-
Confidence 999999999999999999987543333221 111 112222 22334444445568899999 78999999988
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1308 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1308 h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|- ..|.|.+|-|+=+.+.+|..|+.|..|.
T Consensus 334 h~-------k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 334 HL-------KRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred cc-------ceeeEEeecCchhhhhccccCCcccccc
Confidence 64 7899999999999999999999998883
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=187.06 Aligned_cols=292 Identities=12% Similarity=0.171 Sum_probs=202.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-ECCCeEEEE
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIW 1105 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~IrIW 1105 (1344)
.|+..|++++|+.||++|++++.|+.|+||++++-+. -+.++.. -+.+--+.+.| .+|..-+++. -...++++|
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~F--apDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVF--APDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEE--CCCcceEEEEEccCCEEEEE
Confidence 3678899999999999999999999999999875321 1111111 11235688899 6676655544 455679999
Q ss_pred eccCCC-CceeEE-eeee---cccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeE
Q 000700 1106 KDYDQK-DKQKLV-TAFS---SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA 1180 (1344)
Q Consensus 1106 dl~~~~-~~~~lv-s~~~---~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vts 1180 (1344)
.+...+ |..... ..+. .-..|.-.+..++ ....+.+|++++.|..|.+||++ ++ .+..+...... ..
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG----iA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~--n~ 232 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG----IAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSS--NY 232 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEe----ecCCceEEEEecCCCcEEEEecC-Cc-eeeeecccccc--cc
Confidence 874421 211110 0111 1122333333322 22356678888999999999999 66 78888765544 22
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC-----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTP-----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~-----~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~ 1255 (1344)
.+..+|+|+++++++-.-.|++|.+--. +...+.+ .++||.+.|..++|+++ ...+++.|.||+++|||+.-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~saV~~~aFsn~--S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQSAVLAAAFSNS--STRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccchhheeeeeeCCC--cceeEEEecCCcEEEeeccc
Confidence 3367999999999999999999987422 2233334 56799999999999999 99999999999999999863
Q ss_pred Cc------cceEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEE
Q 000700 1256 HK------DAYLTID----AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTF 1324 (1344)
Q Consensus 1256 ~~------~~v~tl~----~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slaf 1324 (1344)
.. ..+++.. ...+.-..+..+|.|..||.... ..+++|. -+|+...+++. -|.+.|++++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~-------~h~~~Is~is~ 381 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELED-------IHSTTISSISY 381 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHH-------hhcCceeeEEe
Confidence 21 2222221 12334458999999999988653 5799998 45666555544 23489999999
Q ss_pred ecCCCEEEEEECCCeEEEc
Q 000700 1325 HPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1325 spdg~~Lasgs~Dg~I~IW 1343 (1344)
+++|+++|++| |..+++.
T Consensus 382 ~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred cCCCcEEeeec-ceeeeee
Confidence 99999999997 6677664
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=187.63 Aligned_cols=249 Identities=17% Similarity=0.210 Sum_probs=190.2
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec--CCCeEEEEECCCe
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--QSGYLYASGEVSS 1154 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~--~~~~Llagg~Dg~ 1154 (1344)
..|.++.. .-.|..|+|++.|++|+|+....+.. ..+. .++.||.++|.. ++|-. .|+.|++++.||.
T Consensus 12 D~IHda~l--DyygkrlATcsSD~tVkIf~v~~n~~-s~ll---~~L~Gh~GPVwq----v~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 12 DMIHDAQL--DYYGKRLATCSSDGTVKIFEVRNNGQ-SKLL---AELTGHSGPVWK----VAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhHhhh--hhhcceeeeecCCccEEEEEEcCCCC-ceee---eEecCCCCCeeE----EeecccccCcEeeEeecCce
Confidence 56666665 45799999999999999999977433 2333 468999999998 88865 5788888899999
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEec
Q 000700 1155 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQP 1232 (1344)
Q Consensus 1155 I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~-dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp 1232 (1344)
|.||.-..+. ........|..+ |+++++-+. -|-.|++++.||.|.+.+.+... .....+....|.-.|++++|.|
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~S-VNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSAS-VNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred EEEEecCCCchhhhhhhhhhccc-ceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecC
Confidence 9999987765 123445566665 999954332 25678999999999999998762 2222234457889999999998
Q ss_pred CC-CC-----------CEEEEEECCCcEEEEECCCCc-cceEEEecCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEe
Q 000700 1233 GL-DP-----------AKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHA----PIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1233 ~~-~g-----------~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h~~~Vtsla~spdg----~~LasgS~Dg~I~Iwd 1295 (1344)
.. .| +.|++|+.|..|+||+..++. ..-.++.+|.+.|+.++|.|.- ..||++|.||+|.||.
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 61 11 569999999999999998753 3345689999999999999964 3899999999999998
Q ss_pred CCCc--eE-EEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1296 LEGE--QL-GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1296 ~~g~--~l-~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+.+ .- .++. ++ -...++.+.|+..|..|+.++.|+.|.+|.
T Consensus 240 ~~~e~e~wk~tll--~~-----f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 240 KDEEYEPWKKTLL--EE-----FPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ecCccCccccccc--cc-----CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 5422 11 1111 11 236899999999999999999999999994
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=190.60 Aligned_cols=224 Identities=19% Similarity=0.270 Sum_probs=184.1
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC-----------CCceeEEeeeecccCCCCCccccceE
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-----------KDKQKLVTAFSSIQGHKPGVRCSNVV 1136 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-----------~~~~~lvs~~~~l~~h~~~V~s~~~~ 1136 (1344)
.+..|. +.+.+.+| ++||.+++||+.|-.|+|.|++.- .+......-++++-+|...|++
T Consensus 107 ylt~HK---~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~---- 177 (430)
T KOG0640|consen 107 YLTSHK---SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVND---- 177 (430)
T ss_pred EEeecc---cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccc----
Confidence 456677 78999999 899999999999999999998620 1111111224778899999999
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1215 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~-~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~ 1215 (1344)
+.|+|....|++|+.|++|++||..+.. ..+.++.- ...+|.++ .++|.|.++++|.....+++||+.+-+..+...
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsi-SfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSI-SFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeE-eecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999999999999998765 33333221 12359999 778999999999999999999999988555444
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe-cCC-CCeEEEEEcCCCCEEEEEeCCCeEEE
Q 000700 1216 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHR-GSLSALAVHRHAPIIASGSAKQLIKV 1293 (1344)
Q Consensus 1216 ~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~h~-~~Vtsla~spdg~~LasgS~Dg~I~I 1293 (1344)
...+|.+.|+++.+++. |++.++|+.||.|++||--.+ .++.++. .|. ..|.+..|..+++++.+.+.|..+++
T Consensus 256 -Pd~qht~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 256 -PDDQHTGAITQVRYSST--GSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred -cccccccceeEEEecCC--ccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 66789999999999999 999999999999999998877 6777775 454 47999999999999999999999999
Q ss_pred Ee-CCCceEEEEec
Q 000700 1294 FS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1294 wd-~~g~~l~~l~~ 1306 (1344)
|. -+|+.+....+
T Consensus 332 WEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 332 WEISTGRMLKEYTG 345 (430)
T ss_pred eeecCCceEEEEec
Confidence 99 46888887766
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=186.62 Aligned_cols=244 Identities=18% Similarity=0.264 Sum_probs=187.3
Q ss_pred CCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC
Q 000700 1072 HDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1151 (1344)
Q Consensus 1072 h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~ 1151 (1344)
..++...|+++.| ++.++.|++++.||.+++|+.....-. ..-.|..++.+ ++|. +...+++|+-
T Consensus 9 ~npP~d~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~--------~~~~~~~plL~----c~F~-d~~~~~~G~~ 73 (323)
T KOG1036|consen 9 ENPPEDGISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLK--------LKFKHGAPLLD----CAFA-DESTIVTGGL 73 (323)
T ss_pred CCCChhceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhh--------hheecCCceee----eecc-CCceEEEecc
Confidence 3345589999999 577888888999999999999763221 12346677776 6776 4789999999
Q ss_pred CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000700 1152 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1152 Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~s 1231 (1344)
||.|+.+|+.++. ...+..|.. +|.||. .....+.+++|+.|++|++||.|... .+-.+ .....|.++...
T Consensus 74 dg~vr~~Dln~~~--~~~igth~~-~i~ci~-~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~----d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN--EDQIGTHDE-GIRCIE-YSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF----DQGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCc--ceeeccCCC-ceEEEE-eeccCCeEEEcccCccEEEEeccccc-ccccc----ccCceEEEEecc
Confidence 9999999999987 445555555 499994 45677789999999999999999744 33322 123578888775
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCccceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----ceEEEEe
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIR 1305 (1344)
Q Consensus 1232 p~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-----~~l~~l~ 1305 (1344)
++.|++|+.|..|.+||+|+...+.+... .-+-.++|++.-|++.-++++|-||.|.+=.++. .....++
T Consensus 145 ----g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 145 ----GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred ----CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 77999999999999999998855542222 2345789999999999999999999998765432 4556677
Q ss_pred ccCCcccc--ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1306 YHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1306 ~~h~~f~~--~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
. |..-.. .-..+|++++|||-...||||+.||.|.+||
T Consensus 221 C-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 221 C-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred e-eecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 7 653322 1234899999999999999999999999997
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=201.36 Aligned_cols=240 Identities=17% Similarity=0.221 Sum_probs=197.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
.+.|.+++-+|+|.+|+.|+..|.+++|.+.+|+.+..+..|. ..|+++.| +.||.+++|||.||.|.+|.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---cceeEEEE--eCCCcEEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999999999999999 99999999 789999999999999999998431
Q ss_pred --CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1111 --KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1111 --~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
......+.+++.+.+|.-+|+++ .+.+.+.+.++++++.|.++++||+..+. .+.++... ..+.++ ..+|.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl--~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp--~si~av-~lDpae 229 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDL--QIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFP--SSIKAV-ALDPAE 229 (476)
T ss_pred cccccCCCccceeeeccCcceeEEE--EecCCCccceEEEecCCceEEEEEeccce-eeEEEecC--CcceeE-EEcccc
Confidence 11111333456788999999882 23444456799999999999999999998 88777664 348999 778899
Q ss_pred CEEEEEECCCeEEEEECCCCC------------eeeEeecCCCCCCC--CeEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPD------------MLVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1254 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~------------~~v~~~~~~~~h~~--~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr 1254 (1344)
..+.+|+.+|.|.+.++.... .....++.+.||.+ .|+|++++-+ |..|++|+.||.|+|||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D--gtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD--GTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC--ccEEEeeCCCCCEEEEecc
Confidence 999999999999998876432 01122334557777 9999999999 9999999999999999999
Q ss_pred CCccceEEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1255 NHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
.. ++++++....++|+.+.+.|-.+-...
T Consensus 308 S~-Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SK-QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hH-HHHHHHhhhccccceeEeeccccceec
Confidence 87 888888877889999999776554433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=199.78 Aligned_cols=261 Identities=16% Similarity=0.251 Sum_probs=199.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEe------------eCCCCCCCCeEEEEEEeeCCCCEEEEEECC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSF------------DNHDFPDKGISKLCLVNELDVSLLLVASCN 1099 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~------------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1099 (1344)
..|.++.|++.|..|++.+.....+|+|-+..+.+... ++|. ..+++-+|.+ .+.+.++|++.|
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi---a~lt~g~whP-~~k~~FlT~s~D 290 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI---AELTCGCWHP-DNKEEFLTCSYD 290 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce---eeeecccccc-CcccceEEecCC
Confidence 67999999999999988888999999998744443332 4566 7899999943 456789999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeec-CCCC-C
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIP-SSSD-C 1176 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~-~~v~~i~-~~~~-~ 1176 (1344)
|++|||++...+...+.+.. +...+..-.+. +++|++++..|++|+.||.|.+||..... .....++ .|.. .
T Consensus 291 gtlRiWdv~~~k~q~qVik~-k~~~g~Rv~~t----sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKT-KPAGGKRVPVT----SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred CcEEEEecCCchhheeEEee-ccCCCcccCce----eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 99999999875544444311 11222222333 48999999999999999999999975433 1222222 3433 2
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------CCcEEE
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------AGDIQF 1250 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~------DG~I~I 1250 (1344)
.|+|| .|+.+|++|++-+.|+++++||+|..+..+..+..+ .....-+.++|+|+ .++|++|+. .|.+.+
T Consensus 366 ~Itsi-~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd--~kli~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 366 DITSI-SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPD--DKLILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred ceeEE-EeccccchhhhccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCC--ceEEEecccccCCCCCceEEE
Confidence 59999 788999999999999999999999887666655443 22345678999999 999999864 578999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-----CCCceEEEEec
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-----LEGEQLGTIRY 1306 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-----~~g~~l~~l~~ 1306 (1344)
||..+. ..+..+......|..+.|||.-+.|.+|+.||.++||- ..|..+...+.
T Consensus 442 ~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~ 501 (641)
T KOG0772|consen 442 FDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKP 501 (641)
T ss_pred Eeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccccccchhheeecC
Confidence 999988 78888888888999999999999999999999999874 34555555554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-17 Score=187.75 Aligned_cols=263 Identities=14% Similarity=0.154 Sum_probs=190.5
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE-EEEECCCeEEEEeccCCCCceeEEeeee
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L-~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1121 (1344)
+..+++++.|+.|++||..+++.+..+..+. .+.+++| ++++..+ ++++.++.|++||..+ ++. . .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~--~~dg~~l~~~~~~~~~v~~~d~~~--~~~--~---~ 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITL--SKDGKLLYVCASDSDTIQVIDLAT--GEV--I---G 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEE--CCCCCEEEEEECCCCeEEEEECCC--CcE--E---E
Confidence 3578899999999999999999988888655 4677888 7888876 5667889999999865 322 1 1
Q ss_pred cccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC-e
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-S 1199 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG-s 1199 (1344)
.+..+.. +.. ++|+++++.+++++ .++.|++||+++.. .+..+..+. .+.++ .+++++.+++++..++ .
T Consensus 68 ~~~~~~~-~~~----~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~~~--~~~~~-~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 68 TLPSGPD-PEL----FALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIPVGV--EPEGM-AVSPDGKIVVNTSETTNM 138 (300)
T ss_pred eccCCCC-ccE----EEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEeeCCC--CcceE-EECCCCCEEEEEecCCCe
Confidence 1222222 223 78999999887764 68999999999887 777766432 25677 6788999999988875 4
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE-EEECCCcEEEEECCCCccceEEEecCC-----C--CeE
Q 000700 1200 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV-SASQAGDIQFLDIRNHKDAYLTIDAHR-----G--SLS 1271 (1344)
Q Consensus 1200 VrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~La-sgs~DG~I~IWDlr~~~~~v~tl~~h~-----~--~Vt 1271 (1344)
+.+||.++.+ ....... ...+..++|+|+ ++.++ ++..+|.|++||++++ +.+..+..+. . ...
T Consensus 139 ~~~~d~~~~~-~~~~~~~----~~~~~~~~~s~d--g~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 139 AHFIDTKTYE-IVDNVLV----DQRPRFAEFTAD--GKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred EEEEeCCCCe-EEEEEEc----CCCccEEEECCC--CCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCcc
Confidence 6778988766 3322211 134577999999 88775 4456999999999987 5666554321 1 235
Q ss_pred EEEEcCCCCEEEE-EeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE-CCCeEEEcC
Q 000700 1272 ALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS-ADACVSIHS 1344 (1344)
Q Consensus 1272 sla~spdg~~Las-gS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs-~Dg~I~IWd 1344 (1344)
.++|+|+++++++ .+.++.|.+||.. ++.+..+. +. ..+.+++|+|+|.+|++++ .+|.|.|||
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eC-------CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 6889999997544 4556789999965 44444332 22 4688999999999998864 589999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=212.57 Aligned_cols=248 Identities=15% Similarity=0.255 Sum_probs=202.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------C-----------cEEEEeeCCCCCCCCeEEEEEEeeCC
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------D-----------TLLNSFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t-------g-----------~~l~~~~~h~~~~~~ItsL~f~ns~d 1089 (1344)
..|.+.|+|+.|+|||++||+|++|+.|.||+... | +.+..+.+|. ..|.+++| +|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~---~DV~Dv~W--sp~ 140 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD---SDVLDVNW--SPD 140 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC---Cccceecc--CCC
Confidence 34678999999999999999999999999998872 1 3567788999 99999999 789
Q ss_pred CCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee
Q 000700 1090 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP 1169 (1344)
Q Consensus 1090 ~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~ 1169 (1344)
+.+|++++.|++|.||+..+. +.+ +.+.+|..-|.+ +.|.|-|.++++-++|++|+||+..+-. +.+.
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF----~~~---~vl~~H~s~VKG----vs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~ 208 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTF----ELL---KVLRGHQSLVKG----VSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKS 208 (942)
T ss_pred ccEEEEecccceEEEEccccc----eee---eeeecccccccc----eEECCccCeeeeecCCceEEEEEcccce-eeEe
Confidence 999999999999999998662 222 568999999999 9999999999999999999999988766 6777
Q ss_pred ecCCCC-----CCeeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CC--
Q 000700 1170 IPSSSD-----CSISALTASQVHGGQLAAGFV----DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LD-- 1235 (1344)
Q Consensus 1170 i~~~~~-----~~VtsL~~~s~dg~~L~sGs~----DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~---~~-- 1235 (1344)
+..+.+ ..+..+ .|+|+|.+|++... -.++.|.+..+.+... .+-||.+++.++.|+|. ..
T Consensus 209 It~pf~~~~~~T~f~Rl-SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~----~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRL-SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK----DLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eccchhhCCCcceeeec-ccCCCcCeecchhhccCCcceeEEEecCCceeee----eeecCCCceEEEEeChHHhccccc
Confidence 765433 235667 68999999998643 2368888876655222 34588899999999986 01
Q ss_pred ------CC----EEEEEECCCcEEEEECCCCccceEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1236 ------PA----KIVSASQAGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1236 ------g~----~Lasgs~DG~I~IWDlr~~~~~v~tl-~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
.. .+|+|+.|++|.||..... .|+..+ +-....|..++|+|||..|.++|.||+|.++.++.
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCC-CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 11 6899999999999999776 454333 33467899999999999999999999999999763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=192.76 Aligned_cols=239 Identities=15% Similarity=0.290 Sum_probs=198.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
..|+++..+ +....++||+.|..+.++|... +. +. ..++||...|.. +.++++...+++++.|..|+
T Consensus 220 pgi~ald~~--~s~~~ilTGG~d~~av~~d~~s--~q--~l---~~~~Gh~kki~~----v~~~~~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 220 PGITALDII--PSSSKILTGGEDKTAVLFDKPS--NQ--IL---ATLKGHTKKITS----VKFHKDLDTVITASADEIIR 286 (506)
T ss_pred CCeeEEeec--CCCCcceecCCCCceEEEecch--hh--hh---hhccCcceEEEE----EEeccchhheeecCCcceEE
Confidence 357777763 4478999999999999999854 22 22 458999999888 89999999999999999999
Q ss_pred EEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000700 1157 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1236 (1344)
Q Consensus 1157 VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g 1236 (1344)
||...... .......|.. +|+.+ ..++.|.+|++++.||+..+.|++++....... .+...-.+++.+|||+ |
T Consensus 287 vws~~~~s-~~~~~~~h~~-~V~~l-s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--~~~s~v~~ts~~fHpD--g 359 (506)
T KOG0289|consen 287 VWSVPLSS-EPTSSRPHEE-PVTGL-SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--DETSDVEYTSAAFHPD--G 359 (506)
T ss_pred eecccccc-Cccccccccc-cceee-eeccCCcEEEEecCCceEEEEEccCCcEEEEEe--eccccceeEEeeEcCC--c
Confidence 99998877 6666666655 49999 678899999999999999999999998554432 2123356999999999 9
Q ss_pred CEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCcccccc
Q 000700 1237 AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1237 ~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~ 1315 (1344)
.+|.+|+.||.|+|||+... ..+..|.+|.++|..++|+.+|-+||+++.|+.|++||+. -+...++.. . .
T Consensus 360 Lifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l-~------~ 431 (506)
T KOG0289|consen 360 LIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL-D------E 431 (506)
T ss_pred eEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec-c------c
Confidence 99999999999999999998 6899999999999999999999999999999999999965 344445543 2 2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
...|.++.|.+.|.+|+.++.|=.|+++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEE
Confidence 2479999999999999999888777665
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=195.07 Aligned_cols=290 Identities=18% Similarity=0.262 Sum_probs=213.9
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEECCC----CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEE
Q 000700 1030 FEKGTKTALLQPFSP--IVVAADENERIKIWNYEE----DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~--~Latgs~dg~I~VWd~~t----g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1103 (1344)
+..+|++++|||..+ ++|+|+..|.|-+||+.+ ...+..+..|. .+|++|.|.+ .+...+++.|.||+|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs---~~Vs~l~F~P-~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS---GPVSGLKFSP-ANTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC---ccccceEecC-CChhheeeeccCceee
Confidence 357899999999876 888999999999999942 24456677777 8999999953 4677899999999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
.-|++. ...+.+ -.+........ .++++.+.+.++.++.-|...+||.++.......+..|.. .|++|++
T Consensus 261 ~~D~~~--~i~e~v---~s~~~d~~~fs----~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~ 330 (498)
T KOG4328|consen 261 LQDFEG--NISEEV---LSLDTDNIWFS----SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVAL 330 (498)
T ss_pred eeeecc--hhhHHH---hhcCccceeee----eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeec
Confidence 999966 222222 11111112222 3788888899999988889999999987723556666766 4999977
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeE-eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECC---CCccc
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVC-STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDA 1259 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~-~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr---~~~~~ 1259 (1344)
.+....+|++++.|++++|||+|.-..... .+ ....|...|.++.|+|. +..|+|.+.|..|+|||.. ....+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l-st~~HrrsV~sAyFSPs--~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFL-STLPHRRSVNSAYFSPS--GGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcce-ecccccceeeeeEEcCC--CCceEeeccCCceEEeecccccccCCc
Confidence 777788999999999999999995432111 12 22368899999999999 4449999999999999984 22256
Q ss_pred eEEEecCCC------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCce-EEEEeccCCccccccCCCeEE-EEEecCCCEE
Q 000700 1260 YLTIDAHRG------SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNC-LTFHPYQVLL 1331 (1344)
Q Consensus 1260 v~tl~~h~~------~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~-l~~l~~~h~~f~~~~~~~V~s-lafspdg~~L 1331 (1344)
..++. |.. ......|+|+..++++|-.-..|-|+|-++++ +..+.. . ....|.+ ..|||.+..+
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P------~~~tI~~vn~~HP~~~~~ 479 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-P------ESSTIPSVNEFHPMRDTL 479 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-c------cccccccceeecccccce
Confidence 66665 322 23456899999999999999999999976655 555433 1 1234555 4899999855
Q ss_pred EEEE-CCCeEEEcC
Q 000700 1332 AAGS-ADACVSIHS 1344 (1344)
Q Consensus 1332 asgs-~Dg~I~IWd 1344 (1344)
++|+ ..|.|.||.
T Consensus 480 ~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 480 AAGGNSSGKIYVFT 493 (498)
T ss_pred eccCCccceEEEEe
Confidence 5554 478999883
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=200.20 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=214.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCE-EEEEECCCeEEEEeccCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL-LLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~-L~tgs~DG~IrIWdl~~~ 1110 (1344)
.+|+++.=+|--+.+|+|..+|+|.|+|++.++.+.+|+... ++|+++.| ..||.. +++|+..|.+.+||++..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCC
Confidence 789999999999999999999999999999999999999876 79999999 667764 556667799999999652
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECC-----------------------------
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE----------------------------- 1161 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~----------------------------- 1161 (1344)
+... .....|.+.+.. ..|.+....+++++.|+.+++|-.+
T Consensus 278 --kl~~----v~~nah~~sv~~----~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g 347 (910)
T KOG1539|consen 278 --KLIN----VTRNAHYGSVTG----ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG 347 (910)
T ss_pred --eeee----eeeccccCCccc----ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc
Confidence 1111 112345444444 3344444444444444444444222
Q ss_pred ------------------CCc---------------------------eee-----------------------------
Q 000700 1162 ------------------KEQ---------------------------QMV----------------------------- 1167 (1344)
Q Consensus 1162 ------------------~~~---------------------------~~v----------------------------- 1167 (1344)
.+. +.+
T Consensus 348 ~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 348 HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 100 000
Q ss_pred ---------eeecCC----CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1168 ---------NPIPSS----SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1168 ---------~~i~~~----~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
..+... .+..++++ +.+..|++.+.|+..|.|-+|++.++- ....+.....|.+.|++++..-.
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av-~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~~~~ah~~~V~gla~D~~- 504 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAV-CVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFGDSPAHKGEVTGLAVDGT- 504 (910)
T ss_pred eccCcccccEEecCccccccCcceEEE-EEeccCceEEEeccCCeEEEEEcccCe-eecccccCccccCceeEEEecCC-
Confidence 000000 11235666 567789999999999999999999886 44444333478899999999877
Q ss_pred CCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCcccc
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMA 1313 (1344)
Q Consensus 1235 ~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~ 1313 (1344)
++.+++++.+|.+++||..+. ..+..++ -...++++..|....++|.+..|-.|.++| .+-+.+..+.+ |.
T Consensus 505 -n~~~vsa~~~Gilkfw~f~~k-~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~---- 576 (910)
T KOG1539|consen 505 -NRLLVSAGADGILKFWDFKKK-VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HG---- 576 (910)
T ss_pred -CceEEEccCcceEEEEecCCc-ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cc----
Confidence 899999999999999999987 6666666 355789999999999999999999999999 45667777887 66
Q ss_pred ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1314 QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1314 ~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.|++++|||||++|++++.|++|++||
T Consensus 577 ---nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 577 ---NRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred ---cceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 8999999999999999999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-20 Score=215.87 Aligned_cols=257 Identities=17% Similarity=0.356 Sum_probs=215.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeee
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1120 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1120 (1344)
|...+++.+...-.++|||.+ .+..|. ..+.++.. -..+..+++|+.|..+-+|.+.. ...+
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~------~~~~hs---aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~k----p~~i--- 63 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR------EFVAHS---AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGK----PNAI--- 63 (825)
T ss_pred Ccccccceeeeeeccccccch------hhhhhh---hhhceeee--eccceeeccCCCceeeccccccC----Cchh---
Confidence 445566666667778888865 344555 56666666 45778999999999999999844 2222
Q ss_pred ecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeE
Q 000700 1121 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1200 (1344)
Q Consensus 1121 ~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsV 1200 (1344)
..+.+|..+|.+ +.|+.....|++|..+|+|++||++..+ .++++.+|... +.++ .|+|-+.+++.|+.|+.+
T Consensus 64 ~S~~~hespIeS----l~f~~~E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~-~~sv-~f~P~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 64 TSLTGHESPIES----LTFDTSERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLN-ITSV-DFHPYGEFFASGSTDTDL 136 (825)
T ss_pred heeeccCCccee----eecCcchhhhcccccCCceeeeehhhhh-hhhhhhccccC-ccee-eeccceEEeccccccccc
Confidence 237899999999 8999999999999999999999999999 89999998876 8999 588999999999999999
Q ss_pred EEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC
Q 000700 1201 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1201 rIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
++||+|... +...+ .+|...|..+.|+|+ |+++++|+.|..++|||...+ +...+|..|.+.+.++.|||..-
T Consensus 137 ~iwD~Rk~G-c~~~~---~s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 137 KIWDIRKKG-CSHTY---KSHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred eehhhhccC-ceeee---cCCcceeEEEeecCC--CceeeccCCcceeeeeccccc-ccccccccccccccccccCchhh
Confidence 999999665 45544 357788999999999 999999999999999999988 89999999999999999999999
Q ss_pred EEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000700 1281 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1281 ~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
++++||.|++|++||++ -+.+...+. . ...|.+.+|+|+++.+++|..+
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~-~-------~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKP-E-------TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCC-c-------cCCceeeeecCCceeeecCchh
Confidence 99999999999999976 555555544 2 3789999999999999888654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=203.36 Aligned_cols=247 Identities=16% Similarity=0.241 Sum_probs=208.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC-CCCEEEEEECCCeEEEEeccCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
.++.+++.+|+|++||+|+.-|+++||++.+-+.+..+..|. ..|.++.|.+.. ...+|++++.|..|+|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 579999999999999999999999999999999999999999 999999996422 347899999999999999854
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeecCC----CCCCeeEEEEE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIPSS----SDCSISALTAS 1184 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~--~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~----~~~~VtsL~~~ 1184 (1344)
+..++ +++.+|...|++ +.|-..| ..++++|.|+.|.+=-.++.. -...+..| ....++.| ..
T Consensus 536 --ny~l~---qtld~HSssITs----vKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t~t~~ktTlYDm-~V 604 (1080)
T KOG1408|consen 536 --NYDLV---QTLDGHSSSITS----VKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHTQTLSKTTLYDM-AV 604 (1080)
T ss_pred --ccchh---hhhcccccceeE----EEEeecCCceEEEeccCchhhheehhcccc-CceeccccccccccceEEEe-ee
Confidence 23333 678999999998 6666555 578888999877653333222 22223222 12237788 66
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
.+..+++++++.|..|+|||+.+++ .++.++...+|.+....+...|. |.++++.+.|.++.++|..++ +++.+..
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPS--giY~atScsdktl~~~Df~sg-EcvA~m~ 680 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPS--GIYLATSCSDKTLCFVDFVSG-ECVAQMT 680 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCC--ccEEEEeecCCceEEEEeccc-hhhhhhc
Confidence 7888999999999999999999998 78888888889899999999999 999999999999999999998 8999999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1265 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1265 ~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
+|...|+.+.|.+|.+.|++.+.||.|.||.+.
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999964
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=178.65 Aligned_cols=275 Identities=12% Similarity=0.238 Sum_probs=200.9
Q ss_pred cccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC
Q 000700 1024 ACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1099 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1099 (1344)
..++..|.+-|.++.|.+.|+.+|+++.|++|+|||.++. .+...++.|. +.|..+.|....-|+.+++++.|
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~---~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD---GSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC---CcEEEEEecCccccceEEEEecC
Confidence 4466677788999999999999999999999999996533 5667789999 99999999877789999999999
Q ss_pred CeEEEEeccCCCCce--eEEeeeecccCCCCCccccceEEEEecC--CCeEEEEECCCeEEEEECCCCc-----eeeeee
Q 000700 1100 GNIRIWKDYDQKDKQ--KLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSSIMLWDLEKEQ-----QMVNPI 1170 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~--~lvs~~~~l~~h~~~V~s~~~~v~ws~~--~~~Llagg~Dg~I~VWDl~~~~-----~~v~~i 1170 (1344)
++++||.-.....+. ..-....++.+....|.+ +.|.|. |-.+++++.||.+|||+.-... +....+
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D----V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD----VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeE----EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 999999863211111 011111345666677777 777664 5567778999999999865432 022222
Q ss_pred c------CCCCCCeeEEEEEcC--CCCEEEEEECC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC--C
Q 000700 1171 P------SSSDCSISALTASQV--HGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL--D 1235 (1344)
Q Consensus 1171 ~------~~~~~~VtsL~~~s~--dg~~L~sGs~D-----GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~--~ 1235 (1344)
. +.......|+.+.+. ...+|+.|+.+ +.++||..............+.+|+.+|+.++|.|.. .
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 2 222333567744421 24578888876 5789998765543334444566899999999999982 2
Q ss_pred CCEEEEEECCCcEEEEECCCCc-------------------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHK-------------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1236 g~~Lasgs~DG~I~IWDlr~~~-------------------~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
...|++++.|| |+||.++... +.+..+..|++.|+.+.|+-.|.+|++.+.||.|++|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 35789999999 9999988311 345567789999999999999999999999999999983
Q ss_pred C----CceEEEEec
Q 000700 1297 E----GEQLGTIRY 1306 (1344)
Q Consensus 1297 ~----g~~l~~l~~ 1306 (1344)
+ -++...++.
T Consensus 318 ny~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 318 NYNNLWKCTSVLKA 331 (361)
T ss_pred hhhhhheeeeEEec
Confidence 2 345555554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=192.84 Aligned_cols=267 Identities=18% Similarity=0.271 Sum_probs=199.7
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CCeEEEEeccCCCCceeEEeeeecccCCCCC
Q 000700 1051 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129 (1344)
Q Consensus 1051 ~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1129 (1344)
+..++.+||+.+|....++++... ..-.++..+ ++.+++++.. ...|.+|.+....... ...-..+.
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~--a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~-------q~~v~Pg~ 83 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYL--AQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVV-------QYIVLPGP 83 (476)
T ss_pred CCcceeEEecCCCceeEEecCccc--ccchhhhhh---chhheeeecccCccccccccCchhhhh-------hhcccccc
Confidence 345699999999999999987731 122222222 3466766653 4578999985411111 01112234
Q ss_pred ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCC-
Q 000700 1130 VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP- 1208 (1344)
Q Consensus 1130 V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~- 1208 (1344)
+.+ +.-++.|.++++|+..|.|++|.+.++. .+..+..|... |+++ .++.||.+|++|+.||.|.+|++-.-
T Consensus 84 v~a----l~s~n~G~~l~ag~i~g~lYlWelssG~-LL~v~~aHYQ~-ITcL-~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 84 VHA----LASSNLGYFLLAGTISGNLYLWELSSGI-LLNVLSAHYQS-ITCL-KFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred eee----eecCCCceEEEeecccCcEEEEEecccc-HHHHHHhhccc-eeEE-EEeCCCcEEEecCCCccEEEEEEEeec
Confidence 444 6666777777777799999999999999 99999888887 9999 67889999999999999999987421
Q ss_pred ----CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1209 ----DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1209 ----~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
......+..+.+|.-.|+.+...+++....++|+|.|.++++||+..+ ..+.++. ....+.+++++|-+..+.+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~-fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT-FPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe-cCCcceeEEEcccccEEEe
Confidence 112223334567889999999987744578999999999999999998 7777765 4668999999999999999
Q ss_pred EeCCCeEEEEeCC---C--------------ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1285 GSAKQLIKVFSLE---G--------------EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1285 gS~Dg~I~Iwd~~---g--------------~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+.+|.|.+.++. | ..+..+.+ |. ....|+|++.+-||.+|++|+.||.|.|||
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~-----~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HE-----NESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeecc-cc-----CCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 9999999988842 2 12223333 32 124999999999999999999999999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=200.92 Aligned_cols=242 Identities=17% Similarity=0.275 Sum_probs=197.2
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEe-cC
Q 000700 1064 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQ 1142 (1344)
Q Consensus 1064 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws-~~ 1142 (1344)
+..+.+.+|. ..|..+++ .++..++++|.||++++|+-.. +...- ...+.+|.+.+... ++|- .+
T Consensus 5 ~ls~~l~gH~---~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~--~~~l~---~~~~~~~~g~i~~~---i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEGHK---SDVRAVAV---TDGVCIISGSRDGTVKVWAKKG--KQYLE---THAFEGPKGFIANS---ICYAESD 70 (745)
T ss_pred eeEEEeccCc---cchheeEe---cCCeEEeecCCCCceeeeeccC--ccccc---ceecccCcceeecc---ceecccc
Confidence 4556788898 78888887 3667899999999999999744 11111 12355666655542 3443 46
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
++.+++|+.|+.|.+|...+.. +...+++|... |.+++.. .++. +++|+.|.++++|-...-. . ...+|.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~-P~~~LkgH~sn-VC~ls~~-~~~~-~iSgSWD~TakvW~~~~l~---~---~l~gH~ 140 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAE-PLYTLKGHKSN-VCSLSIG-EDGT-LISGSWDSTAKVWRIGELV---Y---SLQGHT 140 (745)
T ss_pred CcceEeecccceEEEEecCCCC-chhhhhccccc-eeeeecC-CcCc-eEecccccceEEecchhhh---c---ccCCcc
Confidence 6789999999999999999999 99999999887 9999433 3444 9999999999999765332 2 255888
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1302 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~ 1302 (1344)
..|..+..-|. + .++|||.|.+|++|.-. +.++++.+|...|+++++-+++ .|++++.||.|+.|+++|+.+.
T Consensus 141 asVWAv~~l~e--~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 141 ASVWAVASLPE--N-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred hheeeeeecCC--C-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceee
Confidence 99999999887 4 99999999999999763 7899999999999999999765 5678889999999999999999
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
...+ |+ +.|.+++...++..++++|+|++++||+
T Consensus 214 ~~~g-ht-------n~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 214 EMHG-HT-------NFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred eeec-cc-------eEEEEEEecCCCCeEEEecCCceEEEee
Confidence 9988 77 6799999777888999999999999996
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=205.35 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=174.2
Q ss_pred EEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCC------ceeEE-eeeecccCCCCCccccceEE
Q 000700 1066 LNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD------KQKLV-TAFSSIQGHKPGVRCSNVVV 1137 (1344)
Q Consensus 1066 l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~------~~~lv-s~~~~l~~h~~~V~s~~~~v 1137 (1344)
.+.+. .|. +.|+++.| ++||.|||+||.||.|+||.+...+. ....+ ........+ .++.. .
T Consensus 259 ~Qe~~~ah~---gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~-~p~~s----~ 328 (712)
T KOG0283|consen 259 VQEISNAHK---GAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQI-EPSTS----S 328 (712)
T ss_pred eeccccccC---CcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhcccc-Ccccc----c
Confidence 34455 777 89999999 89999999999999999999865111 00000 000000000 00000 0
Q ss_pred EEecCCCeEE--EEECCCeEEEEECC----CCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCee
Q 000700 1138 DWQQQSGYLY--ASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML 1211 (1344)
Q Consensus 1138 ~ws~~~~~Ll--agg~Dg~I~VWDl~----~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~ 1211 (1344)
.=...+.... .+.....+. .+.. .++ ++..+.+|... |..+ .|+ .+++|++++.|.+||+|++...+ +
T Consensus 329 ~~~~~~~~s~~~~~~~s~~~~-~p~~~f~f~ek-P~~ef~GHt~D-ILDl-SWS-Kn~fLLSSSMDKTVRLWh~~~~~-C 402 (712)
T KOG0283|consen 329 EEKISSRTSSSRKGSQSPCVL-LPLKAFVFSEK-PFCEFKGHTAD-ILDL-SWS-KNNFLLSSSMDKTVRLWHPGRKE-C 402 (712)
T ss_pred cccccccccccccccCCcccc-CCCcccccccc-chhhhhccchh-heec-ccc-cCCeeEeccccccEEeecCCCcc-e
Confidence 0000000000 111111111 1111 234 78888999887 9999 554 56799999999999999999777 6
Q ss_pred eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000700 1212 VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLI 1291 (1344)
Q Consensus 1212 v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I 1291 (1344)
.+.+ .|...|+||+|+|. +.++|++|+-||.|+||++... .+..+..-..-|+++++.|+|+..+.|+.+|.+
T Consensus 403 L~~F----~HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 403 LKVF----SHNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC 475 (712)
T ss_pred eeEE----ecCCeeEEEEeccc-CCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence 6666 57799999999998 8999999999999999999965 444444445789999999999999999999999
Q ss_pred EEEeCCCceEEE---EeccCCccccccCCCeEEEEEecCCC-EEEEEECCCeEEEcC
Q 000700 1292 KVFSLEGEQLGT---IRYHHPSFMAQKIGSVNCLTFHPYQV-LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1292 ~Iwd~~g~~l~~---l~~~h~~f~~~~~~~V~slafspdg~-~Lasgs~Dg~I~IWd 1344 (1344)
++|++.+..+.. +.. |.+-...+ ..|+++.|.|... .+++.+.|..|+|||
T Consensus 476 ~fY~t~~lk~~~~~~I~~-~~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 476 RFYDTEGLKLVSDFHIRL-HNKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred EEEEccCCeEEEeeeEee-ccCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 999988765543 222 32222223 3899999998663 355566899999997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=194.29 Aligned_cols=299 Identities=15% Similarity=0.228 Sum_probs=221.0
Q ss_pred CCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCCc---------------------EEEE----------eeCCCC
Q 000700 1029 RFEKGTKTALLQPFSP---IVVAADENERIKIWNYEEDT---------------------LLNS----------FDNHDF 1074 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~---~Latgs~dg~I~VWd~~tg~---------------------~l~~----------~~~h~~ 1074 (1344)
.|.+.|.+++|...+. +||+++.|..|+||.+.-+. .... +.+|.
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe- 267 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE- 267 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-
Confidence 3567899999977554 88999999999999764221 1111 23788
Q ss_pred CCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCe
Q 000700 1075 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSS 1154 (1344)
Q Consensus 1075 ~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~ 1154 (1344)
..|.++.| ++.+..|++++.|.++.+|...+..|.....-......+....-.+ ..|++++..+++-|..|.
T Consensus 268 --DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g----~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 268 --DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG----GLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred --cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceee----EEEcCCCCEEEEecccCc
Confidence 89999999 7888899999999999999987755544444333333333344444 789999999999999999
Q ss_pred EEEEECCCCc--eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-----------------------
Q 000700 1155 IMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----------------------- 1209 (1344)
Q Consensus 1155 I~VWDl~~~~--~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~----------------------- 1209 (1344)
.++|-..... .....+.+|.+. |+++ .++|.|.++++.+.|.+-|+|-.-..+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~-V~dv-~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDG-VKDV-DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred EEEEeccCccceeecccccccccc-ceee-eecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 9999833221 123345677666 9999 677888888888888877776432000
Q ss_pred -----------eeeEee---------------------------------------------------------------
Q 000700 1210 -----------MLVCST--------------------------------------------------------------- 1215 (1344)
Q Consensus 1210 -----------~~v~~~--------------------------------------------------------------- 1215 (1344)
+..+.+
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 000000
Q ss_pred ---------------------cCCCCCCCCeEEEEEecCCCCCEEEEEECCC-----cEEEEECCCCccceEEEecCCCC
Q 000700 1216 ---------------------RPHTQQVERVVGISFQPGLDPAKIVSASQAG-----DIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1216 ---------------------~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG-----~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
+..-||...|.+++.+|+ ++++|+++... .|++|+..+. ..+..+.+|.-.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~--gnliASaCKS~~~ehAvI~lw~t~~W-~~~~~L~~HsLT 574 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT--GNLIASACKSSLKEHAVIRLWNTANW-LQVQELEGHSLT 574 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC--CCEEeehhhhCCccceEEEEEeccch-hhhheecccceE
Confidence 011257888999999999 99999998654 4999999988 677799999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+.++|+||+++|++.|.|+++.+|.........++. .+...|..-|++..|+|+++++||+|.|.+|+||.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999999953222222211 01223558899999999999999999999999994
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-19 Score=217.31 Aligned_cols=287 Identities=20% Similarity=0.288 Sum_probs=216.4
Q ss_pred CeEEEEEcCCCC-EEEEEE----------CCCcEEEEECC--CCc----EEEEeeCCCCCCCCeEEEEEEeeCCCC----
Q 000700 1033 GTKTALLQPFSP-IVVAAD----------ENERIKIWNYE--EDT----LLNSFDNHDFPDKGISKLCLVNELDVS---- 1091 (1344)
Q Consensus 1033 ~I~~l~fspdg~-~Latgs----------~dg~I~VWd~~--tg~----~l~~~~~h~~~~~~ItsL~f~ns~d~~---- 1091 (1344)
+.-.++|+|+++ ++++|. .+.++.||.+. +.+ .+..+... .+...++|. +.+.
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~----~rF~kL~W~--~~g~~~~G 81 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSS----NRFNKLAWG--SYGSHSHG 81 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccccc----ccceeeeec--ccCCCccc
Confidence 445678999987 566552 35666777543 222 23333322 478899994 4333
Q ss_pred EEEEEECCCeEEEEeccCC--CCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeee
Q 000700 1092 LLLVASCNGNIRIWKDYDQ--KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVN 1168 (1344)
Q Consensus 1092 ~L~tgs~DG~IrIWdl~~~--~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~ 1168 (1344)
+|+.|..||.|.+||.... .+...++ .....|.+.|.. ++|++..+ .|++|++||.|.|||+...+ .-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~g----LDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLG----LDFNPFQGNLLASGADDGEILIWDLNKPE-TPF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHH---hhhcccCCceee----eeccccCCceeeccCCCCcEEEeccCCcC-CCC
Confidence 5899999999999998652 2333333 456789999998 99999888 66666789999999998765 222
Q ss_pred eec-CCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC-
Q 000700 1169 PIP-SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG- 1246 (1344)
Q Consensus 1169 ~i~-~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG- 1246 (1344)
... ......|.+++|......+|++|+.+|.+.|||+|..+..+..- .+ +....+..++|||+ +...+++++.|.
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~-~~~~~~S~l~WhP~-~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DT-PGRMHCSVLAWHPD-HATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cC-CCccceeeeeeCCC-CceeeeeecCCCC
Confidence 221 11234599997766677889999999999999999887444332 22 22245889999999 777788887664
Q ss_pred --cEEEEECCCCccceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEE
Q 000700 1247 --DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCL 1322 (1344)
Q Consensus 1247 --~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg-~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~sl 1322 (1344)
.|.+||+|....+++++++|...|.++.|++.+ .++++++.|+.|.+|+ -+|+.+..+.. . .+.+..+
T Consensus 231 ~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-------~nW~fdv 302 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-------GNWCFDV 302 (1049)
T ss_pred CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-------Ccceeee
Confidence 499999998888999999999999999999976 7999999999999999 56788887765 3 3789999
Q ss_pred EEecCCC-EEEEEECCCeEEEcC
Q 000700 1323 TFHPYQV-LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1323 afspdg~-~Lasgs~Dg~I~IWd 1344 (1344)
.|+|... .+++++.||.|.||+
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eecCCCcchhhhheeccceeeee
Confidence 9999986 788888899999984
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=187.18 Aligned_cols=253 Identities=22% Similarity=0.341 Sum_probs=178.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC------CC---ceeEEeeeecccCCCCCccccceEEEEecC-CCeE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ------KD---KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYL 1146 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~------~~---~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~L 1146 (1344)
+.++.+.-.+-.+..+.++=+..|.|+||++... .+ .........++.+|...-.. ++|+|- .+.+
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~----LdWSp~~~g~L 227 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG----LDWSPIKTGRL 227 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee----eeccccccccc
Confidence 3444444422235556666688999999998431 00 00111122345667655444 999984 4568
Q ss_pred EEEECCCeEEEEECCCCceee--eeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1147 YASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1147 lagg~Dg~I~VWDl~~~~~~v--~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
++|...+.|++|...++.-.+ ..+.+|..+ |-.+.+.+.....|++|+.||+|+|||+|.+.+..... .+.|.+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S-VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS-VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--TKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccc-hhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--eeccCCc
Confidence 888788899999988876222 345566666 99996655667899999999999999999885333332 1577899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCC--ccceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCc--
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNH--KDAYLTIDAHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGE-- 1299 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~--~~~v~tl~~h~~~Vtsla~spdg-~~LasgS~Dg~I~Iwd~~g~-- 1299 (1344)
|+-|.|+.. ..+|++|+.||+++|||+|.. ++++.+++.|..+|+++.|||+. ..|++++.|..|.|||+.-+
T Consensus 305 VNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 999999998 669999999999999999964 37899999999999999999964 48888999999999995311
Q ss_pred ----------eEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCe
Q 000700 1300 ----------QLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADAC 1339 (1344)
Q Consensus 1300 ----------~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~ 1339 (1344)
.+..+.. .--|..+....|..+.||++- .+|++.+.||.
T Consensus 383 ~ee~~~~a~~~L~dlPp-QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPP-QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred hhhhccccccchhcCCc-eeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 0111111 111222234678899999987 67778778874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=177.25 Aligned_cols=279 Identities=15% Similarity=0.234 Sum_probs=206.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
..|+.|++.|.+||+|+.+|.|.|||+.+...-+.+.+|. .+|++++| +++|..|+|+|.|..|.+||+.. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~--gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLK--GS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEe--cCCCCEeeeecCCceeEEEeccC--CC
Confidence 7899999999999999999999999999998888899999 89999999 89999999999999999999976 33
Q ss_pred eeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCC---eeEEEEEcCCCC
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCS---ISALTASQVHGG 1189 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~---VtsL~~~s~dg~ 1189 (1344)
.... + ....+|+. +.|+|.....++++ .+..-.+-++.... ...++...+.. +-+-.++.+.|+
T Consensus 99 ~l~r-----i-rf~spv~~----~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 99 PLKR-----I-RFDSPVWG----AQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ceeE-----E-EccCccce----eeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCC
Confidence 2111 1 13456666 78888776666554 33333444444322 22222221111 111114788999
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc--------cceE
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------DAYL 1261 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~--------~~v~ 1261 (1344)
++++|...|.+.+||..+.+ ++..++... ...|..+.++.. |+.|+.-+.|..|+.|+++.-. ++..
T Consensus 167 yIitGtsKGkllv~~a~t~e-~vas~rits--~~~IK~I~~s~~--g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLE-CVASFRITS--VQAIKQIIVSRK--GRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEEecCcceEEEEecchhe-eeeeeeech--heeeeEEEEecc--CcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 99999999999999999887 554443221 267889999988 9999999999999999987321 1111
Q ss_pred EEe--cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000700 1262 TID--AHRGSLSALAVHRHAPIIASGSA-KQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1262 tl~--~h~~~Vtsla~spdg~~LasgS~-Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
.++ ..+..-.++.|+.+|.++++|+. ...++||. ..|..++.+.+ .. ......+.|||-...+++. ..
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG-~k------gE~l~DV~whp~rp~i~si-~s 313 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG-TK------GEELLDVNWHPVRPIIASI-AS 313 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC-Cc------hhheeecccccceeeeeec-cC
Confidence 111 01234567899999999988864 45799999 56888888876 33 3567889999999999988 67
Q ss_pred CeEEEcC
Q 000700 1338 ACVSIHS 1344 (1344)
Q Consensus 1338 g~I~IWd 1344 (1344)
|.|+||.
T Consensus 314 g~v~iw~ 320 (405)
T KOG1273|consen 314 GVVYIWA 320 (405)
T ss_pred CceEEEE
Confidence 8999994
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-14 Score=173.06 Aligned_cols=299 Identities=14% Similarity=0.169 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeE
Q 000700 1031 EKGTKTALLQPFS-PIVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1031 ~~~I~~l~fspdg-~~Latgs~dg~I~VWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1102 (1344)
...+..++.++.. .++++|+.||+|+|||...- +...++.. .++++.++..+ +.++.+++|+.||.|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~--~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMC--GNGDQFAVSTKDGSV 1122 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEec--cCCCeEEEEcCCCeE
Confidence 3556677776655 89999999999999997632 11222222 34688888884 689999999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCC-ccccceEEEEecCC--CeEEEEECCCeEEEEECCCCceeeeeec--CCCCCC
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPG-VRCSNVVVDWQQQS--GYLYASGEVSSIMLWDLEKEQQMVNPIP--SSSDCS 1177 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~-V~s~~~~v~ws~~~--~~Llagg~Dg~I~VWDl~~~~~~v~~i~--~~~~~~ 1177 (1344)
++.++.............+....+..+ +.+ ..+|.... ..++.+...+.|..||++... ....++ ..++.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~---m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~- 1197 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVS---MHAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGL- 1197 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEE---eecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccccc-
Confidence 999997633332333233333333322 222 12333222 256666788899999998766 444443 33444
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC-CCEEEEEE--CCCcEEEEECC
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD-PAKIVSAS--QAGDIQFLDIR 1254 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~-g~~Lasgs--~DG~I~IWDlr 1254 (1344)
|+++ +.++.++.++.|+..|.+-+||+|-+. .+..| .+ .+..+|..+..+|-.. ....++++ ..+.|.+|++.
T Consensus 1198 vTSi-~idp~~~WlviGts~G~l~lWDLRF~~-~i~sw-~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1198 VTSI-VIDPWCNWLVIGTSRGQLVLWDLRFRV-PILSW-EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred eeEE-EecCCceEEEEecCCceEEEEEeecCc-eeecc-cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 9999 778899999999999999999999887 66666 33 4458899999888711 13444444 57889999999
Q ss_pred CCccceEEEecCC-------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE-------------
Q 000700 1255 NHKDAYLTIDAHR-------------------GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG------------- 1302 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~-------------------~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~------------- 1302 (1344)
++ ....++-..+ -......+...+.++.+|+.|+.|+.||.......
T Consensus 1274 ~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1274 TG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred cC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccc
Confidence 87 4444443220 11223344445678999999999999995322111
Q ss_pred --------EEecc---------------------------CCc-cccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1303 --------TIRYH---------------------------HPS-FMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1303 --------~l~~~---------------------------h~~-f~~~~~~~V~slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
.+.+. +.. -...|..+|+++++.... .+|++++.||.|+||.
T Consensus 1353 ~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1353 NSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00000 000 012466788888876544 6899999999999995
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-16 Score=178.16 Aligned_cols=271 Identities=19% Similarity=0.253 Sum_probs=211.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
.-|.|++|.++|+ ++||+++|.|.||+..+.+..+....|+ +.|.+++.. .+| .|++|+.|..|..||-.-
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~l--r~G-tllSGgKDRki~~Wd~~y-- 317 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD---GGVFSLCML--RDG-TLLSGGKDRKIILWDDNY-- 317 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC---CceEEEEEe--cCc-cEeecCccceEEeccccc--
Confidence 5699999999986 6799999999999998888877777999 999999984 455 455699999999999422
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEE
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1191 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L 1191 (1344)
.+... ..+++..+.++. ++ +.++-|++|...+.|..=.++++- .....+|.+. ...+ ...++.+++
T Consensus 318 ~k~r~----~elPe~~G~iRt----v~--e~~~di~vGTtrN~iL~Gt~~~~f--~~~v~gh~de-lwgl-a~hps~~q~ 383 (626)
T KOG2106|consen 318 RKLRE----TELPEQFGPIRT----VA--EGKGDILVGTTRNFILQGTLENGF--TLTVQGHGDE-LWGL-ATHPSKNQL 383 (626)
T ss_pred ccccc----ccCchhcCCeeE----Ee--cCCCcEEEeeccceEEEeeecCCc--eEEEEecccc-eeeE-EcCCChhhe
Confidence 11111 125566666665 22 344448888877777776777665 3444556564 8888 667888999
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeE
Q 000700 1192 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS 1271 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vt 1271 (1344)
++++.|+.+++|+ ..+ +.-.. .. ..++.++.|+|. | .++.|+..|...+.|..+. ..+..-.. ..+++
T Consensus 384 ~T~gqdk~v~lW~--~~k-~~wt~-~~---~d~~~~~~fhps--g-~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN--DHK-LEWTK-II---EDPAECADFHPS--G-VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLS 451 (626)
T ss_pred eeccCcceEEEcc--CCc-eeEEE-Ee---cCceeEeeccCc--c-eEEEeeccceEEEEecccc-eeEEEEec-CCceE
Confidence 9999999999999 333 22222 12 268899999999 7 9999999999999999985 45544444 88999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeC--CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1272 ALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1272 sla~spdg~~LasgS~Dg~I~Iwd~--~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
++.++|+|.+||.|+.|+.|+||.+ +|........ +. .++|+.+.|++|+++|.+.+.|-.|-.|.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k-~~------gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK-CS------GSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-ec------CceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999999999999984 4666666655 44 28999999999999999999999998883
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=191.32 Aligned_cols=285 Identities=17% Similarity=0.211 Sum_probs=199.2
Q ss_pred eEEEEEcCC---CCEEEEEECCCcEEEEECCCCcE------EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1034 TKTALLQPF---SPIVVAADENERIKIWNYEEDTL------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1034 I~~l~fspd---g~~Latgs~dg~I~VWd~~tg~~------l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
+.+..|++. ...|+.+.++|.|.++|.+.... +..+..|. ..|.++.|. +....|++++.|.++++
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~---nAifDl~wa--pge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK---NAIFDLKWA--PGESLLVSASGDSTIRP 126 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc---ceeEeeccC--CCceeEEEccCCceeee
Confidence 345667653 34899999999999999875422 35567888 899999994 57788999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEE-EECCCeEEEEECCCCc-------------------
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQ------------------- 1164 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla-gg~Dg~I~VWDl~~~~------------------- 1164 (1344)
||+... +..-. +.+.||...+.+ ++|.+.+..+++ ||.||.|.|||++-..
T Consensus 127 Wdvk~s--~l~G~---~~~~GH~~SvkS----~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 127 WDVKTS--RLVGG---RLNLGHTGSVKS----ECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred eeeccc--eeecc---eeecccccccch----hhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 999762 22111 237899999999 888887776555 5789999999987432
Q ss_pred -------eeeeeecCCCC---CCeeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCCeeeEeec----CCCCC---CCCeE
Q 000700 1165 -------QMVNPIPSSSD---CSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTR----PHTQQ---VERVV 1226 (1344)
Q Consensus 1165 -------~~v~~i~~~~~---~~VtsL~~~s~dg~~L~sGs~-DGsVrIwDlr~~~~~v~~~~----~~~~h---~~~I~ 1226 (1344)
+.+.....+.. +.|+.+ ++ .|...|++++. ||.|+|||+|......+.-. ....| .-.++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv-~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVV-LF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEE-EE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 00001111111 125555 44 46777887777 99999999997653221110 11112 34677
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEecCCCC--eEEEEEcCCCCEEEEEeCCCeEEEEeCCC--ceE
Q 000700 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGS--LSALAVHRHAPIIASGSAKQLIKVFSLEG--EQL 1301 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h~~~--Vtsla~spdg~~LasgS~Dg~I~Iwd~~g--~~l 1301 (1344)
++..... |.+|.+.+.|+.|++|+++..+ .++..+.++... -..-..+|++.++++|+.|...++|.++. ...
T Consensus 276 nL~lDss--Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 276 NLILDSS--GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EEEecCC--CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888777 8888888889999999998653 344444444221 12234689999999999999999999764 333
Q ss_pred EEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1302 GTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1302 ~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
..+.+ |. -.|++++|.|.. .-+++++.|..++||+
T Consensus 354 ~~l~G-ht-------~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 354 ALLLG-HT-------REVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hhhhC-cc-------eEEEEEeeccccCCCceeeccCcceEEEe
Confidence 44555 54 789999998765 4466779999999995
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=171.97 Aligned_cols=252 Identities=14% Similarity=0.302 Sum_probs=185.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC--CCeEEEEECCCe
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ--SGYLYASGEVSS 1154 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~--~~~Llagg~Dg~ 1154 (1344)
.-|.++.| ...|+.++||+.|++|+|||.....+...+...| +.|.+.|.. +.|-+. |..+++++.|++
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~r----V~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWR----VVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEE----EEecCccccceEEEEecCCc
Confidence 67999999 7899999999999999999987767777777554 568888877 788543 667777799999
Q ss_pred EEEEECCC--Cc------eeeeeecCCCCCCeeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCee-----eEee----c
Q 000700 1155 IMLWDLEK--EQ------QMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDML-----VCST----R 1216 (1344)
Q Consensus 1155 I~VWDl~~--~~------~~v~~i~~~~~~~VtsL~~~s~-dg~~L~sGs~DGsVrIwDlr~~~~~-----v~~~----~ 1216 (1344)
+.||.-.. .. ....++..... .|+++.|.+. .|-.+++++.||.+|||+.-..-.+ ...+ .
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99997521 11 02233444444 4999955433 3667999999999999987643211 1111 1
Q ss_pred CCCCCCCCeEEEEEecC-CCCCEEEEEECC-----CcEEEEECCCCc---cceEEEecCCCCeEEEEEcCCC----CEEE
Q 000700 1217 PHTQQVERVVGISFQPG-LDPAKIVSASQA-----GDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHA----PIIA 1283 (1344)
Q Consensus 1217 ~~~~h~~~I~sva~sp~-~~g~~Lasgs~D-----G~I~IWDlr~~~---~~v~tl~~h~~~Vtsla~spdg----~~La 1283 (1344)
+...+.....|+.|+|. .....|+.|+.+ +.++||...... ..+.++.+|..+|+.++|.|+- .+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 22245677889999876 235678888876 579999877654 3456777899999999999963 3899
Q ss_pred EEeCCCeEEEEeCCCce------------------EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1284 SGSAKQLIKVFSLEGEQ------------------LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1284 sgS~Dg~I~Iwd~~g~~------------------l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+++.|| |+||.+.... +..+.. ...|.+.|+.+.|+-.|..|++.|.||+|++|.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-----~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-----LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-----ccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 999999 9999965311 111221 235779999999999999999999999999994
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-16 Score=176.58 Aligned_cols=269 Identities=18% Similarity=0.301 Sum_probs=203.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE---eeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS---FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~---~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
..+....|+|.++-|++....|.+..|+++.+...++ |+.+. ..-|.+++| .++| -++||..+|.|.||+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTF--LENG-DVITGDSGGNILIWSKG 275 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc--ceEEEEEEE--cCCC-CEEeecCCceEEEEeCC
Confidence 4578889999888666666699999999998855544 55554 268999999 4444 57899999999999984
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee--cCCCCCCeeEEEEEcC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI--PSSSDCSISALTASQV 1186 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i--~~~~~~~VtsL~~~s~ 1186 (1344)
. .... +....|.+.|.+ ++.- .++.|++|+.|+.|..||- .-+ .++.+ +...+ +|..+ . ..
T Consensus 276 ~----~~~~---k~~~aH~ggv~~----L~~l-r~GtllSGgKDRki~~Wd~-~y~-k~r~~elPe~~G-~iRtv-~-e~ 338 (626)
T KOG2106|consen 276 T----NRIS---KQVHAHDGGVFS----LCML-RDGTLLSGGKDRKIILWDD-NYR-KLRETELPEQFG-PIRTV-A-EG 338 (626)
T ss_pred C----ceEE---eEeeecCCceEE----EEEe-cCccEeecCccceEEeccc-ccc-ccccccCchhcC-CeeEE-e-cC
Confidence 3 2332 223489999988 4433 5677888999999999993 222 33333 33333 47777 3 23
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h 1266 (1344)
.+. |+.|...+.|..=.+..+-... ..+|......++.+|+ .+.+++++.|+.+++|+ .. +++.+.. -
T Consensus 339 ~~d-i~vGTtrN~iL~Gt~~~~f~~~-----v~gh~delwgla~hps--~~q~~T~gqdk~v~lW~--~~-k~~wt~~-~ 406 (626)
T KOG2106|consen 339 KGD-ILVGTTRNFILQGTLENGFTLT-----VQGHGDELWGLATHPS--KNQLLTCGQDKHVRLWN--DH-KLEWTKI-I 406 (626)
T ss_pred CCc-EEEeeccceEEEeeecCCceEE-----EEecccceeeEEcCCC--hhheeeccCcceEEEcc--CC-ceeEEEE-e
Confidence 334 7788877777666666554222 1267789999999999 99999999999999999 22 4444433 3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1267 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1267 ~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
..+..|++|||.| .+|.|+..|...|.|.+...+.+++. . ..++++++|+|+|.+||.|+.|+.|.||
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-------~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-------NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-c-------CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 5678999999999 99999999999999988777777654 2 3799999999999999999999999998
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-17 Score=178.70 Aligned_cols=288 Identities=14% Similarity=0.198 Sum_probs=196.8
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeec
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1122 (1344)
+..+|++-..|.|++||+.+|+.+..|+++. ..++.+.|+.......+.+|+.||+||+||++.........
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~----- 111 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS----- 111 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-----
Confidence 3678999999999999999999999999999 88999999865577889999999999999998733332221
Q ss_pred ccCCCCCccccceEEEEecCCCeEEEEE----CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASG----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1198 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~~Llagg----~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG 1198 (1344)
...+.+... .+++-+-.++.+.+|. .+-.|.+||++..++.+..+...+...||++.|.+.+.++|++|+.||
T Consensus 112 ~~~~~~~~f---~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 112 WTQQSGTPF---ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred ccCCCCCcc---eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 333332211 1244443455555553 467899999999883366665444445999998888999999999999
Q ss_pred eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC-----------
Q 000700 1199 SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR----------- 1267 (1344)
Q Consensus 1199 sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~----------- 1267 (1344)
-|.+||+......-...... .|.+.|.++.|... ..+.|.+-+..++..+|++..+. +...+....
T Consensus 189 LvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~-~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~ 265 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSK-KYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDN 265 (376)
T ss_pred eEEeeecCCCcchhhHHHhh-cccceeeeeeeecC-CcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhh
Confidence 99999998654221111112 46688999999877 45679999999999999999873 433333210
Q ss_pred -CCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1268 -GSLSALAVHRHAPIIASGSA-KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1268 -~~Vtsla~spdg~~LasgS~-Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..+-..-...++..++.++. -+...++-+..........+...+-++|..-|.++.|...+.++.|||.||.+.+|.
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 01111111223445555444 455555543211111111101122334668899999999999999999999999994
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-18 Score=203.79 Aligned_cols=239 Identities=20% Similarity=0.387 Sum_probs=206.4
Q ss_pred cccccCCC----CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC
Q 000700 1024 ACWDTRFE----KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1099 (1344)
Q Consensus 1024 ~~Wd~~~~----~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1099 (1344)
..|+.++. ..+.++..-..++.+++|+.|..+.+|....-..+..+.+|. ..|.++.| +.+..+|++|+.+
T Consensus 17 r~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f--~~~E~Llaagsas 91 (825)
T KOG0267|consen 17 RVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---SPIESLTF--DTSERLLAAGSAS 91 (825)
T ss_pred ccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---Ccceeeec--CcchhhhcccccC
Confidence 35766653 567788887778899999999999999988777777899999 99999999 7888999999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1179 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt 1179 (1344)
|+|++||+.. . + .++++.+|...+.+ ++|+|.+.+.+.|+.|+.+++||.+... |...+.+|... |.
T Consensus 92 gtiK~wDlee--A--k---~vrtLtgh~~~~~s----v~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~v-v~ 158 (825)
T KOG0267|consen 92 GTIKVWDLEE--A--K---IVRTLTGHLLNITS----VDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRV-VD 158 (825)
T ss_pred Cceeeeehhh--h--h---hhhhhhccccCcce----eeeccceEEeccccccccceehhhhccC-ceeeecCCcce-eE
Confidence 9999999965 2 2 23678999998888 8999999999888999999999999888 99999996554 66
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccc
Q 000700 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1259 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~ 1259 (1344)
.+ .+.|+|.+++.|+.|.++++||.+.++ +.. .+..|.+.+.++.++|. .-.+++|+.|++|++||+++. +.
T Consensus 159 ~l-~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~---ef~~~e~~v~sle~hp~--e~Lla~Gs~d~tv~f~dletf-e~ 230 (825)
T KOG0267|consen 159 VL-RLSPDGRWVASGGEDNTVKIWDLTAGK-LSK---EFKSHEGKVQSLEFHPL--EVLLAPGSSDRTVRFWDLETF-EV 230 (825)
T ss_pred EE-eecCCCceeeccCCcceeeeecccccc-ccc---ccccccccccccccCch--hhhhccCCCCceeeeecccee-EE
Confidence 66 789999999999999999999999887 554 44567799999999999 889999999999999999987 67
Q ss_pred eEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000700 1260 YLTIDAHRGSLSALAVHRHAPIIASGSAK 1288 (1344)
Q Consensus 1260 v~tl~~h~~~Vtsla~spdg~~LasgS~D 1288 (1344)
+.........|.+..|++++..+++|...
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCccCCceeeeecCCceeeecCchh
Confidence 77777778899999999999999998654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-17 Score=186.47 Aligned_cols=283 Identities=16% Similarity=0.260 Sum_probs=222.3
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1025 ~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
+|.......|..++|-|||..|+.+. +..+.|||..+|..+.++++|. ..|.+++| +.||..+++|+.|+.|.+
T Consensus 6 ~~r~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHK---DtVycVAy--s~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 6 TWRDKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAY--AKDGKRFASGSADKSVII 79 (1081)
T ss_pred hhhcccccchheeEECCCCceEEEec-CCEEEEEeCCCccccccccccc---ceEEEEEE--ccCCceeccCCCceeEEE
Confidence 35555556899999999999888876 6789999999999999999999 99999999 799999999999999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
|.-.. +|. + --.|...|.+ +.|+|-+..+++++-+ ..-+|...... +...+ ....|.+. .|
T Consensus 80 W~~kl-EG~--L------kYSH~D~IQC----MsFNP~~h~LasCsLs-dFglWS~~qK~--V~K~k--ss~R~~~C-sW 140 (1081)
T KOG1538|consen 80 WTSKL-EGI--L------KYSHNDAIQC----MSFNPITHQLASCSLS-DFGLWSPEQKS--VSKHK--SSSRIICC-SW 140 (1081)
T ss_pred ecccc-cce--e------eeccCCeeeE----eecCchHHHhhhcchh-hccccChhhhh--HHhhh--hheeEEEe-ee
Confidence 98643 121 1 1357788877 8999988888877632 35688776554 22222 23346666 67
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC---CCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~---~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
..||.+++.|-.||+|.+-+....+ .++.- ...|.+++|.+++|+|. +....+++.....++.++.+.. +.+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~gEe-k~~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Ig 216 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNGEE-KVKIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIG 216 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCCCc-ceEEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeec
Confidence 8899999999999999987544333 44433 33467789999999997 2235788888888888888873 3443
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
.-+.-.-...|+.+.++|.++..|+.|+.+++|..+|-.+.++.. .+ ..|+.++.+|++++++.|+.||+|.
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~-~D-------~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE-QD-------SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc-cc-------eeEEEEEEccCCceEEEEEccCeee
Confidence 333333456789999999999999999999999999999988876 44 7899999999999999999999998
Q ss_pred EcC
Q 000700 1342 IHS 1344 (1344)
Q Consensus 1342 IWd 1344 (1344)
-|+
T Consensus 289 CyN 291 (1081)
T KOG1538|consen 289 CYN 291 (1081)
T ss_pred hhh
Confidence 764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=174.46 Aligned_cols=247 Identities=18% Similarity=0.283 Sum_probs=202.5
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC
Q 000700 1064 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1064 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~ 1143 (1344)
+.++.+.+|. .+|+.++. ......+.+++.|.+-+||.++. +.+.. .+.||.+.|++ +.|++.+
T Consensus 139 ~lvre~~GHk---DGiW~Vaa--~~tqpi~gtASADhTA~iWs~Es--g~CL~-----~Y~GH~GSVNs----ikfh~s~ 202 (481)
T KOG0300|consen 139 RLVRELEGHK---DGIWHVAA--DSTQPICGTASADHTARIWSLES--GACLA-----TYTGHTGSVNS----IKFHNSG 202 (481)
T ss_pred eehhhhcccc---cceeeehh--hcCCcceeecccccceeEEeecc--cccee-----eecccccceee----EEecccc
Confidence 4566788999 89999988 45667899999999999999977 54443 48999999999 8999999
Q ss_pred CeEEEEECCCeEEEEE------CCCCc---------------------------------eeeeeecCCCCCCeeEEEEE
Q 000700 1144 GYLYASGEVSSIMLWD------LEKEQ---------------------------------QMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWD------l~~~~---------------------------------~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
..+++++.|++-.||. +.+.. .++..+.+|..- |.+. -|
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v-V~a~-dW 280 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV-VSAC-DW 280 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc-eEeh-hh
Confidence 9999999999999996 11100 123344454443 5555 44
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
-..|+.+++++.|.+..+||+.+++ ++. .+.||....+.++-+|. .+++++.+.|.+.++||++..-..+..|+
T Consensus 281 L~gg~Q~vTaSWDRTAnlwDVEtge-~v~---~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 281 LAGGQQMVTASWDRTANLWDVETGE-VVN---ILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred hcCcceeeeeeccccceeeeeccCc-eec---cccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeec
Confidence 5678999999999999999999998 554 45688899999999999 99999999999999999997657789999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1265 AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1265 ~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g--~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
+|...|+++.|.-+ ..+++|+.|.+|+|||+.. ..+.+++. .++++.++.+..+..+|.--.+..|++
T Consensus 355 GHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt---------dS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT---------DSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred ccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec---------CCccceeEeecCCceEEeccCCceEEE
Confidence 99999999999865 4678999999999999653 56777775 268999999988889998888889999
Q ss_pred cC
Q 000700 1343 HS 1344 (1344)
Q Consensus 1343 Wd 1344 (1344)
||
T Consensus 425 fD 426 (481)
T KOG0300|consen 425 FD 426 (481)
T ss_pred Ee
Confidence 86
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=191.49 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=187.9
Q ss_pred CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE
Q 000700 1071 NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1150 (1344)
Q Consensus 1071 ~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg 1150 (1344)
.|. .+-+.++| .++|.+|++++.||.|++|+.......++.+ ..+...|.+ +...++++++|+
T Consensus 11 aht---~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti------~~~g~~v~~------ia~~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHT---GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETI------DISGELVSS------IACYSNHFLTGS 73 (933)
T ss_pred hcc---CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchh------hccCceeEE------EeecccceEEee
Confidence 466 67889999 7899999999999999999986633333322 213333433 334577999999
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000700 1151 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1151 ~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~ 1230 (1344)
.+++|.+|.+..+. ...+-....-++.++ .++.+|+++++|+.|-.|++.+..... ..+ ..++|.++|.++.+
T Consensus 74 ~~~tv~~y~fps~~--~~~iL~Rftlp~r~~-~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~---~lrgh~apVl~l~~ 146 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGE--EDTILARFTLPIRDL-AVSGSGKMIAAGSDDTAVKLLNLDDSS-QEK---VLRGHDAPVLQLSY 146 (933)
T ss_pred ccceEEEeeCCCCC--ccceeeeeeccceEE-EEecCCcEEEeecCceeEEEEeccccc-hhe---eecccCCceeeeeE
Confidence 99999999998776 222222233357888 677899999999999999999988766 333 33477899999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceE
Q 000700 1231 QPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQL 1301 (1344)
Q Consensus 1231 sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h--------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l 1301 (1344)
+|. +.+||+.+.||.|++||+.++ ....++.+- ...++.++|||++..++..+.|+.|++|+.. ++..
T Consensus 147 ~p~--~~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 147 DPK--GNFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred cCC--CCEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 999 999999999999999999987 555555432 3356789999998888888999999999954 5666
Q ss_pred EEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1302 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1302 ~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..++. .. +...+.+++|+|.|+|||+++.||.|.|||
T Consensus 224 f~Lr~-~~-----~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 224 FKLRD-KL-----SSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred eeecc-cc-----cccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 66665 21 224599999999999999999999999997
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-18 Score=185.15 Aligned_cols=236 Identities=17% Similarity=0.293 Sum_probs=184.7
Q ss_pred eeCCCCCCCCeEEEEEEeeCCC-CEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEE
Q 000700 1069 FDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY 1147 (1344)
Q Consensus 1069 ~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll 1147 (1344)
+.+|. .+|.+++= +|.. ..+++|+.||.|+|||+.. .. +...+..|.+.|++ +++.+ +.++
T Consensus 62 L~gHr---dGV~~lak--hp~~ls~~aSGs~DG~VkiWnlsq--R~-----~~~~f~AH~G~V~G----i~v~~--~~~~ 123 (433)
T KOG0268|consen 62 LDGHR---DGVSCLAK--HPNKLSTVASGSCDGEVKIWNLSQ--RE-----CIRTFKAHEGLVRG----ICVTQ--TSFF 123 (433)
T ss_pred ccccc---cccchhhc--CcchhhhhhccccCceEEEEehhh--hh-----hhheeecccCceee----EEecc--cceE
Confidence 45677 78888887 4554 7899999999999999965 11 22568899999999 55554 8899
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1148 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1148 agg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
++|+|++|+.|-+... .+.++.+.. .+..+ .....++.+++++. .|.|||.+-.. +++.+..- ...|.+
T Consensus 124 tvgdDKtvK~wk~~~~--p~~tilg~s--~~~gI-dh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG---~Dti~s 192 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP--PLHTILGKS--VYLGI-DHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWG---ADSISS 192 (433)
T ss_pred EecCCcceeeeeccCC--cceeeeccc--ccccc-ccccccccccccCc--eeeecccccCC-ccceeecC---CCceeE
Confidence 9999999999998763 467776633 36777 34456778888775 59999997665 44444222 367999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CceEEEEe
Q 000700 1228 ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIR 1305 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~--g~~l~~l~ 1305 (1344)
+.|+|. ....|++|..|+.|.+||+|.. .+++.+.. ...-+.++|+|.+-.+++|++|..++.||+. ...+...+
T Consensus 193 vkfNpv-ETsILas~~sDrsIvLyD~R~~-~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 193 VKFNPV-ETSILASCASDRSIVLYDLRQA-SPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred EecCCC-cchheeeeccCCceEEEecccC-Cccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 999998 6778889989999999999998 67665542 3345789999988899999999999999964 45555555
Q ss_pred ccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1306 YHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1306 ~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+ |. +.|.++.|+|.|+-+++||.|.+|+||.
T Consensus 270 d-hv-------sAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 270 D-HV-------SAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred c-cc-------eeEEEeccCCCcchhccccccceEEEee
Confidence 5 44 8999999999999999999999999984
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-15 Score=169.87 Aligned_cols=259 Identities=11% Similarity=0.127 Sum_probs=181.5
Q ss_pred CCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-ECCCeEEEEeccC
Q 000700 1032 KGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYD 1109 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~L-atgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~IrIWdl~~ 1109 (1344)
..+..++|+|+++.+ ++++.++.|++||..+++.+..+..+. .+..++| +++++.++++ +.++.|++||+.+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----DPELFAL--HPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----CccEEEE--CCCCCEEEEEcCCCCeEEEEECCC
Confidence 447789999999976 566788999999999998887776544 3566777 6788877655 5689999999965
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCC-eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg-~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
.. .+ ..+.. ...+.+ ++|++++..+++++.++ .+.+||..+.. .+..+.... .+.++ .+++++
T Consensus 105 --~~--~~---~~~~~-~~~~~~----~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg 168 (300)
T TIGR03866 105 --RK--VL---AEIPV-GVEPEG----MAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVLVDQ--RPRFA-EFTADG 168 (300)
T ss_pred --Ce--EE---eEeeC-CCCcce----EEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEEcCC--CccEE-EECCCC
Confidence 22 12 11221 122334 88999999998887664 57788998877 655544322 24566 567888
Q ss_pred CEEEEE-ECCCeEEEEECCCCCeeeEeecCC--CCC--CCCeEEEEEecCCCCCEEEE-EECCCcEEEEECCCCccceEE
Q 000700 1189 GQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH--TQQ--VERVVGISFQPGLDPAKIVS-ASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1189 ~~L~sG-s~DGsVrIwDlr~~~~~v~~~~~~--~~h--~~~I~sva~sp~~~g~~Las-gs~DG~I~IWDlr~~~~~v~t 1262 (1344)
+.++++ ..+|.|++||+++++ ....+... ..+ ......++|+|+ ++.+++ .+.++.|.+||++++ +.+..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~d--g~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKD--GKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCC--CCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 887554 469999999999876 33332111 011 123456889998 777544 455678999999876 55554
Q ss_pred EecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1263 IDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1263 l~~h~~~Vtsla~spdg~~Lasg-S~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
+. +...+.+++|+|++.+|+++ +.++.|+|||. +++.+..++. . ...++++|+|
T Consensus 245 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~--------~~~~~~~~~~ 300 (300)
T TIGR03866 245 LL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-G--------RLPWGVVVRP 300 (300)
T ss_pred EE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-c--------cccceeEeCC
Confidence 43 44578999999999998876 46899999995 4666777765 2 3558888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=171.17 Aligned_cols=281 Identities=18% Similarity=0.303 Sum_probs=204.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCC------------cEEEEeeCCCCCCCCeEEEEEE-----eeCCCCEEEEE
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEED------------TLLNSFDNHDFPDKGISKLCLV-----NELDVSLLLVA 1096 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg------------~~l~~~~~h~~~~~~ItsL~f~-----ns~d~~~L~tg 1096 (1344)
...+.|+|||..|++-+.|..+++|++... +....++ -..+..|.+-+|. -.|+..++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE--eccCCEEEEEEeeeccccCCCccceeeec
Confidence 567889999999999999999999987521 1111111 1234567777774 24678899999
Q ss_pred ECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECC-CCcee-ee-ee---
Q 000700 1097 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLE-KEQQM-VN-PI--- 1170 (1344)
Q Consensus 1097 s~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~-~~~~~-v~-~i--- 1170 (1344)
+.+.-|++||..+ ++.+ .+++. -+|...+.. +.+++|+++|.+|++| ..+.|++||+. .+..+ +. ++
T Consensus 130 sr~~PIh~wdaft--G~lr--aSy~~-ydh~de~ta-AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 130 SRDQPIHLWDAFT--GKLR--ASYRA-YDHQDEYTA-AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred cccCceeeeeccc--cccc--cchhh-hhhHHhhhh-heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 9999999999987 3322 22232 245555554 4569999999998875 45789999994 33301 11 11
Q ss_pred cCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEE
Q 000700 1171 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQ 1249 (1344)
Q Consensus 1171 ~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG~I~ 1249 (1344)
+....+.|.++++.+.+...++.|+....+-||.-..+. +... ..+|.+.|+.+.|.++ |+.|.+|+. |-.|.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~l---lggh~gGvThL~~~ed--Gn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQL---LGGHGGGVTHLQWCED--GNKLFSGARKDDKIL 276 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-ceee---ecccCCCeeeEEeccC--cCeecccccCCCeEE
Confidence 112234467775555566689999999998888776666 3333 2378899999999999 889998875 67899
Q ss_pred EEECCCCccceEEEecCCC-CeE--EEEEcCCCCEEEEEeCCCeEEEEeCC--CceEEEEeccCCccccccCCCeEEEEE
Q 000700 1250 FLDIRNHKDAYLTIDAHRG-SLS--ALAVHRHAPIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTF 1324 (1344)
Q Consensus 1250 IWDlr~~~~~v~tl~~h~~-~Vt--sla~spdg~~LasgS~Dg~I~Iwd~~--g~~l~~l~~~h~~f~~~~~~~V~slaf 1324 (1344)
.||+|..+.++..+..|.+ .-. -....|++++|++|+.||.|++||+. |+.+..+.. |+ ..++.+++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-~s-------d~vNgvsl 348 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-YS-------DTVNGVSL 348 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-cc-------ccccceec
Confidence 9999998888888888765 222 34567899999999999999999965 565555555 44 78999999
Q ss_pred ecCCCEEEEEECC
Q 000700 1325 HPYQVLLAAGSAD 1337 (1344)
Q Consensus 1325 spdg~~Lasgs~D 1337 (1344)
+|--.++|+++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888887643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=169.63 Aligned_cols=206 Identities=21% Similarity=0.332 Sum_probs=155.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCC--ce------eEEeeeecccCCCCCccccceEEEEecC-CCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD--KQ------KLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLY 1147 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~--~~------~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~Ll 1147 (1344)
+.|+++... ...|.++++|+.||.|.+||+..... .. ..+-....-.+|...|.+ +.|-|- .+.+.
T Consensus 44 GsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss----~~WyP~DtGmFt 118 (397)
T KOG4283|consen 44 GSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISS----AIWYPIDTGMFT 118 (397)
T ss_pred Cccceeeec-cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeee----eEEeeecCceee
Confidence 788888884 35789999999999999999965321 11 111112233466777776 777765 55666
Q ss_pred EEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC---CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1148 ASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV---HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1148 agg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~---dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
+++.|.+++|||..+-+ ....++.... |.+- ..+| ...++++|..|-.|++.|+.++. ... .+.||...
T Consensus 119 ssSFDhtlKVWDtnTlQ-~a~~F~me~~--VYsh-amSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH---~LsGHr~~ 190 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQ-EAVDFKMEGK--VYSH-AMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSH---TLSGHRDG 190 (397)
T ss_pred cccccceEEEeecccce-eeEEeecCce--eehh-hcChhhhcceEEEEecCCCcEEEEeccCCc-cee---eeccccCc
Confidence 66799999999999988 6666664322 4443 2222 24578899999999999999987 444 34588899
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe--------------cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--------------AHRGSLSALAVHRHAPIIASGSAKQL 1290 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~--------------~h~~~Vtsla~spdg~~LasgS~Dg~ 1290 (1344)
|.+|.|+|. ..-.|++|+.||.|++||+|....+...+. .|.+.|.+++|..++.++++.+.|..
T Consensus 191 vlaV~Wsp~-~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPS-SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred eEEEEeccC-ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999998 566789999999999999996533444433 46678999999999999999999999
Q ss_pred EEEEeC
Q 000700 1291 IKVFSL 1296 (1344)
Q Consensus 1291 I~Iwd~ 1296 (1344)
+++|+.
T Consensus 270 ~r~wn~ 275 (397)
T KOG4283|consen 270 IRVWNM 275 (397)
T ss_pred eEEeec
Confidence 999994
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=185.90 Aligned_cols=256 Identities=16% Similarity=0.249 Sum_probs=187.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~--~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1106 (1344)
.|...|..+.|-|.+..|++++.|.++++||+++++.+.. +.+|. ..|.+++|.+ .+...+++|+.||.|.|||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~---~SvkS~cf~~-~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT---GSVKSECFMP-TNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc---cccchhhhcc-CCCcceeeccCCCcEEEEE
Confidence 4667899999999777999999999999999999888777 88999 8999999963 5778999999999999999
Q ss_pred ccCCCCc--e------------------eEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCce
Q 000700 1107 DYDQKDK--Q------------------KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQ 1165 (1344)
Q Consensus 1107 l~~~~~~--~------------------~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-Dg~I~VWDl~~~~~ 1165 (1344)
+...... . .+....+....+...+.+... +.+.+|+..|+++|. |+.|+|||+++..
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT-vv~fkDe~tlaSaga~D~~iKVWDLRk~~- 251 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT-VVLFKDESTLASAGAADSTIKVWDLRKNY- 251 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE-EEEEeccceeeeccCCCcceEEEeecccc-
Confidence 8642200 0 000011122234444544433 344468889999876 9999999999765
Q ss_pred eee--------eecCC--CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-eeEeecCCCCCCC--CeEEEEEec
Q 000700 1166 MVN--------PIPSS--SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQQVE--RVVGISFQP 1232 (1344)
Q Consensus 1166 ~v~--------~i~~~--~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~-~v~~~~~~~~h~~--~I~sva~sp 1232 (1344)
+.. .+..+ ..-.++++ ..+..|.++.+.|.|++|++|+++.... .+.. +.++.. --..-..+|
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL-~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~---~sg~~~~sf~vks~lSp 327 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNL-ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE---FSGKLNSSFYVKSELSP 327 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEE-EecCCCCeEEEEecCCcEEEEeccccCcCchhh---ccCcccceeeeeeecCC
Confidence 221 12222 12247888 5666788888888899999999986541 2222 222211 112234578
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 000700 1233 GLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1233 ~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~ 1296 (1344)
+ +.++++|+.|....+|.+.+...+...+.+|.-.|++++|.|... -+++++.|..++||++
T Consensus 328 d--~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 328 D--DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred C--CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 8 999999999999999999988788888999999999999988432 3555599999999995
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=184.39 Aligned_cols=241 Identities=15% Similarity=0.213 Sum_probs=187.7
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
.-|.++.. +.....++||+. |.|+|||+.....+ ..+.....+ ....-+++ +...+++..|++||.-.++.
T Consensus 420 EvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg~k-~PvsqLdcl-~rdnyiRS----ckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 420 EVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPGNK-SPVSQLDCL-NRDNYIRS----CKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred cEEEEEEe--cCCcceeEecCC-CeEEEeeccCCCCC-Ccccccccc-Ccccceee----eEecCCCceEEeccccceee
Confidence 45666666 567788999874 67999999763222 222111111 12334555 67789999999999999999
Q ss_pred EEECCCCceeeeeecC-CCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000700 1157 LWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1157 VWDl~~~~~~v~~i~~-~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~ 1235 (1344)
|||+.... ....... .......++ ..++|.++..+++.||.|.|||+++.. +++ .+.||...+.||.++++
T Consensus 491 iWDLAapT-prikaeltssapaCyAL-a~spDakvcFsccsdGnI~vwDLhnq~-~Vr---qfqGhtDGascIdis~d-- 562 (705)
T KOG0639|consen 491 IWDLAAPT-PRIKAELTSSAPACYAL-AISPDAKVCFSCCSDGNIAVWDLHNQT-LVR---QFQGHTDGASCIDISKD-- 562 (705)
T ss_pred eeeccCCC-cchhhhcCCcchhhhhh-hcCCccceeeeeccCCcEEEEEcccce-eee---cccCCCCCceeEEecCC--
Confidence 99998876 3222111 112225666 678999999999999999999999877 665 45578899999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCcccccc
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1236 g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~ 1315 (1344)
|..|-+|+-|.+|+-||+|.+. .+...+ ....|.++..+|.+.+++.|-.++.+.|...++.....+.. |+
T Consensus 563 GtklWTGGlDntvRcWDlregr-qlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl-he------ 633 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGR-QLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL-HE------ 633 (705)
T ss_pred CceeecCCCccceeehhhhhhh-hhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecc-cc------
Confidence 9999999999999999999883 333322 35689999999999999999999999999988887777766 65
Q ss_pred CCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.|.++.|.+.|+++++.+.|+.+..|.
T Consensus 634 -ScVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 634 -SCVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred -cEEEEEEecccCceeeecCchhhhhhcc
Confidence 8999999999999999999999998883
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=180.19 Aligned_cols=269 Identities=14% Similarity=0.239 Sum_probs=198.2
Q ss_pred EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE--ECCCeEEEEeccCCCCceeEEeeeeccc
Q 000700 1047 VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA--SCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1124 (1344)
Q Consensus 1047 atgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg--s~DG~IrIWdl~~~~~~~~lvs~~~~l~ 1124 (1344)
.+++....+++||....+....+-.+.++ ..+.+++| +. .+.|+++ +.|..|++|.-....+....+ +...
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w--~~-~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~---~k~~ 78 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNW--QR-RNFLVVASMAGDKVMRIKEKDGKTPEVPRV---RKLT 78 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCC-Ccceeeec--cc-cceEEEeecCCceeEEEecccCCCCcccee---eccc
Confidence 34445678999999877666666655543 35899999 33 3335555 467889999864432223322 2222
Q ss_pred CCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1204 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwD 1204 (1344)
+. .-.| ++.....-++++||..+.|+|||++... +.+.++.|.+. |+++ .+.....+|++++..|.|.+..
T Consensus 79 gd--~~~C----v~~~s~S~y~~sgG~~~~Vkiwdl~~kl-~hr~lkdh~st-vt~v-~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 79 GD--NAFC----VACASQSLYEISGGQSGCVKIWDLRAKL-IHRFLKDHQST-VTYV-DYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred cc--hHHH----HhhhhcceeeeccCcCceeeehhhHHHH-HhhhccCCcce-eEEE-EecCCcceeEEeccCCcEEEEe
Confidence 22 1122 3333446889999999999999999777 77778888755 9999 6667788999999999999999
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEE
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIA 1283 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~La 1283 (1344)
+.++. ....+ .+ +....|.-+.++|. ...+|.+++.+|.|.+||+........-...|..+...++|+|... +|+
T Consensus 150 ~~t~~-~tt~f-~~-~sgqsvRll~ys~s-kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 150 TKTKQ-KTTTF-TI-DSGQSVRLLRYSPS-KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred cccCc-cccce-ec-CCCCeEEEeecccc-cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 98876 23333 11 22345668999998 5667889999999999999987444445567999999999999655 788
Q ss_pred EEeCCCeEEEEeCCCc-eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1284 SGSAKQLIKVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1284 sgS~Dg~I~Iwd~~g~-~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.+.|+.|.+||...+ ....+.+ + .+.+.++|.++|.+|++|+..|.|..||
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y--~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTY--S-------HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred EecccceEEEeecccccccceeee--c-------CCcceeeecCCceEEEeecCCceEEEEe
Confidence 8999999999997543 4445555 2 5789999999999999999999999986
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-16 Score=180.77 Aligned_cols=237 Identities=22% Similarity=0.327 Sum_probs=189.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCC-CCccccceEEEEecCCCeEEEEECCCeE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGEVSSI 1155 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~s~~~~v~ws~~~~~Llagg~Dg~I 1155 (1344)
..|++|+| +.+.+.||++-.+|.|.||++...- -.+. .+.++. ..|.+ ++|. +++.|++.|.+|.|
T Consensus 26 s~I~slA~--s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~-----vi~g~~drsIE~----L~W~-e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 26 SEIVSLAY--SHKSNQLAVSRTDGNIEIWNLSNNW-FLEP-----VIHGPEDRSIES----LAWA-EGGRLFSSGLSGSI 92 (691)
T ss_pred cceEEEEE--eccCCceeeeccCCcEEEEccCCCc-eeeE-----EEecCCCCceee----EEEc-cCCeEEeecCCceE
Confidence 68999999 6788889999999999999997621 1222 244443 44555 8998 78999999999999
Q ss_pred EEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCC
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~ 1235 (1344)
.-||+.+.+ ....+....+. |+++ +..+.+..++.||.||.+..++...++ +.-.+.+...++.|.+++|+|+
T Consensus 93 ~EwDl~~lk-~~~~~d~~gg~-IWsi-ai~p~~~~l~IgcddGvl~~~s~~p~~--I~~~r~l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 93 TEWDLHTLK-QKYNIDSNGGA-IWSI-AINPENTILAIGCDDGVLYDFSIGPDK--ITYKRSLMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred EEEecccCc-eeEEecCCCcc-eeEE-EeCCccceEEeecCCceEEEEecCCce--EEEEeecccccceEEEEEecCC--
Confidence 999999998 77777765554 9999 677889999999999987777777665 2222244445689999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCccceEEEe-------c-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEec
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTID-------A-HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1236 g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-------~-h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
+..+++|+.||.|++||...+ ..+.... . ...-|+++.+-.+ ..|++|...|+|++|| ..|..+..++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~-~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSG-QTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred ccEEEecccCceEEEEEcCCC-ceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh
Confidence 999999999999999999987 4444221 1 2234778887744 4789999999999999 67888888888
Q ss_pred cCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1307 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1307 ~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
|. +.|.+++..+++.+++++|.|+.|.-|
T Consensus 244 -h~-------adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 244 -HD-------ADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred -hh-------cceeEEEEcCCCCeEEEccCCCceEEE
Confidence 76 889999999999999999999988654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=175.58 Aligned_cols=184 Identities=23% Similarity=0.434 Sum_probs=149.8
Q ss_pred ECCCeEEEEECCCCc---------------eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000700 1150 GEVSSIMLWDLEKEQ---------------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1214 (1344)
Q Consensus 1150 g~Dg~I~VWDl~~~~---------------~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~ 1214 (1344)
+..|.|.|||+.... .++.++.+|... =..+.|.+.....+++|..-+.|++|...++. -..-
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E-Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-W~vd 249 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE-GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-WKVD 249 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc-ceeeecccccccccccCccccceEeeeeccCc-eeec
Confidence 578999999976321 255666676644 67885544345568888888999999998865 3333
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 000700 1215 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1293 (1344)
Q Consensus 1215 ~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~I 1293 (1344)
-..+.+|+..|-.++|+|. ....|++||.||+|+|||+|.+. +.-...+.|.+.|+.|.|+.+..+||+|+.||+++|
T Consensus 250 ~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred CccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence 3367789999999999998 78899999999999999999872 333444889999999999999999999999999999
Q ss_pred EeCC----CceEEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1294 FSLE----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1294 wd~~----g~~l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
||+. +.++..++. |. .+|+++.|||+. ..++++|.|..|.|||
T Consensus 329 wDLR~~~~~~pVA~fk~-Hk-------~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKY-HK-------APITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred EEhhhccCCCcceeEEe-cc-------CCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 9953 678889998 76 899999999986 6788888999999997
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=174.60 Aligned_cols=259 Identities=18% Similarity=0.236 Sum_probs=191.0
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC-Ce
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GY 1145 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~-~~ 1145 (1344)
..++-+. ++|++++|++..+..++++|..-|.|-+||+........ .+..+..|..+|.+ +.|+|.+ ..
T Consensus 180 ~v~kv~~---~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~----l~F~P~n~s~ 249 (498)
T KOG4328|consen 180 NVAKVTD---RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSG----LKFSPANTSQ 249 (498)
T ss_pred ceeEecc---cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccc----eEecCCChhh
Confidence 3445555 899999998766778999999999999999953211111 12346789999998 8888764 57
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCC-CCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~~~v~~i~~~~-~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
+++++.||+|+.-|+++.. ....+.... ...+.++ -++.+...++.|..=|...+||+|++......+ .-|...
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~-d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~---~lh~kK 324 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSL-DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL---RLHKKK 324 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeec-cccCCCccEEEeecccceEEEEeecCCccchhh---hhhhcc
Confidence 8888999999999999765 322222211 2224455 455566677777777799999999887544433 345679
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCc---cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC----
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE---- 1297 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~---~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~---- 1297 (1344)
|++|+++|. ...+|+|+|.|++++|||+|... .++...-.|...|.+..|+|.+--|+|.+.|..|+|||..
T Consensus 325 I~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 325 ITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred cceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 999999998 77899999999999999999653 2334445699999999999998889999999999999962
Q ss_pred -CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1298 -GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1298 -g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
...+..+. |..+.+.+.. ....+|+|+..++++|..-..|-|||
T Consensus 404 ~~~p~~~I~--Hn~~t~RwlT-~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 404 KDEPLGTIP--HNNRTGRWLT-PFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCccceee--ccCccccccc-chhheeCCCccEEEEeccCcceeEEc
Confidence 23344443 6655544433 34568999999999998776777764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=165.12 Aligned_cols=255 Identities=13% Similarity=0.167 Sum_probs=175.0
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeE
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1146 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~L 1146 (1344)
..+++|. +.|++++| +.||.+|+|++.|++|++|++.+...+.. .+.+.--... -...+.|.||-..+
T Consensus 80 ~~LKgH~---~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--r~~R~nve~d-----hpT~V~FapDc~s~ 147 (420)
T KOG2096|consen 80 SVLKGHK---KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH--RCIRQNVEYD-----HPTRVVFAPDCKSV 147 (420)
T ss_pred hhhhccC---CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh--hHhhccccCC-----CceEEEECCCcceE
Confidence 3577888 89999999 78999999999999999999976222111 0111100001 11238899998888
Q ss_pred EEEE-CCCeEEEEECCCCce---eee-------eecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000700 1147 YASG-EVSSIMLWDLEKEQQ---MVN-------PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1215 (1344)
Q Consensus 1147 lagg-~Dg~I~VWDl~~~~~---~v~-------~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~ 1215 (1344)
++.. ...++++|-+...+. ... .+...+...|.++ -...++.+|++++.|..|.+||++ ++ ....+
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~i-GiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~i 224 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINI-GIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSI 224 (420)
T ss_pred EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEE-eecCCceEEEEecCCCcEEEEecC-Cc-eeeee
Confidence 7775 456799997654320 000 1222223335555 334567899999999999999999 44 34443
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-------cceEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 000700 1216 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------DAYLTIDAHRGSLSALAVHRHAPIIASGSAK 1288 (1344)
Q Consensus 1216 ~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-------~~v~tl~~h~~~Vtsla~spdg~~LasgS~D 1288 (1344)
.+. ...-+..+++|+ |+++++++..-.|++|.+--.+ ..+..+++|...|..++|+++...+++.|.|
T Consensus 225 dtn---q~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 225 DTN---QSSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred ccc---cccccceeeCCC--CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 332 245667889999 9999999999999999975322 3456788999999999999999999999999
Q ss_pred CeEEEEeCC-----CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1289 QLIKVFSLE-----GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1289 g~I~Iwd~~-----g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
|+++|||++ ++....++. -+-++....+.-..++.+|.|..||.+. ...+++|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~-g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKE-GSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred CcEEEeeccceEecCCCchHhhc-CCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 999999964 222222322 1112222334445899999999998765 3355554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-16 Score=175.14 Aligned_cols=265 Identities=18% Similarity=0.246 Sum_probs=199.8
Q ss_pred CCeEEEEEcCCCCEEEEE--ECCCcEEEEECC--CCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1032 KGTKTALLQPFSPIVVAA--DENERIKIWNYE--EDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latg--s~dg~I~VWd~~--tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.++.++.|+.... |+++ +.|..|++|.-. +++.-..-+... ..-.|+.. .....++++||..|.|+|||+
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g---d~~~Cv~~--~s~S~y~~sgG~~~~Vkiwdl 108 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG---DNAFCVAC--ASQSLYEISGGQSGCVKIWDL 108 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeecccc---chHHHHhh--hhcceeeeccCcCceeeehhh
Confidence 4588999987765 4444 467788888543 222211111111 22233333 123489999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. +++ .+.+++|...|++ +.|+-.+.+|++++..|.|.|..+.++. ...++....+..|.-+.+....
T Consensus 109 ~~-----kl~--hr~lkdh~stvt~----v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 109 RA-----KLI--HRFLKDHQSTVTY----VDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred HH-----HHH--hhhccCCcceeEE----EEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeeccccc
Confidence 64 111 2558899998888 8999899999999999999999999988 7777776655546667544445
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
..+|.+++.+|.|.+||......... ....|..+...|+|+|. +..+|++.+.|..|.+||++.. .....+. ..
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s~-~s~~~l~-y~ 250 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRSQ-ASTDRLT-YS 250 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCC-ccceEEEecccceEEEeecccc-cccceee-ec
Confidence 56788899999999999987763322 34568899999999998 7889999999999999999976 4555554 45
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC--ceEEEEeccCCccccccCCCeEEEEEecCC
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g--~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
.+.++++|.++|.+|++|+..|.|..||+.+ .++..+.. |. ..|++++|-|..
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa-h~-------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA-HD-------ASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee-cc-------cceeEEEeeecc
Confidence 6899999999999999999999999999764 56677776 65 679999998764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=164.06 Aligned_cols=291 Identities=14% Similarity=0.185 Sum_probs=210.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC------cEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEED------TLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
.|.+.|.++.|+.++++|++|++|..+++|+++.. +.+.... .|. +.|.+++| ......+++|+.+|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~---SNIF~L~F--~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR---SNIFSLEF--DLENRFLYSGERWGT 128 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccc---cceEEEEE--ccCCeeEecCCCcce
Confidence 35688999999999999999999999999998632 3333222 233 78999999 667889999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee-eecCCCCCCeeE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN-PIPSSSDCSISA 1180 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~-~i~~~~~~~Vts 1180 (1344)
|...|+.+ .....+ ..-....+.|.. +.-+|.++.+++.+.+|.|.+||.+....... .+.....+...+
T Consensus 129 VI~HDiEt--~qsi~V---~~~~~~~~~VY~----m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 129 VIKHDIET--KQSIYV---ANENNNRGDVYH----MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred eEeeeccc--ceeeee---ecccCcccceee----cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 99999976 222222 112223346666 77788899999999999999999986541222 222333344566
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCC---CCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ---VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h---~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
+.+.+....+|++.+..|-+.+||+|.....+.......+- ...-.++.|+|. |..+.+--....-.+||+-..+
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~--G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS--GNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC--CCeehhhhccCCCEEeeeeccc
Confidence 65777778899999999999999999876544333222211 223357889999 8888887776777788988754
Q ss_pred cceEEEecC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC------C------------------ceEEEEecc
Q 000700 1258 DAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE------G------------------EQLGTIRYH 1307 (1344)
Q Consensus 1258 ~~v~tl~~h------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~------g------------------~~l~~l~~~ 1307 (1344)
.++..+... ...+.+++|-.+.. +++|+.+-.|++|.+. | +.+..++
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-- 354 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-- 354 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe--
Confidence 555555421 12567788876544 9999999999999852 1 1223344
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1308 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1308 h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+|.+.++.+.|+|+..+|++.+..+.++||+
T Consensus 355 ------GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 ------GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ------cccccccceeecCCcceEeccchhhheeccc
Confidence 4558899999999999999999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-15 Score=172.34 Aligned_cols=294 Identities=13% Similarity=0.216 Sum_probs=200.0
Q ss_pred cCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-ECCCe
Q 000700 1028 TRFEKGTKTALLQPFSP---IVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGN 1101 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~---~Latgs~dg~I~VWd~~tg--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG~ 1101 (1344)
..|..+|+|+.|-|+.+ ++++|+.|+.|.+|.++.. ..+.++++|. +.++++ . +...+.++ ..|++
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~-----~~~~cv--~-a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC-----KECVCV--V-ARSSVMTCKAADGT 122 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc-----eeEEEE--E-eeeeEEEeeccCce
Confidence 45678999999999887 8999999999999998844 3445566655 445555 1 22333333 68999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC-CCeEE-EEECCCeEEEEECCCCc-eeeeeecCCCCCCe
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLY-ASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSI 1178 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~Ll-agg~Dg~I~VWDl~~~~-~~v~~i~~~~~~~V 1178 (1344)
+.+||... .+.-+. ..+.-....+.. ++++..++ +..++ .||.+..|.++.-...+ ..+..+.+|.+. |
T Consensus 123 v~vw~~~~--~e~~~~---~~~rf~~k~~ip--LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DW-I 194 (764)
T KOG1063|consen 123 VSVWDKQQ--DEVFLL---AVLRFEIKEAIP--LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDW-I 194 (764)
T ss_pred EEEeecCC--Cceeee---hheehhhhhHhh--HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchh-h
Confidence 99999843 221122 112211222222 23344443 33333 34567777777655332 267788899887 9
Q ss_pred eEEEEEcCCC--CEEEEEECCCeEEEEECCCCCe--------------------eeEee-------cCCCCCCCCeEEEE
Q 000700 1179 SALTASQVHG--GQLAAGFVDGSVRLYDVRTPDM--------------------LVCST-------RPHTQQVERVVGIS 1229 (1344)
Q Consensus 1179 tsL~~~s~dg--~~L~sGs~DGsVrIwDlr~~~~--------------------~v~~~-------~~~~~h~~~I~sva 1229 (1344)
.++.+-...+ -++++++.|..||+|.+.-... ....+ ....||..+|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9996544443 3788999999999998763320 00000 12348999999999
Q ss_pred EecCCCCCEEEEEECCCcEEEEECCCCc------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEE
Q 000700 1230 FQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1303 (1344)
Q Consensus 1230 ~sp~~~g~~Lasgs~DG~I~IWDlr~~~------~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~ 1303 (1344)
|+|. +..|+++|.|.++.+|...... ..+-...+..+...+.-|+|++..+++-+..|..++|.......-.
T Consensus 275 W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 275 WHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred Eccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcccee
Confidence 9999 8899999999999999877541 1111222335568899999999999999999999999833322222
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.. .+.++|...|.+++|+|.|.+|.+.|.|.+-|+|
T Consensus 353 ~~----~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 353 QE----PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ec----cccccccccceeeeecCCCCEEEEeccccceeee
Confidence 11 1234566999999999999999999999999886
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-14 Score=149.72 Aligned_cols=277 Identities=13% Similarity=0.205 Sum_probs=196.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCC----------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEE
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEE----------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~t----------g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1103 (1344)
|..-+++|.+++|++|+.+|.|-+..+++ ...+..+++|. ++|..++|. ..+|++|++ |.|+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahd---gpiy~~~f~----d~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHD---GPIYYLAFH----DDFLLSGGD-GLVY 84 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccC---CCeeeeeee----hhheeeccC-ceEE
Confidence 44456889999999999999999998753 13455668888 999999992 567777765 9999
Q ss_pred EEeccCCCCceeEEeeeec-ccCC-----CCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC
Q 000700 1104 IWKDYDQKDKQKLVTAFSS-IQGH-----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS 1177 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~-l~~h-----~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~ 1177 (1344)
-|..............|+. .+-| -..|++ +-..|..+.++.++.|+.++-||+++++ ..+++++|++.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINa----m~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDY- 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINA----MWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDY- 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccce----eEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcce-
Confidence 9987542221111111111 1112 234454 5667788888888899999999999999 99999999987
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCC-------CCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ-------QVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~-------h~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
|.++ ........+++|++||++|+||.++.+ .++.+...+. -..+|-+++.+.+ .+++|+ ...+.+
T Consensus 159 vH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGg-Gp~lsl 231 (325)
T KOG0649|consen 159 VHSV-VGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGG-GPKLSL 231 (325)
T ss_pred eeee-eecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEeccCc----eEEecC-CCceeE
Confidence 9999 554556689999999999999999998 5555543321 2357888887644 888775 457999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC-C
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ-V 1329 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg-~ 1329 (1344)
|.++.. ++..++.. .+.+.-+.|.. ..+++++..+.|.-|.+.|..-..+...+ ....+..|+..- +
T Consensus 232 whLrss-e~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s--------~~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 232 WHLRSS-ESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQANIPVES--------TACYSASWQTSPIK 299 (325)
T ss_pred EeccCC-CceEEEec-ccceeEeeeec--ceEEEeccccceeeeeeccEEEEeccCCc--------cceeeecccCCceE
Confidence 999987 77777763 45677788864 46777777789999999987766665512 234455554332 4
Q ss_pred EEEEEECCCeEEEc
Q 000700 1330 LLAAGSADACVSIH 1343 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~IW 1343 (1344)
++-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 55555666666654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=171.15 Aligned_cols=242 Identities=17% Similarity=0.263 Sum_probs=180.2
Q ss_pred CCeEEEEEcCC-------CCEEEEEECCCcEEEEECCCCc---EEEE------------------eeCCCCCCCCeEEEE
Q 000700 1032 KGTKTALLQPF-------SPIVVAADENERIKIWNYEEDT---LLNS------------------FDNHDFPDKGISKLC 1083 (1344)
Q Consensus 1032 ~~I~~l~fspd-------g~~Latgs~dg~I~VWd~~tg~---~l~~------------------~~~h~~~~~~ItsL~ 1083 (1344)
.-+.|+.|... |+++|.|+-+..|.|||+.-.. .... -.+|. ..|.++.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT---davl~Ls 250 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT---DAVLALS 250 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch---HHHHHHH
Confidence 45678888654 5699999999999999976210 0000 12344 5667888
Q ss_pred EEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCC
Q 000700 1084 LVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEK 1162 (1344)
Q Consensus 1084 f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~ 1162 (1344)
| |....+.|++||.|.+|++||+.+ +++.. .+..|...|.+ +.|++... .|++|+.|++|.+.|.+.
T Consensus 251 ~-n~~~~nVLaSgsaD~TV~lWD~~~--g~p~~-----s~~~~~k~Vq~----l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 251 W-NRNFRNVLASGSADKTVKLWDVDT--GKPKS-----SITHHGKKVQT----LEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred h-ccccceeEEecCCCceEEEEEcCC--CCcce-----ehhhcCCceeE----EEecCCCceEEEeccccceEEeeeccC
Confidence 7 345678999999999999999987 55543 36788899988 99998765 566778999999999995
Q ss_pred CceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE
Q 000700 1163 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA 1242 (1344)
Q Consensus 1163 ~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasg 1242 (1344)
....-..++. .+.|-.+.+.+.....++++..||.|+-+|+|.....+...+ .|.+.|.+++++.. ....++++
T Consensus 319 ~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~---AHd~~ISgl~~n~~-~p~~l~t~ 392 (463)
T KOG0270|consen 319 PSNSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK---AHDDEISGLSVNIQ-TPGLLSTA 392 (463)
T ss_pred ccccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE---eccCCcceEEecCC-CCcceeec
Confidence 4312233333 234888867666778899999999999999998865666554 56699999999987 67889999
Q ss_pred ECCCcEEEEECCCCccceEEEecC---CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 000700 1243 SQAGDIQFLDIRNHKDAYLTIDAH---RGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1243 s~DG~I~IWDlr~~~~~v~tl~~h---~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~ 1296 (1344)
+.|+.|++|++... .+. ....| -+...|+++.|+-. ++|.|+..+.++|||+
T Consensus 393 s~d~~Vklw~~~~~-~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 393 STDKVVKLWKFDVD-SPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccceEEEEeecCC-CCc-ccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 99999999999865 221 11112 23467788888765 6788888889999994
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=169.23 Aligned_cols=241 Identities=17% Similarity=0.296 Sum_probs=183.3
Q ss_pred CCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECC
Q 000700 1074 FPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEV 1152 (1344)
Q Consensus 1074 ~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~D 1152 (1344)
+..++|+++.| +|...+|++++.||+++||.+..... ..+ +.+.-...+|.+ .+|.++|. .++++|..
T Consensus 211 ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqvDGk~N--~~l---qS~~l~~fPi~~----a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 211 PSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQVDGKVN--PKL---QSIHLEKFPIQK----AEFAPNGHSVIFTSGRR 279 (514)
T ss_pred cCcCCceEEEe--cCCCceEEEecCCCcEEEEEecCccC--hhh---eeeeeccCccce----eeecCCCceEEEecccc
Confidence 34479999999 78999999999999999999965222 222 223333455655 88999988 78888899
Q ss_pred CeEEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe
Q 000700 1153 SSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1153 g~I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~s 1231 (1344)
...+.||+.+.+ ..+....++....+... ..++++++|+..+..|.|.+.-..+++ .+..++. .+.|..++|+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~F-eVShd~~fia~~G~~G~I~lLhakT~e-li~s~Ki----eG~v~~~~fs 353 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERF-EVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFKI----EGVVSDFTFS 353 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhhee-EecCCCCeEEEcccCceEEeehhhhhh-hhheeee----ccEEeeEEEe
Confidence 999999998876 12223334443335555 567899999999999999999888887 5555533 2789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC-CeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CceEEE
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE-------GEQLGT 1303 (1344)
Q Consensus 1232 p~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~-~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-------g~~l~~ 1303 (1344)
.+ ++.|++.+.+|.|.+||++.. .++..+....+ .-++++.++++.+||+||..|.|.|||.+ .+++..
T Consensus 354 Sd--sk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 354 SD--SKELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred cC--CcEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh
Confidence 88 899999999999999999998 78888774322 34677888999999999999999999943 233333
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEEC--CCeEEE
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA--DACVSI 1342 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~--Dg~I~I 1342 (1344)
+.. - ...|+++.|++++.+||.+|. +..+++
T Consensus 431 ~dN-L-------tt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 431 VDN-L-------TTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred hhh-h-------heeeeeeeeCcchhhhhhhhhccccceEE
Confidence 333 2 368999999999999998876 445553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=193.71 Aligned_cols=248 Identities=18% Similarity=0.295 Sum_probs=193.3
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEECCC---C---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1032 KGTKTALLQPFSPI----VVAADENERIKIWNYEE---D---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~----Latgs~dg~I~VWd~~t---g---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
.+-+.++|.+.+.. ||.|.+||.|.+||... + ..+.+...|. +.|..+.| |...+++|++|++||.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~---G~V~gLDf-N~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT---GPVLGLDF-NPFQGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC---Cceeeeec-cccCCceeeccCCCCc
Confidence 45678889888775 88889999999999764 2 4566778888 99999999 3345569999999999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCC-CCee
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSD-CSIS 1179 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~~~-~~Vt 1179 (1344)
|.|||+...+.....- -......|.+ +.|+..-.+++++ +.+|.+.|||++..+ .+..+..+.. ..+.
T Consensus 141 I~iWDlnn~~tP~~~~-----~~~~~~eI~~----lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG-----SQAPPSEIKC----LSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCS 210 (1049)
T ss_pred EEEeccCCcCCCCCCC-----CCCCcccceE----eccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCcccee
Confidence 9999996522111100 1123345555 9998876666655 678899999999998 7777766554 3366
Q ss_pred EEEEEcCCCCEEEEEECCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000700 1180 ALTASQVHGGQLAAGFVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs~DG---sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
.+.|.+.+...+++++.|. .|.+||+|.....++++ ++|...|.++.|++. +.+++++++.|+.|.+|+..++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---EGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---cccccceeeeccCCC-CchhhhcccCCCCeeEecCCCc
Confidence 7755444455677776653 69999999877666644 578899999999998 5699999999999999999998
Q ss_pred ccceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~g 1298 (1344)
+.+..+......+..+.|.|..+ +|++.+-||.|.||.+.+
T Consensus 287 -Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 -EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred -eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 89999988888999999999887 889999999999999654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=170.96 Aligned_cols=113 Identities=16% Similarity=0.282 Sum_probs=99.4
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc------cceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~------~~v~tl~~h~~~Vtsla~spd-g~~LasgS~Dg~I~Iwd 1295 (1344)
..|+.++|.|- +...|++++.||.|++|.+..++ .+-..+.+|...|+++.|||- ..+|++++.|.+|++||
T Consensus 628 t~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45788999987 78899999999999999997654 566788899999999999995 45899999999999999
Q ss_pred C-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1296 L-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1296 ~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+ +++....+.+ |. +.|.+++|+|+|+.+|+.+.||+|+||+
T Consensus 707 l~~~~~~~~l~g-Ht-------dqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVG-HT-------DQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheecc-Cc-------CceeEEEECCCCcceeeeecCceEEEeC
Confidence 5 5666677777 66 8999999999999999999999999985
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=156.15 Aligned_cols=291 Identities=16% Similarity=0.216 Sum_probs=199.0
Q ss_pred CCeEEEEEcC--CC-CEEEEEE----CCCcEEEEECC--CCcEEEEee-CCCCCCCCeEEEEEEeeCCC---CEEEEEEC
Q 000700 1032 KGTKTALLQP--FS-PIVVAAD----ENERIKIWNYE--EDTLLNSFD-NHDFPDKGISKLCLVNELDV---SLLLVASC 1098 (1344)
Q Consensus 1032 ~~I~~l~fsp--dg-~~Latgs----~dg~I~VWd~~--tg~~l~~~~-~h~~~~~~ItsL~f~ns~d~---~~L~tgs~ 1098 (1344)
-.+.++.|+. +. .+||.|+ ..+.|.|-.++ +++.+..-. .|. -+++.+.|++++.| ++|+|+++
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~pdlLATs~D 121 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYPDLLATSSD 121 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCcchhhcccC
Confidence 4677888873 33 3788887 35667766443 444443322 344 58899999765543 45666543
Q ss_pred CCeEEEEeccCCCCceeEEeee--ecccCCCCCccccceEEEEecCCCe-EEEEECCCeEEEEECCCCce--eeeeecCC
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAF--SSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQ--MVNPIPSS 1173 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~--~~l~~h~~~V~s~~~~v~ws~~~~~-Llagg~Dg~I~VWDl~~~~~--~v~~i~~~ 1173 (1344)
.+|+|++...+...++.... ..-..+..++++ ++|+.-+.. +.+++-|-+..|||++++.. ....+..|
T Consensus 122 --~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS----FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 122 --FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS----FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred --eEEEEeccCcCCceehhhhhccCcccccCCcccc----cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 69999997544443332111 112234455555 899876655 55557899999999998740 13344455
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-CcEEEEE
Q 000700 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLD 1252 (1344)
Q Consensus 1174 ~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D-G~I~IWD 1252 (1344)
+..|..++|....-+.|++.+.||+||+||+|..+.....++.- ....+...++|++. +-+++++-..| ..|.|.|
T Consensus 196 -DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p-~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 196 -DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP-SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILD 272 (364)
T ss_pred -CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC-CCCCcceeeccCcC-CchHHhhhhcCCceEEEEE
Confidence 44599996665556789999999999999999877444444322 22467889999987 67888877665 5699999
Q ss_pred CCCCccceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC-CCE
Q 000700 1253 IRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-QVL 1330 (1344)
Q Consensus 1253 lr~~~~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd-g~~ 1330 (1344)
+|....++..+++|.+.|++++|.|+.. .|++++.|..+.|||+.......... .-......+.|+.+.|++. ...
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d--Pilay~a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED--PILAYTAGGEVNQIQWSSSQPDW 350 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC--chhhhhccceeeeeeecccCCCE
Confidence 9999899999999999999999999855 89999999999999975322211110 0011123478999999964 467
Q ss_pred EEEEEC
Q 000700 1331 LAAGSA 1336 (1344)
Q Consensus 1331 Lasgs~ 1336 (1344)
++.+..
T Consensus 351 iai~~~ 356 (364)
T KOG0290|consen 351 IAICFG 356 (364)
T ss_pred EEEEec
Confidence 887764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=177.58 Aligned_cols=254 Identities=16% Similarity=0.289 Sum_probs=190.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEE--------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t--------g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
|.++|+.+.|++-.+.|++++.||.+.+|+++. -+.+.+|.+|. ++|.|+++ ..++..+++||.||+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v--~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVV--PSNGEHCYSGGIDGT 367 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEe--cCCceEEEeeccCce
Confidence 347899999999999999999999999999932 26788999999 99999999 789999999999999
Q ss_pred EEEEeccCCCC---ceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-C
Q 000700 1102 IRIWKDYDQKD---KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-S 1177 (1344)
Q Consensus 1102 IrIWdl~~~~~---~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~-~ 1177 (1344)
|+.|++..+.. ......-...+.||...++. +++++....|++++.||+++.|+...+. . .++...... .
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~----l~~s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWL----LALSSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGY 441 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceee----eeecccccceeeecCCceEEeeccCCcC-c-cccCCccccCC
Confidence 99996642111 01000111457889999888 8999999999999999999999998887 4 333332221 1
Q ss_pred eeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC--C--CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH--T--QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1253 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~--~--~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDl 1253 (1344)
-+++.+.+......++...-|.--++|..... ....+... . .....+..+.++|. +.+.+++..|+.|+++|.
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRFFDN 518 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcccccCccceEEecCC--CCeeEecccCCceecccc
Confidence 34553333333344444444444444444333 12222111 0 11245778889998 899999999999999999
Q ss_pred CCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1254 RNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1254 r~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
.++ .++.....|...++++++.|+|.+|++|+.|+.+++|.+..
T Consensus 519 ~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 519 KTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccc-ccchheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 998 89999999999999999999999999999999999999643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-13 Score=156.68 Aligned_cols=287 Identities=26% Similarity=0.495 Sum_probs=215.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-EEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEEC-CCeEEE
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT-LLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASC-NGNIRI 1104 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~-~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~-DG~IrI 1104 (1344)
..+...+.++.|.+.+..++.++.++.+.+|+...+. .+..+..... ..+..+.+. .+++. .++..+. |+.+++
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALS-SPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEE-CCCcceEEeccCCCCccEEE
Confidence 3456789999999999999999999999999999886 6777776441 367777775 56776 5555445 999999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-CCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
|+.... .... ..+..|...+.. ++|++++..+++++. ++.+++|+..... .+..+..|... |.++.
T Consensus 139 ~~~~~~---~~~~---~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-v~~~~- 205 (466)
T COG2319 139 WDLSTP---GKLI---RTLEGHSESVTS----LAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDP-VSSLA- 205 (466)
T ss_pred EEecCC---CeEE---EEEecCcccEEE----EEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCc-eEEEE-
Confidence 998540 1111 236778888876 899999988888875 9999999999877 78888876555 99994
Q ss_pred EcCCCC-EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEE
Q 000700 1184 SQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1184 ~s~dg~-~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~t 1262 (1344)
+.+++. .+++++.|+.|++||.+.+. .... ...+|.... ...|+++ +..+++++.|+.+++||.+.....+..
T Consensus 206 ~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 206 FSPDGGLLIASGSSDGTIRLWDLSTGK-LLRS--TLSGHSDSV-VSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred EcCCcceEEEEecCCCcEEEEECCCCc-EEee--ecCCCCcce-eEeECCC--CCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 457887 55555999999999988555 3331 233455554 3389998 788999999999999999977443555
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEEe--ccCCccccccCCCeEEEEEecCCCEEEEE-ECCC
Q 000700 1263 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIR--YHHPSFMAQKIGSVNCLTFHPYQVLLAAG-SADA 1338 (1344)
Q Consensus 1263 l~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~--~~h~~f~~~~~~~V~slafspdg~~Lasg-s~Dg 1338 (1344)
+..|...+.++.|+|++..+++++.|+.+.+|+... ....... . |. ..+..+.|.+++..++.+ ..|+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG-HE-------GPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc-cC-------CceEEEEECCCCCEEEEeecCCC
Confidence 567889999999999888888899999999999653 3333333 3 43 478999994332555555 5788
Q ss_pred eEEEcC
Q 000700 1339 CVSIHS 1344 (1344)
Q Consensus 1339 ~I~IWd 1344 (1344)
.+.+|+
T Consensus 352 ~~~~~~ 357 (466)
T COG2319 352 TIRLWD 357 (466)
T ss_pred cEEeee
Confidence 888885
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=160.13 Aligned_cols=294 Identities=15% Similarity=0.262 Sum_probs=208.7
Q ss_pred ccccCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC---------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE
Q 000700 1025 CWDTRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED---------TLLNSFDNHDFPDKGISKLCLVNELDVSLLL 1094 (1344)
Q Consensus 1025 ~Wd~~~~~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg---------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~ 1094 (1344)
.|. ...++..+.|++.+. .|+||+.|..|+||.++.+ +.+..+..|. ..|+.+.| +++|++|+
T Consensus 9 ~wH--~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~---~aVN~vRf--~p~gelLA 81 (434)
T KOG1009|consen 9 SWH--DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT---RAVNVVRF--SPDGELLA 81 (434)
T ss_pred Eec--CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc---ceeEEEEE--cCCcCeee
Confidence 455 457899999999887 9999999999999977643 2344566788 89999999 78999999
Q ss_pred EEECCCeEEEEeccCC-----CC----ceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCce
Q 000700 1095 VASCNGNIRIWKDYDQ-----KD----KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ 1165 (1344)
Q Consensus 1095 tgs~DG~IrIWdl~~~-----~~----~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~ 1165 (1344)
+|+++|.|.+|..... +. ..+...-++.+.+|...+.. ++|++++..+++++.|..+++||+..++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd----L~Ws~d~~~l~s~s~dns~~l~Dv~~G~- 156 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD----LAWSPDSNFLVSGSVDNSVRLWDVHAGQ- 156 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh----hhccCCCceeeeeeccceEEEEEeccce-
Confidence 9999999999987510 01 01111223567889999998 9999999999999999999999999999
Q ss_pred eeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE----eecCCCC-----------CC----CCeE
Q 000700 1166 MVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC----STRPHTQ-----------QV----ERVV 1226 (1344)
Q Consensus 1166 ~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~----~~~~~~~-----------h~----~~I~ 1226 (1344)
....+..|... |..+ .+++.++++++-+.|...+.+++.......+ .+....+ |. .-..
T Consensus 157 l~~~~~dh~~y-vqgv-awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHY-VQGV-AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccc-ccee-ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 77777777665 8888 7788899999988888777777654331110 0100000 11 1234
Q ss_pred EEEEecCCCCCEEEEEEC----CC-----cEEEEECCCCccceEEEecCCCCeEEEEEcC------------------CC
Q 000700 1227 GISFQPGLDPAKIVSASQ----AG-----DIQFLDIRNHKDAYLTIDAHRGSLSALAVHR------------------HA 1279 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~----DG-----~I~IWDlr~~~~~v~tl~~h~~~Vtsla~sp------------------dg 1279 (1344)
.++|+|+ |.++++.+. .| ..++|+-.....+...+.........+.++| .+
T Consensus 235 RlsfTPd--G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPD--GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCC--CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 6788898 888887642 22 2355655544455555555555555554443 34
Q ss_pred CEEEEEeCCCeEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1280 PIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
.++|.++. ..|.|||... .++..+.. -|-..|+.++|+++|..|+..|.||...+
T Consensus 313 lvfaiAt~-~svyvydtq~~~P~~~v~n-------ihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 313 LVFAIATK-NSVYVYDTQTLEPLAVVDN-------IHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEEeec-ceEEEeccccccceEEEee-------eeeeeecceeecCCCcEEEEeccCCceEE
Confidence 46666665 5799999653 34443332 12378999999999999999999997654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=158.62 Aligned_cols=290 Identities=15% Similarity=0.205 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEcC----CCC-EEEEEECCCcEEEEECCCCc---EEEEeeCCCCCCCCeEEEEEEeeCC--CCEEEEEEC
Q 000700 1029 RFEKGTKTALLQP----FSP-IVVAADENERIKIWNYEEDT---LLNSFDNHDFPDKGISKLCLVNELD--VSLLLVASC 1098 (1344)
Q Consensus 1029 ~~~~~I~~l~fsp----dg~-~Latgs~dg~I~VWd~~tg~---~l~~~~~h~~~~~~ItsL~f~ns~d--~~~L~tgs~ 1098 (1344)
.++.+|..++|++ ++. .+++++ ...+.+|+..... .++.+.... .......++|.-... ..++++||.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d-~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADED-HDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCC-CCcceEEEEEEecCCCCCeeEEeecc
Confidence 3456788999985 233 455555 7789999876433 333333221 125666777743222 468999999
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCC
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSS 1174 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~---~~~ 1174 (1344)
-|.|+|.|... + ++. ..+.+|...|+. +.+.|... ++++++.|..||+||++++. |+..+- +|.
T Consensus 114 ~GvIrVid~~~--~--~~~---~~~~ghG~sINe----ik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHr 181 (385)
T KOG1034|consen 114 LGVIRVIDVVS--G--QCS---KNYRGHGGSINE----IKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHR 181 (385)
T ss_pred eeEEEEEecch--h--hhc---cceeccCccchh----hhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEeccccccc
Confidence 99999999865 2 222 457899999998 78888764 56667899999999999999 998876 455
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe---e--e-------------------EeecCCCCCCCCeEEEEE
Q 000700 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM---L--V-------------------CSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1175 ~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~---~--v-------------------~~~~~~~~h~~~I~sva~ 1230 (1344)
+. |.++ -++.+|.+|++++.|.++++|++...+- + . -.+.+-.-|...|-|+.|
T Consensus 182 de-VLSv-D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 182 DE-VLSV-DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred Cc-EEEE-EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 54 9999 6788999999999999999999983320 0 0 001112246677777777
Q ss_pred ecCCCCCEEEEEECCCcEEEEECCCCcc-------------ceEEEecCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEe
Q 000700 1231 QPGLDPAKIVSASQAGDIQFLDIRNHKD-------------AYLTIDAHRGSLSALA--VHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1231 sp~~~g~~Lasgs~DG~I~IWDlr~~~~-------------~v~tl~~h~~~Vtsla--~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
- |+++++-|-++.|..|.....++ .+.++......|+-+. |.+.+++||.|...|.|.+||
T Consensus 260 ~----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwd 335 (385)
T KOG1034|consen 260 F----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWD 335 (385)
T ss_pred H----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEE
Confidence 4 67999999999999998832212 2233444455566554 567788999999999999999
Q ss_pred CCCceE---EEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1296 LEGEQL---GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1296 ~~g~~l---~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
++.... .++.. + .....|...+|+.||..|+...+|++|--||
T Consensus 336 L~~~ep~~~ttl~~-s-----~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 336 LDNNEPPKCTTLTH-S-----KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCCCCccCceEEe-c-----cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 764332 23322 2 2347899999999999999999999998886
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=157.82 Aligned_cols=247 Identities=15% Similarity=0.165 Sum_probs=182.3
Q ss_pred eEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEE
Q 000700 1079 ISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1158 (1344)
Q Consensus 1079 ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VW 1158 (1344)
-.++.| ++.|.+|++|..||.|.|||+.+. .. -+.+.+|..+|.+ ++|+++|..|++++.|..|.+|
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~--~i-----ar~lsaH~~pi~s----l~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTF--RI-----ARMLSAHVRPITS----LCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEcccc--ch-----hhhhhccccceeE----EEecCCCCEeeeecCCceeEEE
Confidence 678899 789999999999999999999762 21 1458899999998 9999999999999999999999
Q ss_pred ECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCE
Q 000700 1159 DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAK 1238 (1344)
Q Consensus 1159 Dl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~ 1238 (1344)
|+..+. +++.+.. +++|+...+.+.+.+.+++.-.+..-.+.+...+...+-....-..-...-.+..|++. |++
T Consensus 93 Dl~~gs-~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~y 167 (405)
T KOG1273|consen 93 DLLKGS-PLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKY 167 (405)
T ss_pred eccCCC-ceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC--CCE
Confidence 999999 9988887 45688887777777777777666666666666543222111111111112223457887 999
Q ss_pred EEEEECCCcEEEEECCCCccceEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceE----EEEeccCCcccc
Q 000700 1239 IVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL----GTIRYHHPSFMA 1313 (1344)
Q Consensus 1239 Lasgs~DG~I~IWDlr~~~~~v~tl~~h~-~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l----~~l~~~h~~f~~ 1313 (1344)
+++|...|.+.++|..+. +++..++... ..|..+.++..|+.|+..+.|+.|+.|+...-.. ......|.----
T Consensus 168 IitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 999999999999999998 8888888666 7889999999999999999999999999541100 001100110000
Q ss_pred ccCCCeEEEEEecCCCEEEEEEC-CCeEEEcC
Q 000700 1314 QKIGSVNCLTFHPYQVLLAAGSA-DACVSIHS 1344 (1344)
Q Consensus 1314 ~~~~~V~slafspdg~~Lasgs~-Dg~I~IWd 1344 (1344)
-..-.=.+++|+.+|.|+++++. -..++||.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 01123457889999999988876 56789984
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=154.58 Aligned_cols=251 Identities=20% Similarity=0.236 Sum_probs=180.5
Q ss_pred CCCeEEEEEcCCCCE-EEEEEC----C---CcEEEEECCCC---------cEEEEee-CCCCCCCCeEEEEEEeeCCCCE
Q 000700 1031 EKGTKTALLQPFSPI-VVAADE----N---ERIKIWNYEED---------TLLNSFD-NHDFPDKGISKLCLVNELDVSL 1092 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~-Latgs~----d---g~I~VWd~~tg---------~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~ 1092 (1344)
.+.|..++-+|..+. |+++.. . ..+.||.+... +++..+. .+- +.|.++.| .|++..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav---g~i~cvew--~Pns~k 137 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV---GKINCVEW--EPNSDK 137 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh---CceeeEEE--cCCCCe
Confidence 356777777776664 444321 1 24679987643 2333333 233 58999999 788888
Q ss_pred EEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec-CCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000700 1093 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1171 (1344)
Q Consensus 1093 L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~-~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~ 1171 (1344)
+++-. |..|.+|++.........+.. ..-.++....++ -+|+| .++..+++..|+++..||+++.. +...|.
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~s-s~s~e~~~~fts----g~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI~ 210 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLS-SESAEMRHSFTS----GAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSIE 210 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecc-cccccccceecc----cccCCCCccceEEEeCCCcEEEEEccchh-hhcchh
Confidence 88775 778999999774442222211 111123333344 78988 56667777788999999999988 777887
Q ss_pred CCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000700 1172 SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1172 ~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IW 1251 (1344)
..++..|..+.+.+....+|++|+.||.|++||.|..+..++. ..+|..+|.+|.|+|. ..+++++|+.|..|.+|
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e---l~~HsHWvW~VRfn~~-hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE---LPGHSHWVWAVRFNPE-HDQLILSGGSDSAVNLS 286 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc---cCCCceEEEEEEecCc-cceEEEecCCCceeEEE
Confidence 7666679999655545567899999999999999988866664 4577899999999998 78889999999999999
Q ss_pred ECCCCc----------------------------cceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q 000700 1252 DIRNHK----------------------------DAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1252 Dlr~~~----------------------------~~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~ 1297 (1344)
-...-. ..+.++..|...|.+++|+.-.+ +||+-|.||.+.|=.+.
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 754211 13457788999999999998777 57778999999876543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-15 Score=156.14 Aligned_cols=289 Identities=17% Similarity=0.211 Sum_probs=196.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
.+...++++.|..++. |.+|...|.|.+|++++...+..++.+. ...|+.+.-. + ++.|.+-+.|+.+.+|++.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~--p-~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSI--P-NDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhc--cceeeceeec--C-CcchhhcCCCceEEEEEcc
Confidence 4557799999987765 8999999999999999988888888443 1678888874 3 4788999999999999995
Q ss_pred CCCCceeEEeeeecccCCCCCccccceE-EEEecCCC---eEEEE-ECC-CeEEEEECCCCceeeeeecCC---CCCCee
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQQSG---YLYAS-GEV-SSIMLWDLEKEQQMVNPIPSS---SDCSIS 1179 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~-v~ws~~~~---~Llag-g~D-g~I~VWDl~~~~~~v~~i~~~---~~~~Vt 1179 (1344)
. +... ..|.-.+++.+++ ....+.+. .++.. +.. ..+.+-|..... .+...... ....++
T Consensus 86 ~--s~~i--------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 86 Y--SAFI--------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVM 154 (323)
T ss_pred C--cceE--------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCcee
Confidence 5 2211 1222233332221 01111111 12221 110 012223332222 22222111 112366
Q ss_pred EEEEEcCCCC--EEEEEECCCeEEEEECCCCCeeeEe------ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000700 1180 ALTASQVHGG--QLAAGFVDGSVRLYDVRTPDMLVCS------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1180 sL~~~s~dg~--~L~sGs~DGsVrIwDlr~~~~~v~~------~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IW 1251 (1344)
+..+...++. ++++|.++|.|.+||+.++...+.. ......|..+|.++.+.+. -..=++|+.+..+..|
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLVMY 232 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccceee
Confidence 6643223333 5778999999999999987432221 1133468899999999876 5555678888889999
Q ss_pred ECCCCc---cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1252 DIRNHK---DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1252 Dlr~~~---~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
.+.... ..-.++...+-.|..+.+-||++++||++.|+.|+||+ .+...+..+++ |. +.|++++|+|+
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-Hs-------agvn~vAfspd 304 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-HS-------AGVNAVAFSPD 304 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-hh-------cceeEEEeCCC
Confidence 887431 11123333355789999999999999999999999999 67899999999 76 89999999999
Q ss_pred CCEEEEEECCCeEEEcC
Q 000700 1328 QVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1328 g~~Lasgs~Dg~I~IWd 1344 (1344)
..++|+++.|++|.+|+
T Consensus 305 ~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 305 CELMAAASKDARISLWK 321 (323)
T ss_pred CchhhhccCCceEEeee
Confidence 99999999999999996
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=151.57 Aligned_cols=275 Identities=21% Similarity=0.312 Sum_probs=185.7
Q ss_pred CCCcEEEEECCCC--cEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-------CeEEEEeccCCCCc-----ee
Q 000700 1051 ENERIKIWNYEED--TLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-------GNIRIWKDYDQKDK-----QK 1115 (1344)
Q Consensus 1051 ~dg~I~VWd~~tg--~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-------G~IrIWdl~~~~~~-----~~ 1115 (1344)
.|+.|.+.+++.+ +.. +.|..+. +.|..++-+| .+..+|+|+..+ -.+-||.+....+. .+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~a---gEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHA---GEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCC---cceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 4677777766543 222 2244444 7788888742 356667766542 23679999764433 12
Q ss_pred EEeeeeccc-CCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC----CeeEEEEEc-CCCC
Q 000700 1116 LVTAFSSIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC----SISALTASQ-VHGG 1189 (1344)
Q Consensus 1116 lvs~~~~l~-~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~----~VtsL~~~s-~dg~ 1189 (1344)
.+ ..+. .+.+.+.+ +.|.|++..+++-. |..|.+|++......+..+...... ..++-.|.+ .+|+
T Consensus 114 ~v---~~Ldteavg~i~c----vew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 114 CV---ASLDTEAVGKINC----VEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred Hh---hcCCHHHhCceee----EEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 22 1122 34445666 99999888887765 7789999998877224444322111 134442333 3566
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
.+++ ..|+++..||+|+.++..+ ....|...|..+.|+|+ ...+|++|+.||.|+|||.|+.+.++.++.+|...
T Consensus 186 qv~t-t~d~tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 186 QVAT-TSDSTLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred eEEE-eCCCcEEEEEccchhhhcc---hhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 6655 4689999999998774433 33467789999999999 67789999999999999999988999999999999
Q ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEeC---CCceEEE-------Eec-----c----CCc---cccccCCCeEEEEEec
Q 000700 1270 LSALAVHRH-APIIASGSAKQLIKVFSL---EGEQLGT-------IRY-----H----HPS---FMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1270 Vtsla~spd-g~~LasgS~Dg~I~Iwd~---~g~~l~~-------l~~-----~----h~~---f~~~~~~~V~slafsp 1326 (1344)
|+++.|+|. .+++.+|+.|..|.+|.. ..+.--. ... . .++ -...|...|.+++|+.
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeecc
Confidence 999999994 668899999999999973 2111000 000 0 000 0124668999999988
Q ss_pred CCCE-EEEEECCCeEEE
Q 000700 1327 YQVL-LAAGSADACVSI 1342 (1344)
Q Consensus 1327 dg~~-Lasgs~Dg~I~I 1342 (1344)
-..+ +|+-+.||+|.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 7765 666778999876
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-14 Score=170.57 Aligned_cols=272 Identities=16% Similarity=0.193 Sum_probs=194.2
Q ss_pred CcEEEEECCCC-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCcc
Q 000700 1053 ERIKIWNYEED-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR 1131 (1344)
Q Consensus 1053 g~I~VWd~~tg-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~ 1131 (1344)
+.+.||+++.. ..-..+... ..|++++|++ .+..+++.|..+|.|.+||+...........+ .....|...+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEEEecC----CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeE
Confidence 47999999865 333334333 5899999953 57788999999999999999774332111100 11234555555
Q ss_pred ccceEEEEecCCCe--EEEEECCCeEEEEECCCCceeeeee----cC------CCCCCeeEEEEEcCCCCEEEEEECCCe
Q 000700 1132 CSNVVVDWQQQSGY--LYASGEVSSIMLWDLEKEQQMVNPI----PS------SSDCSISALTASQVHGGQLAAGFVDGS 1199 (1344)
Q Consensus 1132 s~~~~v~ws~~~~~--Llagg~Dg~I~VWDl~~~~~~v~~i----~~------~~~~~VtsL~~~s~dg~~L~sGs~DGs 1199 (1344)
. +.|.++... +++++.||.|..|+++.-..++... .. .....++++.+...+.+.|+.|+.+|.
T Consensus 296 ~----vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 296 A----VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred E----EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 5 888776555 9999999999999887543111111 11 122358899888888899999999999
Q ss_pred EEEEECCCCCeee----EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEE
Q 000700 1200 VRLYDVRTPDMLV----CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1275 (1344)
Q Consensus 1200 VrIwDlr~~~~~v----~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~ 1275 (1344)
|..-+....+... .....+..|.+.|+++.++|- +..++..+.|.+|+||.......++..+..+...|++++|
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 9875544332222 222245568899999999998 5444444449999999988333788888888888999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCC---ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1276 HRHAP-IIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1276 spdg~-~LasgS~Dg~I~Iwd~~g---~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
||..+ +|+++..||.|.|||+.. +++.+.+. + ....+.+.|++.|+.|++|+..|++.+|+
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~-~-------~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV-C-------SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCCcccccc-c-------ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 99876 788899999999999542 34444443 2 25677888999999999999999999985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=158.18 Aligned_cols=246 Identities=15% Similarity=0.244 Sum_probs=181.1
Q ss_pred CCCeEEEEEcCC----CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEe
Q 000700 1031 EKGTKTALLQPF----SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1031 ~~~I~~l~fspd----g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWd 1106 (1344)
...-..++|+-+ .++||+|+.-|.|+|.|+.+++....+.+|. ..|+.+.+.+ .+.++++++|.|..||+|+
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG---~sINeik~~p-~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG---GSINEIKFHP-DRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC---ccchhhhcCC-CCCcEEEEecCCceEEEEe
Confidence 344555666443 4589999999999999999999999999999 9999999953 4567999999999999999
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeee---------------ec
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNP---------------IP 1171 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~---------------i~ 1171 (1344)
+.+ . ..+.-+..+.+|...|-+ ++|+.++.+++++|.|.+|++|++...+ .... ++
T Consensus 165 I~~--~--~Cv~VfGG~egHrdeVLS----vD~~~~gd~i~ScGmDhslk~W~l~~~~-f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 165 IQT--D--VCVAVFGGVEGHRDEVLS----VDFSLDGDRIASCGMDHSLKLWRLNVKE-FKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred ccC--C--eEEEEecccccccCcEEE----EEEcCCCCeeeccCCcceEEEEecChhH-HhhhhhhhcccCCCCccCcCC
Confidence 966 3 344446778899999888 9999999999999999999999998433 1000 11
Q ss_pred -------------CCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECC-CCCe---------eeEeecCCCCCCC--CeE
Q 000700 1172 -------------SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR-TPDM---------LVCSTRPHTQQVE--RVV 1226 (1344)
Q Consensus 1172 -------------~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr-~~~~---------~v~~~~~~~~h~~--~I~ 1226 (1344)
.|.. .|.|+.|+ |+++++-+.++.|..|..- -.+. ....+..+.-... +-.
T Consensus 236 t~~~~fp~fst~diHrn-yVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRN-YVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred ccccccccccccccccc-hHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEE
Confidence 1111 24444333 6899999999999999872 1111 1111111111122 334
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEECCCCccc-eEEEec--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1227 GISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA-YLTIDA--HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1227 sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~-v~tl~~--h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
..+|.|. ++.||.|.+.|.|.+||++....+ ..++.. ....|...+|+.+|.+|+....|++|.-||
T Consensus 312 rf~~d~~--~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 312 RFAFDPW--QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EEeecHH--HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4566777 899999999999999999987432 222322 245799999999999999999999999998
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-12 Score=150.70 Aligned_cols=277 Identities=25% Similarity=0.503 Sum_probs=206.8
Q ss_pred CCeEEEEE-cCCCC-EEEEEEC-CCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CCeEEEEe
Q 000700 1032 KGTKTALL-QPFSP-IVVAADE-NERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWK 1106 (1344)
Q Consensus 1032 ~~I~~l~f-spdg~-~Latgs~-dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWd 1106 (1344)
..+..+.+ ++++. .++..+. ++.+.+|+... ......+..|. ..|..+.| ++++..+++++. |+.+++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS---ESVTSLAF--SPDGKLLASGSSLDGTIKLWD 184 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc---ccEEEEEE--CCCCCEEEecCCCCCceEEEE
Confidence 35666666 78887 5555444 99999999998 78888899998 89999999 678888888885 99999999
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeee-eecCCCCCCeeEEEEE
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVN-PIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~-~i~~~~~~~VtsL~~~ 1184 (1344)
... +... ..+.+|...+.+ ++|++++..++++ +.|+.|++||...+. ... .+..|... + +..+
T Consensus 185 ~~~--~~~~-----~~~~~~~~~v~~----~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~-~--~~~~ 249 (466)
T COG2319 185 LRT--GKPL-----STLAGHTDPVSS----LAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDS-V--VSSF 249 (466)
T ss_pred cCC--CceE-----EeeccCCCceEE----EEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcc-e--eEeE
Confidence 965 2222 235568888887 8999888745555 899999999998777 666 57776664 2 2256
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
.+++..+++++.|+.+++||.+......... .+|...|.++.|.|+ +..+++++.|+.+++||.... .......
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-~~~~~~~ 323 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPD--GKLLASGSSDGTVRLWDLETG-KLLSSLT 323 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCC--CCEEEEeeCCCcEEEEEcCCC-ceEEEee
Confidence 7788889999999999999999776423332 466799999999997 778888999999999999877 4444444
Q ss_pred --cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCce-EEEEeccCCccccccCCCeEEEEEecCCCEEEE-EECCCe
Q 000700 1265 --AHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA-GSADAC 1339 (1344)
Q Consensus 1265 --~h~~~Vtsla~spdg~~Lasg-S~Dg~I~Iwd~~g~~-l~~l~~~h~~f~~~~~~~V~slafspdg~~Las-gs~Dg~ 1339 (1344)
.|...+..+.+.+++..++.+ ..|+.+.+|+..... ...... . ..+..+.+.+ ...... +..++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~ 393 (466)
T COG2319 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-H--------SNVLSVSFSP-DGRVVSSGSTDGT 393 (466)
T ss_pred ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC-C--------ceEEEEEECC-CCCEEEEecCCCc
Confidence 787789999994332455555 688999999965444 222221 1 2288999988 544444 677899
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
+.+|+
T Consensus 394 ~~~~~ 398 (466)
T COG2319 394 VRLWD 398 (466)
T ss_pred eEEEe
Confidence 99995
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=154.94 Aligned_cols=236 Identities=13% Similarity=0.217 Sum_probs=177.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCC--CCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEe
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNH--DFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT 1118 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h--~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs 1118 (1344)
|+..++++.+.+.-|++||.-+|+....+.+- ...-....+++| ++||..|++| .+..|+|||+..........+
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F--s~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF--SPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe--cCCCCeEeec-ccceEEEeeccCCCCCCcchh
Confidence 66779999999999999999999988887653 322235568999 7899999987 456899999955333333221
Q ss_pred eeec-ccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC
Q 000700 1119 AFSS-IQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1196 (1344)
Q Consensus 1119 ~~~~-l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~ 1196 (1344)
.+.. -.+..+.+. +++|+|... .+++++....+-||.-.... ++..+-+|.+. |+.+ .+.++|+.|.+|..
T Consensus 198 t~~~~k~gq~giis----c~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gG-vThL-~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 198 TVTKGKFGQKGIIS----CFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGG-VTHL-QWCEDGNKLFSGAR 270 (406)
T ss_pred hhhcccccccceee----eeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCC-eeeE-EeccCcCeeccccc
Confidence 1111 112222233 488998766 67777888888888887777 88888888776 9999 66788999988876
Q ss_pred -CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEE
Q 000700 1197 -DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1275 (1344)
Q Consensus 1197 -DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~ 1275 (1344)
|-.|..||+|....++..+..+.+.+..-.-....|. +++|++|+.||.|++||+.+.+..+..+..|+..++.+++
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 7789999999877666555444432222223455676 9999999999999999999966788888899999999999
Q ss_pred cCCCCEEEEEeCC
Q 000700 1276 HRHAPIIASGSAK 1288 (1344)
Q Consensus 1276 spdg~~LasgS~D 1288 (1344)
+|.-+++|+++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998899988754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-15 Score=175.40 Aligned_cols=272 Identities=17% Similarity=0.271 Sum_probs=208.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
|-..|.|+.|...|.++++|++|..|+||..+++.++....+|. +.|++++. +.+..++++++.|..|++|.+..
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc---cccchhcc--chhhhhhhhcccCceEEEEecCC
Confidence 44679999999999999999999999999999999999999999 99999999 67788999999999999999966
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee---eecCCCCCCeeEEEEEcC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN---PIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~---~i~~~~~~~VtsL~~~s~ 1186 (1344)
+... ..+.+|++.|++ ++|+|.. ++++||++++||.+-.. .+. ......+..+.++ .+-.
T Consensus 264 --~~pv-----svLrghtgavta----iafsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~~~~~s~-~~~~ 326 (1113)
T KOG0644|consen 264 --GAPV-----SVLRGHTGAVTA----IAFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEKDLVDSI-LFEN 326 (1113)
T ss_pred --CchH-----HHHhccccceee----eccCccc----cCCCCCceEeccccccc-cccCCCCCCcccccceeee-eccc
Confidence 3332 448999999998 8888765 67899999999998222 111 1122233335555 5556
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h 1266 (1344)
.+.-+.+|+.|+.-+.|...... .|...+.-+..+.+ ...+.+++-.+-.+++|++.++ .......+|
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd-~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~gh 394 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSD-LSSIVVTARNDHRLCVWNLYTG-QLLHNLMGH 394 (1113)
T ss_pred cccccccccCCcccccchhhHhh----------hhccceEEEecccc-ccccceeeeeeeEeeeeecccc-hhhhhhccc
Confidence 78889999999998888664322 11112222222222 2356777778889999999998 788889999
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1267 RGSLSALAVHRHAPI-IASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1267 ~~~Vtsla~spdg~~-LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
...+..+.+||-... ..+++.||...||| ..|.++......| +.+..-+|+++|..++....-|.+.|.
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh--------~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH--------GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc--------ceeeccccCCCCceEecCCCCCceEEe
Confidence 999999999997764 45779999999999 4676666544313 578888999999888887777777764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=162.88 Aligned_cols=294 Identities=16% Similarity=0.252 Sum_probs=214.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|.+.|..+.|+..|..|++|++|..|.+|||.+++....|. +|. ..|..-.|++..+...+++++.||.|++=.+
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~---~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC---NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc---cchhhhhccCCCCCcCceeccccCceeeeee
Confidence 467889999999999999999999999999999988777765 566 6787888988888889999999999999777
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeec---CCCC--CCeeEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIP---SSSD--CSISAL 1181 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~---~~~~--~~VtsL 1181 (1344)
... +..+-. +.+..|.+.|.. ++.-|+.. .++++|.|+.+.-+|++.+. ....+. .+.. -...++
T Consensus 217 ~~t-~~~e~t---~rl~~h~g~vhk----lav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 217 LET-GYVENT---KRLAPHEGPVHK----LAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred ccc-cceecc---eecccccCccce----eeecCCCCCcccccccccceeeeeeccCC-ccceeeeeccCCccceeeeeE
Confidence 542 222212 345667777777 55556554 57778999999999998776 333222 2222 135667
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCee-----eEeecCC---CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000700 1182 TASQVHGGQLAAGFVDGSVRLYDVRTPDML-----VCSTRPH---TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1253 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~-----v~~~~~~---~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDl 1253 (1344)
+..+.+.+.+++|+.|..+++||.|.-... +..+-.+ ......|++++++.+ +..+.++-.|-.|+++.-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~--~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD--GSELLASYNDEDIYLFNK 365 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC--ccceeeeecccceEEecc
Confidence 555556679999999999999999854311 1111110 122357999999987 666777777888999954
Q ss_pred CCCc-----------cceEE-EecCCC--CeEEEEE-cCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCC
Q 000700 1254 RNHK-----------DAYLT-IDAHRG--SLSALAV-HRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIG 1317 (1344)
Q Consensus 1254 r~~~-----------~~v~t-l~~h~~--~Vtsla~-spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~ 1317 (1344)
..+. ..+.. +++|.. .|.++-| -|...++++||.-|.|.||+. +++.+.-+++ . ..
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg-D-------r~ 437 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG-D-------RH 437 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc-c-------cc
Confidence 4321 12223 778854 4666665 577889999999999999995 4555555554 2 25
Q ss_pred CeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1318 SVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1318 ~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.|+||.=||.-.+||++|-|..|+||.
T Consensus 438 VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 438 VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred eEeccCCCCCCchhhccCCccceeeec
Confidence 899999999999999999999999994
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=157.93 Aligned_cols=243 Identities=19% Similarity=0.281 Sum_probs=179.0
Q ss_pred EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCe
Q 000700 1066 LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1145 (1344)
Q Consensus 1066 l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~ 1145 (1344)
-..+.+|. +.|.+|.. ++.|.+|++|+.||+||||.+.+ +.+... .. ....|.+ ++|+|.+..
T Consensus 393 ~lvyrGHt---g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~T--gRcvr~-----~~-~d~~I~~----vaw~P~~~~ 455 (733)
T KOG0650|consen 393 ALVYRGHT---GLVRSISV--DPSGEWLASGSDDGTVRIWEIAT--GRCVRT-----VQ-FDSEIRS----VAWNPLSDL 455 (733)
T ss_pred eeeEeccC---CeEEEEEe--cCCcceeeecCCCCcEEEEEeec--ceEEEE-----Ee-ecceeEE----EEecCCCCc
Confidence 34577888 89999998 78999999999999999999977 433222 11 2335565 899887553
Q ss_pred -EEEEECCCeEEEEECCCCc------------------------------------eeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1146 -LYASGEVSSIMLWDLEKEQ------------------------------------QMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1146 -Llagg~Dg~I~VWDl~~~~------------------------------------~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
++++...+.+.|-+..-+. .-++....| ...|..| .|+..|
T Consensus 456 ~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~v-tWHrkG 533 (733)
T KOG0650|consen 456 CVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQV-TWHRKG 533 (733)
T ss_pred eeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCcccee-eeecCC
Confidence 2222222224443322110 001111122 3348888 566799
Q ss_pred CEEEEEECC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec
Q 000700 1189 GQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1189 ~~L~sGs~D---GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
++|++...+ ..|.|.++..... .. .+....+.|.++.|+|. ..+|++++. ..|+|||+... ..++.+..
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~s-Q~---PF~kskG~vq~v~FHPs--~p~lfVaTq-~~vRiYdL~kq-elvKkL~t 605 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKS-QS---PFRKSKGLVQRVKFHPS--KPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT 605 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccc-cC---chhhcCCceeEEEecCC--CceEEEEec-cceEEEehhHH-HHHHHHhc
Confidence 999987765 4688998876652 22 33334478999999999 888888775 58999999986 77777777
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~--~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
....|.++++||.|.-|+.|+.|+.+..||+ ..+...+++. |. ..|++++||+.-.++++|+.||++.||
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~-H~-------~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL-HE-------KAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh-hh-------hhhhhhhhccccceeeeecCCCcEEEE
Confidence 7788999999999999999999999999994 5668888887 76 899999999999999999999999886
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=163.03 Aligned_cols=272 Identities=14% Similarity=0.165 Sum_probs=187.4
Q ss_pred EECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEE
Q 000700 1058 WNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVV 1137 (1344)
Q Consensus 1058 Wd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v 1137 (1344)
|+.+ |..+..+..|. ..+..++.. ++++.++++||.||+|++|+.....+......+-.++.-....+.. +
T Consensus 1034 W~p~-G~lVAhL~Ehs---~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~----v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHS---SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEK----V 1104 (1431)
T ss_pred CCcc-ceEeehhhhcc---ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEE----E
Confidence 7665 88888898888 777788874 5677999999999999999997644442222222223323344444 5
Q ss_pred EEecCCCeEEEEECCCeEEEEECCCCc------eeeeeecCCCCCCeeEEEEEcC-CCC-EEEEEECCCeEEEEECCCCC
Q 000700 1138 DWQQQSGYLYASGEVSSIMLWDLEKEQ------QMVNPIPSSSDCSISALTASQV-HGG-QLAAGFVDGSVRLYDVRTPD 1209 (1344)
Q Consensus 1138 ~ws~~~~~Llagg~Dg~I~VWDl~~~~------~~v~~i~~~~~~~VtsL~~~s~-dg~-~L~sGs~DGsVrIwDlr~~~ 1209 (1344)
...+.+..+++++.||.|++.+++... .+......+..+.+.++..+.. .+. .++.+...+.|..||+|+..
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 666788999999999999999988621 0222333444555777754432 233 78889999999999999876
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe-cCCCCeEEEEEcCCCC---E-EEE
Q 000700 1210 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAP---I-IAS 1284 (1344)
Q Consensus 1210 ~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~h~~~Vtsla~spdg~---~-Las 1284 (1344)
...... +....+.|++++.+|. +.++++|+..|.+.+||+|-+ .++..+. ++..+++.+..+|-.+ . +.+
T Consensus 1185 ~~w~lk--~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1185 DAWRLK--NQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hHHhhh--cCccccceeEEEecCC--ceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 333221 2223478999999999 999999999999999999987 7887776 3457888888887433 4 444
Q ss_pred Ee-CCCeEEEEeC-CCceEEEEeccCCc---c---cc------ccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1285 GS-AKQLIKVFSL-EGEQLGTIRYHHPS---F---MA------QKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1285 gS-~Dg~I~Iwd~-~g~~l~~l~~~h~~---f---~~------~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+ ..+.|.+|++ +|..-..+.. .++ + .. ++.-......+...+..+.+|+.|+.|+.||
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~-s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWA-SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEc-CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 44 5788999995 4544444443 211 0 00 1112233344555668899999999999997
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=160.86 Aligned_cols=275 Identities=16% Similarity=0.239 Sum_probs=210.7
Q ss_pred cccCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1026 WDTRF-EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1026 Wd~~~-~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
++... ..++..+.++.+|.+|+.|+..|.|-.+||.++++...+.... .|.++.|+ .+.++++++ ....+.|
T Consensus 123 f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E----tv~Dv~~L--Hneq~~AVA-QK~y~yv 195 (545)
T KOG1272|consen 123 FDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME----TVRDVTFL--HNEQFFAVA-QKKYVYV 195 (545)
T ss_pred ccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh----hhhhhhhh--cchHHHHhh-hhceEEE
Confidence 44444 4689999999999999999999999999999999998887765 89999995 466777776 5568999
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
||... .++ ..+..|. .|.. +.|-|..-.|++++..|.++.-|+.+++ .+..+....+. +..| ..
T Consensus 196 YD~~G----tEl----HClk~~~-~v~r----LeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~-~~vm-~q 259 (545)
T KOG1272|consen 196 YDNNG----TEL----HCLKRHI-RVAR----LEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGR-TDVM-KQ 259 (545)
T ss_pred ecCCC----cEE----eehhhcC-chhh----hcccchhheeeecccCCceEEEeechhh-hhHHHHccCCc-cchh-hc
Confidence 99743 222 2234332 3444 7787777777777899999999999999 99999887665 6666 67
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
+|-+..+-.|..+|+|.+|.....+.+++.+ .|.++|.+|++.++ |++++|.+.|..++|||+|+. ..+.++.
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiL----cH~g~V~siAv~~~--G~YMaTtG~Dr~~kIWDlR~~-~ql~t~~ 332 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL----CHRGPVSSIAVDRG--GRYMATTGLDRKVKIWDLRNF-YQLHTYR 332 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHH----hcCCCcceEEECCC--CcEEeecccccceeEeeeccc-cccceee
Confidence 7888899999999999999999888776654 56799999999999 999999999999999999988 4555554
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--CCCce--EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1265 AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1265 ~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~~g~~--l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
. ..+...+++|..| +||.| ....|.||. ..+.. -...-. |. -.+.|.++.|.|....|..|...|.
T Consensus 333 t-p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~-----~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 T-PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HR-----CGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred c-CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hc-----cCcccccceeccHHHeeeccccCCc
Confidence 3 4467788888655 44443 345799997 34321 111111 22 3368999999999888888766554
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=160.68 Aligned_cols=253 Identities=21% Similarity=0.341 Sum_probs=182.7
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC-CCceeEEeeeecccCCCCCccccceEEEEecCCCeE
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYL 1146 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~L 1146 (1344)
++..|. ..|+.+.| .+....|++++.||++++|++... ......+....++.+|.++|-| ++....+.++
T Consensus 289 tl~s~~---d~ir~l~~--~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~----v~v~~n~~~~ 359 (577)
T KOG0642|consen 289 TLRSHD---DCIRALAF--HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLC----VVVPSNGEHC 359 (577)
T ss_pred eeecch---hhhhhhhc--CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEE----EEecCCceEE
Confidence 455566 78999999 678889999999999999999321 1122233344678999999988 8888999999
Q ss_pred EEEECCCeEEEEECCCCc---------eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC
Q 000700 1147 YASGEVSSIMLWDLEKEQ---------QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1217 (1344)
Q Consensus 1147 lagg~Dg~I~VWDl~~~~---------~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~ 1217 (1344)
++||-||+|+.|++.... .....+.+|.+. |+.+ +++.....|++++.||+|+.|+...... +++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l-~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLL-ALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccc-eeee-eecccccceeeecCCceEEeeccCCcCc--cccCC
Confidence 999999999999654211 123456677776 9999 7777888899999999999999877663 33322
Q ss_pred CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC-------CCCeEEEEEcCCCCEEEEEeCCCe
Q 000700 1218 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-------RGSLSALAVHRHAPIIASGSAKQL 1290 (1344)
Q Consensus 1218 ~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h-------~~~Vtsla~spdg~~LasgS~Dg~ 1290 (1344)
...| +.-.++++-.. .-.+.++...-+.--++|+... ..+..+... ...+..+.+||.+.+..++..|+.
T Consensus 436 ~~e~-g~Plsvd~~ss-~~a~~~~s~~~~~~~~~~~ev~-s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKEH-GYPLSVDRTSS-RPAHSLASFRFGYTSIDDMEVV-SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cccc-CCcceEeeccc-hhHhhhhhcccccccchhhhhh-hheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 2222 33445555433 1122333323333334444433 233333311 235778899999999999999999
Q ss_pred EEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1291 IKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1291 I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+++| .+|+.+..... |. ..++++++.|+|.+|++++.||.|++|+
T Consensus 513 Ir~~dn~~~~~l~s~~a-~~-------~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVA-HK-------DSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred eecccccccccchheee-cc-------ceecceeecCCCceEEeecCCceeehhh
Confidence 99999 77888888877 65 7899999999999999999999999995
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-13 Score=148.19 Aligned_cols=216 Identities=15% Similarity=0.268 Sum_probs=162.2
Q ss_pred EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-e
Q 000700 1067 NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-Y 1145 (1344)
Q Consensus 1067 ~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~ 1145 (1344)
..+.+|. +.|.++.|.+ .+...|++||.|.+|.||++....-...+......+.+|...|.. +.|+|... .
T Consensus 75 P~v~GHt---~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~----V~wHPtA~NV 146 (472)
T KOG0303|consen 75 PLVCGHT---APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL----VQWHPTAPNV 146 (472)
T ss_pred CCccCcc---ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE----Eeecccchhh
Confidence 3467888 8999999964 577899999999999999997643333444444668899988877 99999755 5
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000700 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1225 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I 1225 (1344)
|+++|.|.+|.+||+.++. .+.++. |.+- |+++ .++.+|.+|++++.|..|||||.|+++ .+..-..|.|+ .-
T Consensus 147 Llsag~Dn~v~iWnv~tge-ali~l~-hpd~-i~S~-sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~--k~ 219 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGE-ALITLD-HPDM-VYSM-SFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGA--KP 219 (472)
T ss_pred HhhccCCceEEEEeccCCc-eeeecC-CCCe-EEEE-EeccCCceeeeecccceeEEEcCCCCc-EeeecccccCC--Cc
Confidence 6677899999999999999 677776 5554 9999 778899999999999999999999998 55544455443 33
Q ss_pred EEEEEecCCCCCEEEEEE---CCCcEEEEECCCCccceE--EEecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCc
Q 000700 1226 VGISFQPGLDPAKIVSAS---QAGDIQFLDIRNHKDAYL--TIDAHRGSLSALAVHRHAPII-ASGSAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs---~DG~I~IWDlr~~~~~v~--tl~~h~~~Vtsla~spdg~~L-asgS~Dg~I~Iwd~~g~ 1299 (1344)
..+.|-.+ |..+.+|- .+..+.+||..+..+++. ++.. ...|.---+.++..++ ++|-.|+.|+-|.++.+
T Consensus 220 ~Raifl~~--g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 220 ARAIFLAS--GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceeEEecc--CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 45556666 77555553 467899999987755543 3333 3345545577777755 56677999999997765
Q ss_pred e
Q 000700 1300 Q 1300 (1344)
Q Consensus 1300 ~ 1300 (1344)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 5
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=143.92 Aligned_cols=270 Identities=14% Similarity=0.215 Sum_probs=173.8
Q ss_pred EEEECCCcEEEEECCC-Cc--EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE-CCCeEEEEeccCCCCceeEEeeeec
Q 000700 1047 VAADENERIKIWNYEE-DT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1047 atgs~dg~I~VWd~~t-g~--~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~ 1122 (1344)
++...++.|.+|++.+ ++ .+..+... +....+.+ ++++++|++++ .++.|.+|++.. .+....+..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~--spd~~~lyv~~~~~~~i~~~~~~~-~g~l~~~~~--- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVI--SPDKRHLYVGVRPEFRVLSYRIAD-DGALTFAAE--- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC----CCCccEEE--CCCCCEEEEEECCCCcEEEEEECC-CCceEEeee---
Confidence 3446689999999964 43 44555432 35667888 78999987765 578899999862 344333321
Q ss_pred ccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCc---eeeeeecCCCCCCeeEEEEEcCCCCEEE-EEECC
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLA-AGFVD 1197 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~---~~v~~i~~~~~~~VtsL~~~s~dg~~L~-sGs~D 1197 (1344)
.. ...... .+.++++++.+++++ .++.|.+||+.+.. ..+..+... . ...++ .+++++++++ +...+
T Consensus 76 ~~-~~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~-~~~~~-~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 76 SP-LPGSPT----HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-E-GCHSA-NIDPDNRTLWVPCLKE 147 (330)
T ss_pred ec-CCCCce----EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-C-cccEe-EeCCCCCEEEEeeCCC
Confidence 11 111222 388999999999986 58899999997432 022222221 1 24555 4678888775 55567
Q ss_pred CeEEEEECCCCCeeeE----eecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEECCCCc---cceEEEecCC--
Q 000700 1198 GSVRLYDVRTPDMLVC----STRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHK---DAYLTIDAHR-- 1267 (1344)
Q Consensus 1198 GsVrIwDlr~~~~~v~----~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG~I~IWDlr~~~---~~v~tl~~h~-- 1267 (1344)
+.|.+||+.+...+.. ..... .......+.|+|+ |+++++++. ++.|.+||+.... +.+.++..+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~--~g~~p~~~~~~pd--g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTV--EGAGPRHMVFHPN--QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecC--CCCCCceEEECCC--CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 9999999986432211 01111 1244678999999 999888776 8999999997421 2233333221
Q ss_pred ----CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC--CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCe
Q 000700 1268 ----GSLSALAVHRHAPIIASGS-AKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1339 (1344)
Q Consensus 1268 ----~~Vtsla~spdg~~LasgS-~Dg~I~Iwd~~--g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~-Dg~ 1339 (1344)
.....+.++|++++++++. .++.|.+|+++ +..+. +.. +.. .......++|+|+|++|++++. +++
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~-~~~----~~~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS-FEG-HQP----TETQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE-EeE-EEe----ccccCCceEECCCCCEEEEEEccCCc
Confidence 1234688999999888875 47899999963 33222 222 210 0124567899999999998876 899
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
|.+|+
T Consensus 298 v~v~~ 302 (330)
T PRK11028 298 ISVYE 302 (330)
T ss_pred EEEEE
Confidence 99983
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-12 Score=139.62 Aligned_cols=235 Identities=24% Similarity=0.304 Sum_probs=169.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC--CCe
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSS 1154 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~--Dg~ 1154 (1344)
..+..+.| .++...|.+|+.|| .++|+...... . +....+ ...|. -+-|+ ...++..+. -+.
T Consensus 6 ~ti~~~~~--Nqd~~~lsvGs~~G-yk~~~~~~~~k---~---~~~~~~-~~~Iv----EmLFS--SSLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 6 PTINFIGF--NQDSTLLSVGSKDG-YKIFSCSPFEK---C---FSKDTE-GVSIV----EMLFS--SSLVAIVSIKQPRK 69 (391)
T ss_pred cceeeeee--ccceeEEEccCCCc-eeEEecCchHH---h---hcccCC-CeEEE----Eeecc--cceeEEEecCCCce
Confidence 35666667 68888999999997 46777643111 0 000110 11111 13343 445555543 356
Q ss_pred EEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1155 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1155 I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
+++++.++.. .+..+.-.+ .|.++. . +-+.+++.-.+ .|+|||+++.+ +..++.....+...+..++.+..
T Consensus 70 Lkv~~~Kk~~-~ICe~~fpt--~IL~Vr-m--Nr~RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~- 140 (391)
T KOG2110|consen 70 LKVVHFKKKT-TICEIFFPT--SILAVR-M--NRKRLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNA- 140 (391)
T ss_pred EEEEEcccCc-eEEEEecCC--ceEEEE-E--ccceEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCC-
Confidence 9999999888 777766543 388883 3 34566666554 49999999988 66666555455566777766665
Q ss_pred CCCEEEEEE--CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEe-CCCceEEEEeccCCc
Q 000700 1235 DPAKIVSAS--QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRYHHPS 1310 (1344)
Q Consensus 1235 ~g~~Lasgs--~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~-I~Iwd-~~g~~l~~l~~~h~~ 1310 (1344)
+.+++--+ ..|.|.+||..+. +++.++..|++.+.+++|+++|.+|||+|+.|+ |+||. -+|+.+..++- -.
T Consensus 141 -n~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR-G~- 216 (391)
T KOG2110|consen 141 -NCYLAYPGSTTSGDVVLFDTINL-QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR-GT- 216 (391)
T ss_pred -CceEEecCCCCCceEEEEEcccc-eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC-Cc-
Confidence 66777433 4699999999998 899999999999999999999999999999998 58999 57889988875 11
Q ss_pred cccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1311 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1311 f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.-..|.+++|||++++|++.|..++|.||.
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 235799999999999999999999999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-13 Score=152.11 Aligned_cols=264 Identities=14% Similarity=0.176 Sum_probs=181.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCcEEEEeeCCCCCCCCeEEEEEE------eeCCCCEEEEEECCCe
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGISKLCLV------NELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VW-d~~tg~~l~~~~~h~~~~~~ItsL~f~------ns~d~~~L~tgs~DG~ 1101 (1344)
++...+.|+.|+..+..+.+++ |..+.+| |..+. ......... .-|....+. -....+.++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~-s~~~~~~p~---df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRD-SVEVAKLPD---DFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccch-hhhhhhCCc---ccCCccccccccccCCCCCcceEEEEcCCce
Confidence 3445567899998888877777 5555555 44322 222221111 111111110 0123457888899999
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1181 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL 1181 (1344)
+.|.+-. ++.+ +.+..|.+.+.+ -.|+++|.-|+++|.||.|++|..... ++..-......|.|+
T Consensus 87 f~il~k~---~rVE-----~sv~AH~~A~~~----gRW~~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 87 FVILNKS---ARVE-----RSISAHAAAISS----GRWSPDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCA 151 (737)
T ss_pred EEEeccc---chhh-----hhhhhhhhhhhh----cccCCCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEE
Confidence 9887642 3333 346788888877 899999999999999999999985432 233333334459999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1182 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
.|.|+.+.++.+ ..|.+.+=.+...... -.+ +.|.+-|.++.|++. .+.+++|+.|-..++||-. +.++.
T Consensus 152 -~W~p~S~~vl~c-~g~h~~IKpL~~n~k~-i~W---kAHDGiiL~~~W~~~--s~lI~sgGED~kfKvWD~~--G~~Lf 221 (737)
T KOG1524|consen 152 -RWAPNSNSIVFC-QGGHISIKPLAANSKI-IRW---RAHDGLVLSLSWSTQ--SNIIASGGEDFRFKIWDAQ--GANLF 221 (737)
T ss_pred -EECCCCCceEEe-cCCeEEEeecccccce-eEE---eccCcEEEEeecCcc--ccceeecCCceeEEeeccc--Ccccc
Confidence 555665555543 3456666666555423 233 466799999999999 9999999999999999987 45777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
+-..|+.+|++++|.|+ ..++.||.+ +.+ +.. .+.+.|..++|++||..+++|+..|.+.
T Consensus 222 ~S~~~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~~-------p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFNPE-KDYLLWSYN-TAR-----------FSS-------PRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred cCChhccceeeeeeccc-cceeeeeee-eee-----------ecC-------CCccceEEEEEcCCCceeeccccCceEE
Confidence 77889999999999999 777777642 333 211 2348999999999999999999988775
Q ss_pred E
Q 000700 1342 I 1342 (1344)
Q Consensus 1342 I 1342 (1344)
+
T Consensus 282 ~ 282 (737)
T KOG1524|consen 282 V 282 (737)
T ss_pred E
Confidence 3
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-12 Score=155.99 Aligned_cols=257 Identities=11% Similarity=0.183 Sum_probs=175.3
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcE--EEEe----eCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1032 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTL--LNSF----DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1032 ~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg~~--l~~~----~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
..|+|+.|+|..+ +++.|..+|.|.+||...+.. ...+ ..|. ..++.+.|..+..+.-+++++.||.|..
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~---~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS---EPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC---cCeEEEEEeccCCCCceEEEecCCcEee
Confidence 6799999999876 667777999999999987654 2222 2455 7899999977666677999999999999
Q ss_pred EeccCCCCceeEEe-eeecccCCCCCccccceEEEEecCC-CeEEEEECCCeEEEEECCCCce-e------eeeecCCCC
Q 000700 1105 WKDYDQKDKQKLVT-AFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQ-M------VNPIPSSSD 1175 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs-~~~~l~~h~~~V~s~~~~v~ws~~~-~~Llagg~Dg~I~VWDl~~~~~-~------v~~i~~~~~ 1175 (1344)
|++.......+... ......+....-...+++++|.+.. ..+++|+++|.|..-+...... . +.....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98754211111110 0000001111112223458887654 4577778899988744332220 1 223334434
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~ 1255 (1344)
+|+++. .+|=+..+...+.|.+|++|...........+ ..+...|++++|+|. ....|+++..||.|.+||+..
T Consensus 400 -~v~~v~-~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---~~~~~~v~~vaWSpt-rpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 400 -PVYAVS-RNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---DSSPDYVTDVAWSPT-RPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred -ceEeee-cCCCccceeeeeccceeEeccccCCCCcchhh---hhccceeeeeEEcCc-CceEEEEEcCCCceehhhhhc
Confidence 599994 44444444444449999999887433333333 234467999999998 677899999999999999975
Q ss_pred Cc-cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1256 HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1256 ~~-~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
.. .++.+...+....+.+.|++.|++|++|...|++.+|++.
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 42 5666766667778889999999999999999999999974
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=138.64 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=174.9
Q ss_pred CCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEECCC--CcEE--EEeeCCC--CCCCCeEEEEEEeeCCCCEEEEEE
Q 000700 1029 RFEKGTKTALLQPFSP-----IVVAADENERIKIWNYEE--DTLL--NSFDNHD--FPDKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~-----~Latgs~dg~I~VWd~~t--g~~l--~~~~~h~--~~~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
.|..+++.+.|.|+.. +||+. +..+|+|.+.. ++.. ..+..+. ....++++..| |+-+.+++.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW-ne~dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW-NEVDPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCccccccc-ccCCcceeEeec
Confidence 3567899999999874 55554 46899998863 2211 1122211 12368999999 577899999999
Q ss_pred CCCeEEEEeccCC-CCceeEEeeeecccCCCCCccccceEEEEecCCCeEE-EEECCCeEEEEECCCCceeeeee-cCCC
Q 000700 1098 CNGNIRIWKDYDQ-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY-ASGEVSSIMLWDLEKEQQMVNPI-PSSS 1174 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~-~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll-agg~Dg~I~VWDl~~~~~~v~~i-~~~~ 1174 (1344)
-|-+..|||++.. .+..+ ..+-.|..+|.. ++|...+..++ +.|.||.||+||++... .-..+ ....
T Consensus 171 iDTTCTiWdie~~~~~~vk-----TQLIAHDKEV~D----Iaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~ 240 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVK-----TQLIAHDKEVYD----IAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPS 240 (364)
T ss_pred ccCeEEEEEEeecccccee-----eEEEecCcceeE----EEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCC
Confidence 9999999999873 11112 225689999999 88887655555 45899999999999876 33333 2222
Q ss_pred -CCCeeEEEEEcCCCCEEEEEECC-CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 000700 1175 -DCSISALTASQVHGGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD 1252 (1344)
Q Consensus 1175 -~~~VtsL~~~s~dg~~L~sGs~D-GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWD 1252 (1344)
..+...+++...+.+++++-..| ..|.+.|+|.....+..+ ++|.+.|+.++|.|. ....|++++.|..+.+||
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L---~~H~a~VNgIaWaPh-S~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL---RNHQASVNGIAWAPH-SSSHICTAGDDCQALIWD 316 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh---hcCcccccceEecCC-CCceeeecCCcceEEEEe
Confidence 44577887777788888875554 569999999887666644 477799999999999 789999999999999999
Q ss_pred CCCCc-----cceEEEecCCCCeEEEEEcCC-CCEEEEEeC
Q 000700 1253 IRNHK-----DAYLTIDAHRGSLSALAVHRH-APIIASGSA 1287 (1344)
Q Consensus 1253 lr~~~-----~~v~tl~~h~~~Vtsla~spd-g~~LasgS~ 1287 (1344)
+.... .++..+. ..+.|+.+.|++. ...++.+..
T Consensus 317 l~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 98542 2333444 4678999999964 557877654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-12 Score=145.33 Aligned_cols=277 Identities=16% Similarity=0.257 Sum_probs=196.5
Q ss_pred CCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1030 FEKGTKTALLQPFSPIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~L-atgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
+....+.|..+|||+|+ |+|...-.|+|||+..- --.|.-|.. ..+..+..+ +.|-..++.-..|.+|.+..-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--SLKFERhlD--ae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--SLKFERHLD--AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccc--eeeeeeccc--ccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 34567889999999964 57778999999998743 333444441 233333332 4555556666677777665432
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
. .. +.-.|-..+..++++..+.-|+++|....|+-++++.+. .+..+...... ++++ ..++..
T Consensus 125 G---~h-----------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~~-lN~v-~in~~h 187 (703)
T KOG2321|consen 125 G---RH-----------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSGE-LNVV-SINEEH 187 (703)
T ss_pred C---ee-----------eeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-ccccccccccc-ceee-eecCcc
Confidence 2 10 111222233346777667778888888889999999999 88888876554 8888 556777
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCC---CCCCC-----CeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPH---TQQVE-----RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~---~~h~~-----~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
.+|++|+.||.|..||.|+... +..+... ..|.+ .|+++.|+.+ |-.+++|+.+|.|.|||+|.. .++
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~-~pl 263 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRAS-KPL 263 (703)
T ss_pred ceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccC-Cce
Confidence 8999999999999999998763 2222111 12223 4999999988 999999999999999999987 454
Q ss_pred EE-EecCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1261 LT-IDAHRGSLSALAVHRH--APIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1261 ~t-l~~h~~~Vtsla~spd--g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.. -.+..-+|..+.|.+. +..+++. ....++||| .+|+....+.+ . ..++.+++-|++.++.++..
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t--------~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-T--------SDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-c--------CCcCceeeecCCceEEEecC
Confidence 33 2334558889999775 4456654 346789999 78999988876 2 46999999999999999988
Q ss_pred CCeEEE
Q 000700 1337 DACVSI 1342 (1344)
Q Consensus 1337 Dg~I~I 1342 (1344)
++.+..
T Consensus 334 ~~~m~~ 339 (703)
T KOG2321|consen 334 SSKMHT 339 (703)
T ss_pred CCccee
Confidence 776544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-12 Score=141.42 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=143.9
Q ss_pred eEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000700 1135 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1214 (1344)
Q Consensus 1135 ~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~ 1214 (1344)
.+++++.++..+++++.||++|||+..+.. .+.....|+.. |.++ .++++|+.|++-+.| ..+|||.+++... ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~e-V~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~-a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAE-VKDL-DFSPDGKFLASIGAD-SARVWSVNTGAAL-AR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCc-cccc-eeCCCCcEEEEecCC-ceEEEEeccCchh-hh
Confidence 358999999999999999999999988877 67777777776 9999 788999999999999 9999999998532 22
Q ss_pred ecCCCCCCCCeEEEEEecCCCC---C--EEEEEECCCcEEEEECCCCcc----ceEEEecCCCCeEEEEEcCCCCEEEEE
Q 000700 1215 TRPHTQQVERVVGISFQPGLDP---A--KIVSASQAGDIQFLDIRNHKD----AYLTIDAHRGSLSALAVHRHAPIIASG 1285 (1344)
Q Consensus 1215 ~~~~~~h~~~I~sva~sp~~~g---~--~Lasgs~DG~I~IWDlr~~~~----~v~tl~~h~~~Vtsla~spdg~~Lasg 1285 (1344)
. +..+.......+.|+.+ + . .++.-..-+.|+.||+..... ...+.......|++++++++|+++|.|
T Consensus 223 ~-t~~~k~~~~~~cRF~~d--~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 K-TPFSKDEMFSSCRFSVD--NAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred c-CCcccchhhhhceeccc--CCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2 21233455667778766 3 2 222333446677777664422 122222234479999999999999999
Q ss_pred eCCCeEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1286 SAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1286 S~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
+.||.|.|++... +.+.-++. .|...|+.+.|+|+.+++++.+.|..+.|
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999999543 44444433 24578999999999999999888887765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=146.92 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=199.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEE-CC-CC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWN-YE-ED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd-~~-tg--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
|...++|.++||.+.++|+|..||.|.||. .. ++ .....+.=|. ..|+++.| +.+|.+|++||..|.+-+|
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---~~V~~L~f--S~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---DEVNSLSF--SSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc---cccceeEE--ecCCceEeecccceEEEEE
Confidence 345589999999999999999999999995 33 12 3344566676 78999999 7899999999999999999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecC----------CCC
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS----------SSD 1175 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~----------~~~ 1175 (1344)
.+.+ ++.++ ++...+.|.. +.+++++....+...|+.|.+....+.. ...++.+ ...
T Consensus 279 q~~T--~~kqf------LPRLgs~I~~----i~vS~ds~~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 279 QLET--GKKQF------LPRLGSPILH----IVVSPDSDLYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred eecC--CCccc------ccccCCeeEE----EEEcCCCCeEEEEecCceEEEEeccchh-hhhhccCccCCCcccccccc
Confidence 9987 33332 4556666766 8899999999999999999998775443 2222221 123
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC-----C---CCCCCeEEEEEecCCCCCEEEEEEC---
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----T---QQVERVVGISFQPGLDPAKIVSASQ--- 1244 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~-----~---~h~~~I~sva~sp~~~g~~Lasgs~--- 1244 (1344)
+-.+.+ ..+|..+.++-.+..|.|.+||+-+.... ..++.. . .+.-.++.++.+.. |.+++|+-.
T Consensus 346 ~l~t~~-~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d 421 (792)
T KOG1963|consen 346 SLTTGV-SIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARID 421 (792)
T ss_pred ccceeE-EEcCCCCceeecCCCceEEEEecccccee-eeEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeeh
Confidence 334555 56677777888889999999999877633 222211 1 12335677777776 889988742
Q ss_pred -----CC--cEEEEECCCCcc---c-eEEEecCCCCeEEEEEcC-CCC-EEEEEeCCCeEEEEeCCCc-e------EEEE
Q 000700 1245 -----AG--DIQFLDIRNHKD---A-YLTIDAHRGSLSALAVHR-HAP-IIASGSAKQLIKVFSLEGE-Q------LGTI 1304 (1344)
Q Consensus 1245 -----DG--~I~IWDlr~~~~---~-v~tl~~h~~~Vtsla~sp-dg~-~LasgS~Dg~I~Iwd~~g~-~------l~~l 1304 (1344)
|| .+|+|-.....+ . ......|+..+....+.+ ... .+++++.||.++||-+++. . ..+.
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 33 478897764421 1 122346776666555543 333 7889999999999986321 1 1111
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1305 ~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.. -..| |..++++++|+.||..|+.+ .|++|.|||
T Consensus 502 ~~-i~sy---~k~~i~a~~fs~dGslla~s-~~~~Itiwd 536 (792)
T KOG1963|consen 502 KA-IGSY---HKTPITALCFSQDGSLLAVS-FDDTITIWD 536 (792)
T ss_pred ee-eecc---ccCcccchhhcCCCcEEEEe-cCCEEEEec
Confidence 11 0011 45789999999999777665 688999997
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-11 Score=138.72 Aligned_cols=249 Identities=9% Similarity=0.123 Sum_probs=161.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CCeEEEEecc
Q 000700 1032 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKDY 1108 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs-~dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl~ 1108 (1344)
..+..+.++|++++|++++ .++.|.+|+++. ++. ....... .......++| +++++++++++. ++.|.+|++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~-~~~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP-LPGSPTHIST--DHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-CCCCceEEEE--CCCCCEEEEEEcCCCeEEEEEEC
Confidence 4678899999999887765 588999999873 432 2221111 1135678888 789998888764 8899999986
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-----eecCCCCCCeeEEE
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN-----PIPSSSDCSISALT 1182 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~-----~i~~~~~~~VtsL~ 1182 (1344)
......+.+ ..+.+ ...... ++++|+++++++++ .++.|.+||+.+.. .+. .+....+.....+
T Consensus 111 ~~g~~~~~~---~~~~~-~~~~~~----~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~- 180 (330)
T PRK11028 111 KDGIPVAPI---QIIEG-LEGCHS----ANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHM- 180 (330)
T ss_pred CCCCCCCce---eeccC-CCcccE----eEeCCCCCEEEEeeCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceE-
Confidence 421111111 11222 122233 67899999998776 67999999998643 221 1111122335677
Q ss_pred EEcCCCCEEEEEEC-CCeEEEEECCCC--C-eeeEeecCCC---CCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEECC
Q 000700 1183 ASQVHGGQLAAGFV-DGSVRLYDVRTP--D-MLVCSTRPHT---QQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIR 1254 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~-DGsVrIwDlr~~--~-~~v~~~~~~~---~h~~~I~sva~sp~~~g~~Lasgs~-DG~I~IWDlr 1254 (1344)
.++++|++++++.. +++|.+||+... + ..+....... .+..+...+.++|+ +++++++.. ++.|.+|++.
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd--g~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD--GRHLYACDRTASLISVFSVS 258 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC--CCEEEEecCCCCeEEEEEEe
Confidence 67789999888776 899999999742 2 1222221111 11223456889999 898888854 7899999997
Q ss_pred CCccc---eEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCC
Q 000700 1255 NHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLE 1297 (1344)
Q Consensus 1255 ~~~~~---v~tl~~h~~~Vtsla~spdg~~LasgS~-Dg~I~Iwd~~ 1297 (1344)
..+.. +..+.. ......+.++|+|++|+++.. +++|.+|+++
T Consensus 259 ~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 259 EDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 54222 222222 124568899999998887765 8899999864
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=134.66 Aligned_cols=231 Identities=14% Similarity=0.219 Sum_probs=174.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
..+|+|.+|++|+..+|++-....|.||..... +...+++.|. ..|+.+.| .+..+.|++++.|..-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdW--ap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDW--APKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---cceeEEee--cCCCCceeEccCCCCcccccc
Confidence 368999999999999999999999999988755 4677888899 89999999 789999999999999999998
Q ss_pred -cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCCCeeEEEEE
Q 000700 1108 -YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1108 -~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~--~v~~i~~~~~~~VtsL~~~ 1184 (1344)
....-+..++ +..+....++ +.|+|.++.+++|+..+.|.||-.+.+.. .-+.++....+.|+++ .+
T Consensus 85 ~~~~~Wkptlv-----LlRiNrAAt~----V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dW 154 (361)
T KOG1523|consen 85 PSGGTWKPTLV-----LLRINRAATC----VKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DW 154 (361)
T ss_pred CCCCeecccee-----EEEeccceee----EeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-ec
Confidence 3322334444 5556655666 99999999999999999999999887761 1122333344559999 67
Q ss_pred cCCCCEEEEEECCCeEEEEECC-----CCCe---------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVR-----TPDM---------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr-----~~~~---------~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
.+++-++++|+.|+..|+|..- .... .-..+.......++|..+.|+|. |..|+-.+.|..+.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s--G~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS--GNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC--CCEeeEecCCCceEE
Confidence 7889999999999999998642 1110 00111112234589999999999 999999999999999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCC
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRH 1278 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spd 1278 (1344)
-|.....+.+.+.....-+..++.|-.+
T Consensus 233 ~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 233 VDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred eecCCCchhccchhhccCCceeeEeecC
Confidence 9988764344444433356666666443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.6e-12 Score=139.51 Aligned_cols=208 Identities=13% Similarity=0.247 Sum_probs=158.8
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-------cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC
Q 000700 1028 TRFEKGTKTALLQPFSP-IVVAADENERIKIWNYEED-------TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1099 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg-------~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1099 (1344)
..|..+|..++|.|..+ .||+|++|.+|.||++..+ +.+..+.+|. .+|--++|.+ .-.+.|++++.|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---rrVg~V~wHP-tA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---RRVGLVQWHP-TAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---eeEEEEeecc-cchhhHhhccCC
Confidence 45778999999999765 7889999999999998654 4567788999 8999999953 356789999999
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1179 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt 1179 (1344)
.+|.+|++.+ ++..+. +. |...|.+ +.|+.+|+.+++++.|+.|||||.+++. .+..-.+|.+..-.
T Consensus 154 n~v~iWnv~t--geali~-----l~-hpd~i~S----~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 154 NTVSIWNVGT--GEALIT-----LD-HPDMVYS----MSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPA 220 (472)
T ss_pred ceEEEEeccC--Cceeee-----cC-CCCeEEE----EEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCcc
Confidence 9999999977 433322 33 8888887 9999999999999999999999999999 88877777665434
Q ss_pred EEEEEcCCCCEEEEEEC---CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000700 1180 ALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs~---DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
.. .|-.+|.++.+|+. +..+-+||...-+...... .. ...+.|.---|.++ .+-..++|-.|+.|+.|.+...
T Consensus 221 Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-el-DtSnGvl~PFyD~d-t~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 221 RA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-EL-DTSNGVLLPFYDPD-TSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ee-EEeccCceeeeccccccccceeccCcccccCcceeE-Ee-ccCCceEEeeecCC-CCEEEEEecCCcceEEEEecCC
Confidence 44 34457777777764 6779999987655332221 22 22356776677888 3344456668999999999876
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=139.98 Aligned_cols=186 Identities=17% Similarity=0.257 Sum_probs=142.4
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1144 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~-dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
..++++-..|.|++||..+++ .+..++++... +..+.+.+. .+..+.+++.||+|++||+|......+. ..++|.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~-~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPAT-TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--SWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCc-ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--eccCCC
Confidence 457777899999999999998 88999887665 677755554 5678999999999999999987633322 223333
Q ss_pred -CCeEEEEEecCCCCCEEEEEEC----CCcEEEEECCCCccceEEE-ecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 000700 1223 -ERVVGISFQPGLDPAKIVSASQ----AGDIQFLDIRNHKDAYLTI-DAHRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1223 -~~I~sva~sp~~~g~~Lasgs~----DG~I~IWDlr~~~~~v~tl-~~h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd 1295 (1344)
.+..+++..-. ++.+++|+. |-.|.+||+|...+++..+ ..|...|+++.|||..+ +|++||.||.|.|||
T Consensus 117 ~~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 46667776545 788888863 5679999999886645444 57999999999999765 999999999999999
Q ss_pred CCCce-----EEEEeccCCccccccCCCeEEEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1296 LEGEQ-----LGTIRYHHPSFMAQKIGSVNCLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1296 ~~g~~-----l~~l~~~h~~f~~~~~~~V~slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
+++.. +.++ .+.+.|.++.|+.++ +.+.+-+..+...+|+
T Consensus 195 ~~~d~EeDaL~~vi---------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~e 240 (376)
T KOG1188|consen 195 TKKDNEEDALLHVI---------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYE 240 (376)
T ss_pred cCCCcchhhHHHhh---------cccceeeeeeeecCCcceEEEEEccCceeEEE
Confidence 76542 1222 234679999999888 5577778888899885
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=129.19 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=164.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC--eEEEEeccC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYD 1109 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~ 1109 (1344)
..+..+.|+++...|.+|+.|| .++|+.+......... .++..|-.+-| ...+++..+.+. .+++++...
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~---~~~~~IvEmLF----SSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD---TEGVSIVEMLF----SSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc---CCCeEEEEeec----ccceeEEEecCCCceEEEEEccc
Confidence 3567777999999999999776 5788876544321111 12246667777 456777666543 477777754
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC--CCCCeeEEEEEcCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS--SDCSISALTASQVH 1187 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~--~~~~VtsL~~~s~d 1187 (1344)
....+++. + ..+|-+ +.+ +.+.|++.=.+. |+|||++..+ .+.++..- ....+.++ ..+..
T Consensus 78 ~~~ICe~~-----f---pt~IL~----Vrm--Nr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~Al-S~n~~ 140 (391)
T KOG2110|consen 78 KTTICEIF-----F---PTSILA----VRM--NRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCAL-SPNNA 140 (391)
T ss_pred CceEEEEe-----c---CCceEE----EEE--ccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEee-ccCCC
Confidence 22222221 1 122322 444 356677765544 9999999999 88888754 22235555 44455
Q ss_pred CCEEEEE--ECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEECCCCccceEEEe
Q 000700 1188 GGQLAAG--FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1188 g~~L~sG--s~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-I~IWDlr~~~~~v~tl~ 1264 (1344)
+.+++.- ...|.|.+||..+-+ .+..+. .|++.+-+++|+++ |.+|||+|..|+ ||||.+.++ +.+.+|+
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~---aH~~~lAalafs~~--G~llATASeKGTVIRVf~v~~G-~kl~eFR 213 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQ-PVNTIN---AHKGPLAALAFSPD--GTLLATASEKGTVIRVFSVPEG-QKLYEFR 213 (391)
T ss_pred CceEEecCCCCCceEEEEEcccce-eeeEEE---ecCCceeEEEECCC--CCEEEEeccCceEEEEEEcCCc-cEeeeee
Confidence 5677753 346999999998877 455443 67799999999999 999999999998 799999998 7888887
Q ss_pred cC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1265 AH--RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1265 ~h--~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
-. ...|.+++|||++++|++.|..++|+||.++
T Consensus 214 RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 214 RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 33 3468899999999999999999999999864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-12 Score=145.29 Aligned_cols=243 Identities=17% Similarity=0.236 Sum_probs=171.4
Q ss_pred EcCCCCEEEE--EECCCcEEEEECCCC-cE----EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1039 LQPFSPIVVA--ADENERIKIWNYEED-TL----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1039 fspdg~~Lat--gs~dg~I~VWd~~tg-~~----l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
|+.+...+|+ ++..|.|-||++... ++ +-.+.+ +..|+++.|. .-|...|+++++||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~N----gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFN----GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccccc----CceeeecccC-CCChHHeeecccCceEEEEEeccCC
Confidence 4445555554 456899999998743 22 222222 3579999993 3588899999999999999997754
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCE
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~ 1190 (1344)
......+.-..+..|...|.+ +.|+|-. ..|++++.|-+|++||+.+.. ....+.+|.+. |.++ .|+++|+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~s----lRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdq-If~~-AWSpdGr~ 734 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITS----LRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQ-IFGI-AWSPDGRR 734 (1012)
T ss_pred CCcccCCcceeeecccceEEE----EEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCc-eeEE-EECCCCcc
Confidence 443334444568889999988 8999864 456677899999999999998 88889999887 9999 88999999
Q ss_pred EEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC----CcEEEEECCCCc-cceEEEec
Q 000700 1191 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA----GDIQFLDIRNHK-DAYLTIDA 1265 (1344)
Q Consensus 1191 L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D----G~I~IWDlr~~~-~~v~tl~~ 1265 (1344)
+++.+.||+|++|..|+++..++.-+...+ ..--.|.|--+ |+++++.+.| ..|.+||..+.. .++.+..-
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacd--gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACD--GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEec--CcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999999988866554333222 22334566656 8888877766 458888877542 23332221
Q ss_pred CCC-CeEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 000700 1266 HRG-SLSALAVHRHA-PIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1266 h~~-~Vtsla~spdg-~~LasgS~Dg~I~Iwd~~ 1297 (1344)
.-. .+.--.+.+|. -++++|-.|..|.+|.+.
T Consensus 811 Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 100 01111123343 478899999999999954
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=137.44 Aligned_cols=259 Identities=14% Similarity=0.163 Sum_probs=183.1
Q ss_pred EeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC--CceeEEeeeecccC--CCCCccccceEEEEecCC
Q 000700 1068 SFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK--DKQKLVTAFSSIQG--HKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1068 ~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~--~~~~lvs~~~~l~~--h~~~V~s~~~~v~ws~~~ 1143 (1344)
.+.+|. +.|.++.| +.++.+|++|++|..+++|++...- ...+.+ . +.+ |...|. +++|...+
T Consensus 51 D~~~H~---GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI---~-~~~~~H~SNIF----~L~F~~~N 117 (609)
T KOG4227|consen 51 DVREHT---GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI---G-VMEHPHRSNIF----SLEFDLEN 117 (609)
T ss_pred hhhhhc---cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcCCCCc---e-eccCccccceE----EEEEccCC
Confidence 355787 89999999 6689999999999999999985410 111111 1 222 334444 49999889
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1144 GYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~-~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
..+++|+.+++|...|+++.+ .+..+... ....|+.+ ..+|..+.|++.+.+|.|.+||.|........+ ......
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q-si~V~~~~~~~~~VY~m-~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ-SIYVANENNNRGDVYHM-DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccce-eeeeecccCcccceeec-ccCCCCceEEEEecCceEEEEeccCCCCCCcee-eecCCC
Confidence 999999999999999999988 55554432 22359999 566778999999999999999999765322222 111234
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------RGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
....++.|+|. ...+|++.+..|-+.+||++....++....+. ...-.++.|+|+|..|.+--....-.+||+
T Consensus 195 ~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 195 KNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred ccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 66788999998 67889999999999999999775554433322 223356789999998887655555667886
Q ss_pred CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1297 EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1297 ~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
-.+.+..++.-|...-.-.+..+.+++|.-+.. +++|+.+-.|.+|.
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWK 320 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEe
Confidence 665555555423210111335677888886655 88999999999994
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-11 Score=131.01 Aligned_cols=257 Identities=15% Similarity=0.258 Sum_probs=177.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-c----EEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEED-T----LLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg-~----~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
.-|.++.|..+|.+|+||+.+|.|.++.-+.. + ....++.|.+. ...|..+.|+...+...++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 46899999999999999999999999965432 2 44556667643 2468899997666777888899
Q ss_pred CCCeEEEEeccCCCCcee-----------EE-----------------eeeecc-cCCCCCccccceEEEEecCCCeEEE
Q 000700 1098 CNGNIRIWKDYDQKDKQK-----------LV-----------------TAFSSI-QGHKPGVRCSNVVVDWQQQSGYLYA 1148 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~-----------lv-----------------s~~~~l-~~h~~~V~s~~~~v~ws~~~~~Lla 1148 (1344)
.|.+|++|.+.....+.+ .+ .+-+.+ ..|..-|.+ +.++.+...+++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS----IS~NsD~Et~lS 181 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS----ISVNSDKETFLS 181 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee----eeecCccceEee
Confidence 999999999865322210 00 000111 234444555 566666665555
Q ss_pred EECCCeEEEEECCCCce--eeeeecCCCC----CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE---eecC--
Q 000700 1149 SGEVSSIMLWDLEKEQQ--MVNPIPSSSD----CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC---STRP-- 1217 (1344)
Q Consensus 1149 gg~Dg~I~VWDl~~~~~--~v~~i~~~~~----~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~---~~~~-- 1217 (1344)
.+|=.|.+|+++-..+ -+..++.+.- .-|++-.+.+...+.|+-.+..|+|++.|+|....+-. .+..
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4566799999874331 2334443321 12666666666788999999999999999995431111 1100
Q ss_pred -------CCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC------------C---eEEEEE
Q 000700 1218 -------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG------------S---LSALAV 1275 (1344)
Q Consensus 1218 -------~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~------------~---Vtsla~ 1275 (1344)
+.+--+.|..+.|+.. |+++++-+. -+|++||+.....++.+++.|.. . -..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~s--GryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS--GRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC--CcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 0112246889999998 999998654 58999999776689999988742 2 245789
Q ss_pred cCCCCEEEEEeCCCeEEEEeC
Q 000700 1276 HRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1276 spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
+.++.+++||+....+++|+.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred cCCcceEecccccceEEEecC
Confidence 999999999999999999994
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-11 Score=143.76 Aligned_cols=291 Identities=14% Similarity=0.173 Sum_probs=198.7
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEECCCeEEEEeccCCCCcee
Q 000700 1037 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQKDKQK 1115 (1344)
Q Consensus 1037 l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~~~~~~ 1115 (1344)
-.|++|+++++... +..|.||...+|+++..+.+|. ..++++.+.+++.. .++++++.||.|++||.... +
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~----~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG----E 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCCc----E
Confidence 34899999888777 7899999999999999999999 88999998655444 68889999999999998541 1
Q ss_pred EEeeee--------------------------------cccCCC----------------CCcccc---ceEEEEecCCC
Q 000700 1116 LVTAFS--------------------------------SIQGHK----------------PGVRCS---NVVVDWQQQSG 1144 (1344)
Q Consensus 1116 lvs~~~--------------------------------~l~~h~----------------~~V~s~---~~~v~ws~~~~ 1144 (1344)
+.+.+. ..+.+. ..+... .-++.+++ ++
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~g 172 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SG 172 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-Cc
Confidence 111100 000000 000000 00122222 22
Q ss_pred eEEEEECCCeEEEEECCCCc--eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCC--CCeeeEeecCCCC
Q 000700 1145 YLYASGEVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT--PDMLVCSTRPHTQ 1220 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~--~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~--~~~~v~~~~~~~~ 1220 (1344)
.+.....+..+.+|+..++. .+...+..++...+++. .+++.++++++|..||.|.+|.--. .... ....+.-
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~-~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~--t~t~lHW 249 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCV-ALSPNERYLAAGDSDGRILVWRDFGSSDDSE--TCTLLHW 249 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeE-EeccccceEEEeccCCcEEEEeccccccccc--cceEEEe
Confidence 22333334457778777643 11223333444447777 7889999999999999999995433 2211 1112335
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCc
Q 000700 1221 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGE 1299 (1344)
Q Consensus 1221 h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~g~ 1299 (1344)
|...|++++|+++ |.+|++|+..|.+.+|.+.++ + .+-+.--.++|..+.++||+.+.+....|..|.+... +-.
T Consensus 250 H~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~~T~-~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 250 HHDEVNSLSFSSD--GAYLLSGGREGVLVLWQLETG-K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cccccceeEEecC--CceEeecccceEEEEEeecCC-C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 7789999999999 999999999999999999988 3 3444455789999999999999999999999999885 333
Q ss_pred eEEEEeccCCcc----ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1300 QLGTIRYHHPSF----MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1300 ~l~~l~~~h~~f----~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
...++.+ -... ..+..+-.+.++++|--+.++-.+..|+|.+||
T Consensus 326 ~k~tIsg-i~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 326 IKSTISG-IKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred hhhhccC-ccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEe
Confidence 3333332 1111 223446678889999767777788899999886
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=133.62 Aligned_cols=247 Identities=18% Similarity=0.249 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCcEEEEe------eCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEE
Q 000700 1032 KGTKTALLQPFSP--IVVAADENERIKIWNYEEDTLLNSF------DNHDFPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1032 ~~I~~l~fspdg~--~Latgs~dg~I~VWd~~tg~~l~~~------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~Ir 1103 (1344)
..|+.++|.-+++ .|+..+.+..+.....+........ .... ..|..++. -...|++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~---~~I~gl~~----~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT---KSIKGLKL----ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccccccc---ccccchhh----cCCEEEEEecCCcEE
Confidence 3566777765554 4444446667777776655444332 2233 67878776 346788889999999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEE-EECC--CeEEEEECCCCceeeeeecCC-------
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEV--SSIMLWDLEKEQQMVNPIPSS------- 1173 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla-gg~D--g~I~VWDl~~~~~~v~~i~~~------- 1173 (1344)
+|......-...... .+..+ ..+.. +.-++...++++ ||.. ..+.+||+++.+ .+..-+.-
T Consensus 129 ~~~~k~~d~hss~l~---~la~g-~g~~~----~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLI---KLATG-PGLYD----VRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPNDRLGL 199 (412)
T ss_pred EEeccCCccccccce---eeecC-Cceee----eccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCCccccc
Confidence 999875321111110 11111 12222 333344555655 6766 789999999876 44332221
Q ss_pred -CCCCeeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000700 1174 -SDCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1174 -~~~~VtsL~~~s~-dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IW 1251 (1344)
..-+++++.|.++ ....|++++.-+.||+||.+.+..++..+... ...|+++...|+ ++.+++|..-|.+..|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~---E~~is~~~l~p~--gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL---ENPISSTGLTPS--GNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc---cCcceeeeecCC--CcEEEEecccchhhee
Confidence 1123667755443 16789999999999999999888888877544 388999999999 9999999999999999
Q ss_pred ECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc
Q 000700 1252 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1252 Dlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~ 1299 (1344)
|++.+......+++-.+.|+++..||.++++|+++-|+.|+|+|+...
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 999984444558888999999999999999999999999999997653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.5e-11 Score=144.23 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=160.7
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000700 1052 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1128 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1128 (1344)
+..|.+||.+... ...+..+. ..+.+..| ++||+.|+.++.+ ..|.+||+.+ +..+.+ ..+.++.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l---~~~~g~~- 250 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS---QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRS--GARKVV---ASFRGHN- 250 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC---CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCC--CceEEE---ecCCCcc-
Confidence 5789999987444 45566666 67899999 7899999887654 3699999865 433333 2233332
Q ss_pred CccccceEEEEecCCCeEEEEE-CCCeEEEE--ECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 000700 1129 GVRCSNVVVDWQQQSGYLYASG-EVSSIMLW--DLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYD 1204 (1344)
Q Consensus 1129 ~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VW--Dl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs-~DGsVrIwD 1204 (1344)
.. ..|+|++..|+.++ .+|.+.|| |+.++. ...+..+.. .+.+. .++++|+.++.++ .+|...+|+
T Consensus 251 --~~----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 251 --GA----PAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAG-NNTEP-SWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred --Cc----eeECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCC-CcCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 23 79999999988875 67765555 666555 444554433 36677 6788999777655 578888888
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
+.......... .. .. .+..|+|+ |+.|+.++.++ +.+||+.++ ... .+..+ ....++.|+|+|++|+.
T Consensus 321 ~~~~~~~~~~l-~~---~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 321 MSASGGGASLV-GG---RG--YSAQISAD--GKTLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESPSISPNGIMIIY 388 (429)
T ss_pred EECCCCCeEEe-cC---CC--CCccCCCC--CCEEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCceECCCCCEEEE
Confidence 76433222222 22 22 45789999 99998887765 556999876 332 22222 12356789999999999
Q ss_pred EeCCCeEEEEe---CCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1285 GSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1285 gS~Dg~I~Iwd---~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
++.++.+.+|+ .+|+.+..+.. |. +.+...+|+|.
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPG-SD-------GQVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccC-CC-------CCCCCcccCCC
Confidence 99888887776 57888888876 55 67888999985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.1e-11 Score=131.85 Aligned_cols=250 Identities=15% Similarity=0.227 Sum_probs=181.6
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
.+|++++|...+..+.+...+.+..+..+.+....-...+ ............|.+. + ..++.|+++-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-~~~~~~~l~~~~I~gl----~--~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-DDAKTVSLGTKSIKGL----K--LADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccc-ccccccccccccccch----h--hcCCEEEEEecCCcEE
Confidence 5788999965556667777667777777776542111111 1112233444555552 2 2478899999999999
Q ss_pred EEECCCCc---eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECC--CeEEEEECCCCCeeeEeecCCC------CCCCCe
Q 000700 1157 LWDLEKEQ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVD--GSVRLYDVRTPDMLVCSTRPHT------QQVERV 1225 (1344)
Q Consensus 1157 VWDl~~~~---~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~D--GsVrIwDlr~~~~~v~~~~~~~------~h~~~I 1225 (1344)
+|....+. .....+..+ ..+..|.-.+....++++|+.. ..+++||+...++.... +... .-.-|+
T Consensus 129 ~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a-KNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA-KNVPNDRLGLRVPVWI 205 (412)
T ss_pred EEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhcccceeeeecccceeeeec-cCCCCccccceeeeee
Confidence 99987432 023444443 2366665555566778889998 88999999877533221 1111 012478
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceE-EE-
Q 000700 1226 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL-GT- 1303 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l-~~- 1303 (1344)
+.+.|-++.....|++++.-+.|++||.+.++.|+..+.....+|+++...|.+.++++|..-|.+..||..+..+ ..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 8888877534678999999999999999999999999999999999999999999999999999999999765544 33
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+++ -.+.|+++..||.+++||++|-|..|||+|
T Consensus 286 ~kg--------~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 286 LKG--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCC--------ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 333 348999999999999999999999999987
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-10 Score=120.86 Aligned_cols=236 Identities=15% Similarity=0.213 Sum_probs=163.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE------EEEeeC--C--CCCCCCeEEEEEEeeCCCCEEEEEE
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL------LNSFDN--H--DFPDKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~------l~~~~~--h--~~~~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
..|..+|..++|+ +.+|++|+ ||.|+-|.|..... +...+. + ..+--.|++|-. .|..+-+++++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~Ag 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFAG 133 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEec
Confidence 4577899999998 56888888 69999999864321 111111 1 111236788877 55666677777
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC----
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---- 1173 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~---- 1173 (1344)
.|+.+.-||+++ ++.+. .+++|+.-+.+ +.-...++.+++|+.||++|+||.++.+ ++..+...
T Consensus 134 GD~~~y~~dlE~--G~i~r-----~~rGHtDYvH~----vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 134 GDGVIYQVDLED--GRIQR-----EYRGHTDYVHS----VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPN 201 (325)
T ss_pred CCeEEEEEEecC--CEEEE-----EEcCCcceeee----eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChh
Confidence 999999999987 66654 48999999988 5555578899999999999999999999 88877532
Q ss_pred -----CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcE
Q 000700 1174 -----SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1248 (1344)
Q Consensus 1174 -----~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I 1248 (1344)
-+..|.++ ..+.+.+++|+ ...+.+|.+|..+ ..+++ ... ..+..+.|..+ .+++++..+.|
T Consensus 202 ~lRp~~g~wigal---a~~edWlvCGg-Gp~lslwhLrsse-~t~vf-pip---a~v~~v~F~~d----~vl~~G~g~~v 268 (325)
T KOG0649|consen 202 LLRPDWGKWIGAL---AVNEDWLVCGG-GPKLSLWHLRSSE-STCVF-PIP---ARVHLVDFVDD----CVLIGGEGNHV 268 (325)
T ss_pred hcCcccCceeEEE---eccCceEEecC-CCceeEEeccCCC-ceEEE-ecc---cceeEeeeecc----eEEEeccccce
Confidence 33446666 33567888775 4579999999988 56666 343 67888888654 88888888899
Q ss_pred EEEECCCCccceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 000700 1249 QFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1249 ~IWDlr~~~~~v~tl~~h~~~Vtsla~spd-g~~LasgS~Dg~I~Iwd 1295 (1344)
.-|.+.. .....+.......++..|+-. -+++..++....+.|+.
T Consensus 269 ~~~~l~G--vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTLNG--VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeecc--EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 9998873 333344433334444444322 22444445555565553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=141.69 Aligned_cols=228 Identities=17% Similarity=0.291 Sum_probs=176.7
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEE
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~V 1157 (1344)
.|..++| .|||..|+.+..+ .+.+||..+ |... +++++|...|.+ ++|+.+|..+++|+.|+.|.+
T Consensus 14 ci~d~af--kPDGsqL~lAAg~-rlliyD~nd--G~ll-----qtLKgHKDtVyc----VAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSD--GTLL-----QPLKGHKDTVYC----VAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEE--CCCCceEEEecCC-EEEEEeCCC--cccc-----cccccccceEEE----EEEccCCceeccCCCceeEEE
Confidence 7899999 7899988887655 688999865 3322 568999999998 999999999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000700 1158 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1237 (1344)
Q Consensus 1158 WDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~ 1237 (1344)
|.-.-+. .++-.++..|.|| .++|-...+++++-+ ..-+|...... +...+. ...+.+++|..+ |.
T Consensus 80 W~~klEG----~LkYSH~D~IQCM-sFNP~~h~LasCsLs-dFglWS~~qK~--V~K~ks----s~R~~~CsWtnD--Gq 145 (1081)
T KOG1538|consen 80 WTSKLEG----ILKYSHNDAIQCM-SFNPITHQLASCSLS-DFGLWSPEQKS--VSKHKS----SSRIICCSWTND--GQ 145 (1081)
T ss_pred ecccccc----eeeeccCCeeeEe-ecCchHHHhhhcchh-hccccChhhhh--HHhhhh----heeEEEeeecCC--Cc
Confidence 9876544 3333334449999 777888888887654 46688765443 222211 267889999998 99
Q ss_pred EEEEEECCCcEEEEECCCCccceEEEe---cCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCceEEEEeccCC
Q 000700 1238 KIVSASQAGDIQFLDIRNHKDAYLTID---AHRGSLSALAVHRHA-----PIIASGSAKQLIKVFSLEGEQLGTIRYHHP 1309 (1344)
Q Consensus 1238 ~Lasgs~DG~I~IWDlr~~~~~v~tl~---~h~~~Vtsla~spdg-----~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~ 1309 (1344)
+++.|-.||+|.+-+-.. ++...++ +.+.+|++++|+|.. ..++......++.+|.++|+.+..-+. -.
T Consensus 146 ylalG~~nGTIsiRNk~g--Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~-L~ 222 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNKNG--EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA-LN 222 (1081)
T ss_pred EEEEeccCceEEeecCCC--CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc-CC
Confidence 999999999999986543 3333333 357799999999963 388999999999999999998875443 22
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1310 SFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1310 ~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
-...|+.+.++|.++..||.|+.+++|
T Consensus 223 -------FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 223 -------FDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred -------CCchhheeccCCcEEEEccCCCceEEE
Confidence 245789999999999999999999887
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=138.37 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=147.0
Q ss_pred EEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000700 1080 SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1159 (1344)
Q Consensus 1080 tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWD 1159 (1344)
..++| ..+|..|++|+.||++|||+... -... .....|...|.+ ++|++++..|++.|.| ..+||+
T Consensus 148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps--~~t~-----l~e~~~~~eV~D----L~FS~dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAF--NGDGSKLATGGTDGTLRVWEWPS--MLTI-----LEEIAHHAEVKD----LDFSPDGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEE--cCCCCEeeeccccceEEEEecCc--chhh-----hhhHhhcCcccc----ceeCCCCcEEEEecCC-ceEEEE
Confidence 56788 68999999999999999999644 1111 235678899999 9999999999999999 899999
Q ss_pred CCCCceeeeeecCC-CCCCeeEEEEEcCCC---CE--EEEEECCCeEEEEECCCCCe--eeEeecCCCCCCCCeEEEEEe
Q 000700 1160 LEKEQQMVNPIPSS-SDCSISALTASQVHG---GQ--LAAGFVDGSVRLYDVRTPDM--LVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1160 l~~~~~~v~~i~~~-~~~~VtsL~~~s~dg---~~--L~sGs~DGsVrIwDlr~~~~--~v~~~~~~~~h~~~I~sva~s 1231 (1344)
.+++. ++...... .+.....+ -+..++ .+ ++.-..-|.|+.||+..... ..+..+.. .....|++++++
T Consensus 214 ~~~g~-~~a~~t~~~k~~~~~~c-RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS 290 (398)
T KOG0771|consen 214 VNTGA-ALARKTPFSKDEMFSSC-RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVS 290 (398)
T ss_pred eccCc-hhhhcCCcccchhhhhc-eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEc
Confidence 99997 77666532 22223333 444444 23 33334456777777654332 11111111 123579999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1232 p~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
++ |++++.|+.||.|.|++..+.......-+.|...|+.+.|+|+.+++++.+.|..+.|..+..
T Consensus 291 ~d--Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DD--GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CC--CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99 999999999999999999987434444557999999999999999999999999988887543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=129.20 Aligned_cols=253 Identities=13% Similarity=0.236 Sum_probs=176.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--------C--------CcEEEEeeCCCCCCCCeEEEEEEeeCCCC
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYE--------E--------DTLLNSFDNHDFPDKGISKLCLVNELDVS 1091 (1344)
Q Consensus 1028 ~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~--------t--------g~~l~~~~~h~~~~~~ItsL~f~ns~d~~ 1091 (1344)
..|...|+++.|+|+|+.||+|+++|.|.+|... + -...+.+.+|. ..|..++| ++++.
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~---~diydL~W--s~d~~ 136 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR---DDIYDLAW--SPDSN 136 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc---cchhhhhc--cCCCc
Confidence 3466789999999999999999999999999765 2 12344566787 89999999 78999
Q ss_pred EEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec
Q 000700 1092 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP 1171 (1344)
Q Consensus 1092 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~ 1171 (1344)
++++|+.|..+++||+.. +... ..+.+|..-+.. ++|.|-+.++++-+.|...+++.+.... .+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~--G~l~-----~~~~dh~~yvqg----vawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~ 204 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHA--GQLL-----AILDDHEHYVQG----VAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHG 204 (434)
T ss_pred eeeeeeccceEEEEEecc--ceeE-----eeccccccccce----eecchhhhhhhhhccCcccceeeeeeee-eeeeee
Confidence 999999999999999966 4433 337889888888 9999999999998888877777766544 222211
Q ss_pred ---------CCCCCCeeEE------------EEEcCCCCEEEEEEC----CC-----eEEEEECCCCCeeeEeecCCCCC
Q 000700 1172 ---------SSSDCSISAL------------TASQVHGGQLAAGFV----DG-----SVRLYDVRTPDMLVCSTRPHTQQ 1221 (1344)
Q Consensus 1172 ---------~~~~~~VtsL------------~~~s~dg~~L~sGs~----DG-----sVrIwDlr~~~~~v~~~~~~~~h 1221 (1344)
.+....++.| ..+.|+|.++++... +| ..++|+...-+.....+...
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--- 281 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--- 281 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---
Confidence 1112223333 034578888887542 22 23555544333233222111
Q ss_pred CCCeEEEEEecC---------C-------CCCEEEEEECCCcEEEEECCCCccceEEEe-cCCCCeEEEEEcCCCCEEEE
Q 000700 1222 VERVVGISFQPG---------L-------DPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1222 ~~~I~sva~sp~---------~-------~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~h~~~Vtsla~spdg~~Las 1284 (1344)
......+.++|- . -+-.++.++. ..|.+||..+. .++.... .|-..|+.++|+++|.+++.
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~-~P~~~v~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTL-EPLAVVDNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccc-cceEEEeeeeeeeecceeecCCCcEEEE
Confidence 234444444432 0 0334556655 58999999987 5655443 57889999999999999999
Q ss_pred EeCCCeEEEEeCCCceEE
Q 000700 1285 GSAKQLIKVFSLEGEQLG 1302 (1344)
Q Consensus 1285 gS~Dg~I~Iwd~~g~~l~ 1302 (1344)
.|.||...+-.+++..+.
T Consensus 360 SS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eccCCceEEEEEcchhcc
Confidence 999999888877665555
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-09 Score=118.53 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=158.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEECC------CeEEEE
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCN------GNIRIW 1105 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~D------G~IrIW 1105 (1344)
....++|++|...+++|. |...+||+.+.-+....-+-+. .+-.+..|-| -.++|+ +||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~-~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFID-GGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhcccc-CchhhhhHhh----hhceEEEecCCCCCCCCCceEEEE
Confidence 455699999999999998 5558999987533322222121 1134445555 234443 44433 479999
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC-CCCeeEEEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS-DCSISALTAS 1184 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~-~~~VtsL~~~ 1184 (1344)
|... ...... .....+|.+ +... ...+++.- .+.|+||.....-+.++.+.... ...+.++ ..
T Consensus 81 DD~k--~~~i~e------l~f~~~I~~----V~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~-~~ 144 (346)
T KOG2111|consen 81 DDLK--ERCIIE------LSFNSEIKA----VKLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSL-CP 144 (346)
T ss_pred eccc--CcEEEE------EEeccceee----EEEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEee-cC
Confidence 9543 222111 123455665 4543 44555544 46799999884432566665543 2224444 22
Q ss_pred cCCCCEEEE-EECCCeEEEEECCCCCee-eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-EEEEECCCCccceE
Q 000700 1185 QVHGGQLAA-GFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1185 s~dg~~L~s-Gs~DGsVrIwDlr~~~~~-v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-I~IWDlr~~~~~v~ 1261 (1344)
..+..+|+. |..-|.|+|-|+...+.- -. ....|.+.|.+++.+-+ |..+||+|..|+ |+|||..++ ..+.
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~---~I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g-~~l~ 218 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPS---IINAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG-TLLQ 218 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCce---EEEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-cEee
Confidence 223334443 666799999999876531 12 23367799999999998 999999999998 899999998 7888
Q ss_pred EEecC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1262 TIDAH--RGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1262 tl~~h--~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
+++-. ...|.+++|+|++.+||++|..|+++||.+.+
T Consensus 219 E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 87732 45799999999999999999999999998643
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=126.22 Aligned_cols=272 Identities=13% Similarity=0.160 Sum_probs=183.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EECCCeEEEEeccCCCCce
Q 000700 1036 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1036 ~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~IrIWdl~~~~~~~ 1114 (1344)
-.+|||+|+++|+.+ +..+.|-|.++-+..+.|..-. .|.-+.| ..|..++++ ...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-~yrlviRd~~tlq~~qlf~cld----ki~yieW--~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-RYRLVIRDSETLQLHQLFLCLD----KIVYIEW--KADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-eeEEEEeccchhhHHHHHHHHH----Hhhheee--eccceeeeeeeeccceEEEEEeecceeEE
Confidence 467999999999998 4588888988777666555433 6778888 556655554 5678899999996522111
Q ss_pred eEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEE
Q 000700 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1193 (1344)
Q Consensus 1115 ~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~s 1193 (1344)
.+.....++.+ ..|+|+|.+++..+ .+-.|.||.+.+.+ ... ++ +....+..+ .+.++|++.+.
T Consensus 86 -------kIdeg~agls~----~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~-~~-~pK~~~kg~-~f~~dg~f~ai 150 (447)
T KOG4497|consen 86 -------KIDEGQAGLSS----ISWSPDGRHILLTSEFDLRITVWSLNTQK-GYL-LP-HPKTNVKGY-AFHPDGQFCAI 150 (447)
T ss_pred -------EeccCCCccee----eeECCCcceEeeeecceeEEEEEEeccce-eEE-ec-ccccCceeE-EECCCCceeee
Confidence 14444555555 89999998877765 68889999999877 332 22 222335666 66788887766
Q ss_pred EEC------------------------------------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000700 1194 GFV------------------------------------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1237 (1344)
Q Consensus 1194 Gs~------------------------------------DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~ 1237 (1344)
.+. +..+-+||---.- .+..+ ...-.+..++|+|. ++
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-kv~aY----e~~lG~k~v~wsP~--~q 223 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-KVYAY----ERGLGLKFVEWSPC--NQ 223 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-eeeee----eeccceeEEEeccc--cc
Confidence 542 1224444432221 11111 11256889999999 99
Q ss_pred EEEEEECCCcEEEEECCCCc------------------------c-----------------------------------
Q 000700 1238 KIVSASQAGDIQFLDIRNHK------------------------D----------------------------------- 1258 (1344)
Q Consensus 1238 ~Lasgs~DG~I~IWDlr~~~------------------------~----------------------------------- 1258 (1344)
+|++|+.|+.+++.+--+.+ +
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 99999999999886532110 0
Q ss_pred ceEEEe------cCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCE
Q 000700 1259 AYLTID------AHRGSLSALAVHRHAPIIASGSAK--QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1330 (1344)
Q Consensus 1259 ~v~tl~------~h~~~Vtsla~spdg~~LasgS~D--g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~ 1330 (1344)
.+..++ .....+.-++|++|..++||-.+. +.+-+||+....+..+-. . ..+|....|+|....
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Q-------k~piraf~WdP~~pr 375 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-Q-------KHPIRAFEWDPGRPR 375 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-h-------ccceeEEEeCCCCce
Confidence 000000 012246679999999999987543 578999988766655443 2 268999999999998
Q ss_pred EEEEECCCeEEEcC
Q 000700 1331 LAAGSADACVSIHS 1344 (1344)
Q Consensus 1331 Lasgs~Dg~I~IWd 1344 (1344)
|+.+....++.+|.
T Consensus 376 L~vctg~srLY~W~ 389 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWA 389 (447)
T ss_pred EEEEcCCceEEEEc
Confidence 88888777888884
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=127.56 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=153.0
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEe---eCCC----CEEEEEEC
Q 000700 1026 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDV----SLLLVASC 1098 (1344)
Q Consensus 1026 Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~n---s~d~----~~L~tgs~ 1098 (1344)
|+..+...|+.+.-.|. ..|.+-+.|+.+.+|++..+..+.. |. -.++++.|+. .+.+ ..++.-+.
T Consensus 51 ~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~S---i~~nslgFCrfSl~~~~k~~eqll~yp~r 123 (323)
T KOG0322|consen 51 IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HS---IVVNSLGFCRFSLVKKPKNSEQLLEYPSR 123 (323)
T ss_pred hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---ee---eeccccccccceeccCCCcchhheecCCc
Confidence 44334466888887777 5677888899999999986544332 11 1222333321 0111 11111110
Q ss_pred CC-eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecC-C-C-eEEEEECCCeEEEEECCCCceeeeee----
Q 000700 1099 NG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-S-G-YLYASGEVSSIMLWDLEKEQQMVNPI---- 1170 (1344)
Q Consensus 1099 DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~-~-~Llagg~Dg~I~VWDl~~~~~~v~~i---- 1170 (1344)
.. .+++-|. +....+ +...+....-....++..|... + . .+++|-.+|.+.+||+.++. .+..+
T Consensus 124 gsde~h~~D~----g~~tqv---~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~-~~~~~~~~~ 195 (323)
T KOG0322|consen 124 GSDETHKQDG----GDTTQV---QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD-KIIQLPQSS 195 (323)
T ss_pred ccchhhhhcc----Ccccee---EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc-eeecccccc
Confidence 00 0111111 111001 1111111111222223444322 2 2 34455689999999999985 33333
Q ss_pred ------cCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000700 1171 ------PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1244 (1344)
Q Consensus 1171 ------~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~ 1244 (1344)
..|.. +|.++.+. +.-+.=++|+.+..+..|.+.........-..++-..-.|..+.+.|+ ++.+++++.
T Consensus 196 kv~~~~ash~q-pvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD--~KIlATAGW 271 (323)
T KOG0322|consen 196 KVESPNASHKQ-PVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD--GKILATAGW 271 (323)
T ss_pred ccccchhhccC-cceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC--CcEEeeccc
Confidence 33433 58998544 444455677788888899887442111111111112356889999999 999999999
Q ss_pred CCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1245 AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1245 DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
||.|+||..++. .++..++.|.+.|.+++|+|+..++|++|.|+.|.+|++
T Consensus 272 D~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 272 DHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999998 899999999999999999999999999999999999984
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=120.21 Aligned_cols=236 Identities=19% Similarity=0.335 Sum_probs=159.9
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEE-EEECC----
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLY-ASGEV---- 1152 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Ll-agg~D---- 1152 (1344)
...+++| .+|...+++|.++| .|||+..--+.... +...+..-.+.. +-| ..++++ +||.+
T Consensus 7 ~~lsvs~--NQD~ScFava~~~G-friyn~~P~ke~~~-----r~~~~~G~~~ve----MLf--R~N~laLVGGg~~pky 72 (346)
T KOG2111|consen 7 KTLSVSF--NQDHSCFAVATDTG-FRIYNCDPFKESAS-----RQFIDGGFKIVE----MLF--RSNYLALVGGGSRPKY 72 (346)
T ss_pred ceeEEEE--ccCCceEEEEecCc-eEEEecCchhhhhh-----hccccCchhhhh----Hhh--hhceEEEecCCCCCCC
Confidence 3455788 78889999988776 89998754111110 001111111111 111 234443 44433
Q ss_pred --CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000700 1153 --SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1153 --g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~ 1230 (1344)
..|.|||-..+. ++.++.-. ++|.++ ... .+.+++.- .+.|.+|.....-+..+.+.+.... ..+. ++
T Consensus 73 ~pNkviIWDD~k~~-~i~el~f~--~~I~~V-~l~--r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC--~~ 142 (346)
T KOG2111|consen 73 PPNKVIIWDDLKER-CIIELSFN--SEIKAV-KLR--RDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLC--SL 142 (346)
T ss_pred CCceEEEEecccCc-EEEEEEec--cceeeE-EEc--CCeEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceE--ee
Confidence 479999977777 78777763 348998 443 44565554 6789999988554455555444222 2233 33
Q ss_pred ecCCCCCEEEE-EECCCcEEEEECCCCcc-ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEe-CCCceEEEEec
Q 000700 1231 QPGLDPAKIVS-ASQAGDIQFLDIRNHKD-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQL-IKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1231 sp~~~g~~Las-gs~DG~I~IWDlr~~~~-~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~-I~Iwd-~~g~~l~~l~~ 1306 (1344)
.|..+..+||. |-.-|.|+|-|+..... +-..+.+|.+.|.|++.+-+|.++||+|..|+ |+||| .+|+.+..++-
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 44422445554 34569999999987622 34788999999999999999999999999998 68999 68999998875
Q ss_pred cCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1307 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1307 ~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
|.....|.+++|+|++.+||++|..|+|.||
T Consensus 223 ------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 223 ------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred ------CCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 1234689999999999999999999999997
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=121.59 Aligned_cols=293 Identities=18% Similarity=0.223 Sum_probs=180.7
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-CCEEEEEECCCe
Q 000700 1023 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-VSLLLVASCNGN 1101 (1344)
Q Consensus 1023 i~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d-~~~L~tgs~DG~ 1101 (1344)
+..|.. ..+..++||+.-..+|++..|..|+|||-.+ +....++... ...|++++| .|. +..|++|+.. -
T Consensus 93 vt~ws~---~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--Qrnvtclaw--RPlsaselavgCr~-g 163 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--QRNVTCLAW--RPLSASELAVGCRA-G 163 (445)
T ss_pred hhhhhh---cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--hcceeEEEe--ccCCcceeeeeecc-e
Confidence 344643 3688999999777889999999999999775 4444444322 368999999 444 4466666655 5
Q ss_pred EEEEeccCCCCceeEE---e----eeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC
Q 000700 1102 IRIWKDYDQKDKQKLV---T----AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS 1173 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lv---s----~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~ 1173 (1344)
|.||...........+ + ..-..++| ..|++ +.|++++..+++++ .|..|+|||..++. ++.-....
T Consensus 164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVts----mqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~pL~~~g 237 (445)
T KOG2139|consen 164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTS----MQWNEDGTILVTASFGSSSIMIWDPDTGQ-KIPLIPKG 237 (445)
T ss_pred eEEEEcCcccccccccccccccchhheeCCCC-ceeeE----EEEcCCCCEEeecccCcceEEEEcCCCCC-cccccccC
Confidence 8999874311111100 0 00112333 34555 99999999999987 67899999999998 65554333
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEEC
Q 000700 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDI 1253 (1344)
Q Consensus 1174 ~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDl 1253 (1344)
-++ ++-+ .++|+|++|.++.-|+..++|.........+ +... .+.|...+|+|. |..|+..+. |.-++|.+
T Consensus 238 lgg-~slL-kwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lg---sgrvqtacWspc--GsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 238 LGG-FSLL-KWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILG---SGRVQTACWSPC--GSFLLFACS-GSPRLYSL 308 (445)
T ss_pred CCc-eeeE-EEcCCCCEEEEecccceeeeehhcccceecc-eecc---CCceeeeeecCC--CCEEEEEEc-CCceEEEE
Confidence 343 7777 7899999999999999999996543321111 1122 258999999999 665544332 33344443
Q ss_pred CCCccc--------------eEEE-----ecC----CCCeEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCceEE
Q 000700 1254 RNHKDA--------------YLTI-----DAH----RGSLSALAVHRHAPIIASGSAKQ--------LIKVFSLEGEQLG 1302 (1344)
Q Consensus 1254 r~~~~~--------------v~tl-----~~h----~~~Vtsla~spdg~~LasgS~Dg--------~I~Iwd~~g~~l~ 1302 (1344)
...+++ +..+ ... .+++.+++|.|.|.+||+.-..+ .|.+||.......
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 321110 0000 111 35788999999999999875433 4667886555444
Q ss_pred EEeccCCccccccCCCeEEEEEecC---CCEEEEEECCCeEEEc
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPY---QVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspd---g~~Lasgs~Dg~I~IW 1343 (1344)
.+.+ - ++.++ .....++|+|. +.+|..+=+.|.+.-|
T Consensus 389 els~-c-g~i~g--e~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 389 ELSY-C-GMIGG--EYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred EEEe-c-ccccC--CCCceEEeeecccCCcEEEEEeccCceEee
Confidence 4442 1 12111 12344566553 3455555445665544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-11 Score=136.90 Aligned_cols=218 Identities=16% Similarity=0.191 Sum_probs=156.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEee-CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~-~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.|.+.|.|+.|+.+|.+|++|++|-.+.|||.-..+.+..+. +|. ..|.+++|.+..+..++++|..|..|+++|+
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc---cceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 467899999999999999999999999999999888888775 566 8999999998888999999999999999999
Q ss_pred cCCCCcee---EEeeeecccCCCCCccccceEEEEecCC-CeEEEEECCCeEEEEECCCCceeeeeecCC------C--C
Q 000700 1108 YDQKDKQK---LVTAFSSIQGHKPGVRCSNVVVDWQQQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSS------S--D 1175 (1344)
Q Consensus 1108 ~~~~~~~~---lvs~~~~l~~h~~~V~s~~~~v~ws~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~------~--~ 1175 (1344)
...++... .....+.+..|...|.. ++-.|++ ..+.+++.||+|+-+|++....|-.....+ . -
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKr----ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKR----IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhh----eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 75322211 12222446678888887 4555666 567888999999999998744111111111 0 0
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-----------------eeEeecCCCCCC-----------CCeEE
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-----------------LVCSTRPHTQQV-----------ERVVG 1227 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~-----------------~v~~~~~~~~h~-----------~~I~s 1227 (1344)
-...|++..+.+..+|++|+.|-..++||.|...+ .+..+. .+|. ..++-
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeEE
Confidence 12466656666788999999999999999652110 111110 0111 12567
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEECCCCc
Q 000700 1228 ISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
+.|+|+ |..|++.-..-.|+++|+....
T Consensus 279 vtfnpN--GtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 279 VTFNPN--GTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEECCC--CcEEEEeeCCeEEEEEeecCCC
Confidence 888998 7777666656689999998763
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=143.46 Aligned_cols=275 Identities=12% Similarity=0.115 Sum_probs=192.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~-~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
+..+.++-. ++|.+|. .-.|.+||+.++..+..+.....- ...+.... .-.+.+++++..-+.+..=+...
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~---~l~~~~~v~~~~~~~v~~~~~~~-- 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKV---KLLSGKIVTCAKSDEVYVKEASN-- 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccc---eeccceEEEEEeecceeecchhh--
Confidence 344444433 6777665 678999999988666554322100 00000000 01345666665544443322211
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEE--EEEcCCCC
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL--TASQVHGG 1189 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL--~~~s~dg~ 1189 (1344)
+. +......+.. ..+.-.+..++.+..++.+.+||...+. ....+.........++ .-++.+.-
T Consensus 81 ~~---------~~~~s~wi~g----~~l~~e~k~i~l~~~~ns~~i~d~~~~~-~~~~i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 81 QI---------IERFSDWIFG----AKLFEENKKIALVTSRNSLLIRDSKNSS-VLSKIQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred hh---------hhhccccccc----cchhhhcceEEEEEcCceEEEEecccCc-eehhcCCCceEEEEeEEEEeccCcEE
Confidence 11 1111222222 2222357888888999999999998877 6666554433211111 12455666
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGS 1269 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~ 1269 (1344)
++++|+.-|.|.+|+....+... ...+|.+.|.++.++-+ |+++++.|+|.++++|++.+......+.-+|...
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~----~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI----RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEEeccccccEEEEeccccCCcc----eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCcccccccce
Confidence 89999999999999998544333 24588999999999998 9999999999999999999884444466789999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1270 LSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+.+.|+|+ .+++++.|.+.++|+.++..+..+.. |. ...|+.++.++....++|++.||.+++|+
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~-h~------g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDE-HS------GKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEecccceehhhhh-hh------hcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999998 99999999999999999999998888 75 47899999999999999999999999996
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-10 Score=123.72 Aligned_cols=209 Identities=11% Similarity=0.121 Sum_probs=161.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
.+|++.+| +.|+..++++-.+..|.||.....+ -.+. .+++..|...|++ ++|.+..+.|++++.|+.-+
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~-~w~~---~htls~Hd~~vtg----vdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGAD-LWEP---AHTLSEHDKIVTG----VDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCCC-Ccee---ceehhhhCcceeE----EeecCCCCceeEccCCCCcc
Confidence 68999999 7899999999999999999985521 1233 3678999999988 99999999999999999999
Q ss_pred EEECCCCc--eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1157 LWDLEKEQ--QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1157 VWDl~~~~--~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
||....+. .+.-.+..+.. .++++ -++|.++.|++|+....|.||-......-......-+.+.+.|++++|+|+
T Consensus 81 Vw~~~~~~~WkptlvLlRiNr-AAt~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn- 157 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINR-AATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN- 157 (361)
T ss_pred ccccCCCCeeccceeEEEecc-ceeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-
Confidence 99984332 12333333434 38999 678999999999999999999877654221111122245589999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCC-----------------ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNH-----------------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1235 ~g~~Lasgs~DG~I~IWDlr~~-----------------~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
+-.++.|+.|+..++|..--. ++.+.++....+.+..+.|+|+|..|+-.+.|+.+.+-|..
T Consensus 158 -nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 158 -NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred -cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 999999999999999864210 02334444556789999999999999999999999999965
Q ss_pred Cc
Q 000700 1298 GE 1299 (1344)
Q Consensus 1298 g~ 1299 (1344)
+.
T Consensus 237 ~p 238 (361)
T KOG1523|consen 237 GP 238 (361)
T ss_pred CC
Confidence 54
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-10 Score=121.56 Aligned_cols=271 Identities=17% Similarity=0.188 Sum_probs=179.1
Q ss_pred CCcEEEEECCCCcEEE--EeeCCCCCCCCeEEEEEEee-CCCC-EEEEEECCCeEEEEeccCCCCceeEEeeeecccCCC
Q 000700 1052 NERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNE-LDVS-LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHK 1127 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~l~--~~~~h~~~~~~ItsL~f~ns-~d~~-~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~ 1127 (1344)
.|.+.+|++++.+... +++... .+.+..|.|.-. .++. .++-+...|.|.++.......... ++.+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~d--ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~k 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTD--TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKK 118 (339)
T ss_pred ccceEEEeecccccCccceeeeec--ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhh
Confidence 4678889887654433 222111 146777888432 2444 566777889999998855222211 12233322
Q ss_pred CCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000700 1128 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVR 1206 (1344)
Q Consensus 1128 ~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr 1206 (1344)
..+. ..++++|+..+..++++-.+|.+.+-+..... ..++.++.|.-. .....+...+.+++.+|+.||.+..||+|
T Consensus 119 i~~~-~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 119 ISVV-EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhe-eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEec
Confidence 2222 35678999999999999889988855544333 134467777554 56665666778999999999999999999
Q ss_pred CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCC--CEEEE
Q 000700 1207 TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA--PIIAS 1284 (1344)
Q Consensus 1207 ~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg--~~Las 1284 (1344)
.++ ...++..+-|...|.+|.-+|. .+.++++|+.|-.|++||.|+.++++..-.. .+.|+.+.+||.- .++++
T Consensus 197 ~p~--~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~ 272 (339)
T KOG0280|consen 197 IPK--TFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAA 272 (339)
T ss_pred CCc--ceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHH
Confidence 554 3344455567899999999887 6899999999999999999977677765443 4789999999953 35555
Q ss_pred EeCCCeEEEEeCCC---c---eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCeEE-Ec
Q 000700 1285 GSAKQLIKVFSLEG---E---QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVS-IH 1343 (1344)
Q Consensus 1285 gS~Dg~I~Iwd~~g---~---~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~-Dg~I~-IW 1343 (1344)
+-.+| .+|-+.+. + .+...+. |. +-+..-.|......|||++. |..++ +|
T Consensus 273 CMh~G-~ki~~~~~~~~e~~~~~~s~~~-hd-------Sl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 273 CMHNG-AKILDSSDKVLEFQIVLPSDKI-HD-------SLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred HHhcC-ceEEEecccccchheeeecccc-cc-------ceeeccccccccceeeeeeccccceeeee
Confidence 54444 56666432 2 2222233 32 44555556444567888765 77755 66
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-09 Score=126.50 Aligned_cols=281 Identities=11% Similarity=0.091 Sum_probs=171.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE-CCCeEEEEeccCCCCc
Q 000700 1035 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1035 ~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl~~~~~~ 1113 (1344)
..+.|+|||+++.+++.||.|.++|+.+++.+.+++... ...++++ ++||++++++. ..+.+.|+|..+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~t---- 109 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAV--SPDGKYVYVANYEPGTVSVIDAET---- 109 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE----TTTEEEEEEEETTEEEEEETTT----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEE--cCCCCEEEEEecCCCceeEecccc----
Confidence 457799999999999999999999999999999998766 5678888 78999999875 689999999866
Q ss_pred eeEEeeeec--cc--CCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceee--eeecCCCCCCeeEEEEEcC
Q 000700 1114 QKLVTAFSS--IQ--GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1114 ~~lvs~~~~--l~--~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v--~~i~~~~~~~VtsL~~~s~ 1186 (1344)
.+.+..+.. .. .....+.. +.-++....+++.- +.+.|-+-|..... .. ..+.. +...... .+++
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~a----Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~~--g~~~~D~-~~dp 181 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAA----IVASPGRPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIKV--GRFPHDG-GFDP 181 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEE----EEE-SSSSEEEEEETTTTEEEEEETTTSS-CEEEEEEE----TTEEEE-EE-T
T ss_pred ccceeecccccccccccCCCcee----EEecCCCCEEEEEEccCCeEEEEEecccc-ccceeeecc--ccccccc-ccCc
Confidence 222211111 11 11223333 44456677666665 45888888877654 33 23332 2235666 7788
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecC--------CCCCEEEEEECCCcEEEEECCCC
Q 000700 1187 HGGQLAAG-FVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPG--------LDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1187 dg~~L~sG-s~DGsVrIwDlr~~~~~v~~~~-~~~~h~~~I~sva~sp~--------~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
++++++++ ..+..|-++|..+.+ .+..+. ....|..++..+ .||. ..+...++.-..+.+.+||....
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred ccceeeecccccceeEEEeeccce-EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 99887664 567899999999887 333332 223344555543 2443 01222222222345667888887
Q ss_pred ccceEEEecCCCCeEEEEEcCCCCEEEEE----eCCCeEEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEE
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRHAPIIASG----SAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1331 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spdg~~Lasg----S~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~L 1331 (1344)
+.++++....++ .-+..||+++++.+. ...+.|.|+|... +.+.++.. .. ...+..+.|+++|+.+
T Consensus 260 -kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~------~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 260 -KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GP------GKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HH------T--EEEEEE-TTSSEE
T ss_pred -eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cC------CCcEeccEECCCCCEE
Confidence 889999887666 778899999999887 4458999999654 44555543 11 1358999999999866
Q ss_pred EEEEC--CCeEEEcC
Q 000700 1332 AAGSA--DACVSIHS 1344 (1344)
Q Consensus 1332 asgs~--Dg~I~IWd 1344 (1344)
..+.. ++.|.|||
T Consensus 331 ~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYD 345 (369)
T ss_dssp EEEEE--TTEEEEEE
T ss_pred EEEEecCCCEEEEEE
Confidence 55544 44799886
|
... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=133.33 Aligned_cols=172 Identities=17% Similarity=0.217 Sum_probs=133.3
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
...++.++.||.+.+.+-. +. ....+..|... |.+- -|+++|.-+++.++||.|++|.....- ..+. ....
T Consensus 75 ~d~~~i~s~DGkf~il~k~-~r-VE~sv~AH~~A-~~~g-RW~~dGtgLlt~GEDG~iKiWSrsGML--RStl---~Q~~ 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS-AR-VERSISAHAAA-ISSG-RWSPDGAGLLTAGEDGVIKIWSRSGML--RSTV---VQNE 145 (737)
T ss_pred cceEEEEcCCceEEEeccc-ch-hhhhhhhhhhh-hhhc-ccCCCCceeeeecCCceEEEEeccchH--HHHH---hhcC
Confidence 4578888999999887643 33 35566677665 7776 688999999999999999999854321 1111 1224
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1302 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~ 1302 (1344)
..|.|++|.|+ ....+++. .|.+.|=-+... ..+..+++|++-|.+++|++...++++|++|-..+|||-.|..+.
T Consensus 146 ~~v~c~~W~p~-S~~vl~c~--g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf 221 (737)
T KOG1524|consen 146 ESIRCARWAPN-SNSIVFCQ--GGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF 221 (737)
T ss_pred ceeEEEEECCC-CCceEEec--CCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc
Confidence 78999999999 44455544 356777677766 567789999999999999999999999999999999999998887
Q ss_pred EEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.-.. |+ .+|++++|.|+ ..++.++.
T Consensus 222 ~S~~-~e-------y~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 222 TSAA-EE-------YAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred cCCh-hc-------cceeeeeeccc-cceeeeee
Confidence 7766 65 89999999999 66666653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=134.29 Aligned_cols=215 Identities=12% Similarity=0.082 Sum_probs=146.9
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE-CCCeEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIW 1105 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~d---g~I~VWd~~tg~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIW 1105 (1344)
..+....|+|||+.|+.++.+ ..|.+||+.+++. +..+.++ ...++| ++||+.|+.++ .+|.+.||
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~~~~w--SPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NGAPAF--SPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cCceeE--CCCCCEEEEEEecCCcEEEE
Confidence 468899999999999987643 3699999988754 3333333 335788 78999888765 68887777
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
.+....+... .+..+...+.. ..|++++..|+.++ .+|...||++.........+ .+.. .+. .+
T Consensus 276 ~~d~~~~~~~------~lt~~~~~~~~----~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~-~~ 340 (429)
T PRK01742 276 VMGANGGTPS------QLTSGAGNNTE----PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSA-QI 340 (429)
T ss_pred EEECCCCCeE------eeccCCCCcCC----EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCc-cC
Confidence 5543223322 23444444444 89999999887765 56788888765432022223 2222 334 57
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC-CccceEEE
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN-HKDAYLTI 1263 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~-~~~~v~tl 1263 (1344)
+++|+.++.++.++ +.+||+.+++. ....... ...++.|+|+ |+.|+.++.+|.+.+|++.. .+.....+
T Consensus 341 SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~lt~~~-----~~~~~~~sPd--G~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 341 SADGKTLVMINGDN-VVKQDLTSGST-EVLSSTF-----LDESPSISPN--GIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCCCCEEEEEcCCC-EEEEECCCCCe-EEecCCC-----CCCCceECCC--CCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 89999998888766 55599988762 2221111 2346789999 99999999999988887632 23678888
Q ss_pred ecCCCCeEEEEEcCC
Q 000700 1264 DAHRGSLSALAVHRH 1278 (1344)
Q Consensus 1264 ~~h~~~Vtsla~spd 1278 (1344)
..|.+.+...+|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888999999984
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=133.53 Aligned_cols=168 Identities=20% Similarity=0.387 Sum_probs=133.3
Q ss_pred cccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC-CEEEEEECCCeE
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-GQLAAGFVDGSV 1200 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg-~~L~sGs~DGsV 1200 (1344)
.+.||.+.|++ ++|+.+|..|++|++|-.+.|||.-..+ .+..+..++...|-++.+.+..+ .++++|..|..|
T Consensus 45 eL~GH~GCVN~----LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 45 ELTGHTGCVNC----LEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhccccceecc----eeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 47899999999 9999999999999999999999999888 88888877666799998876554 567889999999
Q ss_pred EEEECCCCC------eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEE---------ec
Q 000700 1201 RLYDVRTPD------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI---------DA 1265 (1344)
Q Consensus 1201 rIwDlr~~~------~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl---------~~ 1265 (1344)
++||+...+ .+......+..|...|..++..|+ +...+.+++.||+|+-+|+|....+-... ..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~-~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPN-GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCC-CCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999998422 122222344567899999999998 45889999999999999999742221111 11
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 000700 1266 HRGSLSALAVHRHAP-IIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd 1295 (1344)
.--...|++++|..+ +||.|+.|-..++||
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 123567999999766 889999999999999
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-11 Score=147.19 Aligned_cols=240 Identities=16% Similarity=0.270 Sum_probs=175.6
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC
Q 000700 1064 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1064 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~ 1143 (1344)
+.++.+.+|. ..|.|+.| ...|.++++|++|..|+||...+ +.. .....||...++. ++.+..+
T Consensus 181 k~ikrLlgH~---naVyca~f--Drtg~~Iitgsdd~lvKiwS~et--~~~-----lAs~rGhs~ditd----lavs~~n 244 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIF--DRTGRYIITGSDDRLVKIWSMET--ARC-----LASCRGHSGDITD----LAVSSNN 244 (1113)
T ss_pred HHHHHHHhhh---hheeeeee--ccccceEeecCccceeeeeeccc--hhh-----hccCCCCccccch----hccchhh
Confidence 4455677888 89999999 78999999999999999999755 221 2457899999998 6666667
Q ss_pred CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC-CCC
Q 000700 1144 GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT-QQV 1222 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~-~h~ 1222 (1344)
-.+++++.|..|++|-+..+. ++..+.+|.+. |+++ .++|-. +.+.||++++||.|-.. ....-+... ...
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~-pvsvLrghtga-vtai-afsP~~----sss~dgt~~~wd~r~~~-~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGA-PVSVLRGHTGA-VTAI-AFSPRA----SSSDDGTCRIWDARLEP-RIYVPRPLKFTEK 316 (1113)
T ss_pred hhhhhcccCceEEEEecCCCc-hHHHHhccccc-eeee-ccCccc----cCCCCCceEeccccccc-cccCCCCCCcccc
Confidence 778888999999999999999 99999999887 9999 555533 78899999999998221 121111111 112
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe-CCCce
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS-LEGEQ 1300 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd-g~~LasgS~Dg~I~Iwd-~~g~~ 1300 (1344)
.-+.++.+... +.-++||+.|+.-..|.+.... .+...+.-+..+.+ ..+.+++-.+..+++|+ .+|..
T Consensus 317 ~~~~s~~~~~~--~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 317 DLVDSILFENN--GDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred cceeeeecccc--ccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 45666667666 8899999999999888776331 11111111111112 13556666677889999 67777
Q ss_pred EEEEeccCCccccccCCCeEEEEEecCCCE-EEEEECCCeEEEcC
Q 000700 1301 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIHS 1344 (1344)
Q Consensus 1301 l~~l~~~h~~f~~~~~~~V~slafspdg~~-Lasgs~Dg~I~IWd 1344 (1344)
+..+.+ |. ..+..+.+||-+.. ..+++.||...|||
T Consensus 388 ~H~l~g-hs-------d~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 388 LHNLMG-HS-------DEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhhhcc-cc-------cceeeeeecCCCcHhhhhccCCCceEeee
Confidence 777766 55 78999999998854 45678899999997
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-09 Score=125.67 Aligned_cols=236 Identities=11% Similarity=0.098 Sum_probs=156.1
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC---CCeEEEEeccCCCCceeEEeeeecccCCCC
Q 000700 1052 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1128 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1128 (1344)
...|.+||.+.+.. ..+..+. ..+.+.+| ++||+.|+..+. +..|.+|++.. ++.+.+ ..+.++
T Consensus 178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~--G~~~~l---~~~~~~-- 244 (429)
T PRK03629 178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV---ASFPRH-- 244 (429)
T ss_pred ceeEEEEcCCCCCC-EEeecCC---CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCC--CCeEEc---cCCCCC--
Confidence 34788888875443 3344444 57889999 789998886542 35788999865 443333 112222
Q ss_pred CccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECC-CeEEE--
Q 000700 1129 GVRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-GSVRL-- 1202 (1344)
Q Consensus 1129 ~V~s~~~~v~ws~~~~~Llag-g~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~D-GsVrI-- 1202 (1344)
+.. ..|+|++..|+.. +.+| .|.+||+.++. .. .+..+.. .+... .++++|+.|+..+.+ |...+
T Consensus 245 -~~~----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~-~lt~~~~-~~~~~-~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 -NGA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IR-QVTDGRS-NNTEP-TWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -cCC----eEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EccCCCC-CcCce-EECCCCCEEEEEeCCCCCceEEE
Confidence 233 7899999988876 3344 59999998877 43 3433333 36666 678999988877754 44444
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEECCCCccceEEEecCCCCeEEEEEcCCC
Q 000700 1203 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1203 wDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D---G~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
+|+.+++ .. .+.. +........|+|+ |+.|+..+.+ ..|.+||+.++ . ...+... .......|+|||
T Consensus 316 ~d~~~g~-~~-~lt~---~~~~~~~~~~SpD--G~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 316 VNINGGA-PQ-RITW---EGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNG 385 (429)
T ss_pred EECCCCC-eE-Eeec---CCCCccCEEECCC--CCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCC
Confidence 4666554 22 2211 1234567889999 8888776543 35888999876 3 3334322 223467899999
Q ss_pred CEEEEEeCCCe---EEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1280 PIIASGSAKQL---IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1280 ~~LasgS~Dg~---I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
++|+.++.++. +.+++++|.....+.. |. +.+...+|+|-
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~-~~-------~~~~~p~Wsp~ 428 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 428 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCCeEECcc-CC-------CCcCCcccCCC
Confidence 99998887764 6778889988888877 55 67888888873
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-10 Score=128.26 Aligned_cols=253 Identities=15% Similarity=0.182 Sum_probs=164.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE-eeCCCCCCCCeEEEEE---EeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCL---VNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~-~~~h~~~~~~ItsL~f---~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
+....++-.|++|+..- ...+.+|++..+..+.. +..-..++...++-.| .-.+++--|+.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 33444444556666544 45688888774322211 1100011122233333 1124566788888889999888754
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEE-EECCCeEEEEECCCCc------------------------
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SGEVSSIMLWDLEKEQ------------------------ 1164 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla-gg~Dg~I~VWDl~~~~------------------------ 1164 (1344)
. ...++ +.+...-..+..+++.|-+.+..++. +-.+|.+.+||..-..
T Consensus 205 ~-~~skl------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk 277 (636)
T KOG2394|consen 205 F-EVSKL------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK 277 (636)
T ss_pred h-HHHHh------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence 1 11111 11111111223344899887665554 4689999999753211
Q ss_pred ---eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000700 1165 ---QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1241 (1344)
Q Consensus 1165 ---~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Las 1241 (1344)
.++..+....+ .|..+ ++++||++|++.+.||.+||||..+.+ +...++..- +...|++|+|| |++|++
T Consensus 278 ~~rNPv~~w~~~~g-~in~f-~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYF---GGLLCvcWSPD--GKyIvt 349 (636)
T KOG2394|consen 278 KTRNPVARWHIGEG-SINEF-AFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYF---GGLLCVCWSPD--GKYIVT 349 (636)
T ss_pred ccCCccceeEeccc-cccce-eEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhc---cceEEEEEcCC--ccEEEe
Confidence 01111222223 47778 677899999999999999999999877 555555543 78999999999 999999
Q ss_pred EECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCC-----------------------------------C-------
Q 000700 1242 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-----------------------------------A------- 1279 (1344)
Q Consensus 1242 gs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd-----------------------------------g------- 1279 (1344)
|+.|..|.||.+... ..+..-++|+..|+.++|.|. +
T Consensus 350 GGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~ 428 (636)
T KOG2394|consen 350 GGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFN 428 (636)
T ss_pred cCCcceEEEEEeccc-eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccc
Confidence 999999999999987 788889999999999999831 1
Q ss_pred ------CEEEEEeCCCeEEEEeCCCceEEE
Q 000700 1280 ------PIIASGSAKQLIKVFSLEGEQLGT 1303 (1344)
Q Consensus 1280 ------~~LasgS~Dg~I~Iwd~~g~~l~~ 1303 (1344)
-.|.+.+.|-.+.+||++...+..
T Consensus 429 ~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 429 RINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccceEEEeecccccceEEEEecchhhccc
Confidence 136677889999999987655544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=127.20 Aligned_cols=174 Identities=15% Similarity=0.202 Sum_probs=129.5
Q ss_pred cCCCeEEEEECCCeEEEEECCCCceeeeeec---CCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC----e---
Q 000700 1141 QQSGYLYASGEVSSIMLWDLEKEQQMVNPIP---SSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----M--- 1210 (1344)
Q Consensus 1141 ~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~---~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~----~--- 1210 (1344)
+.+-.+++|-..|.|.+.|..... ..+-+. ......|+++.|...+...|+++..+|.+.+||..... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 346678888888999999877643 211111 11224599999998889999999999999999864210 0
Q ss_pred ------e--eEeecCC---------CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEE
Q 000700 1211 ------L--VCSTRPH---------TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273 (1344)
Q Consensus 1211 ------~--v~~~~~~---------~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsl 1273 (1344)
. +.+.+.. .--.+.|...+|+|+ |++||+.+.||.++|||..+. +.+..++..-+...|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCV 338 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEE
Confidence 0 0000000 001357889999999 999999999999999999987 6777777777889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1274 AVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1274 a~spdg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
+|+|||++|++|++|--|.||.+. .+.+..=.+ | .+.|+.++|.|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-H-------kSWVs~VaFDp 384 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-H-------KSWVSVVAFDP 384 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEeccc-c-------ccceeeEeecc
Confidence 999999999999999999999965 455554444 4 48999999984
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=112.10 Aligned_cols=274 Identities=14% Similarity=0.167 Sum_probs=181.8
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCC-CEEEEEECCCeEEEEeccCC
Q 000700 1033 GTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDV-SLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1033 ~I~~l~fspdg~~La-tgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~-~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
.|.-+.|..|.-+++ ++..++.|.+|++...+-...+.... .++.+++| +||| .+|.+...+-.|.||.+.+.
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC---CcceeeeE--CCCcceEeeeecceeEEEEEEeccc
Confidence 456667777776555 55678899999999888888888887 89999999 7899 56667778999999999762
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE------------------------------------CCCe
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG------------------------------------EVSS 1154 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg------------------------------------~Dg~ 1154 (1344)
.+ ..+ +-.+..+.. ++|++++.+.+..+ ++..
T Consensus 125 ~~--~~~------~~pK~~~kg----~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 125 KG--YLL------PHPKTNVKG----YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred ee--EEe------cccccCcee----EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 22 111 111222222 45555554433322 1223
Q ss_pred EEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCee-----------------------
Q 000700 1155 IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML----------------------- 1211 (1344)
Q Consensus 1155 I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~----------------------- 1211 (1344)
+.|||.--+. .+..+. .+-.+..+ .++|.+++++.|+.|+.+|+.+--+.+..
T Consensus 193 laVwd~~Ley-kv~aYe--~~lG~k~v-~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 193 LAVWDNVLEY-KVYAYE--RGLGLKFV-EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred EEEecchhhh-eeeeee--eccceeEE-EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 4556644333 222222 22337777 67899999999999999998553221100
Q ss_pred ------------------------------------eEeecC---CCCCCCCeEEEEEecCCCCCEEEEEECC--CcEEE
Q 000700 1212 ------------------------------------VCSTRP---HTQQVERVVGISFQPGLDPAKIVSASQA--GDIQF 1250 (1344)
Q Consensus 1212 ------------------------------------v~~~~~---~~~h~~~I~sva~sp~~~g~~Lasgs~D--G~I~I 1250 (1344)
+...+. .......+.-++|+++ ..++++-.+. +.+.+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D--s~y~aTrnd~~PnalW~ 346 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD--STYAATRNDKYPNALWL 346 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC--ceEEeeecCCCCceEEE
Confidence 000000 0011234667899998 8888876543 66999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCE
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL 1330 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~ 1330 (1344)
||++.. .+..+-....+|....|+|..+.|+.+.....+++|...|........ . .-.|..+.|+.+|..
T Consensus 347 Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~------GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 347 WDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--K------GFNIQKLQWLQPGEF 416 (447)
T ss_pred Eechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--C------CceeeeEEecCCCcE
Confidence 999976 333333456789999999999988888777889999988855444432 2 247999999999999
Q ss_pred EEEEECCCe
Q 000700 1331 LAAGSADAC 1339 (1344)
Q Consensus 1331 Lasgs~Dg~ 1339 (1344)
++..+.|..
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 999988853
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=116.75 Aligned_cols=157 Identities=23% Similarity=0.363 Sum_probs=115.3
Q ss_pred EEEEecCCCeEEEEEC----------CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEE--EECCCeEEEE
Q 000700 1136 VVDWQQQSGYLYASGE----------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGSVRLY 1203 (1344)
Q Consensus 1136 ~v~ws~~~~~Llagg~----------Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~s--Gs~DGsVrIw 1203 (1344)
.+.|++.|.+|++-.. -|...+|.++.....+..+......+|.++ .|+|+|+.|++ |..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~-~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDV-AWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEE-EECcCCCEEEEEEccCCcccEEE
Confidence 4889999988877533 134556655433214555655445459999 77889988755 4467899999
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---CCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC
Q 000700 1204 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1204 Dlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~---DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
|++. + .+..+. ...+..+.|+|+ |+++++|+. .|.|.+||+++. +.+.+.. | ..++.++|+|+|+
T Consensus 89 d~~~-~-~i~~~~-----~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr 156 (194)
T PF08662_consen 89 DVKG-K-KIFSFG-----TQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGR 156 (194)
T ss_pred cCcc-c-EeEeec-----CCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCC
Confidence 9973 2 333331 356789999999 999999874 467999999976 6666665 3 3478999999999
Q ss_pred EEEEEeC------CCeEEEEeCCCceEEEEe
Q 000700 1281 IIASGSA------KQLIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1281 ~LasgS~------Dg~I~Iwd~~g~~l~~l~ 1305 (1344)
++++++. |..++||+..|+.+....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9998864 788999999999887654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=132.94 Aligned_cols=229 Identities=21% Similarity=0.229 Sum_probs=172.0
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEE
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~V 1157 (1344)
+-..+.| +.+|.+|+.|+..|.|-.+|..+..-..++ .-...|.+ +.|-.+..++++ ...+.++|
T Consensus 131 GPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--------~v~Etv~D----v~~LHneq~~AV-AQK~y~yv 195 (545)
T KOG1272|consen 131 GPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--------NVMETVRD----VTFLHNEQFFAV-AQKKYVYV 195 (545)
T ss_pred CCeeeee--cCCccEEEecCCccceeeeecccceeeeee--------ehhhhhhh----hhhhcchHHHHh-hhhceEEE
Confidence 4567788 789999999999999999998662111111 12234555 667655555444 55677999
Q ss_pred EECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000700 1158 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1237 (1344)
Q Consensus 1158 WDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~ 1237 (1344)
||-..-. ++.++.+.. |..+.+ -|..-+|++++..|.++.-|+.+++ ++..+.+- .+.+..++-+|. ..
T Consensus 196 YD~~GtE--lHClk~~~~--v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~---~G~~~vm~qNP~--Na 264 (545)
T KOG1272|consen 196 YDNNGTE--LHCLKRHIR--VARLEF-LPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTG---AGRTDVMKQNPY--NA 264 (545)
T ss_pred ecCCCcE--EeehhhcCc--hhhhcc-cchhheeeecccCCceEEEeechhh-hhHHHHcc---CCccchhhcCCc--cc
Confidence 9966444 677776544 788844 4667789999999999999999998 55554443 377888888998 88
Q ss_pred EEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEEeccCCccccccC
Q 000700 1238 KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKI 1316 (1344)
Q Consensus 1238 ~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~ 1316 (1344)
.+-+|..+|+|.+|..... +++..+..|.++|.+++++++|.++||.+.|..++|||+.+ ..+.++.. .
T Consensus 265 Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---------p 334 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---------P 334 (545)
T ss_pred eEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---------C
Confidence 9999999999999999987 88888889999999999999999999999999999999654 33333322 1
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1317 GSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1317 ~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
-+...++||..| +||.+ ....|.||.
T Consensus 335 ~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred CCcccccccccc-ceeee-cCCeeeeeh
Confidence 356778888665 44443 445789984
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-10 Score=126.99 Aligned_cols=256 Identities=13% Similarity=0.138 Sum_probs=178.2
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec--C
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ--Q 1142 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~--~ 1142 (1344)
....+..|. +.|..+.| ...|..|++|++|..|.+||... +...+ +-..+|...|.- ..|-| +
T Consensus 134 l~~kL~~H~---GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~--~~~~l----~f~SGH~~NvfQ----aKFiP~s~ 198 (559)
T KOG1334|consen 134 LQKKLNKHK---GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVS--GSPKL----SFESGHCNNVFQ----AKFIPFSG 198 (559)
T ss_pred hhhcccCCC---Cccceeee--cccCceeeccCccceEEeehhhc--cCccc----ccccccccchhh----hhccCCCC
Confidence 345577788 89999999 68999999999999999999966 33322 234677766655 33433 3
Q ss_pred CCeEEEEECCCeEEEEECCCCceee--eeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCC
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ 1220 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v--~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~ 1220 (1344)
...++.++.||.+++=.+.....+. ..+..|.+ .|.-++..+.....|.+++.|+.|.-+|+|......... ....
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~ 276 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREA 276 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccC-ccceeeecCCCCCcccccccccceeeeeeccCCccceee-eecc
Confidence 5678888999999987765433022 23334444 488886666667789999999999999999775322211 2222
Q ss_pred CCC---CeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccc-----eEEEecC------CCCeEEEEEcCCCCEEEEEe
Q 000700 1221 QVE---RVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA-----YLTIDAH------RGSLSALAVHRHAPIIASGS 1286 (1344)
Q Consensus 1221 h~~---~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~-----v~tl~~h------~~~Vtsla~spdg~~LasgS 1286 (1344)
+.. ....++..|. +...+++|+.|..+++||.+...+. +..+..| ...|++++++.++.-+.+.-
T Consensus 277 ~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred CCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 223 6778999998 6779999999999999999864211 2333222 34799999997766555556
Q ss_pred CCCeEEEEeC---CC----------ceEEE-EeccCCccccccCCCeEEEEE-ecCCCEEEEEECCCeEEEcC
Q 000700 1287 AKQLIKVFSL---EG----------EQLGT-IRYHHPSFMAQKIGSVNCLTF-HPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1287 ~Dg~I~Iwd~---~g----------~~l~~-l~~~h~~f~~~~~~~V~slaf-spdg~~Lasgs~Dg~I~IWd 1344 (1344)
.|-.|++++. .| ..+.. +++ |. ....|.++-| -|...++++|+.-|+|.||+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG-Hr-----N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG-HR-----NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcc-cc-----cccccceeeeccCccceEEecCccceEEEEe
Confidence 6778999973 23 12222 555 54 2345777766 68889999999999999996
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-09 Score=117.32 Aligned_cols=245 Identities=15% Similarity=0.228 Sum_probs=175.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEE-ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIW-NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VW-d~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
.+.+++...-|-++-+++.+.|.+++|| +.+.++.-..+....+ .+++++.+ ..+...|++|-.+|++.-+.+..
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP--~~~~~~~y--~~e~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP--SPCSAMEY--VSESRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCC--CCceEeee--eccceEEEEEEecceEEEEEhhh
Confidence 3567777778888899999999999999 5556665555543332 68899999 67889999999999999888755
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
.-++.... +....|...+.. +-|+.....+++.|.|..+.---.+.+. .+..+..... -+++.+ +-.
T Consensus 100 dfnkm~~~---r~~~~h~~~v~~----~if~~~~e~V~s~~~dk~~~~hc~e~~~-~lg~Y~~~~~--~t~~~~---d~~ 166 (404)
T KOG1409|consen 100 DFNKMTFL---KDYLAHQARVSA----IVFSLTHEWVLSTGKDKQFAWHCTESGN-RLGGYNFETP--ASALQF---DAL 166 (404)
T ss_pred hhhhcchh---hhhhhhhcceee----EEecCCceeEEEeccccceEEEeeccCC-cccceEeecc--CCCCce---eeE
Confidence 33333332 556778888877 5666677888888888766544444444 2222111000 111101 011
Q ss_pred EEEEEECCCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~-~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
+...|...|.|....+.... ..+. ...+|.+.+++++|.+. ...+.+|..|..|.+||+.........+.+|..
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~---~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLIT---TFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred EEEecccccceEEEEEeecCCceEE---EEcCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 44556666777665554332 1233 44578899999999998 999999999999999999877667778889999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1269 SLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1269 ~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
.|..+..-+..+.+.+++.||.|.+||.+
T Consensus 242 kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999999999999999964
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-08 Score=124.17 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=153.5
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCCC
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1129 (1344)
..|.+||.. +.....+..+. ..+.+..| ++|++.|+..+.+ ..|.+|++.. +....+ ......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~---~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~--g~~~~l------~~~~g~ 249 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA---EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLAT--GQRELV------ASFRGI 249 (433)
T ss_pred EEEEEECCC-CCCceEeecCC---CccccccC--CCCCCEEEEEecCCCCcEEEEEECCC--CCEEEe------ccCCCC
Confidence 468889986 44444555555 57888899 7899998887643 4699999865 443333 222222
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCe--EEEE
Q 000700 1130 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLY 1203 (1344)
Q Consensus 1130 V~s~~~~v~ws~~~~~Llag-g~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DGs--VrIw 1203 (1344)
... ..|++++..++.+ +.+| .|++||+.++. . ..+..+... .... .++++|+.++.++. +|. |.++
T Consensus 250 ~~~----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~-~~lt~~~~~-~~~~-~~spDG~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 250 NGA----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-L-TRLTNHFGI-DTEP-TWAPDGKSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred ccC----ceECCCCCEEEEEEeCCCCceEEEEECCCCC-e-EECccCCCC-ccce-EECCCCCEEEEEECCCCCceEEEE
Confidence 223 7899999988654 4444 69999998877 3 444443322 4556 67889998887764 454 6666
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEECCCCccceEEEecCCCCeEEEEEcCCCC
Q 000700 1204 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1204 Dlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG---~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
|+.+++ ..... .. .......+|+|+ |+.|+..+.++ .|.+||+.++ ... .+. +........|+|+|+
T Consensus 322 dl~~g~-~~~lt--~~--g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 322 AASGGS-AERLT--FQ--GNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred ECCCCC-eEEee--cC--CCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCCCCCCceECCCCC
Confidence 776655 22221 11 134457899999 88888765443 5999999876 333 333 233455679999999
Q ss_pred EEEEEeCC---CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1281 IIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1281 ~LasgS~D---g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
+++..+.+ +.|.+++.+|.....+.. +. +.+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGRVRQRLVS-AD-------GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCCceEEccc-CC-------CCCCCCccCC
Confidence 87776553 468888888877776665 33 5567778876
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=112.63 Aligned_cols=237 Identities=13% Similarity=0.188 Sum_probs=151.7
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEE
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~V 1157 (1344)
.+..++| ++.-..++++..|-+|++|+-.. +....+. ......|++ ++|.|.+..-++.+.-+-|.+
T Consensus 100 dlr~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtc----lawRPlsaselavgCr~gIci 166 (445)
T KOG2139|consen 100 DLRGVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTC----LAWRPLSASELAVGCRAGICI 166 (445)
T ss_pred ceeeEee--chhhhhhhhhccCcEEEEeccCC-CCCceec------chhhcceeE----EEeccCCcceeeeeecceeEE
Confidence 4566777 55666788889999999999754 1111111 122334555 999998877666666666999
Q ss_pred EECCCCc-----------eeeeeecCCCCCCeeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCCeeeEeecCCCCCCCCe
Q 000700 1158 WDLEKEQ-----------QMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRTPDMLVCSTRPHTQQVERV 1225 (1344)
Q Consensus 1158 WDl~~~~-----------~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs-~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I 1225 (1344)
|...... .+.+.++.....+|++| .++++|..+++++ .|..|.|||..++...--..+. .+.+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsm-qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g----lgg~ 241 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSM-QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG----LGGF 241 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEE-EEcCCCCEEeecccCcceEEEEcCCCCCcccccccC----CCce
Confidence 9765322 01122222233569999 6778888888765 5678999999988733222222 3679
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--CCCceEEE
Q 000700 1226 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGT 1303 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~~g~~l~~ 1303 (1344)
+-+.|+|+ +.+|.+++-|+..++|+........+ .....+.|....|+|+|++|.-... |.-.+|. ..++....
T Consensus 242 slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 242 SLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred eeEEEcCC--CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 99999999 99999999999999996554312222 2233558999999999996554332 3345555 22221111
Q ss_pred E-----eccCCc---------ccc--ccCCCeEEEEEecCCCEEEEEECC
Q 000700 1304 I-----RYHHPS---------FMA--QKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1304 l-----~~~h~~---------f~~--~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
. +. |.- -.+ --.+.+.+++|.|.|.+||+.-..
T Consensus 318 ~~~~~~k~-~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 318 LRPQSIKR-VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cCccccee-eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 0 00 000 000 124688999999999999987553
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-08 Score=118.62 Aligned_cols=234 Identities=10% Similarity=0.056 Sum_probs=153.5
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC---CCeEEEEeccCCCCceeEEeeeecccCCCCC
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1129 (1344)
..|.+||.+ |...+.+..+. ..+.+..| ++||+.|+..+. +..|.+||+.+ +....+ ..+...
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~---~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~--g~~~~l------~~~~g~ 247 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS---SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLET--GQRELV------GNFPGM 247 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC---CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCC--CcEEEe------ecCCCc
Confidence 478888885 45555566666 68999999 789998887763 46899999865 433332 233333
Q ss_pred ccccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--eEEEE
Q 000700 1130 VRCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLY 1203 (1344)
Q Consensus 1130 V~s~~~~v~ws~~~~~Llag-g~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DG--sVrIw 1203 (1344)
+.. ..|+|++..|+.+ +.++ .|.+||+.++. ...+..+.. ..... .++++|+.++..+. +| .|.++
T Consensus 248 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~-~~~~~-~~spDG~~i~f~s~~~g~~~Iy~~ 319 (435)
T PRK05137 248 TFA----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPA-IDTSP-SYSPDGSQIVFESDRSGSPQLYVM 319 (435)
T ss_pred ccC----cEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCC-ccCce-eEcCCCCEEEEEECCCCCCeEEEE
Confidence 444 7899999988655 4444 48888988876 344544333 24555 67899998887764 33 58888
Q ss_pred ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC
Q 000700 1204 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1204 Dlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D---G~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
|+..++ ..... . +...+....|+|+ |+.|+..+.+ ..|.+||+..+ ....+. ....+....|+|+|+
T Consensus 320 d~~g~~-~~~lt-~---~~~~~~~~~~Spd--G~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 320 NADGSN-PRRIS-F---GGGRYSTPVWSPR--GDLIAFTKQGGGQFSIGVMKPDGS--GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred ECCCCC-eEEee-c---CCCcccCeEECCC--CCEEEEEEcCCCceEEEEEECCCC--ceEecc-CCCCCCCCeECCCCC
Confidence 877665 32222 1 1245667889999 8888876643 35888888654 233333 233567889999999
Q ss_pred EEEEEeCC------CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1281 IIASGSAK------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1281 ~LasgS~D------g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
.|+..+.+ ..+.++|+++.....+.. . +.+...+|+|-
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~--~-------~~~~~p~Wsp~ 433 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT--P-------GDASDPAWSPL 433 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC--C-------CCccCcccCCC
Confidence 87765442 257788888766655432 1 34566777763
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=121.99 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=148.4
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCCC
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPG 1129 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~ 1129 (1344)
..|.++|.+ |.....+..+. ..+.+.+| ++||+.|+..+.+ ..|.+||+.. +....+ ......
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~---~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~--g~~~~l------~~~~g~ 241 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP---EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLAT--GRRRVV------ANFKGS 241 (427)
T ss_pred cEEEEECCC-CCCceEeccCC---CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCC--CCEEEe------ecCCCC
Confidence 457777764 54445555555 67888899 7899998877643 3599999865 433332 112222
Q ss_pred ccccceEEEEecCCCeEEEE-ECCCeEEEEE--CCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCeEEEEEC
Q 000700 1130 VRCSNVVVDWQQQSGYLYAS-GEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDV 1205 (1344)
Q Consensus 1130 V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWD--l~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DGsVrIwDl 1205 (1344)
+.. ..|+|++..|+.+ +.+|...+|. ...+. ...+..+.. .+.+. .++++|+.++..+. +|...+|.+
T Consensus 242 ~~~----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~-~~~~~-~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSA----PAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSG-IDTEP-FFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccc----eEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCC-CCcCe-EEcCCCCEEEEEecCCCCcEEEEE
Confidence 233 7999999988754 5677656654 44444 444444332 24555 57899998876654 466666655
Q ss_pred C--CCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEECCCCccceEEEecCCCCeEEEEEcCCCC
Q 000700 1206 R--TPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1206 r--~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG---~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
. ++. ..... ..+ .......|+|+ |++|+..+.++ .|.+||+.++ .. ..+..+ .......|+|+|+
T Consensus 314 ~~~~g~-~~~lt--~~g--~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g-~~-~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 314 PASGGA-AQRVT--FTG--SYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATG-QV-TALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred ECCCCc-eEEEe--cCC--CCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCC-Ce-EEccCC-CCccCceECCCCC
Confidence 4 333 22221 111 23446789999 99988777654 5999999876 33 333322 3346789999999
Q ss_pred EEEEEeCCC---eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1281 IIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1281 ~LasgS~Dg---~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
.|+.++.++ .+.+.+.+|.....+.. +. +.+...+|+|.
T Consensus 384 ~l~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~wsp~ 425 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSSDGRIKQRLSV-QG-------GDVREPSWGPF 425 (427)
T ss_pred EEEEEEecCCCEEEEEEECCCCceEEeec-CC-------CCCCCCccCCC
Confidence 887776543 35566677877666655 43 56777788874
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-08 Score=119.54 Aligned_cols=282 Identities=13% Similarity=0.194 Sum_probs=197.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---------------EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT---------------LLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1095 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~---------------~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t 1095 (1344)
.....|+.|+....++++|+.||.++|..+.+.. .-+++.+|+ ..|.-+.| ..+.+.|-|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~---~sV~vvTW--Ne~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN---ASVMVVTW--NENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc---ceEEEEEe--ccccccccc
Confidence 3568899999999999999999999999776431 123467888 89999999 567788889
Q ss_pred EECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeecCCC
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIPSSS 1174 (1344)
Q Consensus 1096 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v-~~i~~~~ 1174 (1344)
+..+|.|.||-++...--.+++ -....+.|. +++|+.+|..+...-.||.|.|=.++... .- +.+++..
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi-----NnRnKSvV~----SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~ 158 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI-----NNRNKSVVV----SMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQL 158 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh-----hCcCccEEE----EEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchhe
Confidence 9999999999997732222222 111223333 49999999999999999988877666544 11 2233321
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-------eeeEeecCCCCCCCCeEEEEEecC------CCCCEEEE
Q 000700 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-------MLVCSTRPHTQQVERVVGISFQPG------LDPAKIVS 1241 (1344)
Q Consensus 1175 ~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~-------~~v~~~~~~~~h~~~I~sva~sp~------~~g~~Las 1241 (1344)
...+ .+++|...++.+-.+|.+.+||....- ..+.....+......|-.+.|..+ .+...+++
T Consensus 159 ---l~hv-~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 159 ---LAHV-LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred ---ccce-eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 2344 578888889999999999999976321 112111112222234666776432 13778999
Q ss_pred EECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCceEEEEeccCCccc
Q 000700 1242 ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---------QLIKVFSLEGEQLGTIRYHHPSFM 1312 (1344)
Q Consensus 1242 gs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~D---------g~I~Iwd~~g~~l~~l~~~h~~f~ 1312 (1344)
+-.+|.+.|..-.+...++..-. .-.+....|+++|.+||.++.+ +.|.+|..-|+.+.+++. ..
T Consensus 235 cy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv-pg--- 308 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV-PG--- 308 (1189)
T ss_pred EEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEec-CC---
Confidence 99999999987666545543333 2568899999999999998754 367788877888888886 43
Q ss_pred cccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1313 AQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1313 ~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
..|++++|-..|-.+|.+ .|+.|.+
T Consensus 309 ----~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 309 ----SCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ----ceeeeeEEcCCceEEEEE-ecceEEE
Confidence 789999998888777665 4666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=109.52 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=101.1
Q ss_pred EEcCCCCEEEEEEC----------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE--EECCCcEEE
Q 000700 1183 ASQVHGGQLAAGFV----------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS--ASQAGDIQF 1250 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~----------DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Las--gs~DG~I~I 1250 (1344)
.|++.|+.|+.-.. -|...+|.++.....+..+.. ...+.|.+++|+|+ |+.+++ |..++.|.+
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l--~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL--KKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec--cCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence 45666665554322 244666666544433443322 12357999999999 777654 456789999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEec
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~---Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
||++ . +.+..+. ...+..+.|+|+|++|++|+. .|.|.+||.. .+.+.... | ..++.++|+|
T Consensus 88 yd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~--------~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H--------SDATDVEWSP 153 (194)
T ss_pred EcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c--------CcEEEEEEcC
Confidence 9997 3 5666664 567889999999999999864 4679999965 34444433 2 3578999999
Q ss_pred CCCEEEEEEC------CCeEEEcC
Q 000700 1327 YQVLLAAGSA------DACVSIHS 1344 (1344)
Q Consensus 1327 dg~~Lasgs~------Dg~I~IWd 1344 (1344)
+|++|++++. |+.++||+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEE
Confidence 9999999875 78888885
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-08 Score=116.86 Aligned_cols=215 Identities=11% Similarity=0.054 Sum_probs=140.7
Q ss_pred CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE-ECCC--eEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAAD---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNG--NIRIW 1105 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs---~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg-s~DG--~IrIW 1105 (1344)
..+...+|+|||+.|+..+ .+..|.+|++.+|+.... .... +.+....| ++||+.|+.. +.+| .|.+|
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~---~~~~~~~~--SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC---CCcCCeEE--CCCCCEEEEEEcCCCCcEEEEE
Confidence 4678999999999888654 245789999988754332 2222 23445778 8899988765 4455 47788
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC-C--eEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-S--SIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D-g--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
|+.+ +.... +..+...+.. ..|+|++..|+.++++ + .|.++|+.++. ...+...... ..+.
T Consensus 273 d~~t--g~~~~------lt~~~~~~~~----~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~-~~~~- 336 (429)
T PRK03629 273 DLAS--GQIRQ------VTDGRSNNTE----PTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQ-NQDA- 336 (429)
T ss_pred ECCC--CCEEE------ccCCCCCcCc----eEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCC-ccCE-
Confidence 8755 33322 2222333333 8999999988877653 4 45555776665 3333332222 4455
Q ss_pred EEcCCCCEEEEEECC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc---EEEEECCCC
Q 000700 1183 ASQVHGGQLAAGFVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD---IQFLDIRNH 1256 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~D---GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~---I~IWDlr~~ 1256 (1344)
.++++|+.++..+.+ ..|.+||+.++. .. .+... .......|+|+ |+.|+.++.++. +.++++..
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~-~Lt~~----~~~~~p~~SpD--G~~i~~~s~~~~~~~l~~~~~~G- 407 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQ-VLTDT----FLDETPSIAPN--GTMVIYSSSQGMGSVLNLVSTDG- 407 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-eE-EeCCC----CCCCCceECCC--CCEEEEEEcCCCceEEEEEECCC-
Confidence 678999998876554 358889998776 22 22111 12346789999 999998887765 67777753
Q ss_pred ccceEEEecCCCCeEEEEEcCC
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRH 1278 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spd 1278 (1344)
.....+..|.+.+...+|+|.
T Consensus 408 -~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -CCeEECccCCCCcCCcccCCC
Confidence 456677778888899999873
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-07 Score=109.08 Aligned_cols=266 Identities=17% Similarity=0.226 Sum_probs=161.0
Q ss_pred CEE-EEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeec
Q 000700 1044 PIV-VAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1044 ~~L-atgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1122 (1344)
+++ ++-..+|.|.|.|.++.+.+.++.... ..-..+.| ++|++++++++.||.|.++|+.+.+ .+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~--- 73 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG---APHAGLKF--SPDGRYLYVANRDGTVSVIDLATGK----VVAT--- 73 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST---TEEEEEE---TT-SSEEEEEETTSEEEEEETTSSS----EEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC---CceeEEEe--cCCCCEEEEEcCCCeEEEEECCccc----EEEE---
Confidence 344 455578999999999999999998765 33345667 8999999999999999999997622 3322
Q ss_pred ccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC------CCCCeeEEEEEcCCCCEEEEEE
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS------SDCSISALTASQVHGGQLAAGF 1195 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~------~~~~VtsL~~~s~dg~~L~sGs 1195 (1344)
+.. .....+ ++++++|++++++. ..+.+.++|.++.+ .+..++.. ..+.+.++ ..++....++..-
T Consensus 74 i~~-G~~~~~----i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aI-v~s~~~~~fVv~l 146 (369)
T PF02239_consen 74 IKV-GGNPRG----IAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAI-VASPGRPEFVVNL 146 (369)
T ss_dssp EE--SSEEEE----EEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEE-EE-SSSSEEEEEE
T ss_pred Eec-CCCcce----EEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeE-EecCCCCEEEEEE
Confidence 221 112233 78899999999886 78999999999998 88887654 23347777 5566677666555
Q ss_pred C-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEECCCCccceEEEec----CCCC
Q 000700 1196 V-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTIDA----HRGS 1269 (1344)
Q Consensus 1196 ~-DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasg-s~DG~I~IWDlr~~~~~v~tl~~----h~~~ 1269 (1344)
. .|.|.+.|....+........ .........|+|+ +++++.+ ..+..|-++|..+. +.+..+.. |...
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~---~g~~~~D~~~dpd--gry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIK---VGRFPHDGGFDPD--GRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGP 220 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TT--SSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETT
T ss_pred ccCCeEEEEEeccccccceeeec---ccccccccccCcc--cceeeecccccceeEEEeeccc-eEEEEeeccccccccc
Confidence 5 488988898766533222111 1256778999999 8877665 55678999999987 55555542 3444
Q ss_pred eEEEEEcCCC-CEEEEE---------eCCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEE---E
Q 000700 1270 LSALAVHRHA-PIIASG---------SAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG---S 1335 (1344)
Q Consensus 1270 Vtsla~spdg-~~Lasg---------S~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasg---s 1335 (1344)
+..+ .||.. .+.+++ -....+.+|| .+.+.+.++.. .. +. ..+.-||+++++.+. +
T Consensus 221 ~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G-------~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 221 GANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QG-------GG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp EEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE--SS-------SS---EE--TT-SEEEEE-TT-
T ss_pred cccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC-CC-------Cc-ceeecCCCCccEEeeccCC
Confidence 4443 33332 222222 1123455666 45678888876 32 34 677889999999988 3
Q ss_pred C-CCeEEEcC
Q 000700 1336 A-DACVSIHS 1344 (1344)
Q Consensus 1336 ~-Dg~I~IWd 1344 (1344)
. .+.|.|+|
T Consensus 291 ~~~~~v~viD 300 (369)
T PF02239_consen 291 PDADTVQVID 300 (369)
T ss_dssp SSHT-EEEEE
T ss_pred CCCceEEEEE
Confidence 3 46777764
|
... |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=109.47 Aligned_cols=254 Identities=14% Similarity=0.200 Sum_probs=170.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC-CceeEEeeeecccCCCC------------CccccceEEEEecCC
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK-DKQKLVTAFSSIQGHKP------------GVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~-~~~~lvs~~~~l~~h~~------------~V~s~~~~v~ws~~~ 1143 (1344)
.-|.++.| ...|.+|+||..+|.|.++.-.... ++.... ..++.|.. .|.. +.|.+++
T Consensus 26 diis~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~---t~fqshepEFDYLkSleieEKink----Irw~~~~ 96 (433)
T KOG1354|consen 26 DIISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQ---TEFQSHEPEFDYLKSLEIEEKINK----IRWLDDG 96 (433)
T ss_pred cceeeEEe--ecccceEeecCCCCeEEEeecccccccceeee---eeeeccCcccchhhhhhhhhhhhh----ceecCCC
Confidence 46889999 6899999999999999999765422 222222 22333332 2333 6787664
Q ss_pred C--eEEEEECCCeEEEEECCCCc----------------------------------eeeeeecCCCCCCeeEEEEEcCC
Q 000700 1144 G--YLYASGEVSSIMLWDLEKEQ----------------------------------QMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1144 ~--~Llagg~Dg~I~VWDl~~~~----------------------------------~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
+ .++..+.|++|++|-+.... .+.+.+...+..-|.++ ..+.|
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI-S~NsD 175 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI-SVNSD 175 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee-eecCc
Confidence 4 67788999999999876432 01111222233347778 55667
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecC--C--CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccc---e
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRP--H--TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---Y 1260 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~--~--~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~---v 1260 (1344)
+..++++ .|=.|.+|.+.-.......... . ..-..-|++..|||. ....++-.+..|+|++-|+|...-+ -
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCcEEEeechhhhhhcchh
Confidence 7777765 5778999988754433333211 1 011245889999998 7888999999999999999954211 1
Q ss_pred EEEe------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--CCCceEEEEeccCCccc--------cccCCC
Q 000700 1261 LTID------------AHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFM--------AQKIGS 1318 (1344)
Q Consensus 1261 ~tl~------------~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~~g~~l~~l~~~h~~f~--------~~~~~~ 1318 (1344)
+.+. .--..|..+.|+++|+++++-+. -+|++|| ++.+++.++.. |.... ....-.
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhh
Confidence 1111 11236888999999999998655 6899999 46778887777 65321 122223
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1319 VNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1319 V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
-..++|+-++.+++||+....+++|+
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEec
Confidence 45689999999999999999999875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-07 Score=115.12 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=135.1
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCceeeeeecCCCCC
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg---~Dg~I~VWDl~~~~~~v~~i~~~~~~ 1176 (1344)
..|.+||... ...+. +..+...+.+ ..|+|++..|+..+ .+..|.+||+.++. . ..+....+
T Consensus 182 ~~l~~~d~dg--~~~~~------lt~~~~~v~~----p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~-~~l~~~~g- 246 (435)
T PRK05137 182 KRLAIMDQDG--ANVRY------LTDGSSLVLT----PRFSPNRQEITYMSYANGRPRVYLLDLETGQ-R-ELVGNFPG- 246 (435)
T ss_pred eEEEEECCCC--CCcEE------EecCCCCeEe----eEECCCCCEEEEEEecCCCCEEEEEECCCCc-E-EEeecCCC-
Confidence 3677777643 22222 3445555655 89999999888775 34689999998877 3 33333333
Q ss_pred CeeEEEEEcCCCCEEE-EEECCCe--EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000700 1177 SISALTASQVHGGQLA-AGFVDGS--VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1250 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~-sGs~DGs--VrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG--~I~I 1250 (1344)
.+.+. .++++|+.++ +.+.+|. |.+||+.++. ... + ..+........|+|+ |+.|+..+. +| .|.+
T Consensus 247 ~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~-L---t~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 247 MTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTR-L---TDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cccCc-EECCCCCEEEEEEecCCCceEEEEECCCCc-eEE-c---cCCCCccCceeEcCC--CCEEEEEECCCCCCeEEE
Confidence 25566 6788998775 5555655 7777888775 322 2 233455677899999 888877664 33 5888
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~D---g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
||+..+ ....+..+.+.+....|+|+|+.|+..+.+ ..|.+||.++.....+.. . ..+....|+||
T Consensus 319 ~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~--~-------~~~~~p~~spD 387 (435)
T PRK05137 319 MNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS--G-------FLVEGPTWAPN 387 (435)
T ss_pred EECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC--C-------CCCCCCeECCC
Confidence 887754 334444445567778999999998876543 368888877665544432 1 23667899999
Q ss_pred CCEEEEEEC
Q 000700 1328 QVLLAAGSA 1336 (1344)
Q Consensus 1328 g~~Lasgs~ 1336 (1344)
|++|+..+.
T Consensus 388 G~~i~~~~~ 396 (435)
T PRK05137 388 GRVIMFFRQ 396 (435)
T ss_pred CCEEEEEEc
Confidence 998877655
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-07 Score=116.23 Aligned_cols=190 Identities=16% Similarity=0.113 Sum_probs=121.6
Q ss_pred CCCCCccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEE-EEECCCeE
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGSV 1200 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llagg~---Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~-sGs~DGsV 1200 (1344)
.+...+.+ .+|+|++..|+.++. ...|.+||+.++. .. .+...... +.+. .++++|+.++ +.+.+|..
T Consensus 193 ~~~~~v~~----p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~-~l~~~~g~-~~~~-~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 193 SSPEPIIS----PAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RR-VVANFKGS-NSAP-AWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred cCCCCccc----ceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EE-EeecCCCC-ccce-EECCCCCEEEEEEccCCCc
Confidence 44455555 899999999887763 2469999999887 43 23222222 4555 6789998876 56778876
Q ss_pred EEEEC--CCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCcEEEEECCCCccceEEEecCCCCeEEEEEcC
Q 000700 1201 RLYDV--RTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR 1277 (1344)
Q Consensus 1201 rIwDl--r~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~sp 1277 (1344)
.+|.+ ..+. ...+ ..+........|+|+ |+.|+..+. +|...+|.+...+.....+..+.......+|+|
T Consensus 265 ~Iy~~d~~~~~--~~~l---t~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp 337 (427)
T PRK02889 265 QIYTVNADGSG--LRRL---TQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP 337 (427)
T ss_pred eEEEEECCCCC--cEEC---CCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECC
Confidence 66654 3333 2222 223345667889999 888776554 566677765422222333322333345678999
Q ss_pred CCCEEEEEeCCC---eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCC
Q 000700 1278 HAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1278 dg~~LasgS~Dg---~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg 1338 (1344)
+|++|+..+.++ .|.+||+.+.....+.. . .......|+|+|++|+.++.++
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~--------~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTALTD-T--------TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEEccC-C--------CCccCceECCCCCEEEEEEecC
Confidence 999998776554 69999976655555543 2 2235679999999888777643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-07 Score=110.13 Aligned_cols=223 Identities=13% Similarity=0.118 Sum_probs=144.2
Q ss_pred CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCC
Q 000700 1052 NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKP 1128 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~ 1128 (1344)
...|.++|... .....+..+. ..+....| ++||+.|+.++.+ ..|.+|++.+ +....+ ..+..
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~---~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~--g~~~~~------~~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSR---EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLAT--GQREKV------ASFPG 234 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCC---CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCC--CCEEEe------ecCCC
Confidence 44577778753 3344455555 56778888 7899999887654 4799999866 433322 22223
Q ss_pred CccccceEEEEecCCCeEEEEE-CC--CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECC-C--eEEE
Q 000700 1129 GVRCSNVVVDWQQQSGYLYASG-EV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVD-G--SVRL 1202 (1344)
Q Consensus 1129 ~V~s~~~~v~ws~~~~~Llagg-~D--g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~D-G--sVrI 1202 (1344)
.+.. ..|++++..|+.+. .+ ..|++||+.++. ...+..+... .... .++++|+.|+..+.. | .|.+
T Consensus 235 ~~~~----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~-~~~~-~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGA----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGI-DTEP-SWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccc----eEECCCCCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCC-CCCE-EECCCCCEEEEEECCCCCceEEE
Confidence 3333 78999998887653 33 459999998776 3344433322 3444 567899888766543 3 5777
Q ss_pred EECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC---cEEEEECCCCccceEEEecCCCCeEEEEEcCCC
Q 000700 1203 YDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG---DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1203 wDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG---~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
+|+.+++ ..... .+...+....|+|+ |++++.++.++ .|.+||+.++ . ...+... .......|+|++
T Consensus 307 ~d~~~~~-~~~l~----~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~-~~~~~p~~spdg 376 (417)
T TIGR02800 307 MDADGGE-VRRLT----FRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGG-G-ERVLTDT-GLDESPSFAPNG 376 (417)
T ss_pred EECCCCC-EEEee----cCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCC-C-eEEccCC-CCCCCceECCCC
Confidence 8887665 22221 12356678899999 88888888776 7899998865 2 3333322 234556899999
Q ss_pred CEEEEEeCCC---eEEEEeCCCceEEEEec
Q 000700 1280 PIIASGSAKQ---LIKVFSLEGEQLGTIRY 1306 (1344)
Q Consensus 1280 ~~LasgS~Dg---~I~Iwd~~g~~l~~l~~ 1306 (1344)
..|+..+.++ .+.+.+.+|+....+..
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 9887776543 46666777877666654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-06 Score=98.40 Aligned_cols=276 Identities=14% Similarity=0.174 Sum_probs=172.1
Q ss_pred EEEEECC----CcEEEEEC--CCCcEE--EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC----CCeEEEEeccCCCCc
Q 000700 1046 VVAADEN----ERIKIWNY--EEDTLL--NSFDNHDFPDKGISKLCLVNELDVSLLLVASC----NGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1046 Latgs~d----g~I~VWd~--~tg~~l--~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----DG~IrIWdl~~~~~~ 1113 (1344)
+++|+.. +.|.+|++ ++++.. ..+... ...+.+++ ++++++|++... +|.|..|++....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES----SSECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC----CCCceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcce
Confidence 4556655 78999877 444432 222222 35667888 789999999977 579999998774455
Q ss_pred eeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee---eec---------CCCCCCeeE
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN---PIP---------SSSDCSISA 1180 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~---~i~---------~~~~~~Vts 1180 (1344)
.+.+..... . ..... .++.++++.+++++. .+|.|.++++........ .+. ........+
T Consensus 76 L~~~~~~~~-~--g~~p~----~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPS-G--GSSPC----HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEE-S--SSCEE----EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeecc-C--CCCcE----EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 555533221 1 11112 278889999999996 689999999987430211 121 112333667
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEECCCCCe-eeE--eecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEECCC
Q 000700 1181 LTASQVHGGQLAAGF-VDGSVRLYDVRTPDM-LVC--STRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRN 1255 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs-~DGsVrIwDlr~~~~-~v~--~~~~~~~h~~~I~sva~sp~~~g~~Lasgs-~DG~I~IWDlr~ 1255 (1344)
+ .++|+++++++.. ....|.+|++..... +.. .+.. .....-..+.|+|+ ++++++.. .++.|.++++..
T Consensus 149 v-~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pd--g~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 149 V-VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPD--GKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp E-EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TT--SSEEEEEETTTTEEEEEEEET
T ss_pred E-EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCC--cCEEEEecCCCCcEEEEeecc
Confidence 7 6788988777654 345799999976552 211 1111 23467889999999 77776554 578899999982
Q ss_pred Cc---cceEEEecC------CCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC--ceEEEEeccCCccccccCCCeEEEE
Q 000700 1256 HK---DAYLTIDAH------RGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLT 1323 (1344)
Q Consensus 1256 ~~---~~v~tl~~h------~~~Vtsla~spdg~~LasgS-~Dg~I~Iwd~~g--~~l~~l~~~h~~f~~~~~~~V~sla 1323 (1344)
.. ..+..+... ......+.++|+|++|.++. .++.|.+|+++. ..+..+.. .. ........++
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~----~~G~~Pr~~~ 298 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VP----TGGKFPRHFA 298 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EE----ESSSSEEEEE
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-Ee----CCCCCccEEE
Confidence 21 122233221 12578899999999877654 567899999732 23333322 11 0124579999
Q ss_pred EecCCCEEEEEEC-CCeEEEcC
Q 000700 1324 FHPYQVLLAAGSA-DACVSIHS 1344 (1344)
Q Consensus 1324 fspdg~~Lasgs~-Dg~I~IWd 1344 (1344)
++|+|++|++++. ++.|.+|+
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEE
Confidence 9999999998886 67888873
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.4e-09 Score=133.27 Aligned_cols=194 Identities=15% Similarity=0.295 Sum_probs=149.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
..|.++.=||..++-+||+.||.|++|.|..++.+..++...+ .+|+.+.| +..|+.+..+..||.+.+|....
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~p-- 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASP-- 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhh--cccCCceeeeccCCceeecccCC--
Confidence 5678888899999999999999999999999999999887653 78999999 67899999999999999999852
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE---CCCeEEEEECCCCc--eeeeeecCCCCCCeeEEEEEcC
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKEQ--QMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg---~Dg~I~VWDl~~~~--~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
+.. ...+.|.....+ +.|- +..++++| +++.+.+||.-... .++. ..|.++ ++++ .+-|
T Consensus 2283 ---k~~---~s~qchnk~~~D----f~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g-aT~l-~~~P 2346 (2439)
T KOG1064|consen 2283 ---KPY---TSWQCHNKALSD----FRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG-ATVL-AYAP 2346 (2439)
T ss_pred ---cce---eccccCCccccc----eeee--ehhhhccccCCCCCcccchhcccCcccceee--eecCCC-ceEE-EEcC
Confidence 222 335667766666 4443 34555553 67899999965433 1333 455444 9999 6678
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
..++|++|+.+|.|++||+|..+ +...++. ++ . ..++++|+..|.|+||++... ..+.++.
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrq-l~h~~~~------------~~-~--~~~f~~~ss~g~ikIw~~s~~-~ll~~~p 2407 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA------------LD-T--REYFVTGSSEGNIKIWRLSEF-GLLHTFP 2407 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHH-HHHHhhh------------hh-h--hheeeccCcccceEEEEcccc-chhhcCc
Confidence 89999999999999999999877 4443321 33 3 679999999999999999977 5565554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=108.88 Aligned_cols=271 Identities=12% Similarity=0.173 Sum_probs=170.1
Q ss_pred CeEEEEEcCCCCEEEEE-------E---CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeE
Q 000700 1033 GTKTALLQPFSPIVVAA-------D---ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latg-------s---~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1102 (1344)
.+.++.|+|-|.+|.+- . ..-.+.+|+.+++.....++... ..-++..| +.|..+ ++--..+.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~---Q~~W~~qf--s~dEsl-~arlv~nev 148 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM---QNGWVPQF--SIDESL-AARLVSNEV 148 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhh---hcCccccc--ccchhh-hhhhhcceE
Confidence 78899999999998872 1 13457799999976666665544 22257788 445443 333344579
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC-eEEEE------ECCCeEEEEECCCCceeeeeecCC--
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG-YLYAS------GEVSSIMLWDLEKEQQMVNPIPSS-- 1173 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~-~Llag------g~Dg~I~VWDl~~~~~~v~~i~~~-- 1173 (1344)
.+|++...++.... -|...+.. +.++|... ..++. |.-+.|+||-...+. .-..+...
T Consensus 149 ~f~~~~~f~~~~~k--------l~~~~i~~----f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksF 215 (566)
T KOG2315|consen 149 QFYDLGSFKTIQHK--------LSVSGITM----LSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSF 215 (566)
T ss_pred EEEecCCccceeee--------eeccceee----EEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccc
Confidence 99998653222211 13344444 66666522 22222 344679999876332 11111110
Q ss_pred -CCCCeeEEEEEcCCCCEEEEEE--CC---------CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE
Q 000700 1174 -SDCSISALTASQVHGGQLAAGF--VD---------GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS 1241 (1344)
Q Consensus 1174 -~~~~VtsL~~~s~dg~~L~sGs--~D---------GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Las 1241 (1344)
....|.-. |......+|+..+ .| .+++++++......+. + ...++|.++.|+|+ ++.+++
T Consensus 216 Fkadkvqm~-WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L----~k~GPVhdv~W~~s--~~EF~V 287 (566)
T KOG2315|consen 216 FKADKVQMK-WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-L----LKEGPVHDVTWSPS--GREFAV 287 (566)
T ss_pred cccceeEEE-eccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-c----CCCCCceEEEECCC--CCEEEE
Confidence 01113322 3322223333332 23 4688888884442222 2 12489999999999 766554
Q ss_pred --EECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeC-CCceEEEEeccCCcccccc
Q 000700 1242 --ASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSL-EGEQLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1242 --gs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~---Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~ 1315 (1344)
|-.--.+.|||++. .++..+. .++-+++-|+|+|++++.++- -|.|-|||+ +-+.+..+..
T Consensus 288 vyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------- 354 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------- 354 (566)
T ss_pred EEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---------
Confidence 45667899999994 4665554 677789999999998887665 488999994 5566777765
Q ss_pred CCCeEEEEEecCCCEEEEEEC------CCeEEEcC
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1344 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~------Dg~I~IWd 1344 (1344)
..-+-+.|+|||.+++|++. |+.++||.
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 34567899999999999876 78888884
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=113.54 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=130.4
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCC
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~---Dg~I~VWDl~~~~~~v~~i~~~~~~ 1176 (1344)
..|.+||... ..... +..+...+.+ ..|+|++..|+.++. ...|++||+.++. .. .+.....
T Consensus 184 ~~l~i~D~~g--~~~~~------lt~~~~~v~~----p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~-~l~~~~g- 248 (433)
T PRK04922 184 YALQVADSDG--YNPQT------ILRSAEPILS----PAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RE-LVASFRG- 248 (433)
T ss_pred EEEEEECCCC--CCceE------eecCCCcccc----ccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EE-EeccCCC-
Confidence 3588888743 22222 3344445555 899999999888763 3469999998877 32 2322222
Q ss_pred CeeEEEEEcCCCCEEE-EEECCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc--EEE
Q 000700 1177 SISALTASQVHGGQLA-AGFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD--IQF 1250 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~-sGs~DG--sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG~--I~I 1250 (1344)
...+. .++++|+.++ +.+.+| .|++||+.+++ ... + ..+.......+|+|+ |+.|+.++. +|. |.+
T Consensus 249 ~~~~~-~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~-l---t~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 249 INGAP-SFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTR-L---TNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CccCc-eECCCCCEEEEEEeCCCCceEEEEECCCCC-eEE-C---ccCCCCccceEECCC--CCEEEEEECCCCCceEEE
Confidence 23455 6788998775 445555 59999998876 322 2 223345567899999 888877664 455 666
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg---~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
+|+.++ . ...+..+.......+|+|+|+.|+..+.++ .|.+||+.+.....+.. . .......|+|+
T Consensus 321 ~dl~~g-~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~--~-------~~~~~p~~spd 389 (433)
T PRK04922 321 VAASGG-S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP--G-------SLDESPSFAPN 389 (433)
T ss_pred EECCCC-C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC--C-------CCCCCceECCC
Confidence 676655 2 333333334455789999999988765433 68999976655554432 1 12345789999
Q ss_pred CCEEEEEEC
Q 000700 1328 QVLLAAGSA 1336 (1344)
Q Consensus 1328 g~~Lasgs~ 1336 (1344)
|++++..+.
T Consensus 390 G~~i~~~s~ 398 (433)
T PRK04922 390 GSMVLYATR 398 (433)
T ss_pred CCEEEEEEe
Confidence 998777665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-06 Score=97.50 Aligned_cols=253 Identities=14% Similarity=0.201 Sum_probs=162.0
Q ss_pred CCCeEEEEEcCCCCEEEEEEC----CCcEEEEECCCC----cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE-CCCe
Q 000700 1031 EKGTKTALLQPFSPIVVAADE----NERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGN 1101 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~----dg~I~VWd~~tg----~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~ 1101 (1344)
...++-++++|++++|.++.. +|.|..|++... +.+.+..... .....+++ ++++++|+++. .+|.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g---~~p~~i~~--~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG---SSPCHIAV--DPDGRFLYVANYGGGS 110 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS---SCEEEEEE--CTTSSEEEEEETTTTE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC---CCcEEEEE--ecCCCEEEEEEccCCe
Confidence 356788999999999998876 579999988754 2333333222 45667888 78999999987 5899
Q ss_pred EEEEeccCCCCceeEEeeeecccC--------CCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCce---eeee
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQG--------HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQ---MVNP 1169 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~--------h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~---~v~~ 1169 (1344)
|.++++... +............+ ...... .+.++|+++++++.. ....|.+|++..... ....
T Consensus 111 v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H----~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 111 VSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPH----QVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp EEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEE----EEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred EEEEEccCC-cccceeeeecccCCCCCcccccccccce----eEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 999999763 33222211111111 111122 388999999999985 345799999876541 1234
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEE-ECCCeEEEEECC--CCCe-eeEeecCCC---CCCCCeEEEEEecCCCCCEEEEE
Q 000700 1170 IPSSSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVR--TPDM-LVCSTRPHT---QQVERVVGISFQPGLDPAKIVSA 1242 (1344)
Q Consensus 1170 i~~~~~~~VtsL~~~s~dg~~L~sG-s~DGsVrIwDlr--~~~~-~v~~~~~~~---~h~~~I~sva~sp~~~g~~Lasg 1242 (1344)
+....+..-..+ .++++++++++. -.++.|.+|++. .+.. ......... ........|+++|+ |++|+++
T Consensus 186 ~~~~~G~GPRh~-~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd--g~~lyvs 262 (345)
T PF10282_consen 186 IKVPPGSGPRHL-AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD--GRFLYVS 262 (345)
T ss_dssp EECSTTSSEEEE-EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT--SSEEEEE
T ss_pred cccccCCCCcEE-EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC--CCEEEEE
Confidence 444445557888 677888877555 457889999988 3221 112221210 11236889999999 8887776
Q ss_pred E-CCCcEEEEECCCC-c--cceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeC
Q 000700 1243 S-QAGDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSL 1296 (1344)
Q Consensus 1243 s-~DG~I~IWDlr~~-~--~~v~tl~~h~~~Vtsla~spdg~~LasgS-~Dg~I~Iwd~ 1296 (1344)
. .++.|.+|++... + ..+..+.......+.++++|+|++|+++. .++.|.+|++
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 6 5677999999432 1 23344444445689999999999888776 5678999975
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=111.28 Aligned_cols=211 Identities=15% Similarity=0.215 Sum_probs=152.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeee
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1120 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1120 (1344)
|-..++|..+.||.++||+..+++....|.......+..++..| . |..... ..+ |.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w--~-----L~~~~s--~~k-~~-------------- 58 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKW--G-----LSADYS--PMK-WL-------------- 58 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEE--E-----EEeccc--hHH-HH--------------
Confidence 45668999999999999999999888777654322345555555 1 111110 000 00
Q ss_pred ecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec-CCCCCCeeEEEEEcCCCCEEEEEECCCe
Q 000700 1121 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-SSSDCSISALTASQVHGGQLAAGFVDGS 1199 (1344)
Q Consensus 1121 ~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~-~~~~~~VtsL~~~s~dg~~L~sGs~DGs 1199 (1344)
.+... ..-+.+...++-|...|.|.+|+...++ ....+. +.+...|+++ .+..+-..|.+++.|+.
T Consensus 59 -~~~~~----------~~~s~~t~~lvlgt~~g~v~~ys~~~g~-it~~~st~~h~~~v~~~-~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 59 -SLEKA----------KKASLDTSMLVLGTPQGSVLLYSVAGGE-ITAKLSTDKHYGNVNEI-LDAQRLGCIYSVGADLK 125 (541)
T ss_pred -hHHHH----------hhccCCceEEEeecCCccEEEEEecCCe-EEEEEecCCCCCcceee-ecccccCceEecCCcee
Confidence 00000 0011234456667788999999999998 777766 4455668888 55667778999999999
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCC-
Q 000700 1200 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH- 1278 (1344)
Q Consensus 1200 VrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd- 1278 (1344)
+..|+..... ..+.++.. ...+.+++++|+ |..+++|+ +.|++||+.+. +.+.+|.+|.++|+++.|--+
T Consensus 126 v~~~~~~~~~-~~~~~~~~---~~~~~sl~is~D--~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 126 VVYILEKEKV-IIRIWKEQ---KPLVSSLCISPD--GKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred EEEEecccce-eeeeeccC---CCccceEEEcCC--CCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEec
Confidence 9999998877 66666544 478999999999 99999987 68999999998 899999999999999999876
Q ss_pred ----CCEEEE-EeCCCeEEEEeCC
Q 000700 1279 ----APIIAS-GSAKQLIKVFSLE 1297 (1344)
Q Consensus 1279 ----g~~Las-gS~Dg~I~Iwd~~ 1297 (1344)
|.++.+ ...+..+.+|-..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cccccceeeeccccccceeEEEEE
Confidence 555544 4556667888744
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=130.91 Aligned_cols=224 Identities=18% Similarity=0.244 Sum_probs=157.9
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEE
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~V 1157 (1344)
.|.++.- ++...+-+||+.||.|++|.... ...+.+|++... ..|+. +.|+.+|+.+-++..||.+.+
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~--s~vtr----~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGN--SRVTR----SRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccC----CCeEEEeeccCc--chhhh----hhhcccCCceeeeccCCceee
Confidence 3444443 56778999999999999999843 444555665433 56666 678889999999999999999
Q ss_pred EECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1158 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1158 WDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs---~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
|.+. .+ .....+.|... ...+.+.. ..+++++ .++.+.+||......... .++.|.+.++++++-|.
T Consensus 2278 ~q~~-pk-~~~s~qchnk~-~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~---v~~~H~~gaT~l~~~P~- 2347 (2439)
T KOG1064|consen 2278 WQAS-PK-PYTSWQCHNKA-LSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSL---VHTCHDGGATVLAYAPK- 2347 (2439)
T ss_pred cccC-Cc-ceeccccCCcc-ccceeeee---hhhhccccCCCCCcccchhcccCcccce---eeeecCCCceEEEEcCc-
Confidence 9987 44 57777777665 66665542 4555543 478899999875542222 23678899999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-ceEEEEecc--CCcc
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYH--HPSF 1311 (1344)
Q Consensus 1235 ~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~--h~~f 1311 (1344)
...|++|+.+|.|++||++.. +.+.+++. ++ ...++++|+..|.|+||++++ ..+.++... |.+|
T Consensus 2348 -~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2348 -HQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred -ceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 999999999999999999986 67766664 55 567999999999999999764 333333321 3344
Q ss_pred ccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1312 MAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1312 ~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
.. +.+ ..+-.. ..+.|.+++.||+
T Consensus 2416 Fr-~~g--~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FR-NIG--MQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred hh-hcC--ceeeec-cCceEEEecCCCC
Confidence 21 222 222222 3356777777774
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=102.89 Aligned_cols=249 Identities=13% Similarity=0.158 Sum_probs=160.9
Q ss_pred CCeEEEEEcC---CCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEEEECCCeEEEEe
Q 000700 1032 KGTKTALLQP---FSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1032 ~~I~~l~fsp---dg~-~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~tgs~DG~IrIWd 1106 (1344)
+.+..+.|.. +|. .|+-+..+|.|.+|.....+....+++-....-.+. ++...+++.+.-++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455555543 344 567777899999998765554444544331112222 33333377888899999999998554
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecC-CCeEEEEECCCeEEEEECCCCceeeee-ecCCCCCCeeEEEEE
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-SGYLYASGEVSSIMLWDLEKEQQMVNP-IPSSSDCSISALTAS 1184 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-~~~Llagg~Dg~I~VWDl~~~~~~v~~-i~~~~~~~VtsL~~~ 1184 (1344)
... ...+ ..+..+.|..+.+. ..|+.. .+.+++||+|+.+..||++.....+.. .+.|..+ |.++...
T Consensus 150 ~t~--~~le---~vq~wk~He~E~Wt----a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G-V~SI~ss 219 (339)
T KOG0280|consen 150 ETE--MVLE---KVQTWKVHEFEAWT----AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG-VVSIYSS 219 (339)
T ss_pred cce--eeee---ecccccccceeeee----eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc-eEEEecC
Confidence 422 2222 22567888888777 555433 357788899999999999933324444 4556555 9999777
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-c---ce
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-D---AY 1260 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~---~v 1260 (1344)
++.+.++++|+.|-.|++||.|+..+.+..- .-.+.|..+.++|. ....++.++.-.-.+|-+..... + ..
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~-~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIKHHPE-IFHRLLAACMHNGAKILDSSDKVLEFQIVL 294 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEEecch-hhhHHHHHHHhcCceEEEecccccchheee
Confidence 8889999999999999999999654444332 12378999999997 23333444444446777776542 2 33
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEe-CCCeEE-EEe
Q 000700 1261 LTIDAHRGSLSALAVHRHAPIIASGS-AKQLIK-VFS 1295 (1344)
Q Consensus 1261 ~tl~~h~~~Vtsla~spdg~~LasgS-~Dg~I~-Iwd 1295 (1344)
...+.|.+-...-.|.....+|||++ .|+.++ +|-
T Consensus 295 ~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred eccccccceeeccccccccceeeeeeccccceeeeee
Confidence 44556777667777755556788864 455544 564
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-09 Score=118.59 Aligned_cols=223 Identities=19% Similarity=0.243 Sum_probs=154.3
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
.+..|.+|. ..|..+.-+ .+.+-+++++.|++|++|.+...........+.-+++.|+.+|.++++ -.+..
T Consensus 727 rL~nf~GH~---~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf----L~~lr 797 (1034)
T KOG4190|consen 727 RLCNFTGHQ---EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF----LADLR 797 (1034)
T ss_pred eeecccCcH---HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee----eeccc
Confidence 345577888 777777663 467789999999999999997644433333344568899999999544 33333
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeec-C---CCCCCeeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCCeeeEeecCC-
Q 000700 1145 YLYASGEVSSIMLWDLEKEQQMVNPIP-S---SSDCSISALTASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVCSTRPH- 1218 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~~~v~~i~-~---~~~~~VtsL~~~s~dg~~L~sG-s~DGsVrIwDlr~~~~~v~~~~~~- 1218 (1344)
+ +++.||.|.+||.-.+. .+..+. . .....|.++ -+.+..++++| +...+|+++|.|..+ -++.++..
T Consensus 798 ~--i~ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl--~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcn 871 (1034)
T KOG4190|consen 798 S--IASCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCL--ENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCN 871 (1034)
T ss_pred e--eeeccCcceeecccccc-hhHhhhcCcccCCCceeEec--ccCcchheeeeccchhhheeeeccccc-ceeeEEecc
Confidence 3 44667889999987666 444222 1 122224444 22355666666 678899999999876 44444433
Q ss_pred -CCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE-Ee-
Q 000700 1219 -TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV-FS- 1295 (1344)
Q Consensus 1219 -~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~I-wd- 1295 (1344)
.+....+.++++.+. |+.++.|-.+|.|.+.|.|++ +.+..++........++- |..+.++....|.++.| |-
T Consensus 872 a~~Pna~~R~iaVa~~--GN~lAa~LSnGci~~LDaR~G-~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 872 APGPNALTRAIAVADK--GNKLAAALSNGCIAILDARNG-KVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CCCCchheeEEEeccC--cchhhHHhcCCcEEEEecCCC-ceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehh
Confidence 345577899999998 999999999999999999998 777777765554444443 45567777778888888 87
Q ss_pred CCCceEEEEec
Q 000700 1296 LEGEQLGTIRY 1306 (1344)
Q Consensus 1296 ~~g~~l~~l~~ 1306 (1344)
.+|......+.
T Consensus 948 ldgimh~q~kp 958 (1034)
T KOG4190|consen 948 LDGIMHLQDKP 958 (1034)
T ss_pred cCCeeeeccCC
Confidence 66655555443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.6e-08 Score=106.18 Aligned_cols=257 Identities=15% Similarity=0.254 Sum_probs=169.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----cEEEEeeCCCCC---------CCCeEEEEEEeeCCCCEEEEE
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-----TLLNSFDNHDFP---------DKGISKLCLVNELDVSLLLVA 1096 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg-----~~l~~~~~h~~~---------~~~ItsL~f~ns~d~~~L~tg 1096 (1344)
...|+++.|...|.+|++|+..|.|.+|.-+.. +....|++|... ...|..+.|........++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 367999999999999999999999999976532 334457777643 136888899744455677778
Q ss_pred ECCCeEEEEeccCCCCce---------------------------------eEE--eeeecc-cCCCCCccccceEEEEe
Q 000700 1097 SCNGNIRIWKDYDQKDKQ---------------------------------KLV--TAFSSI-QGHKPGVRCSNVVVDWQ 1140 (1344)
Q Consensus 1097 s~DG~IrIWdl~~~~~~~---------------------------------~lv--s~~~~l-~~h~~~V~s~~~~v~ws 1140 (1344)
+.|.+|++|.++...-+. +.+ ..-+.+ ..|..-+.+ +.++
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS----iS~N 181 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS----ISFN 181 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee----eeec
Confidence 899999999997631000 000 000001 223333333 5666
Q ss_pred cCCCeEEEEECCCeEEEEECCCCce--eeeeecCCCCC----CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeE-
Q 000700 1141 QQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDC----SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC- 1213 (1344)
Q Consensus 1141 ~~~~~Llagg~Dg~I~VWDl~~~~~--~v~~i~~~~~~----~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~- 1213 (1344)
.+...++ +.+|=.|.+|+++-... .+..++.|.-. -|++-.+.+...+.+...+..|.|++-|+|....+..
T Consensus 182 sD~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 5555554 45666799998875431 23444444321 2566655656678888899999999999995431111
Q ss_pred --eec---------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC------------CCe
Q 000700 1214 --STR---------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------------GSL 1270 (1344)
Q Consensus 1214 --~~~---------~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~------------~~V 1270 (1344)
.+. .+.+-.+.|..+.|++. |+++++-+. -+|+|||++....++.++.-|. ..|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~n--gryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDN--GRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCC--CcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 000 01122357889999998 999987765 5899999999888999987663 222
Q ss_pred ---EEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1271 ---SALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1271 ---tsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
..+.|+.+...+.+|+.....-+|-
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeec
Confidence 3577888888888888877766665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-07 Score=103.77 Aligned_cols=274 Identities=15% Similarity=0.181 Sum_probs=173.9
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC
Q 000700 1032 KGTKTALLQPFSPIVVAAD-----------ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs-----------~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1100 (1344)
..|.-+.|||.++||+|-+ +...++|||+.+|...+.|.....+ ..+.. -|-|+.|+.+++.-..|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP-~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWP-IFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccc-eEEeccCCceeEEeccc-
Confidence 4699999999999999965 2367999999999999988874311 22222 23348899999987765
Q ss_pred eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE--CC---CeEEEEECCCCceeeeeecCCCC
Q 000700 1101 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EV---SSIMLWDLEKEQQMVNPIPSSSD 1175 (1344)
Q Consensus 1101 ~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg--~D---g~I~VWDl~~~~~~v~~i~~~~~ 1175 (1344)
.|.||+... ..+.. .-.-...+|.. ..|+|.+..|+-=. .+ ..+.+..+.+.+ .+++-..++-
T Consensus 327 sisIyEtps----f~lld---~Kslki~gIr~----FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnV 394 (698)
T KOG2314|consen 327 SISIYETPS----FMLLD---KKSLKISGIRD----FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNV 394 (698)
T ss_pred eEEEEecCc----eeeec---ccccCCccccC----cccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccceee
Confidence 688998633 22220 01112344555 78888765554322 11 235555665555 4444333322
Q ss_pred CCeeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-
Q 000700 1176 CSISALTASQVHGGQLAAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ- 1244 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs----------~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~- 1244 (1344)
+ =..+ .|+..|.+|+.-- .-..+.|+.+|...-.+... .+ ...|...+|-|. |+.+++-+.
T Consensus 395 s-DckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-el---ke~vi~FaWEP~--gdkF~vi~g~ 466 (698)
T KOG2314|consen 395 S-DCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-EL---KESVIAFAWEPH--GDKFAVISGN 466 (698)
T ss_pred e-ccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ec---chheeeeeeccC--CCeEEEEEcc
Confidence 1 1234 5677788776521 11246677777766455444 23 278999999999 777665543
Q ss_pred --CCcEEEEECCCC-c--cceEEEecCCCCeEEEEEcCCCCEEEEE---eCCCeEEEEeCCCceEEEEec-cCCcccccc
Q 000700 1245 --AGDIQFLDIRNH-K--DAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRY-HHPSFMAQK 1315 (1344)
Q Consensus 1245 --DG~I~IWDlr~~-~--~~v~tl~~h~~~Vtsla~spdg~~Lasg---S~Dg~I~Iwd~~g~~l~~l~~-~h~~f~~~~ 1315 (1344)
..++.+|-+.+. . ..+..+. ....+.+.|+|.|++++.+ |..|.+.++|++-..+..... .|
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh------- 537 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH------- 537 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-------
Confidence 356889988732 2 3344444 3567889999999988765 457889999976422222111 02
Q ss_pred CCCeEEEEEecCCCEEEEEECCC
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~Dg 1338 (1344)
...+.+.|.|.|+|++|+++-.
T Consensus 538 -~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 -FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -cccccceECCCCCEEEEeeehh
Confidence 3567899999999999998743
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=118.60 Aligned_cols=192 Identities=16% Similarity=0.297 Sum_probs=143.3
Q ss_pred CCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000700 1088 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1167 (1344)
Q Consensus 1088 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v 1167 (1344)
.+...++.+..+..+-+||... +. +. ..+.............+-.+.+.-++++|+.-+.|.+|+..... .-
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~--~~--~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~p 168 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKN--SS--VL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-KP 168 (967)
T ss_pred hhcceEEEEEcCceEEEEeccc--Cc--ee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-Cc
Confidence 3567788888888999999854 11 11 11121111111111223344555577778888999999998444 33
Q ss_pred eeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000700 1168 NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1247 (1344)
Q Consensus 1168 ~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~ 1247 (1344)
..+.+|.+. |-++ .++.+|.++++.+.|.++|+|++.+.+.... ..-+|...|..+.++|. .+++++.|.+
T Consensus 169 ~~l~GHeG~-iF~i-~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~---~~fgHsaRvw~~~~~~n----~i~t~gedct 239 (967)
T KOG0974|consen 169 IRLKGHEGS-IFSI-VTSLDGRYIASVSDDRSIRLWPIDSREVLGC---TGFGHSARVWACCFLPN----RIITVGEDCT 239 (967)
T ss_pred ceecccCCc-eEEE-EEccCCcEEEEEecCcceeeeecccccccCc---ccccccceeEEEEeccc----eeEEeccceE
Confidence 357788776 8888 6778999999999999999999998874431 22278999999999975 9999999999
Q ss_pred EEEEECCCCccceEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1248 IQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1248 I~IWDlr~~~~~v~tl~~h~-~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
.++|+... ..+..+..|. ..++.++.++...+.+|++.|+.+++|+..+
T Consensus 240 crvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99997763 4666888885 4799999999999999999999999999643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-06 Score=105.00 Aligned_cols=234 Identities=11% Similarity=0.099 Sum_probs=145.4
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCCCc
Q 000700 1054 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130 (1344)
Q Consensus 1054 ~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1130 (1344)
.|.++|.+.+. ...+..+. ..+....| ++||+.|+..+.+ ..|.+|++.+ +..+.+ ......+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~---~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~--g~~~~l------~~~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSR---EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDT--GRREQI------TNFEGLN 245 (430)
T ss_pred EEEEECCCCCC-ceEEecCC---CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCC--CCEEEc------cCCCCCc
Confidence 47777877443 34454455 57888888 7899988776543 3588888865 433332 1122222
Q ss_pred cccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--eEEEEE
Q 000700 1131 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1204 (1344)
Q Consensus 1131 ~s~~~~v~ws~~~~~Llag-g~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DG--sVrIwD 1204 (1344)
.. ..|+|++..|+.. ..+| .|.+||+.++. . ..+..+... .... .++++|+.++..+. +| .|.++|
T Consensus 246 ~~----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~-~~lt~~~~~-~~~~-~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 246 GA----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-L-SRVTNHPAI-DTEP-FWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CC----eEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEcccCCCC-cCCe-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988755 3344 68889998876 3 344433322 4455 57889988776654 33 577778
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEECCCCccceEEEecCCCCeEEEEEcCCCCE
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1281 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D-G--~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~ 1281 (1344)
+.+++ ..+.. ..+ .......|+|+ |+.++..+.+ + .|.+||+.++ .. ..+.. ........|+|+|+.
T Consensus 318 ~~~g~-~~~lt--~~~--~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg-~~-~~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 318 VNGGR-AERVT--FVG--NYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRG-SV-RILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred CCCCC-EEEee--cCC--CCccceEECCC--CCEEEEEEccCCceEEEEEECCCC-CE-EEccC-CCCCCCceECCCCCE
Confidence 77665 22221 111 23345789999 8888776643 3 4888998876 32 33322 222235689999998
Q ss_pred EEEEeCC---CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1282 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1282 LasgS~D---g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
++..+.+ ..|.+++.+|.....+.. +. +.+...+|+|.
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~~l~~-~~-------g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRLPLPT-AQ-------GEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 8766543 357777888876655554 32 45667778764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-07 Score=109.01 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=142.8
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCC---CCCCeeEEEEE-------------------cCCCCEEEEEECCCe
Q 000700 1142 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS---SDCSISALTAS-------------------QVHGGQLAAGFVDGS 1199 (1344)
Q Consensus 1142 ~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~---~~~~VtsL~~~-------------------s~dg~~L~sGs~DGs 1199 (1344)
...+++....||.+++||...++ ..+.+... .+. .++..|. +.+...++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t-~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGT-CTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCce-eeeeeccchhccCc-ceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567777899999999999887 55555421 122 2222121 123457888999999
Q ss_pred EEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCC
Q 000700 1200 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1200 VrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
|.+|+...++ ....+ .-.+|.+.|+++.++.. ...|.+++.|+.+..|+.... ..+..+......+.+++++|||
T Consensus 82 v~~ys~~~g~-it~~~-st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 82 VLLYSVAGGE-ITAKL-STDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEEecCCe-EEEEE-ecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcCCC
Confidence 9999999988 44444 33478899999999888 889999999999999999987 7888999888999999999999
Q ss_pred CEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecC-----CCEEEEE-ECCCeEEEc
Q 000700 1280 PIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY-----QVLLAAG-SADACVSIH 1343 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspd-----g~~Lasg-s~Dg~I~IW 1343 (1344)
.++++++ +.|++||+ +++.+..+.+ |. ++|++++|.-. |.++.++ ..+..+.+|
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~ftg-h~-------s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITFTG-HG-------SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEecC-CC-------cceEEEEEEEeccccccceeeeccccccceeEE
Confidence 9999988 78999996 5677778887 76 89999999877 5555544 335556665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-07 Score=105.56 Aligned_cols=242 Identities=15% Similarity=0.231 Sum_probs=161.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-----EECCCeEEEEeccC
Q 000700 1035 KTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-----ASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1035 ~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-----gs~DG~IrIWdl~~ 1109 (1344)
.+..|+.|+.+.+--. .+.+.+|+..+.+.+. -+-|. ..|+.+.+++.+....+++ +|.-+.||||....
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~-~kl~~---~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ-HKLSV---SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCCcccee-eeeec---cceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 3567888877544322 5679999987632221 12233 6788999855444555554 34556899999853
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEE-EE--CC---------CeEEEEECCCCceeeeeecCCCCCC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA-SG--EV---------SSIMLWDLEKEQQMVNPIPSSSDCS 1177 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla-gg--~D---------g~I~VWDl~~~~~~v~~i~~~~~~~ 1177 (1344)
. +....+ +...--.+-.+.+.|++.+.-|++ ++ -| .++++.++..+. +...+. ..++
T Consensus 204 ~-~~~~~~-------a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~--k~GP 272 (566)
T KOG2315|consen 204 E-GQHQPV-------ANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLL--KEGP 272 (566)
T ss_pred c-cccchh-------hhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecC--CCCC
Confidence 1 111111 111111222335889887765443 22 22 358888888655 555544 3567
Q ss_pred eeEEEEEcCCCCEEE--EEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEE
Q 000700 1178 ISALTASQVHGGQLA--AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLD 1252 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~--sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D---G~I~IWD 1252 (1344)
|.++ .|++++..|+ .|..-..+.+||++..- +..+ . .++-+++-|+|. |++++.++.+ |.|.|||
T Consensus 273 Vhdv-~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~---egpRN~~~fnp~--g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 273 VHDV-TWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--P---EGPRNTAFFNPH--GNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred ceEE-EECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--C---CCCccceEECCC--CCEEEEeecCCCCCceEEEe
Confidence 9999 6778887655 46777899999998664 3332 1 266778999999 9999988764 8899999
Q ss_pred CCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeCCCceEEEEe
Q 000700 1253 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA------KQLIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1253 lr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~------Dg~I~Iwd~~g~~l~~l~ 1305 (1344)
+.+. +.+..+.... -+-+.|+|||.+|+|++. |+.++||+.+|..+..-.
T Consensus 343 v~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~ 398 (566)
T KOG2315|consen 343 VPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM 398 (566)
T ss_pred ccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence 9986 7888887654 456799999999998865 788999999998876543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=105.76 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=132.3
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeeeecCCCCC
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D---g~I~VWDl~~~~~~v~~i~~~~~~ 1176 (1344)
..|.++|... ...+. +..+...+.+ ..|++++..++.+..+ ..|++||+.++. .. .+.....
T Consensus 170 ~~l~~~d~~g--~~~~~------l~~~~~~~~~----p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~-~~~~~~~- 234 (417)
T TIGR02800 170 YELQVADYDG--ANPQT------ITRSREPILS----PAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-RE-KVASFPG- 234 (417)
T ss_pred ceEEEEcCCC--CCCEE------eecCCCceec----ccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EE-EeecCCC-
Confidence 3566777643 22222 2334434444 7899999999887533 579999998876 32 2332222
Q ss_pred CeeEEEEEcCCCCEEEE-EECCC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEE
Q 000700 1177 SISALTASQVHGGQLAA-GFVDG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQF 1250 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~s-Gs~DG--sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG--~I~I 1250 (1344)
.+.++ .++++|+.|+. .+.+| .|++||+.++. ..... .+........|+|+ |+.|+..+. +| .|.+
T Consensus 235 ~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~----~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 235 MNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLT----NGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred Cccce-EECCCCCEEEEEECCCCCccEEEEECCCCC-EEECC----CCCCCCCCEEECCC--CCEEEEEECCCCCceEEE
Confidence 25556 57889987764 44444 58888988765 22221 22344556789998 888776654 33 5777
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ---LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg---~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
+|+.++ + ...+..+........|+|++.+++.++.++ .|.+||+.+.....+.. . ......+|+|+
T Consensus 307 ~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------~~~~~p~~spd 375 (417)
T TIGR02800 307 MDADGG-E-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T--------GLDESPSFAPN 375 (417)
T ss_pred EECCCC-C-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C--------CCCCCceECCC
Confidence 888765 3 344554556678889999999998887765 78889976655554443 2 12345689999
Q ss_pred CCEEEEEECCC
Q 000700 1328 QVLLAAGSADA 1338 (1344)
Q Consensus 1328 g~~Lasgs~Dg 1338 (1344)
+++|+.++.++
T Consensus 376 g~~l~~~~~~~ 386 (417)
T TIGR02800 376 GRMILYATTRG 386 (417)
T ss_pred CCEEEEEEeCC
Confidence 99888877653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-05 Score=93.24 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=165.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC----------CCeEEEEe
Q 000700 1042 FSPIVVAADEN-----ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC----------NGNIRIWK 1106 (1344)
Q Consensus 1042 dg~~Latgs~d-----g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~----------DG~IrIWd 1106 (1344)
++..+.+.+.. ++|.|.|.++++.+.++.....+ ..+ + ++|++.|+++.. +..|.+||
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P----~~~-~--spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP----NPV-V--ASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC----cee-E--CCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 34444444433 89999999999999999876622 223 5 789998888765 78999999
Q ss_pred ccCCCCceeEEeeeecccCC-CCCccccceEEEEecCCCeEEEEE-C-CCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1107 DYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-E-VSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h-~~~V~s~~~~v~ws~~~~~Llagg-~-Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
..+.+...++. +... ...+-...-.+.++++|+++++.. . +..|.+.|+.+++ .+..+...... .-+ .
T Consensus 84 ~~t~~~~~~i~-----~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp~~~--~vy-~ 154 (352)
T TIGR02658 84 PQTHLPIADIE-----LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVPDCY--HIF-P 154 (352)
T ss_pred CccCcEEeEEc-----cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCCCCc--EEE-E
Confidence 97732222222 1110 000000011278899999999886 4 7899999999999 88888764322 211 1
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCee-eEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEECCCCc----
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDML-VCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK---- 1257 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr~~~~~-v~~~~~~~~h~~~I~-sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~---- 1257 (1344)
.+ ...+.+-|.||......+...... ......+.+-...+. .-.+.+. +|+++..... |.|.+.|+....
T Consensus 155 t~--e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~ 230 (352)
T TIGR02658 155 TA--NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFL 230 (352)
T ss_pred ec--CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceec
Confidence 12 222334456776666544432211 111111110000000 0034552 2777776666 999999965432
Q ss_pred cceEEEec-------CCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEe-CCCceEEEEeccCCccccccCCCe
Q 000700 1258 DAYLTIDA-------HRGSLSALAVHRHAPIIASGS----------AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSV 1319 (1344)
Q Consensus 1258 ~~v~tl~~-------h~~~Vtsla~spdg~~LasgS----------~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V 1319 (1344)
..+..+.. ..+.+.-++++++++.+.... ..+.|.++| .+++.+..+.. ...+
T Consensus 231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~~~ 301 (352)
T TIGR02658 231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GHEI 301 (352)
T ss_pred ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CCce
Confidence 22332221 223445599999988766632 125799999 45677777764 1578
Q ss_pred EEEEEecCCC-EEEEEE-CCCeEEEcC
Q 000700 1320 NCLTFHPYQV-LLAAGS-ADACVSIHS 1344 (1344)
Q Consensus 1320 ~slafspdg~-~Lasgs-~Dg~I~IWd 1344 (1344)
..++++||++ +|.+.+ .++.|.|+|
T Consensus 302 ~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 302 DSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 9999999999 777666 478888875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=112.16 Aligned_cols=238 Identities=12% Similarity=0.164 Sum_probs=168.4
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCcee--------EEeeeecccCCCCCccccceEEEEecCCCeEEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQK--------LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYA 1148 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~--------lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Lla 1148 (1344)
....++.| ..+.+++++||.||.++|..+.+...... -.+--+++.||...|.- +.|+.....|-+
T Consensus 15 vkL~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v----vTWNe~~QKLTt 88 (1189)
T KOG2041|consen 15 VKLHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV----VTWNENNQKLTT 88 (1189)
T ss_pred ceEEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE----EEeccccccccc
Confidence 47888999 68899999999999999999865321111 11123567889888876 999988888888
Q ss_pred EECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEE
Q 000700 1149 SGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1228 (1344)
Q Consensus 1149 gg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sv 1228 (1344)
+..+|.|.||-+-+++.+...+.....+-|.++ .|..+|..+.....||.|.+=.+....---+.+ + ......+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-sWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---k--g~~l~hv 162 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-SWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---K--GQLLAHV 162 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEE-EEcCCCcEEEEEEccCCEEEEeeccceecchhc---c--hheccce
Confidence 889999999999888733344455556668888 778899999999999999887776554111111 1 1335578
Q ss_pred EEecCCCCCEEEEEECCCcEEEEECCCCc------cceEEE----ecCCCCeEEEEE--------cCCCCEEEEEeCCCe
Q 000700 1229 SFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTI----DAHRGSLSALAV--------HRHAPIIASGSAKQL 1290 (1344)
Q Consensus 1229 a~sp~~~g~~Lasgs~DG~I~IWDlr~~~------~~v~tl----~~h~~~Vtsla~--------spdg~~LasgS~Dg~ 1290 (1344)
.|+++ .+.++.+-.+|.+.+||....- .+.... ......|..+.| -|+.+.||.+-.+|.
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 89999 8888888889999999976431 111111 111223445555 358889999999999
Q ss_pred EEEEeCCC-ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000700 1291 IKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1291 I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
+.|..... .....+.. .-.|....|+++|..||.+|.|
T Consensus 241 ~QiMR~eND~~Pvv~dt---------gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---------GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ehhhhhcCCCCCeEEec---------ccEeecceecCCCcEEEEccCc
Confidence 99887332 22222221 1468899999999999999874
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-06 Score=104.15 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=142.1
Q ss_pred cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CC--eEEEEeccCCCCceeEEeeeecccCCCCCc
Q 000700 1054 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NG--NIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130 (1344)
Q Consensus 1054 ~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG--~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1130 (1344)
.|.++|.+... .+.+..+. ..+.+..| ++||+.|+..+. ++ .|.+||+.+ ++...+. ...+ ..
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~---~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~t--g~~~~lt---~~~g---~~ 264 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSP---EPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYT--QVREKVT---SFPG---IN 264 (448)
T ss_pred EEEEEeCCCCC-ceEeecCC---CcccCceE--CCCCCEEEEEEecCCCcEEEEEECCC--CCeEEec---CCCC---Cc
Confidence 56666765433 23444444 57788889 789998887654 33 577778755 4433331 1222 12
Q ss_pred cccceEEEEecCCCeEEEE-ECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--eEEEEE
Q 000700 1131 RCSNVVVDWQQQSGYLYAS-GEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYD 1204 (1344)
Q Consensus 1131 ~s~~~~v~ws~~~~~Llag-g~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DG--sVrIwD 1204 (1344)
.. ..|+|++..|+.. ..+| .|.++|+.++. ...+..+.. ..... .++++|+.++..+. +| .|.++|
T Consensus 265 ~~----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~-~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GA----PRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA-IDTEP-SWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CC----eeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC-Cccce-EECCCCCEEEEEECCCCCceEEEEE
Confidence 23 7899999988765 4555 48888988776 344444332 24555 57889988776554 34 466667
Q ss_pred CCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEEEECCCCccceEEEecCCCCeEEEEEcCCCCE
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPI 1281 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG--~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~ 1281 (1344)
+.+++ ..... ..+ ......+|+|+ |+.|+..+. ++ .|.++|+.++ .. ..+.... ......|+|+|+.
T Consensus 337 l~~g~-~~~Lt--~~g--~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g-~~-~~lt~~~-~d~~ps~spdG~~ 406 (448)
T PRK04792 337 LASGK-VSRLT--FEG--EQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETG-AM-QVLTSTR-LDESPSVAPNGTM 406 (448)
T ss_pred CCCCC-EEEEe--cCC--CCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCC-Ce-EEccCCC-CCCCceECCCCCE
Confidence 77665 22221 111 23345789999 887776654 44 3556777765 32 3333221 2234579999997
Q ss_pred EEEEeCC-C--eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC
Q 000700 1282 IASGSAK-Q--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1282 LasgS~D-g--~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
|+..+.+ + .+.+++.+|.....+.. +. +.+...+|+|.
T Consensus 407 I~~~~~~~g~~~l~~~~~~G~~~~~l~~-~~-------g~~~~p~Wsp~ 447 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSIDGRFKARLPA-GQ-------GEVKSPAWSPF 447 (448)
T ss_pred EEEEEecCCceEEEEEECCCCceEECcC-CC-------CCcCCCccCCC
Confidence 7765443 3 37777888888777765 33 45677788873
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=114.47 Aligned_cols=287 Identities=15% Similarity=0.168 Sum_probs=190.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEE-DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t-g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
..++.++.++|.|+-+|.++.-| +.|-|+.. +..-.-+....+ -.|-++.|.+++...+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 46788999999999999998665 45556653 232222222221 357778886666667777776666777999865
Q ss_pred C-CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1110 Q-KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1110 ~-~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
. ....+++ +.+|...++. +.|++...-+++. +.|-.+..||+++....+..+..-... -+.+.+.-.+
T Consensus 101 ss~~aIef~-----lhghsraitd----~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~-asqVkwnyk~ 170 (1081)
T KOG0309|consen 101 SSSNAIEFV-----LHGHSRAITD----INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA-ASQVKWNYKD 170 (1081)
T ss_pred CCccceEEE-----EecCccceec----cccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc-CceeeecccC
Confidence 3 3344554 7899999998 8898887665554 689999999999876455444433332 4666454455
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR 1267 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~ 1267 (1344)
++.++ .+....|++||.|.+.......+ +|...|.+++|... ....+.+.+.||+|++||..+..+.-......+
T Consensus 171 p~vla-sshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~-~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 171 PNVLA-SSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRF-KYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cchhh-hccCCceEEEeccCCCcceEEec---ccceeeehHHHhhh-hhhhhcccCCCCceeeecccccccccceecccc
Confidence 55554 45567899999998876766554 46788999998765 456788999999999999986533222333345
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC-----------CceEEEEeccCCccccccCCCeEEEEEecC-------
Q 000700 1268 GSLSALAVHRHAPIIASG--SAKQLIKVFSLE-----------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPY------- 1327 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~Lasg--S~Dg~I~Iwd~~-----------g~~l~~l~~~h~~f~~~~~~~V~slafspd------- 1327 (1344)
.+|+.-.+-|-|.-.+.- -.+..+.+++.+ ...+.++.+ |+ ..|...-|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~-------D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HD-------DVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cc-------hHHHHHhhhhcccccCCC
Confidence 567777777765522221 112244444421 356778888 66 55555544221
Q ss_pred ---CCEEEEEECCCeEEEc
Q 000700 1328 ---QVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1328 ---g~~Lasgs~Dg~I~IW 1343 (1344)
.-.|+|-+.|.++++|
T Consensus 318 d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CccceeEEEeecCCceEee
Confidence 1369999999999999
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=107.90 Aligned_cols=205 Identities=14% Similarity=0.241 Sum_probs=148.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
-..++++.-.--|..++....|+-.|++.|..+..|.... +.++++.. ++...+|++|+.+|.|..||..... .
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~---~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ks-r 209 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS---GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKS-R 209 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccccccccccccc---ccceeeee--cCccceEEecccCceEEEecchhhh-h
Confidence 4456666544445555557788889999999999998877 78999998 5678899999999999999987622 2
Q ss_pred eeEEeeeecccCCCC-----CccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1114 QKLVTAFSSIQGHKP-----GVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~-----~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
...+..-..+..|.. .|++ +.|+.+|-.+.+|..+|.|.|||+++.+ ++..-......+|..+.|...++
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTa----l~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTA----LKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred heeeecccccCCCccccccCcceE----EEecCCceeEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccccCC
Confidence 222211122222322 2555 8898778889999999999999999988 65544444455788886655544
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
.--+.......++|||-.+++.... +.. ...+..+++-|+ +..+++|..++.+..|=+...
T Consensus 285 q~~v~S~Dk~~~kiWd~~~Gk~~as-iEp----t~~lND~C~~p~--sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECTGKPMAS-IEP----TSDLNDFCFVPG--SGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEecchHHhhhcccccCCceee-ccc----cCCcCceeeecC--CceEEEecCCCcceeEEcccc
Confidence 4444455567899999999984433 322 356999999999 889999999988888877654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-06 Score=101.71 Aligned_cols=242 Identities=13% Similarity=0.072 Sum_probs=139.8
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCE---EEEEECCCe--EEEEeccCCCCceeEEeeeecccCCC
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSL---LLVASCNGN--IRIWKDYDQKDKQKLVTAFSSIQGHK 1127 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~---L~tgs~DG~--IrIWdl~~~~~~~~lvs~~~~l~~h~ 1127 (1344)
..|.+.|.+.++. ..+.... ..+.+-.| +|||+. +++...+|. |.+.++.. +....++. +.+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~w--SPDG~~~~~~y~S~~~g~~~I~~~~l~~--g~~~~lt~---~~g-- 231 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPTW--MHIGSGFPYLYVSYKLGVPKIFLGSLEN--PAGKKILA---LQG-- 231 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccceE--ccCCCceEEEEEEccCCCceEEEEECCC--CCceEeec---CCC--
Confidence 4566667764433 3344333 45566688 789864 335555554 55556544 44443321 222
Q ss_pred CCccccceEEEEecCCCeEEEEEC-CC----eEEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCCCCEEEEEE-CCCeE
Q 000700 1128 PGVRCSNVVVDWQQQSGYLYASGE-VS----SIMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGSV 1200 (1344)
Q Consensus 1128 ~~V~s~~~~v~ws~~~~~Llagg~-Dg----~I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs-~DGsV 1200 (1344)
.... ..|+|+|..|+..++ +| .+..||+..+. .....+........... .++++|+.|+..+ .+|..
T Consensus 232 -~~~~----p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 232 -NQLM----PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred -Cccc----eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECCCCCc
Confidence 2222 789999999887653 22 34447766521 01222222221223455 6789999877665 46755
Q ss_pred EEE--ECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEECCCCccceEEEecCCCCeEEEEE
Q 000700 1201 RLY--DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYLTIDAHRGSLSALAV 1275 (1344)
Q Consensus 1201 rIw--Dlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D---G~I~IWDlr~~~~~v~tl~~h~~~Vtsla~ 1275 (1344)
.+| ++.........+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.++ +. ..+......+....|
T Consensus 306 ~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g-~~-~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATG-RD-YQLTTSPENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe---ccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCC-Ce-EEccCCCCCccceEE
Confidence 555 443211112222 122346678899999 8888766543 36999999876 33 334333445678999
Q ss_pred cCCCCEEEEEeC---CCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000700 1276 HRHAPIIASGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1276 spdg~~LasgS~---Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
+|+|+.|+..+. ...|.++|+++.....+.. .. +.+...+|+|..
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~-------g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS-------GEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC-------CcccCceecCCC
Confidence 999997765432 3568888987766655543 22 456677888753
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-05 Score=86.66 Aligned_cols=269 Identities=13% Similarity=0.227 Sum_probs=173.7
Q ss_pred CCcEEEEECCCC--cE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC---CCeEEEEeccCCCCceeEEeeeeccc
Q 000700 1052 NERIKIWNYEED--TL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC---NGNIRIWKDYDQKDKQKLVTAFSSIQ 1124 (1344)
Q Consensus 1052 dg~I~VWd~~tg--~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~---DG~IrIWdl~~~~~~~~lvs~~~~l~ 1124 (1344)
+..|.+|++++. +. +... ... +..+-|+| +++++.|.++.. +|.|-.|.+....|...++... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v-~~~---~nptyl~~--~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV-AEL---GNPTYLAV--NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLP 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhc-ccc---CCCceEEE--CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccC
Confidence 678999988732 21 1111 222 56788999 789999998865 4788888887655666665322 122
Q ss_pred CCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceee---eeecCCCC--------CC-eeEEEEEcCCCCEE
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMV---NPIPSSSD--------CS-ISALTASQVHGGQL 1191 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v---~~i~~~~~--------~~-VtsL~~~s~dg~~L 1191 (1344)
++.. . -++.++++.+++++. ..|.|.++-++..-... ..+. |.+ .+ +... -+.|+++++
T Consensus 88 g~~p--~----yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a-~~tP~~~~l 159 (346)
T COG2706 88 GSPP--C----YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSA-NFTPDGRYL 159 (346)
T ss_pred CCCC--e----EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeee-cCCCCCCccccCCcccee-eeCCCCCEE
Confidence 2221 2 378889999999996 67899999886532011 1111 111 11 3334 577899888
Q ss_pred EEEEC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEECCCCccceEEEecC---
Q 000700 1192 AAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH--- 1266 (1344)
Q Consensus 1192 ~sGs~-DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs-~DG~I~IWDlr~~~~~v~tl~~h--- 1266 (1344)
++..- --.|.+||+..+. +.......-.....-..|.|+|+ +++..+.+ -+++|.+|........+..++.+
T Consensus 160 ~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn--~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPN--GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEeecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCC--CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 87654 3469999998665 22211111133467889999999 88877666 48999999998743344444432
Q ss_pred ------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEeC--CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECC
Q 000700 1267 ------RGSLSALAVHRHAPIIASGSA-KQLIKVFSL--EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSAD 1337 (1344)
Q Consensus 1267 ------~~~Vtsla~spdg~~LasgS~-Dg~I~Iwd~--~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~D 1337 (1344)
......|.++++|++|.++.. ...|.+|.+ .+..+..+.. .. .+......+.|++.+++|++++.|
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~-~~----teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI-TP----TEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE-ec----cCCcCCccceeCCCCCEEEEEccC
Confidence 345678999999999988742 236788874 3444544443 22 122346889999999999999884
Q ss_pred -CeEEEc
Q 000700 1338 -ACVSIH 1343 (1344)
Q Consensus 1338 -g~I~IW 1343 (1344)
..|.+|
T Consensus 312 sd~i~vf 318 (346)
T COG2706 312 SDNITVF 318 (346)
T ss_pred CCcEEEE
Confidence 457665
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=105.24 Aligned_cols=259 Identities=19% Similarity=0.292 Sum_probs=196.0
Q ss_pred HhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhch---hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhc
Q 000700 437 EQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ---CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLL 506 (1344)
Q Consensus 437 ~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~---~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL 506 (1344)
+|+++.+.+-++-+..++|| |.+|-..+.|... .-++.|--.|.+.-.-+.-.....+..|..|.|++||
T Consensus 82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 57777777666666666676 7888888877532 2344444444443333333444446789999999999
Q ss_pred cCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCC-cchhHHHHhhchH
Q 000700 507 QTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH-RRGQEACIEAGLI 585 (1344)
Q Consensus 507 ~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~-~~gq~~~~~~~~~ 585 (1344)
+++..+++--+++-++.|...-+.|..-+++.+...-.+..|+.......+|. ++-+|+.||++- |.....-+ ..++
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~v-~~iL 239 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDVV-APIL 239 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHHH-HHHH
Confidence 99999999999999999999999999999999999999999987664334444 455788899986 66665543 4567
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcC
Q 000700 586 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 665 (1344)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 665 (1344)
.++..+|. ..+++|.+=+|-+|+.|-++.++.-++.++.++..+|..+|...++-|+..++-++|.++..
T Consensus 240 p~L~~ll~-------~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG--- 309 (514)
T KOG0166|consen 240 PALLRLLH-------STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG--- 309 (514)
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec---
Confidence 78888888 78999999999999999999999888899999999999999999999999999999997621
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhcc-CCChhhHHHHHHHHHHHHhh
Q 000700 666 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVVS-DGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~-D~sp~VR~e~~~~ls~~~~~ 718 (1344)
.+..-+.-+.......|..+.. ....-.|+|+.+.+|-+...
T Consensus 310 -----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 310 -----------SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred -----------cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 1112122244445555666555 55566999999999987754
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-07 Score=101.93 Aligned_cols=247 Identities=13% Similarity=0.192 Sum_probs=166.4
Q ss_pred cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCC
Q 000700 1064 TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS 1143 (1344)
Q Consensus 1064 ~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~ 1143 (1344)
..+..++++. ..+++... .+...-+++.+.|.++|||--.+......-+ ......++++ +.+..+.
T Consensus 15 ~ll~~~eG~~---d~vn~~~l--~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~----~~y~~e~ 80 (404)
T KOG1409|consen 15 ELLSKIEGSQ---DDVNAAIL--IPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSA----MEYVSES 80 (404)
T ss_pred hhhhhhcCch---hhhhhhee--ccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceE----eeeeccc
Confidence 3455667777 67777766 4566779999999999999865522211111 1122333444 7888888
Q ss_pred CeEEEEECCCeEEEEECC----CCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCC
Q 000700 1144 GYLYASGEVSSIMLWDLE----KEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1219 (1344)
Q Consensus 1144 ~~Llagg~Dg~I~VWDl~----~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~ 1219 (1344)
..|++|-..|++.-+.+. +.. ..+....|.. .|..+ .++.....+++.+.|..+.---.+.+..+-. + .+
T Consensus 81 ~~L~vg~~ngtvtefs~sedfnkm~-~~r~~~~h~~-~v~~~-if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~-Y-~~- 154 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSEDFNKMT-FLKDYLAHQA-RVSAI-VFSLTHEWVLSTGKDKQFAWHCTESGNRLGG-Y-NF- 154 (404)
T ss_pred eEEEEEEecceEEEEEhhhhhhhcc-hhhhhhhhhc-ceeeE-EecCCceeEEEeccccceEEEeeccCCcccc-e-Ee-
Confidence 999999999999888654 333 4445555554 48888 6666778888888888775444444432110 0 00
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC-ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1220 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH-KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1220 ~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~-~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
..+-+.+.+. -.+...|...|.|..-.+... -.++.++.+|.+.+++++|.+...++.+|..|..|.+||+-|
T Consensus 155 --~~~~t~~~~d----~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 155 --ETPASALQFD----ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred --eccCCCCcee----eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC
Confidence 0111111111 114455666666655544322 268899999999999999999999999999999999999766
Q ss_pred ceEE--EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1299 EQLG--TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1299 ~~l~--~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..-. .+.+ |...|..+..-+.-+.|.+++.||.|.+|+
T Consensus 229 ~~g~~~el~g--------h~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 229 RKGTAYELQG--------HNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred Ccceeeeecc--------chhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 5433 3333 347888898888889999999999999996
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-05 Score=96.12 Aligned_cols=260 Identities=15% Similarity=0.115 Sum_probs=157.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeee
Q 000700 1042 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1042 dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1121 (1344)
++..+++++.+|.+..+|.++|+.+....... .+.+... -.++.++.++.+|.+..||..+ ++..-. +.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~---v~~~~v~v~~~~g~l~a~d~~t--G~~~W~--~~ 172 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPL---VANGLVVVRTNDGRLTALDAAT--GERLWT--YS 172 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCE---EECCEEEEECCCCeEEEEEcCC--CceeeE--Ec
Confidence 46788888889999999999999887765433 2222111 1356777888899999999876 332211 00
Q ss_pred cccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CC------e-eEEEEEcCCCCEE
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CS------I-SALTASQVHGGQL 1191 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~---~~------V-tsL~~~s~dg~~L 1191 (1344)
............ .... .++.++++..+|.+..+|.++++ .+........ .. + .+. .. .++.+
T Consensus 173 -~~~~~~~~~~~~-sp~~--~~~~v~~~~~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p-~~--~~~~v 244 (377)
T TIGR03300 173 -RVTPALTLRGSA-SPVI--ADGGVLVGFAGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDP-VV--DGGQV 244 (377)
T ss_pred -cCCCceeecCCC-CCEE--ECCEEEEECCCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCcc-EE--ECCEE
Confidence 111000000000 0111 14578888888999999999887 5543321110 00 0 011 11 35678
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC-CCCe
Q 000700 1192 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSL 1270 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h-~~~V 1270 (1344)
++++.+|.+..||..+++.... .. . .......+ . +..++.++.||.|..+|..++ +.+...... ....
T Consensus 245 y~~~~~g~l~a~d~~tG~~~W~-~~-~----~~~~~p~~--~--~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVLWK-RD-A----SSYQGPAV--D--DNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQL 313 (377)
T ss_pred EEEEcCCEEEEEECCCCcEEEe-ec-c----CCccCceE--e--CCEEEEECCCCeEEEEECCCC-cEEEccccccCCcc
Confidence 8888999999999998873322 21 1 11122222 2 567888889999999999987 555444221 1222
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCe-EEEEEecCCCEEEEEECCCeEEEc
Q 000700 1271 SALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSV-NCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1271 tsla~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V-~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.+..+ .+..+++++.+|.|.++|. +|+.+..+.. +. ..+ .+.++. ++ .|+.++.||.|..|
T Consensus 314 ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~~-------~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-DG-------SGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CC-------CccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 22223 3568888999999999994 6888888775 33 122 222333 33 47788889998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.1e-06 Score=94.93 Aligned_cols=275 Identities=13% Similarity=0.143 Sum_probs=173.0
Q ss_pred CCeEEEEEcCCCCEEEEEEC---------------CCcEEEEECCCCcEEEEeeCCCCCCCCeE-EEEEEeeCCCCEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADE---------------NERIKIWNYEEDTLLNSFDNHDFPDKGIS-KLCLVNELDVSLLLV 1095 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~---------------dg~I~VWd~~tg~~l~~~~~h~~~~~~It-sL~f~ns~d~~~L~t 1095 (1344)
..|..+.|+|.+++|++-+. ++.+.|||..+|..+..+.....+. ... -+.| +.+..+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~--s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKF--SIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeee--eecchhhhh
Confidence 46889999999999998653 3359999999999999998766221 133 5667 556666654
Q ss_pred EECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC--eEEE-----EECCCeEEEEECCCCceeee
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG--YLYA-----SGEVSSIMLWDLEKEQQMVN 1168 (1344)
Q Consensus 1096 gs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~--~Lla-----gg~Dg~I~VWDl~~~~~~v~ 1168 (1344)
- ....+.|+++.. .... ..+..+. ...+.. ..|+|.++ .|+. .+..+.+++|.+..+. .+.
T Consensus 149 v-v~~sl~i~e~t~---n~~~-~p~~~lr--~~gi~d----FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~ 216 (561)
T COG5354 149 V-VGSSLYIHEITD---NIEE-HPFKNLR--PVGILD----FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLV 216 (561)
T ss_pred h-ccCeEEEEecCC---cccc-Cchhhcc--ccceee----EEecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eee
Confidence 4 233688999722 1111 0111121 122333 56666532 2222 2567889999988666 443
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEEE-----------ECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCC
Q 000700 1169 PIPSSSDCSISALTASQVHGGQLAAG-----------FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPA 1237 (1344)
Q Consensus 1169 ~i~~~~~~~VtsL~~~s~dg~~L~sG-----------s~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~ 1237 (1344)
+-.--.-+ =..+ .++..|++++.- .....+.+++++.....+.. +-.++|...+|.|. ++
T Consensus 217 tk~lfk~~-~~qL-kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~--S~ 287 (561)
T COG5354 217 TKNLFKVS-GVQL-KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----DLKDPVHDFTWEPL--SS 287 (561)
T ss_pred eeeeEeec-ccEE-EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----cccccceeeeeccc--CC
Confidence 32211111 1234 345556554431 22356888888855422221 22489999999998 55
Q ss_pred EEE--EEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEeCCCceEE--EEeccCCc
Q 000700 1238 KIV--SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFSLEGEQLG--TIRYHHPS 1310 (1344)
Q Consensus 1238 ~La--sgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~D---g~I~Iwd~~g~~l~--~l~~~h~~ 1310 (1344)
.++ +|-.+..+.++|++.. .... .....=..+.|+|++++++.++-| |.|-+||..|+.+. .+.+
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~N--l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---- 359 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRGN--LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---- 359 (561)
T ss_pred ceeEEecccccceeecccccc--eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec----
Confidence 544 4558889999999955 3322 334455678899999998887654 78999997665443 3444
Q ss_pred cccccCCCeEEEEEecCCCEEEEEEC------CCeEEEcC
Q 000700 1311 FMAQKIGSVNCLTFHPYQVLLAAGSA------DACVSIHS 1344 (1344)
Q Consensus 1311 f~~~~~~~V~slafspdg~~Lasgs~------Dg~I~IWd 1344 (1344)
...+-+.|+|++.++.+... |..|+||+
T Consensus 360 ------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 360 ------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred ------CCceEeeccCCceEEEecCCCcccccCcceEEEE
Confidence 34566789999998877643 78899985
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-05 Score=102.64 Aligned_cols=300 Identities=16% Similarity=0.163 Sum_probs=187.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEE----ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEE
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIW----NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VW----d~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIW 1105 (1344)
....|.++.+-++...++.+..+|.|.+. +..+. .+.....-. .+|.+++| +||+.+|+..+.+|++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd---~GI~a~~W--SPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVD---SGILAASW--SPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEc---CcEEEEEE--CCCcCEEEEEeCCCEEEEE
Confidence 34689999999999999999999999999 44432 222222223 68999999 8999999999999988775
Q ss_pred eccC-----------CCCceeEE--------eeeecccCC---------C------CC--ccccceEEEEecCCCeEEEE
Q 000700 1106 KDYD-----------QKDKQKLV--------TAFSSIQGH---------K------PG--VRCSNVVVDWQQQSGYLYAS 1149 (1344)
Q Consensus 1106 dl~~-----------~~~~~~lv--------s~~~~l~~h---------~------~~--V~s~~~~v~ws~~~~~Llag 1149 (1344)
.-.- ..+..+.+ +.|+.-.+. . +. ..+....++|..||.++++.
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 4210 01111111 111110000 0 00 11233568999999999988
Q ss_pred EC---C---CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCCeeeEeecCCCC
Q 000700 1150 GE---V---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---DGSVRLYDVRTPDMLVCSTRPHTQ 1220 (1344)
Q Consensus 1150 g~---D---g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~---DGsVrIwDlr~~~~~v~~~~~~~~ 1220 (1344)
+- . +.||||+.+ +. +........+--.++ .|.|.|+++++... ...|.+|....-+.-...++ ...
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l-~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~-~~~ 302 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGAL-SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR-FDP 302 (928)
T ss_pred EEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCc-cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC-CCC
Confidence 53 2 579999977 33 333332323323455 78899999988765 35677787554332222221 123
Q ss_pred CCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEecC-CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Q 000700 1221 QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH-RGSLSALAVHRHAP-IIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1221 h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h-~~~Vtsla~spdg~-~LasgS~Dg~I~Iwd~~ 1297 (1344)
....|..+.|+++ +..|+....|. |.+|-..+.. -..+.+... ...+..+.|||..+ .|..++.+|.+..++..
T Consensus 303 ~~~~v~~l~Wn~d--s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSD--SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCC--CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 3468999999999 99999987665 9999988763 122233322 23455699999655 46666666766655521
Q ss_pred -----C--------ceEEEEeccCCc----c------------ccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1298 -----G--------EQLGTIRYHHPS----F------------MAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1298 -----g--------~~l~~l~~~h~~----f------------~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+ ..+..+.+ ..- | .-.-..+|.+++|++++..+|+-..||.|.+|.
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEecCCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1 11222222 110 0 012346899999999998899999999999874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00013 Score=82.96 Aligned_cols=251 Identities=11% Similarity=0.178 Sum_probs=164.3
Q ss_pred CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CCeEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADE---NERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIW 1105 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~---dg~I~VWd~~t--g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIW 1105 (1344)
..++-|+|+|++++|.++.. +|.|..|.++. |+.. .+......+..-+.+++ ++++++|+++.. .|.|.++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPCYVSV--DEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCCCCCeEEEE--CCCCCEEEEEEccCceEEEE
Confidence 56899999999999888753 58888888874 4332 22222222244478888 789999999864 5889999
Q ss_pred eccCCCCceeEEeeeecccCCCCC----------ccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee--eecC
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPG----------VRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN--PIPS 1172 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~----------V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~--~i~~ 1172 (1344)
.+... +....... ...|... +.. ..+.|++.+|++.. ....|.+|++..+. ... ....
T Consensus 117 p~~~d-G~l~~~v~---~~~h~g~~p~~rQ~~~h~H~----a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v 187 (346)
T COG2706 117 PLQAD-GSLQPVVQ---VVKHTGSGPHERQESPHVHS----ANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEV 187 (346)
T ss_pred EcccC-Ccccccee---eeecCCCCCCccccCCccce----eeeCCCCCEEEEeecCCceEEEEEcccCc-ccccccccc
Confidence 98663 33222211 1112222 333 77889999999884 33459999998665 221 1111
Q ss_pred CCCCCeeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCCeeeEeecCCC------CCCCCeEEEEEecCCCCCEEEEEEC-
Q 000700 1173 SSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHT------QQVERVVGISFQPGLDPAKIVSASQ- 1244 (1344)
Q Consensus 1173 ~~~~~VtsL~~~s~dg~~L~sGs~-DGsVrIwDlr~~~~~v~~~~~~~------~h~~~I~sva~sp~~~g~~Lasgs~- 1244 (1344)
..+..-..| .++|++++....++ +++|-+|...........++.+. ....+...|+++++ |++|+++..
T Consensus 188 ~~G~GPRHi-~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d--GrFLYasNRg 264 (346)
T COG2706 188 KPGAGPRHI-VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD--GRFLYASNRG 264 (346)
T ss_pred CCCCCcceE-EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC--CCEEEEecCC
Confidence 233346788 78899998776665 89999999887422233322211 12457788999999 999988764
Q ss_pred CCcEEEEECCCCccceEE---EecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeCC
Q 000700 1245 AGDIQFLDIRNHKDAYLT---IDAHRGSLSALAVHRHAPIIASGSAK-QLIKVFSLE 1297 (1344)
Q Consensus 1245 DG~I~IWDlr~~~~~v~t---l~~h~~~Vtsla~spdg~~LasgS~D-g~I~Iwd~~ 1297 (1344)
...|.+|.+...+..+.. ...+...-+.+.+++++++|+++..+ ..|.+|..+
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 246888887755333322 22344457899999999988887664 468899853
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-06 Score=89.44 Aligned_cols=232 Identities=9% Similarity=-0.009 Sum_probs=149.9
Q ss_pred CCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee
Q 000700 1089 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1168 (1344)
Q Consensus 1089 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~ 1168 (1344)
...+|+.||..|...+|...+.++...+. ..+...|.- .-.+.-....+..++.|.++++.+++.+. ...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c------d~snn~v~~---~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~~ 152 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC------DVSNNDVTL---VKRYCDLKFPLNIASNDHTGKTMVVSGDS-NKF 152 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee------cccccchhh---hhhhcccccceeeccCCcceeEEEEecCc-ccc
Confidence 45789999999999999997644443332 122221111 00111123457778889999998887665 222
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000700 1169 PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD-MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1247 (1344)
Q Consensus 1169 ~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~-~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~ 1247 (1344)
...... -.+.++ ..++++.++++.+....|-.|.+.... ...++... .....=.+..|+.. ...+|++++||+
T Consensus 153 ~~h~~~-~~~ns~-~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a--~t~D~gF~~S~s~~--~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 153 AVHNQN-LTQNSL-HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA--PTSDHGFYNSFSEN--DLQFAVVFQDGT 226 (344)
T ss_pred eeeccc-cceeee-EEcCCCceEEEecCCCcceEEEeCCccceeeeeEec--ccCCCceeeeeccC--cceEEEEecCCc
Confidence 222211 125666 678899999999999999999887543 23332211 11234457788887 889999999999
Q ss_pred EEEEECCCCccceEEE----ecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeE
Q 000700 1248 IQFLDIRNHKDAYLTI----DAHRGSLSALAVHRHAP--IIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVN 1320 (1344)
Q Consensus 1248 I~IWDlr~~~~~v~tl----~~h~~~Vtsla~spdg~--~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~ 1320 (1344)
+.|||+|..+.+..+. ..|.+.++.+.|++.|. +|...-.-+.+.|.|+ ++.....+....+.+.......|.
T Consensus 227 ~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if 306 (344)
T KOG4532|consen 227 CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF 306 (344)
T ss_pred EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc
Confidence 9999999876555433 35889999999999776 4444445578999994 455555544412222233345588
Q ss_pred EEEEecCCCEEEEEEC
Q 000700 1321 CLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1321 slafspdg~~Lasgs~ 1336 (1344)
...|+.++.-..+.+.
T Consensus 307 gt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE 322 (344)
T ss_pred cccccCCCcccccccc
Confidence 8888888765555444
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-07 Score=97.83 Aligned_cols=212 Identities=15% Similarity=0.268 Sum_probs=124.9
Q ss_pred CCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-----CCCeEEEEECCCC
Q 000700 1089 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EVSSIMLWDLEKE 1163 (1344)
Q Consensus 1089 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-----~Dg~I~VWDl~~~ 1163 (1344)
.++-+++++.||.+.+++.+.. .. +......+....++.++-..+..+.+++ .-+..+.|+++..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~---~~-------~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD---LA-------LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cCCceEecCCCceEEEEechHH---Hh-------hhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc
Confidence 4677999999999999987431 00 1100111111111122222344444432 1244667776644
Q ss_pred ceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1164 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1164 ~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
+ ....-.. ....|++++..+...+++++|+.||.+.+||.|.....+..+ ..|+..|..+.|+|. ++..|++++
T Consensus 170 ~-t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l---~ahk~~i~eV~FHpk-~p~~Lft~s 243 (319)
T KOG4714|consen 170 K-TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL---KAHKAEIWEVHFHPK-NPEHLFTCS 243 (319)
T ss_pred c-ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH---HHhhhhhhheeccCC-CchheeEec
Confidence 4 1111111 122388886666667788899999999999999886555443 456799999999998 899999999
Q ss_pred CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEE
Q 000700 1244 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1323 (1344)
Q Consensus 1244 ~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~sla 1323 (1344)
.||.+.-||-.+. .+ +++++. ..+..| ++|......-. -++.+....-.|+++.
T Consensus 244 edGslw~wdas~~--~l-------------~i~~~~---------s~~s~W-LsgD~v~s~i~-i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 244 EDGSLWHWDASTT--FL-------------SISNQA---------SVISSW-LSGDPVKSRIE-ITSLLPSRSLSINSFD 297 (319)
T ss_pred CCCcEEEEcCCCc--eE-------------EecCcc---------cccccc-ccCCcccceEe-eeccccccceeeeeee
Confidence 9999999998742 11 122222 223445 33333332111 1122222334455554
Q ss_pred EecCCCEEEEEECCCeEEEcC
Q 000700 1324 FHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1324 fspdg~~Lasgs~Dg~I~IWd 1344 (1344)
. .|..|++|+.-+-|++++
T Consensus 298 V--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 V--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred c--cCceEEeccccceEEEec
Confidence 4 577899999888888864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-05 Score=103.70 Aligned_cols=287 Identities=15% Similarity=0.191 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECC---------------C--------CcEEEEeeCCCCC------------
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYE---------------E--------DTLLNSFDNHDFP------------ 1075 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~---------------t--------g~~l~~~~~h~~~------------ 1075 (1344)
+.+|.+++||||+..|+.++.+|++.+-+-+ . |+.-..|++...+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4789999999999999999989988876422 0 1111222221100
Q ss_pred ---------CCCeEEEEEEeeCCCCEEEEEEC---C---CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEe
Q 000700 1076 ---------DKGISKLCLVNELDVSLLLVASC---N---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ 1140 (1344)
Q Consensus 1076 ---------~~~ItsL~f~ns~d~~~L~tgs~---D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws 1140 (1344)
+..-..++| ..||.++++.+- . ..||||+-+ |. +. ....++..+.-.++|.
T Consensus 200 ~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re---G~--L~-------stSE~v~gLe~~l~Wr 265 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE---GE--LQ-------STSEPVDGLEGALSWR 265 (928)
T ss_pred ccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC---ce--EE-------eccccCCCccCCccCC
Confidence 112334556 889999999875 3 467788753 22 22 1122333333358999
Q ss_pred cCCCeEEEEE---CCCeEEEEECCCCceeeeeecC-CCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-eeEee
Q 000700 1141 QQSGYLYASG---EVSSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCST 1215 (1344)
Q Consensus 1141 ~~~~~Llagg---~Dg~I~VWDl~~~~~~v~~i~~-~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~-~v~~~ 1215 (1344)
|.|..|++.. +...|.+|....-..-...++. ..+..|..+ .|+.++..|+....|. |.+|-..+..= +.+.+
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei 343 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI 343 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE-EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE
Confidence 9998888774 3456777765433211223332 334458999 7889999999988666 99998876541 12222
Q ss_pred cCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECC----CCc-------cceEEEec-------------------
Q 000700 1216 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR----NHK-------DAYLTIDA------------------- 1265 (1344)
Q Consensus 1216 ~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr----~~~-------~~v~tl~~------------------- 1265 (1344)
.+ .....+..+.|+|. ....|..++.+|.+..++.. .+. ..+..+.|
T Consensus 344 -~~-~~~~~~~~~~Wdpe-~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 344 -RF-SSSESVNFVKWDPE-KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred -Ec-cCCCCCCceEECCC-CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 11 11234556999998 67778888887777665532 110 01222221
Q ss_pred ----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE---------EEeccC---CccccccCCCeEEEEEecCCC
Q 000700 1266 ----HRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG---------TIRYHH---PSFMAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1266 ----h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~---------~l~~~h---~~f~~~~~~~V~slafspdg~ 1329 (1344)
-...|.+++|++++..+|+-..||.|.+|....+... .+.. + ..........+..++|..+..
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL-DSMDISDSELPLGSLRQLAWLNDDT 499 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc-ccccccccccccccEEEEEEeCCCE
Confidence 1457899999999988999999999999984322111 1110 0 000011235678889988877
Q ss_pred EEEEEECC
Q 000700 1330 LLAAGSAD 1337 (1344)
Q Consensus 1330 ~Lasgs~D 1337 (1344)
+++....+
T Consensus 500 ~~~~~~~~ 507 (928)
T PF04762_consen 500 LLVLSDSD 507 (928)
T ss_pred EEEEEecC
Confidence 66666554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.5e-06 Score=94.80 Aligned_cols=274 Identities=12% Similarity=0.132 Sum_probs=173.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe----------
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN---------- 1101 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~---------- 1101 (1344)
-++..+.|||.|.+|++.. ...|.+|....+..+..+... .|..+.| +|++.+|.+=+..+.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~-----~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP-----DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cchhheeecCcchheehhh-ccceEEccccchhheeeeecC-----Cceeccc--CcccceeeeeccCCccChhhccCCc
Confidence 4688899999999999887 556899998887766666644 4888899 789999998765443
Q ss_pred -----EEEEeccCCCCceeEEeeeecccCCCCC--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC
Q 000700 1102 -----IRIWKDYDQKDKQKLVTAFSSIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1174 (1344)
Q Consensus 1102 -----IrIWdl~~~~~~~~lvs~~~~l~~h~~~--V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~ 1174 (1344)
+.+||... + .++.+ +.....+ .+- .+.|+-++.+.+-- ....+.|+++ +.......+..-.
T Consensus 105 ~~~n~~~vwd~~s--g--~iv~s---f~~~~q~~~~Wp---~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 105 TSKNNVFVWDIAS--G--MIVFS---FNGISQPYLGWP---VLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred cccCceeEEeccC--c--eeEee---ccccCCcccccc---eeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc
Confidence 88999855 2 33322 2222222 221 37888777765544 3346899997 3330222222222
Q ss_pred CCCeeEEEEEcCC--CCEEEE-----EECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----
Q 000700 1175 DCSISALTASQVH--GGQLAA-----GFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS---- 1243 (1344)
Q Consensus 1175 ~~~VtsL~~~s~d--g~~L~s-----Gs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs---- 1243 (1344)
...|... .++|. +..|+. +..++.+++|.+-... ......-++ ..=..+.|++. |+++++--
T Consensus 173 ~~gi~dF-sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk---~~~~qLkW~~~--g~~ll~l~~t~~ 245 (561)
T COG5354 173 PVGILDF-SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFK---VSGVQLKWQVL--GKYLLVLVMTHT 245 (561)
T ss_pred ccceeeE-EecCCCCCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEe---ecccEEEEecC--CceEEEEEEEee
Confidence 2236666 34444 333443 4567899999988555 222211111 22335788888 77665321
Q ss_pred -------CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEeCCCceEEEEeccCCccccc
Q 000700 1244 -------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG--SAKQLIKVFSLEGEQLGTIRYHHPSFMAQ 1314 (1344)
Q Consensus 1244 -------~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Lasg--S~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~ 1314 (1344)
....+.|++++.. .+.......++|...+|.|+++.+++. -.+..+.++|+.|+....+..
T Consensus 246 ksnKsyfgesnLyl~~~~e~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe-------- 315 (561)
T COG5354 246 KSNKSYFGESNLYLLRITER--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPE-------- 315 (561)
T ss_pred ecccceeccceEEEEeeccc--ccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCC--------
Confidence 1245888888854 233332557899999999998876654 467889999999885554433
Q ss_pred cCCCeEEEEEecCCCEEEEEECC---CeEEEcC
Q 000700 1315 KIGSVNCLTFHPYQVLLAAGSAD---ACVSIHS 1344 (1344)
Q Consensus 1315 ~~~~V~slafspdg~~Lasgs~D---g~I~IWd 1344 (1344)
..=+.+.|+|.+++++.++-| |.|-||+
T Consensus 316 --~~rNT~~fsp~~r~il~agF~nl~gni~i~~ 346 (561)
T COG5354 316 --QKRNTIFFSPHERYILFAGFDNLQGNIEIFD 346 (561)
T ss_pred --cccccccccCcccEEEEecCCccccceEEec
Confidence 344556778877777776654 5566654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=110.01 Aligned_cols=246 Identities=13% Similarity=0.214 Sum_probs=159.9
Q ss_pred eEEEEEcCCC--CEEEEEECCCcEEEEECCCC---cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEecc
Q 000700 1034 TKTALLQPFS--PIVVAADENERIKIWNYEED---TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1034 I~~l~fspdg--~~Latgs~dg~I~VWd~~tg---~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~ 1108 (1344)
+-.+.|++.. ++-++......-.||++... ..-..+.+|. ..|+++.|. .+....+++++.|-.+..||+.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghs---raitd~n~~-~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS---RAITDINFN-PQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCc---cceeccccC-CCCCcceeeccccccceeeecc
Confidence 4445555432 33333333555567876532 2333456777 899999994 4677899999999999999997
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg 1188 (1344)
......-....|+ .. +..+.|+-.++.+++.+..+.|++||.+.+..++..+++|... |.++.+.....
T Consensus 146 Sp~~p~ys~~~w~------s~----asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 146 SPHRPFYSTSSWR------SA----ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS-VNSIDFNRFKY 214 (1081)
T ss_pred CCCcceeeeeccc------cc----CceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee-eehHHHhhhhh
Confidence 6322221111111 11 1238999999999999999999999999887688888887655 77776555556
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEE---------EEECCCcEEEEECCCCccc
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV---------SASQAGDIQFLDIRNHKDA 1259 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~La---------sgs~DG~I~IWDlr~~~~~ 1259 (1344)
..+.+.+.||+|+.||............+ ...+|..-.+-|-+.|..+. ---.+..-..|+..++..+
T Consensus 215 s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred hhhcccCCCCceeeecccccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 77899999999999998754322111111 12445444555541122221 1112233344555555588
Q ss_pred eEEEecCCCCeEEEEEcCCC----------CEEEEEeCCCeEEEEeCC
Q 000700 1260 YLTIDAHRGSLSALAVHRHA----------PIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1260 v~tl~~h~~~Vtsla~spdg----------~~LasgS~Dg~I~Iwd~~ 1297 (1344)
+.+|.+|...|...-|-..+ -.|+|-|.|..+++|-+.
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 99999999888766664322 179999999999999864
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=93.49 Aligned_cols=264 Identities=17% Similarity=0.167 Sum_probs=158.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeee
Q 000700 1042 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1042 dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1121 (1344)
.+..+++++.+|.|..+|..+|+.+..+.... .-...... +++.+++++.+|.+..+|..+ ++..-.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~---- 130 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE---RLSGGVGA----DGGLVFVGTEKGEVIALDAED--GKELWR---- 130 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC---CcccceEE----cCCEEEEEcCCCEEEEEECCC--CcEeee----
Confidence 46788888889999999999999988776554 21122333 567888899999999999866 433211
Q ss_pred cccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC----eeEEEEEcCCCCEEEEEECC
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS----ISALTASQVHGGQLAAGFVD 1197 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~----VtsL~~~s~dg~~L~sGs~D 1197 (1344)
.-. ...+.+... . .++.+++++.+|.|..||.++++ .+-.+....... ..+.... +..++.+..+
T Consensus 131 ~~~--~~~~~~~p~---v--~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~ 199 (377)
T TIGR03300 131 AKL--SSEVLSPPL---V--ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAG 199 (377)
T ss_pred ecc--CceeecCCE---E--ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEEE---CCEEEEECCC
Confidence 111 112222111 1 36788888889999999999988 665554432110 0111111 3477888899
Q ss_pred CeEEEEECCCCCeeeEeecCCCCC--C--CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEE
Q 000700 1198 GSVRLYDVRTPDMLVCSTRPHTQQ--V--ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273 (1344)
Q Consensus 1198 GsVrIwDlr~~~~~v~~~~~~~~h--~--~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsl 1273 (1344)
|.+..+|.++++.... ....... . ..+..+.-+|...+..+++++.+|.+..||..++ +.+..... ......
T Consensus 200 g~v~ald~~tG~~~W~-~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~--~~~~~p 275 (377)
T TIGR03300 200 GKLVALDLQTGQPLWE-QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDA--SSYQGP 275 (377)
T ss_pred CEEEEEEccCCCEeee-eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeecc--CCccCc
Confidence 9999999998873322 1110000 0 0011111111111557888889999999999987 55554442 112222
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeC-CCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1274 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1274 a~spdg~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.+ .+..++.++.||.+..+|. +|+.+..... .. . ....+... .+..|++++.||.|.++|
T Consensus 276 ~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~---~---~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 276 AV--DDNRLYVTDADGVVVALDRRSGSELWKNDE-LK---Y---RQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eE--eCCEEEEECCCCeEEEEECCCCcEEEcccc-cc---C---CccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 22 4567777788999999995 5766654421 11 0 11222222 356788888889888774
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=103.69 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=156.1
Q ss_pred EEEEEEeeC-CCCEEEEEECCCeEEEEeccCCCCceeEEeeeec--ccCC---------CCCccccceEEEEecCCCeEE
Q 000700 1080 SKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS--IQGH---------KPGVRCSNVVVDWQQQSGYLY 1147 (1344)
Q Consensus 1080 tsL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~--l~~h---------~~~V~s~~~~v~ws~~~~~Ll 1147 (1344)
..+++ +. ++.++++-+.++.|++||... ..... +.. ..+. ..... -++++++++.|+
T Consensus 571 ~gvav--d~~~g~lyVaDs~n~rI~v~d~~G---~~i~~--ig~~g~~G~~dG~~~~a~f~~P~----GIavd~~gn~LY 639 (1057)
T PLN02919 571 GKLAI--DLLNNRLFISDSNHNRIVVTDLDG---NFIVQ--IGSTGEEGLRDGSFEDATFNRPQ----GLAYNAKKNLLY 639 (1057)
T ss_pred ceEEE--ECCCCeEEEEECCCCeEEEEeCCC---CEEEE--EccCCCcCCCCCchhccccCCCc----EEEEeCCCCEEE
Confidence 35666 44 456677777788999999743 21111 000 0000 01122 378888888888
Q ss_pred EEE-CCCeEEEEECCCCceeeeeecCCC----------------CCCeeEEEEEcC-CCCEEEEEECCCeEEEEECCCCC
Q 000700 1148 ASG-EVSSIMLWDLEKEQQMVNPIPSSS----------------DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPD 1209 (1344)
Q Consensus 1148 agg-~Dg~I~VWDl~~~~~~v~~i~~~~----------------~~~VtsL~~~s~-dg~~L~sGs~DGsVrIwDlr~~~ 1209 (1344)
++. ..+.|+++|..++. +.++.+.. -..-..+ .+++ ++.++++.+.++.|++||..++.
T Consensus 640 VaDt~n~~Ir~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 775 56789999988765 44443210 0113466 4455 67778888889999999987765
Q ss_pred eeeEeecC------CCC------CCCCeEEEEEecCCCCC-EEEEEECCCcEEEEECCCCccceEE------------Ee
Q 000700 1210 MLVCSTRP------HTQ------QVERVVGISFQPGLDPA-KIVSASQAGDIQFLDIRNHKDAYLT------------ID 1264 (1344)
Q Consensus 1210 ~~v~~~~~------~~~------h~~~I~sva~sp~~~g~-~Lasgs~DG~I~IWDlr~~~~~v~t------------l~ 1264 (1344)
. ..+.. ..+ .-.....++++|+ +. ++++.+.++.|++||+.++...+.. +-
T Consensus 717 v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 717 T--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred E--EEEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 2 11110 001 1134567999998 66 5566667899999999875311110 00
Q ss_pred cC--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCC--ccc-----cccCCCeEEEEEecCCC
Q 000700 1265 AH--------RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHP--SFM-----AQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1265 ~h--------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~--~f~-----~~~~~~V~slafspdg~ 1329 (1344)
.+ -....+++++++|.++++-+.++.|++||..+..+..+.+ .. ++. .........++++++|+
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred CCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 00 1124688999999999999999999999987766666554 21 111 12234678999999999
Q ss_pred EEEEEECCCeEEEcC
Q 000700 1330 LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~IWd 1344 (1344)
++++-+.+++|++||
T Consensus 872 lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 872 LFVADTNNSLIRYLD 886 (1057)
T ss_pred EEEEECCCCEEEEEE
Confidence 888888899999986
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-05 Score=91.95 Aligned_cols=223 Identities=16% Similarity=0.151 Sum_probs=144.9
Q ss_pred CCCCEEEEEECCCeEEEEeccCCCCceeEEe-eeecc--cCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc
Q 000700 1088 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVT-AFSSI--QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ 1164 (1344)
Q Consensus 1088 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs-~~~~l--~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~ 1164 (1344)
.||..++- +..|.|.+||..+. +.+... ..... ......+.-..+.-.|+..++.+++--.-|...+.+...+-
T Consensus 276 sDGkrIvF-q~~GdIylydP~td--~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETD--SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcC--cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 46666554 35577999998762 221110 00000 00111111111112244445555554445667777665554
Q ss_pred eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1165 QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1165 ~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG-sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
. ++..+...|.-. ....+++-++.|..|| .+-+||.++++ ..+....+ +.|.++..+++ |++++.+.
T Consensus 353 -~---iqv~~~~~VrY~-r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~l----g~I~av~vs~d--GK~~vvaN 420 (668)
T COG4946 353 -S---IQVGKKGGVRYR-RIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDL----GNIEAVKVSPD--GKKVVVAN 420 (668)
T ss_pred -e---EEcCCCCceEEE-EEccCCcceEEeccCCceEEEEecCCce-EEEeeCCc----cceEEEEEcCC--CcEEEEEc
Confidence 2 222233336665 4566777899999999 89999999987 44333333 78999999999 99999999
Q ss_pred CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEeCCCceEEEEeccCCccccccCCCe
Q 000700 1244 QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK----QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1319 (1344)
Q Consensus 1244 ~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~D----g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V 1319 (1344)
....+.+.|+.++ .....-+...+-|+.++|||+++++|-+--+ +.|++||+.|..+..+.. .. +.=
T Consensus 421 dr~el~vididng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t-------a~D 491 (668)
T COG4946 421 DRFELWVIDIDNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT-------AYD 491 (668)
T ss_pred CceEEEEEEecCC-CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc-------ccc
Confidence 9999999999998 4444444556789999999999999987544 579999998877766654 22 334
Q ss_pred EEEEEecCCCEEEEE
Q 000700 1320 NCLTFHPYQVLLAAG 1334 (1344)
Q Consensus 1320 ~slafspdg~~Lasg 1334 (1344)
.+-+|.|++++|.--
T Consensus 492 fsPaFD~d~ryLYfL 506 (668)
T COG4946 492 FSPAFDPDGRYLYFL 506 (668)
T ss_pred cCcccCCCCcEEEEE
Confidence 566888888876543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-05 Score=98.08 Aligned_cols=215 Identities=14% Similarity=0.104 Sum_probs=132.8
Q ss_pred CCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEE-EEECCC--eEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADEN---ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNG--NIRIW 1105 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~d---g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~-tgs~DG--~IrIW 1105 (1344)
..+....|+|||+.|+..+.+ ..|.+||+++++... +.... +.+....| ++||+.|+ +.+.+| .|.+|
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~---g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE---GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC---CCcCCeEE--CCCCCEEEEEEccCCCceEEEE
Confidence 457888999999998876533 368889998886543 22222 33456778 78998877 444555 46777
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-D--g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
|+.+ +.... +..+...... ..|++++..++..++ + ..|.++|+.+++ .. .+...... ....
T Consensus 273 d~~~--~~~~~------lt~~~~~~~~----~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~-~lt~~~~~-~~~~- 336 (430)
T PRK00178 273 DLAS--RQLSR------VTNHPAIDTE----PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AE-RVTFVGNY-NARP- 336 (430)
T ss_pred ECCC--CCeEE------cccCCCCcCC----eEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCC-ccce-
Confidence 7755 33222 2333333333 789999998877753 3 358888887776 32 22221111 2233
Q ss_pred EEcCCCCEEEEEECC-C--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-C--cEEEEECCCC
Q 000700 1183 ASQVHGGQLAAGFVD-G--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-G--DIQFLDIRNH 1256 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~D-G--sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D-G--~I~IWDlr~~ 1256 (1344)
.++++|+.++....+ | .|.+||+.+++ . +.+.. . .......|+|+ |+.++..+.+ | .+.++++..
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~-~~lt~-~---~~~~~p~~spd--g~~i~~~~~~~g~~~l~~~~~~g- 407 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGS-V-RILTD-T---SLDESPSVAPN--GTMLIYATRQQGRGVLMLVSING- 407 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCC-E-EEccC-C---CCCCCceECCC--CCEEEEEEecCCceEEEEEECCC-
Confidence 578899998877653 3 58889998776 2 22211 1 12225689999 8887766543 3 466667753
Q ss_pred ccceEEEecCCCCeEEEEEcCC
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRH 1278 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spd 1278 (1344)
.....+..+.+.+...+|+|.
T Consensus 408 -~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 -RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CceEECcCCCCCcCCCccCCC
Confidence 344455555666777777763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00023 Score=83.80 Aligned_cols=252 Identities=10% Similarity=0.116 Sum_probs=147.0
Q ss_pred CCeEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCcEEEEeeCCCCC----CCCeEEEEEEeeCCCCEEEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADE----------NERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~----------dg~I~VWd~~tg~~l~~~~~h~~~----~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
..+..+ ++||++.|.++.. ++.|.|||..+++.+..+.....+ +..-..+++ ++||++|++..
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l--s~dgk~l~V~n 123 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL--TPDNKTLLFYQ 123 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE--CCCCCEEEEec
Confidence 345555 9999998777654 789999999999999988754311 122335666 78999999876
Q ss_pred -C-CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecC-C
Q 000700 1098 -C-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPS-S 1173 (1344)
Q Consensus 1098 -~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~-~v~~i~~-~ 1173 (1344)
. +..|.+.|+.. ++. +.... ..+ | ......+ ....++-+.||......+....+ .....+. +
T Consensus 124 ~~p~~~V~VvD~~~--~kv--v~ei~-vp~------~-~~vy~t~--e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 124 FSPSPAVGVVDLEG--KAF--VRMMD-VPD------C-YHIFPTA--NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred CCCCCEEEEEECCC--CcE--EEEEe-CCC------C-cEEEEec--CCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 3 68999999966 222 11111 111 0 0011111 11111223333333322222110 1111110 0
Q ss_pred C-CCCeeEE-EEEcCCCCEEEEEECCCeEEEEECCCCCe----eeEeecCC----CCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1174 S-DCSISAL-TASQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPH----TQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1174 ~-~~~VtsL-~~~s~dg~~L~sGs~DGsVrIwDlr~~~~----~v~~~~~~----~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
. ..++..= .+...+|.++...+. |.|.+.|+..... ........ .-..+.+.-++++++ ++.+++..
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g~~lyV~~ 266 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--RDRIYLLA 266 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC--CCEEEEEe
Confidence 0 0000000 123447777777776 9999999654331 11111100 012344555999999 77776642
Q ss_pred ----------CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEEEEe-CCCeEEEEe-CCCceEEEEe
Q 000700 1244 ----------QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGS-AKQLIKVFS-LEGEQLGTIR 1305 (1344)
Q Consensus 1244 ----------~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~LasgS-~Dg~I~Iwd-~~g~~l~~l~ 1305 (1344)
..+.|.++|..+. +.+..+.. ...+..++++|+++ .|++.. .++.|.|+| .+++.+.++.
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred cCCccccccCCCCEEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 1247999999988 77777764 45789999999999 777665 578899999 4677777773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=97.28 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=129.0
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEE-EECCCe--EEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADE-NE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGN--IRIW 1105 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~-dg--~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~t-gs~DG~--IrIW 1105 (1344)
..+....|+|||+.|+..+. ++ .|.+||..+++... +.... +......| ++||+.|+. .+.+|. |.+|
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~---g~~~~~~w--SPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP---GINGAPRF--SPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC---CCcCCeeE--CCCCCEEEEEEeCCCCeEEEEE
Confidence 45678899999998887653 33 58888998876432 22222 23346678 789997764 566776 5555
Q ss_pred eccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-C--CeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V--SSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1106 dl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-D--g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
|+.+ +..+. +..+...... ..|++++..++..+. + ..|.++|+.+++ . ..+...... ....
T Consensus 292 dl~t--g~~~~------lt~~~~~~~~----p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~-~~Lt~~g~~-~~~~- 355 (448)
T PRK04792 292 DIAT--KALTR------ITRHRAIDTE----PSWHPDGKSLIFTSERGGKPQIYRVNLASGK-V-SRLTFEGEQ-NLGG- 355 (448)
T ss_pred ECCC--CCeEE------CccCCCCccc----eEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEEecCCCC-CcCe-
Confidence 6544 33222 3333333333 789999998877653 3 357777887766 3 333221111 2334
Q ss_pred EEcCCCCEEEEEEC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CCc--EEEEECCCC
Q 000700 1183 ASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGD--IQFLDIRNH 1256 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~-DG--sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG~--I~IWDlr~~ 1256 (1344)
.++++|+.++..+. ++ .|.++|+.+++ .. .+... .......|+|+ |+.|+..+. +|. +.++|.. +
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~-~lt~~----~~d~~ps~spd--G~~I~~~~~~~g~~~l~~~~~~-G 426 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGA-MQ-VLTST----RLDESPSVAPN--GTMVIYSTTYQGKQVLAAVSID-G 426 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCC-eE-EccCC----CCCCCceECCC--CCEEEEEEecCCceEEEEEECC-C
Confidence 56889988877655 34 45567877765 22 22111 11224579999 777665554 443 6677764 3
Q ss_pred ccceEEEecCCCCeEEEEEcC
Q 000700 1257 KDAYLTIDAHRGSLSALAVHR 1277 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~sp 1277 (1344)
.....+..+.+.+...+|+|
T Consensus 427 -~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 427 -RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CceEECcCCCCCcCCCccCC
Confidence 45566666666777888887
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-05 Score=99.55 Aligned_cols=255 Identities=14% Similarity=0.133 Sum_probs=156.1
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-----------CCCeEEEEEEeeCCCCEEEEEE-CC
Q 000700 1033 GTKTALLQPFS-PIVVAADENERIKIWNYEEDTLLNSFDNHDFP-----------DKGISKLCLVNELDVSLLLVAS-CN 1099 (1344)
Q Consensus 1033 ~I~~l~fspdg-~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~-----------~~~ItsL~f~ns~d~~~L~tgs-~D 1099 (1344)
-+..+++++.+ .+.++-..++.|++||.. |+.+..+.+.... -.....+++ .++++.|+++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCC
Confidence 34678898764 455555678889999976 5555544431100 023567888 56777666654 45
Q ss_pred CeEEEEeccCCCCceeEEeeee----cccCCCC---CccccceEEEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeec
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFS----SIQGHKP---GVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIP 1171 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~----~l~~h~~---~V~s~~~~v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~ 1171 (1344)
+.|+++|..+ +....+.... ...+... ........++++++++.++++ +.++.|++||..++. +..+.
T Consensus 646 ~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~ 721 (1057)
T PLN02919 646 HALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFS 721 (1057)
T ss_pred ceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEe
Confidence 7899998755 2222110000 0000000 000011237888877777666 577899999988765 22222
Q ss_pred CCC--------------CCCeeEEEEEcCCCC-EEEEEECCCeEEEEECCCCCeeeEee---------cCCCC-------
Q 000700 1172 SSS--------------DCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCST---------RPHTQ------- 1220 (1344)
Q Consensus 1172 ~~~--------------~~~VtsL~~~s~dg~-~L~sGs~DGsVrIwDlr~~~~~v~~~---------~~~~~------- 1220 (1344)
+.. -.....| .++++++ ++++.+.++.|++||+.++......- ..+..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred cCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 110 0123557 5667776 66677778999999998765221110 00000
Q ss_pred -CCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC--------------CCCeEEEEEcCCCCEEEEE
Q 000700 1221 -QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--------------RGSLSALAVHRHAPIIASG 1285 (1344)
Q Consensus 1221 -h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h--------------~~~Vtsla~spdg~~Lasg 1285 (1344)
.-....+++++++ |..+++-+.++.|++||..++ .. .++.+. -.....++++++|+++++-
T Consensus 801 ~~l~~P~Gvavd~d--G~LYVADs~N~rIrviD~~tg-~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKD--GQIYVADSYNHKIKKLDPATK-RV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCC--CcEEEEECCCCEEEEEECCCC-eE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0123458899998 888999999999999999865 33 233221 1246789999999999999
Q ss_pred eCCCeEEEEeCCCc
Q 000700 1286 SAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1286 S~Dg~I~Iwd~~g~ 1299 (1344)
+.++.|++||+...
T Consensus 877 t~Nn~Irvid~~~~ 890 (1057)
T PLN02919 877 TNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEEECCCC
Confidence 99999999997543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.1e-05 Score=92.90 Aligned_cols=190 Identities=15% Similarity=0.049 Sum_probs=114.6
Q ss_pred EEEecCCCeEE---EEECC--CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC----eEEEEECC
Q 000700 1137 VDWQQQSGYLY---ASGEV--SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG----SVRLYDVR 1206 (1344)
Q Consensus 1137 v~ws~~~~~Ll---agg~D--g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DG----sVrIwDlr 1206 (1344)
-.|+|+|..++ ++..+ ..|.+.|+.++. .. .+...... .... .++|||+.|+..+. +| .+..||+.
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~-~lt~~~g~-~~~p-~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GK-KILALQGN-QLMP-TFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCC-ce-EeecCCCC-ccce-EECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 68999987532 44333 468888988776 22 22221121 3344 67899988876553 23 34446766
Q ss_pred CCC--eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE-CCCcEEEEE--CCCCccceEEEecCCCCeEEEEEcCCCCE
Q 000700 1207 TPD--MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLD--IRNHKDAYLTIDAHRGSLSALAVHRHAPI 1281 (1344)
Q Consensus 1207 ~~~--~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs-~DG~I~IWD--lr~~~~~v~tl~~h~~~Vtsla~spdg~~ 1281 (1344)
.+. ...+... ++.......+|+|+ |+.|+..+ .+|...+|. +...+.....+..+...+....|+|+|+.
T Consensus 266 ~g~~g~~~~lt~---~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLN---EAFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeec---CCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 431 1222221 11233457899999 88777665 467655554 43222234445545556788999999998
Q ss_pred EEEEeCC---CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-C--CeEEEc
Q 000700 1282 IASGSAK---QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-D--ACVSIH 1343 (1344)
Q Consensus 1282 LasgS~D---g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~-D--g~I~IW 1343 (1344)
|+..+.+ ..|.+||..+.....+.. .. ..+....|+|+|++|+..+. + +.|.+|
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTT-SP-------ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccC-CC-------CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 8876543 468999987666666553 22 34677899999988775443 2 345444
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9e-07 Score=102.55 Aligned_cols=281 Identities=15% Similarity=0.307 Sum_probs=179.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-------CcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCe
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEE-------DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGN 1101 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~t-------g~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~ 1101 (1344)
.|...|..+.--.+++-+++++.|.+|++|.++. ..+..+++.|. .+|.++.|. .+-.+++ +.||.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---k~i~~igfL--~~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---KPIHDIGFL--ADLRSIA--SCDGG 805 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---Ccccceeee--eccceee--eccCc
Confidence 3456777777767788899999999999998763 23566788898 899999995 3444544 56889
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEec-CCCeEEEE-ECCCeEEEEECCCCceeeeeecCC----CC
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQ-QSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSS----SD 1175 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~-~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~----~~ 1175 (1344)
|.+||... +.......+..-.+....|.+ ... +...++++ +...+|+++|.+... .+..++.. .+
T Consensus 806 iHlWDPFi--gr~Laq~~dapk~~a~~~ikc------l~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 806 IHLWDPFI--GRLLAQMEDAPKEGAGGNIKC------LENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPN 876 (1034)
T ss_pred ceeecccc--cchhHhhhcCcccCCCceeEe------cccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCCCc
Confidence 99999855 221100000001111112222 222 33444555 467899999999877 55555422 22
Q ss_pred CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE-EECC
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF-LDIR 1254 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~I-WDlr 1254 (1344)
..+.++ ...+.|+.+++|-.+|.|.+.|.|+++ .+..|+... .....++- |. .+.++....|.++.+ |..-
T Consensus 877 a~~R~i-aVa~~GN~lAa~LSnGci~~LDaR~G~-vINswrpme---cdllqlaa-ps--dq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 877 ALTRAI-AVADKGNKLAAALSNGCIAILDARNGK-VINSWRPME---CDLLQLAA-PS--DQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred hheeEE-EeccCcchhhHHhcCCcEEEEecCCCc-eeccCCccc---chhhhhcC-ch--hHHHHhhcccceeEeeehhc
Confidence 347777 667889999999999999999999998 666666553 23333332 44 567788888888888 8766
Q ss_pred CCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----ceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000700 1255 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-----EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g-----~~l~~l~~~h~~f~~~~~~~V~slafspdg~ 1329 (1344)
++ ....+.+....+.. -...-|+-+++......+.||--.+ ..+..++. . .| .+..++++--|-+.
T Consensus 949 dg-imh~q~kpppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~-d-~f----~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 949 DG-IMHLQDKPPPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRP-D-EF----PGTLTALAPLPLNC 1019 (1034)
T ss_pred CC-eeeeccCCCCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccc-c-cc----CCccceeeeccccc
Confidence 55 22223322221111 1122466777777777788886332 22333332 1 12 36778888888887
Q ss_pred EEEEEECCCeEEE
Q 000700 1330 LLAAGSADACVSI 1342 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~I 1342 (1344)
-+..|+..|.|.+
T Consensus 1020 afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 AFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhccCCCCceee
Confidence 7888888888876
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.3e-06 Score=91.08 Aligned_cols=256 Identities=16% Similarity=0.205 Sum_probs=158.7
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCC-ceeEEeeeecccCCCCCc--------cccceEEEEecCC--Ce
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKD-KQKLVTAFSSIQGHKPGV--------RCSNVVVDWQQQS--GY 1145 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~-~~~lvs~~~~l~~h~~~V--------~s~~~~v~ws~~~--~~ 1145 (1344)
..|+++.| ...|.+|++|...|.|.+|.-....+ +.+.. ..+++|.... ..-...+.|-.++ ..
T Consensus 27 d~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~---teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFF---TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEe--ccccceEeecCCCceEEEeecccccccchhhh---hhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 57999999 77899999999999999997654221 11222 2344443321 1111126675544 46
Q ss_pred EEEEECCCeEEEEECCCCc------------------ee------------------ee-----eecCCCCCCeeEEEEE
Q 000700 1146 LYASGEVSSIMLWDLEKEQ------------------QM------------------VN-----PIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~------------------~~------------------v~-----~i~~~~~~~VtsL~~~ 1184 (1344)
++..+.|++|++|.+.... .+ +. .....+..-|.++ .+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi-S~ 180 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI-SF 180 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee-ee
Confidence 8888999999999876441 00 00 0001112225566 44
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCC-----CCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccc
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ-----VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA 1259 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h-----~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~ 1259 (1344)
..+...+++ ..|=.|.+|++.-........ ..+.| ..-|++..|+|. ....+.-.+..|.|++-|+|...-+
T Consensus 181 NsD~et~lS-aDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 181 NSDKETLLS-ADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred cCchheeee-ccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHh-HcceEEEecCCCcEEehhhhhhhhc
Confidence 455555555 457789999887555333333 12222 245889999998 6777888888999999999954211
Q ss_pred e---E----EE--------ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe--CCCceEEEEeccCCcccc--------c
Q 000700 1260 Y---L----TI--------DAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMA--------Q 1314 (1344)
Q Consensus 1260 v---~----tl--------~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd--~~g~~l~~l~~~h~~f~~--------~ 1314 (1344)
. + ++ .+--..|..+.|+++|+++++-+. -+|+||| +...++.++.- |...+. .
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnD 335 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYEND 335 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech-HHHHHHHHHhhhhcc
Confidence 1 1 11 112346888999999999998765 5899999 45677887765 543211 1
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1315 KIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1315 ~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
..-.-..+.|+-|.+.+.+|+..+..-||
T Consensus 336 aifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 336 AIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ceeeeEEEEecCCcccccccccccceeee
Confidence 11223457888888888888766554443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.3e-05 Score=87.22 Aligned_cols=277 Identities=14% Similarity=0.168 Sum_probs=170.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-----------CeE
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----------GNI 1102 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----------G~I 1102 (1344)
-+-+.|||-|.||++--. ..|.+|--++-..++.|. |. .|.-+.| +|...||+|-+.. ..+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp----~Vq~idf--SP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HP----GVQFIDF--SPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CC----Cceeeec--CCccceEEEecCCccccCcccCCCceE
Confidence 457889999999999884 458899766555666554 33 5888899 7899999996531 478
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
+|||+.+ |. +..+|..+. ....++. .+.|+.++.+++.-.. ..|.||+..+-. .+ ..+.-.-+.|...
T Consensus 285 ~IWDI~t--G~--lkrsF~~~~-~~~~~WP---~frWS~DdKy~Arm~~-~sisIyEtpsf~-ll-d~Kslki~gIr~F- 352 (698)
T KOG2314|consen 285 IIWDIAT--GL--LKRSFPVIK-SPYLKWP---IFRWSHDDKYFARMTG-NSISIYETPSFM-LL-DKKSLKISGIRDF- 352 (698)
T ss_pred EEEEccc--cc--hhcceeccC-CCccccc---eEEeccCCceeEEecc-ceEEEEecCcee-ee-cccccCCccccCc-
Confidence 9999977 32 222233332 2233344 3899999988887766 459999877644 22 2222222237777
Q ss_pred EEcCCCCEEEEEECC-----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE----------CCCc
Q 000700 1183 ASQVHGGQLAAGFVD-----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS----------QAGD 1247 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~D-----GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs----------~DG~ 1247 (1344)
.++|.+++|+-=... ..+.+-.+-+.+ .++....+ .-.=..+.|+.. |.+|+.-- .-..
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlf---nVsDckLhWQk~--gdyLcvkvdR~tK~~~~g~f~n 426 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLF---NVSDCKLHWQKS--GDYLCVKVDRHTKSKVKGQFSN 426 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccce---eeeccEEEeccC--CcEEEEEEEeeccccccceEee
Confidence 566777766643221 234454444443 22222111 122234677776 77776432 1223
Q ss_pred EEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCC--CceEEEEeccCCccccccCCCeEEE
Q 000700 1248 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSA---KQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCL 1322 (1344)
Q Consensus 1248 I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~---Dg~I~Iwd~~--g~~l~~l~~~h~~f~~~~~~~V~sl 1322 (1344)
+.|+.++...-++..+. -...|-..+|-|+|.-+++-+. ..++.+|.+. +....-++. -+ ....+.+
T Consensus 427 ~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~-~d------k~~~N~v 498 (698)
T KOG2314|consen 427 LEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE-LD------KKFANTV 498 (698)
T ss_pred EEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh-hc------ccccceE
Confidence 67788876655555554 3567899999999997776543 3568888754 221111111 11 1456789
Q ss_pred EEecCCCEEEEEEC---CCeEEEcC
Q 000700 1323 TFHPYQVLLAAGSA---DACVSIHS 1344 (1344)
Q Consensus 1323 afspdg~~Lasgs~---Dg~I~IWd 1344 (1344)
.|+|.|++++.++- .|.+.+||
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEe
Confidence 99999998887754 56666664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=103.76 Aligned_cols=272 Identities=14% Similarity=0.142 Sum_probs=172.7
Q ss_pred cccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC------
Q 000700 1026 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------ 1099 (1344)
Q Consensus 1026 Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------ 1099 (1344)
|.....+.|.++.|.+....+..|+..|.+.-+-....+....|+.|.. ..|..+.- -...+.+.+..
T Consensus 49 ~~~~~~G~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~--~~v~~~~~----~~~~i~~ls~~alr~~~ 122 (1118)
T KOG1275|consen 49 SVGASYGTVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSI--DGVRRIEP----TESGIFTLSKTALRATT 122 (1118)
T ss_pred eeccccccccccccCchHHhheecccCCceeeeecccccceEEEEEecc--chhhhhhh----hhhhheeeeHHHhhhhh
Confidence 4445556888899988888888888887776655444444555554441 11222211 01111111111
Q ss_pred -CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCe
Q 000700 1100 -GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSI 1178 (1344)
Q Consensus 1100 -G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~V 1178 (1344)
+-+-++|... ...+.+...+. -+...++.||-...+..+|+++.+ ..+........ |
T Consensus 123 r~gl~~~~~~~------------------~s~~~M~~~~~--~~~~~~i~Gg~Q~~li~~Dl~~~~-e~r~~~v~a~~-v 180 (1118)
T KOG1275|consen 123 RQGLPVFDFTC------------------PSMTKMASSLH--MGPSTLIMGGLQEKLIHIDLNTEK-ETRTTNVSASG-V 180 (1118)
T ss_pred ccCceeecccC------------------CCHHHHHHHhc--cCCcceeecchhhheeeeecccce-eeeeeeccCCc-e
Confidence 0111222211 00011000011 145677788877889999999988 55554443333 5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC---------CCcEE
Q 000700 1179 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---------AGDIQ 1249 (1344)
Q Consensus 1179 tsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~---------DG~I~ 1249 (1344)
+-| ..+++.+.+|...|+|.+-|.++.+ .+..+ ..|.+.|..+.++ |+.|++++. |..|+
T Consensus 181 ~im---R~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~---~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 181 TIM---RYNNRNLFCGDTRGTVFLRDPNSFE-TIHTF---DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred EEE---EecCcEEEeecccceEEeecCCcCc-eeeee---eccccceeeeecc----CCeEEEeecccccccccccchhh
Confidence 555 3468899999999999999999877 55544 4567899888775 788888875 55699
Q ss_pred EEECCCCccceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe---CCCceEEEEeccCCccccccCCCeEEEEEe
Q 000700 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS---LEGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1325 (1344)
Q Consensus 1250 IWDlr~~~~~v~tl~~h~~~Vtsla~spd-g~~LasgS~Dg~I~Iwd---~~g~~l~~l~~~h~~f~~~~~~~V~slafs 1325 (1344)
|||+|+. ..+.-+.-+.++ .-+.|+|. ...++..+..|...+-| +.......... |. ..+.+..+.++
T Consensus 250 VYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v-~p-----~~s~i~~fDiS 321 (1118)
T KOG1275|consen 250 VYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV-NP-----NGSGISAFDIS 321 (1118)
T ss_pred hhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE-cc-----CCCcceeEEec
Confidence 9999987 455555544443 55678886 34777788889999998 33333333333 33 23559999999
Q ss_pred cCCCEEEEEECCCeEEEcC
Q 000700 1326 PYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1326 pdg~~Lasgs~Dg~I~IWd 1344 (1344)
+.|..||.|..+|+|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999994
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=82.93 Aligned_cols=226 Identities=11% Similarity=0.074 Sum_probs=141.2
Q ss_pred CCEEEEEECCCcEEEEECCCCcEE-EEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeee
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLL-NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l-~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1121 (1344)
..+||.|+..|...+|...+.+.. .....+. ..|+-+.=. -....-+..++.|.++++.++.....+..+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn---n~v~~~~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~~----- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSN---NDVTLVKRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFAV----- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccc---cchhhhhhh-cccccceeeccCCcceeEEEEecCccccee-----
Confidence 348999999999999998865433 3333333 222211110 112335667788999999988652222221
Q ss_pred cccCCCCC--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC
Q 000700 1122 SIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1198 (1344)
Q Consensus 1122 ~l~~h~~~--V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~-~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG 1198 (1344)
|... +.+ +++++++..+++.|+...|..|.+..+.. .+..........--+. .++.....|++++.||
T Consensus 155 ----h~~~~~~ns----~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~-S~s~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 155 ----HNQNLTQNS----LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN-SFSENDLQFAVVFQDG 225 (344)
T ss_pred ----eccccceee----eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee-eeccCcceEEEEecCC
Confidence 2222 344 78899999999999999999998876542 2232222222112334 4567788999999999
Q ss_pred eEEEEECCCCCeeeEe-ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec-------CCC-C
Q 000700 1199 SVRLYDVRTPDMLVCS-TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA-------HRG-S 1269 (1344)
Q Consensus 1199 sVrIwDlr~~~~~v~~-~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~-------h~~-~ 1269 (1344)
++.|||+|....+... -.....|.+.+..+.|++.+--.+|...-.-+.+.+.|+|+.. ..+.+.. |.. .
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-~~q~I~i~~d~~~~~~tq~ 304 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-NHQVIVIPDDVERKHNTQH 304 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-eeeEEecCccccccccccc
Confidence 9999999976533222 2233358899999999987223455555566789999999884 3333322 222 2
Q ss_pred eEEEEEcCCCCEEEEEeC
Q 000700 1270 LSALAVHRHAPIIASGSA 1287 (1344)
Q Consensus 1270 Vtsla~spdg~~LasgS~ 1287 (1344)
|..-.|+.++.-+.+.++
T Consensus 305 ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 305 IFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccccccCCCcccccccc
Confidence 666666666554444443
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-05 Score=106.71 Aligned_cols=241 Identities=14% Similarity=0.128 Sum_probs=183.6
Q ss_pred CchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhh
Q 000700 457 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 534 (1344)
Q Consensus 457 ~~lP~vLq~LlS~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~ 534 (1344)
+-+|.+.++|.++ ..+..|+..|+..-.-..-.+...++-|.+|++++||.++..+.|.-++.++.-+....+.+|.-
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 4688889988763 45556666665554444444455567799999999999998889988999999999877677765
Q ss_pred hhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcc----------------hhHHH-------------------
Q 000700 535 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR----------------GQEAC------------------- 579 (1344)
Q Consensus 535 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~----------------gq~~~------------------- 579 (1344)
..+.|.++.++++|.+.+ ++.|..++..|+.+..+-.. -+..+
T Consensus 526 V~~aGAIppLV~LL~sgd--~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGG--PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 557799999999998764 47777777777666532211 11111
Q ss_pred --HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHh
Q 000700 580 --IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 657 (1344)
Q Consensus 580 --~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 657 (1344)
...+.+..+.++|+ .+++..+.-++-+|+.++.+..+.....+..++...++.+|..+..+||++++.||+
T Consensus 604 g~~~~ggL~~Lv~LL~-------sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~ 676 (2102)
T PLN03200 604 GSAANDALRTLIQLLS-------SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA 676 (2102)
T ss_pred hhhccccHHHHHHHHc-------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH
Confidence 12456778888888 778999999999999999988776666688888889999999999999999999999
Q ss_pred hhcccCcCCCCCCCCCCCCCChHHH-HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhhcc
Q 000700 658 TLLDIGFDSCRDGVEGDEECDDDEK-IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 720 (1344)
Q Consensus 658 ~~i~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~ 720 (1344)
.+.... .+.+. .-.+...+..|+.++.+.+..|+.+++.+|..++..-+
T Consensus 677 nL~~~~--------------~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 677 ALSRSI--------------KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHhCC--------------CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 998321 11222 22567778889999999999999999999998886543
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=95.41 Aligned_cols=239 Identities=19% Similarity=0.275 Sum_probs=191.7
Q ss_pred CCCchhhHHHHhhchhhH--HHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCch-hhhhHHHHHHHHHhccC-hh
Q 000700 455 PPEQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTP-ELRQILVFIWTKILALD-KS 530 (1344)
Q Consensus 455 ~p~~lP~vLq~LlS~~~r--lral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~-elr~~~~FIwa~il~~~-~~ 530 (1344)
.-+-.|+..++|.|+.-. -.|+--|+++.--||-.++..|+.|+++-.+.+|+.+.. -+..-++..++.+|+.- |+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 348899999999998654 478889999999999999999999999999999997754 22233677788888874 65
Q ss_pred hhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHH
Q 000700 531 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 610 (1344)
Q Consensus 531 ~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~ 610 (1344)
-..+-++ .........|...+. +-.+.+|-.|+.+-++-.+.-..-++.++...+..+|. .+.+-++.-+
T Consensus 230 P~~~~v~-~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~-------~~~~~v~~Pa 299 (514)
T KOG0166|consen 230 PPFDVVA-PILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG-------HSSPKVVTPA 299 (514)
T ss_pred CcHHHHH-HHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc-------CCCcccccHH
Confidence 5545554 345566677776664 78899999999999888887777799999999999999 6778888999
Q ss_pred HHHHHHhhccchHHHHhhhccCchhhHhhhcc-CCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHH
Q 000700 611 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 689 (1344)
Q Consensus 611 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 689 (1344)
+-++|....+.++-.+..+..++...|..++. .+..-.|+|++..++.+.. +..+.-+.-++..+
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--------------G~~~qiqaVida~l 365 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--------------GNQEQIQAVIDANL 365 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--------------CCHHHHHHHHHccc
Confidence 99999999988887778899999999999997 6666699999999999972 11122233466677
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHHh
Q 000700 690 IRSLLTVVSDGSPLVRAEVAVALARFAF 717 (1344)
Q Consensus 690 ~~~ll~~~~D~sp~VR~e~~~~ls~~~~ 717 (1344)
.-.|+.++..+.--.|+|++++++....
T Consensus 366 ~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 366 IPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 7788888877778899999999986543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.5e-05 Score=104.74 Aligned_cols=241 Identities=22% Similarity=0.195 Sum_probs=182.9
Q ss_pred CCchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccCh----
Q 000700 456 PEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDK---- 529 (1344)
Q Consensus 456 p~~lP~vLq~LlS~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~---- 529 (1344)
.|-+|.+.++|.++ ..+..|.-.|++.--..+-.+.....-|++|.++++|.+...+.|..++..+..++....
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I 566 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI 566 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH
Confidence 37899999999875 445567777776654444444444467999999999998877888777777777753211
Q ss_pred ------------hhhhh---------------------hhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000700 530 ------------SCQVD---------------------LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 576 (1344)
Q Consensus 530 ------------~~q~~---------------------l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 576 (1344)
..+.. ....++......+|+..+ ++.|..+|.+|+.++.+.+.-.
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~Aa~iLsnL~a~~~d~~ 644 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKAASVLADIFSSRQDLC 644 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCChHHH
Confidence 11110 112457777778887554 5899999999999999877765
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh-hhccCchhhHhhhccCCCHHHHHHHHHH
Q 000700 577 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFS 655 (1344)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~-~~~~~~~~~l~~ll~D~sP~VRaa~v~a 655 (1344)
..-+..+++.-++.+|. ....++|..++.+|+.+..+..+.+.. .++.++...|+.+|++.+..|+..++.+
T Consensus 645 ~avv~agaIpPLV~LLs-------s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 645 ESLATDEIINPCIKLLT-------NNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred HHHHHcCCHHHHHHHHh-------cCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 66678899999999999 778999999999999999876666544 4888898899999999999999999999
Q ss_pred HhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhhcc
Q 000700 656 LGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 720 (1344)
Q Consensus 656 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~ 720 (1344)
|+.+...+ +....+. +...+..|..++.++++.+|+.++.+|..+...+.
T Consensus 718 LanLl~~~--------------e~~~ei~-~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 718 LANLLSDP--------------EVAAEAL-AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHcCc--------------hHHHHHH-hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 99999432 1111122 33456778889999999999999999988776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=91.42 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCchhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHh-ccCCchhhhhHHHHHHHHHhccChhhh
Q 000700 456 PEQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKL-LQTTTPELRQILVFIWTKILALDKSCQ 532 (1344)
Q Consensus 456 p~~lP~vLq~LlS~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlkl-L~s~~~elr~~~~FIwa~il~~~~~~q 532 (1344)
++.++.+.+++.++ ..|.-|+..|+++=+-.. + ..-.+|.+..+ ++++..+.|..++..+..+..-...-+
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc
Confidence 44555566655554 333444444444321100 0 01234444444 445555566665555555433221111
Q ss_pred hhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000700 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 612 (1344)
Q Consensus 533 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l 612 (1344)
..+ ...+...+.+++ ++-|..++..|+.+- ...++..++..|+ |+++.||.|++.
T Consensus 127 ~~a-----~~~l~~~~~D~~--~~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~-------d~~~~VR~~A~~ 181 (280)
T PRK09687 127 PKI-----VEQSQITAFDKS--TNVRFAVAFALSVIN-----------DEAAIPLLINLLK-------DPNGDVRNWAAF 181 (280)
T ss_pred hHH-----HHHHHHHhhCCC--HHHHHHHHHHHhccC-----------CHHHHHHHHHHhc-------CCCHHHHHHHHH
Confidence 111 112223333332 355555555554331 2334555666665 556666666666
Q ss_pred HHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhh
Q 000700 613 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 659 (1344)
Q Consensus 613 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 659 (1344)
+||++-.+.++ +...|..+|.|..++||.+++.+||.+
T Consensus 182 aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 66665221222 222455666666666666666666653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=92.10 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=106.0
Q ss_pred CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCCeeeEeec
Q 000700 1142 QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPDMLVCSTR 1216 (1344)
Q Consensus 1142 ~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs-----~DGsVrIwDlr~~~~~v~~~~ 1216 (1344)
.+..+++++.||.+.+++.+...+....+...+.. --+.+.. ..++.+.++. .-+..+.|+++..+......+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-cccccee-ecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 46788899999999999987633122222221111 0111111 1233343332 123456677665443322222
Q ss_pred CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 000700 1217 PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRH-APIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1217 ~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spd-g~~LasgS~Dg~I~Iwd 1295 (1344)
.. ..|++++-+|. ....+++|+.||.+-+||.|+...+...+..|+.+|+.+-|||. +..|.++++||.+.-||
T Consensus 178 ~~----~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 AL----DAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cc----ccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 22 34999999998 67788899999999999999987888889999999999999995 45899999999999999
Q ss_pred CCCceEE
Q 000700 1296 LEGEQLG 1302 (1344)
Q Consensus 1296 ~~g~~l~ 1302 (1344)
.++..+.
T Consensus 253 as~~~l~ 259 (319)
T KOG4714|consen 253 ASTTFLS 259 (319)
T ss_pred CCCceEE
Confidence 8877666
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00078 Score=76.13 Aligned_cols=219 Identities=18% Similarity=0.195 Sum_probs=140.1
Q ss_pred EEEEEeeC-CCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEE
Q 000700 1081 KLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWD 1159 (1344)
Q Consensus 1081 sL~f~ns~-d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWD 1159 (1344)
+++| .+ ++.++++--..+.|..|+... +..... ...+ ..+ +.+...++.++++...+ +.++|
T Consensus 4 gp~~--d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~----~~~~----~~G----~~~~~~~g~l~v~~~~~-~~~~d 66 (246)
T PF08450_consen 4 GPVW--DPRDGRLYWVDIPGGRIYRVDPDT--GEVEVI----DLPG----PNG----MAFDRPDGRLYVADSGG-IAVVD 66 (246)
T ss_dssp EEEE--ETTTTEEEEEETTTTEEEEEETTT--TEEEEE----ESSS----EEE----EEEECTTSEEEEEETTC-EEEEE
T ss_pred ceEE--ECCCCEEEEEEcCCCEEEEEECCC--CeEEEE----ecCC----Cce----EEEEccCCEEEEEEcCc-eEEEe
Confidence 4567 45 666666666788899998865 333222 1111 233 56664568888887765 55559
Q ss_pred CCCCceeee--eec-CC-CCCCeeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1160 LEKEQQMVN--PIP-SS-SDCSISALTASQVHGGQLAAGFVD--------GSVRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1160 l~~~~~~v~--~i~-~~-~~~~VtsL~~~s~dg~~L~sGs~D--------GsVrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
..+++ ... ... .. .....+.+ ...++|++.++.... |.|..++.. ++ ........ ...+.
T Consensus 67 ~~~g~-~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~----~~pNG 138 (246)
T PF08450_consen 67 PDTGK-VTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGL----GFPNG 138 (246)
T ss_dssp TTTTE-EEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEE----SSEEE
T ss_pred cCCCc-EEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCc----ccccc
Confidence 88876 322 221 11 33346778 677889977776544 567777777 33 32222222 56789
Q ss_pred EEEecCCCCCEEE-EEECCCcEEEEECCCCcc------ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCce
Q 000700 1228 ISFQPGLDPAKIV-SASQAGDIQFLDIRNHKD------AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQ 1300 (1344)
Q Consensus 1228 va~sp~~~g~~La-sgs~DG~I~IWDlr~~~~------~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~ 1300 (1344)
++|+|+ ++.|+ +-+..+.|..+|+..... .+..+....+..-.+++..+|.+.++....+.|.++|.+|+.
T Consensus 139 i~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 999999 77665 666788899999974422 111222222347889999999998888888999999999999
Q ss_pred EEEEeccCCccccccCCCeEEEEEe-cCCCEEEEE
Q 000700 1301 LGTIRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAG 1334 (1344)
Q Consensus 1301 l~~l~~~h~~f~~~~~~~V~slafs-pdg~~Lasg 1334 (1344)
+..+.. .. ..+++++|. ++...|...
T Consensus 217 ~~~i~~-p~-------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIEL-PV-------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE--SS-------SSEEEEEEESTTSSEEEEE
T ss_pred EEEEcC-CC-------CCEEEEEEECCCCCEEEEE
Confidence 998886 32 579999994 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-05 Score=91.85 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=120.4
Q ss_pred cCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhh-ccCCCCchHHHHHHHHHHHHHhcCCcc
Q 000700 496 VGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRF-LDSMEAYPEQRAMAAFVLAVIVDGHRR 574 (1344)
Q Consensus 496 ~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~-L~~~~~~~~~r~~~afiLa~l~~~~~~ 574 (1344)
.-+|+.+.+++++..++.|..++.++..|=.-+ ..|.. .+...... +.+++ ++.|+.++-.|+.++.....
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~~~-----a~~~L~~l~~~D~d--~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQDN-----VFNILNNLALEDKS--ACVRASAINATGHRCKKNPL 124 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cchHH-----HHHHHHHHHhcCCC--HHHHHHHHHHHhcccccccc
Confidence 346888999999998999999999998864322 11211 12233333 34444 69999999999999754432
Q ss_pred hhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHH
Q 000700 575 GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVF 654 (1344)
Q Consensus 575 gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~ 654 (1344)
. ...+.+.+...+. |++++||..++.+||++-.. .+...|+.+|+|+++.||.++++
T Consensus 125 ~-----~~~a~~~l~~~~~-------D~~~~VR~~a~~aLg~~~~~-----------~ai~~L~~~L~d~~~~VR~~A~~ 181 (280)
T PRK09687 125 Y-----SPKIVEQSQITAF-------DKSTNVRFAVAFALSVINDE-----------AAIPLLINLLKDPNGDVRNWAAF 181 (280)
T ss_pred c-----chHHHHHHHHHhh-------CCCHHHHHHHHHHHhccCCH-----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 1 3345666777777 78999999999999976421 24457999999999999999999
Q ss_pred HHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000700 655 SLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 715 (1344)
Q Consensus 655 aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 715 (1344)
+||.+- .. ...+...|+..+.|..+.||.+++.+|+.+
T Consensus 182 aLg~~~-~~----------------------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 182 ALNSNK-YD----------------------NPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHhcCC-CC----------------------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 999982 10 012234566777999999999999999864
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8e-05 Score=90.57 Aligned_cols=242 Identities=12% Similarity=0.115 Sum_probs=169.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC----------CCCEEEEEECCCeEE
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL----------DVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~----------d~~~L~tgs~DG~Ir 1103 (1344)
-.++.|+|.| ++|.|+ ...|.|-|..+-+.+..+..|. ..|+.+.|.+.+ ..-+|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 4577888876 677777 7789999999999999999999 899999996432 123566777789999
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEe---cCC-CeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ---QQS-GYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS 1179 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws---~~~-~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt 1179 (1344)
+||... +.... .+..+..++.. ++|- .+. ..|++-....+|.+|+..+++ .+-.....+.- ..
T Consensus 93 l~d~~~--~s~~~-----~l~~~~~~~qd----l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~-k~Wk~~ys~~i-Ls 159 (1062)
T KOG1912|consen 93 LVDFVL--ASVIN-----WLSHSNDSVQD----LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE-KFWKYDYSHEI-LS 159 (1062)
T ss_pred EEEehh--hhhhh-----hhcCCCcchhh----eeeeeccCcchheeEEecCCcEEEEEEccCCc-eeeccccCCcc-ee
Confidence 999866 32222 25667777766 5663 334 345555778899999999999 66665554443 56
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCC---eeeEeecCCCCCCC----------------C---------eEEEEEe
Q 000700 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPD---MLVCSTRPHTQQVE----------------R---------VVGISFQ 1231 (1344)
Q Consensus 1180 sL~~~s~dg~~L~sGs~DGsVrIwDlr~~~---~~v~~~~~~~~h~~----------------~---------I~sva~s 1231 (1344)
|+.+.+-+.+.+..-+..|.|.+.+.-... ...+.++....|.. . ...++|+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 676666677777777777887777653211 11111111111111 0 1135678
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEeC
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1232 p~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~--~LasgS~Dg~I~Iwd~ 1296 (1344)
|. -+.++-......+.++|++-. .++.......+.+.-+.|-|+++ .|.++-.||.+.+|-.
T Consensus 240 p~--~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 240 PH--WRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hh--hhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 87 666666667788999999987 78888887778777888877655 8999999999999973
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00067 Score=75.33 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=127.5
Q ss_pred eCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCcee
Q 000700 1087 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1166 (1344)
Q Consensus 1087 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~ 1166 (1344)
+.+|++|++- .|..|.|=...++-. ..+...+..++....-+. ++|++|+..|+.+...|+|++||+....
T Consensus 6 ~~~Gk~lAi~-qd~~iEiRsa~Ddf~--si~~kcqVpkD~~PQWRk----l~WSpD~tlLa~a~S~G~i~vfdl~g~~-- 76 (282)
T PF15492_consen 6 SSDGKLLAIL-QDQCIEIRSAKDDFS--SIIGKCQVPKDPNPQWRK----LAWSPDCTLLAYAESTGTIRVFDLMGSE-- 76 (282)
T ss_pred cCCCcEEEEE-eccEEEEEeccCCch--heeEEEecCCCCCchheE----EEECCCCcEEEEEcCCCeEEEEecccce--
Confidence 4567666665 455666654433111 111111222333333333 8999999999999999999999998754
Q ss_pred eeeecCC------CCCCeeEEEEEcCC-----CCEEEEEECCCeEEEEECCCC--C--eeeEeecCCCCCCCCeEEEEEe
Q 000700 1167 VNPIPSS------SDCSISALTASQVH-----GGQLAAGFVDGSVRLYDVRTP--D--MLVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1167 v~~i~~~------~~~~VtsL~~~s~d-----g~~L~sGs~DGsVrIwDlr~~--~--~~v~~~~~~~~h~~~I~sva~s 1231 (1344)
+..++.. -...|..|.+.... ...|++-..+|.++-|-+..+ + .....+.-...+...|.++.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 3344432 22346666454433 335666777888888775321 1 1222222222346789999999
Q ss_pred cCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEE--EEEeCCCe------EEEEeCCCceEEE
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPII--ASGSAKQL------IKVFSLEGEQLGT 1303 (1344)
Q Consensus 1232 p~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~L--asgS~Dg~------I~Iwd~~g~~l~~ 1303 (1344)
|. -+.|++|+.... +++ . -++....+++-.+-.+.++. ++...|+. -.+|.+-.-.+..
T Consensus 157 p~--h~LLlVgG~~~~------~~~--~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PK--HRLLLVGGCEQN------QDG--M---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CC--CCEEEEeccCCC------CCc--c---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 98 777777764322 110 0 11223334444433333321 12222221 1233322111111
Q ss_pred EeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..+ +....|..|..||||..||+...+|.|.+|+
T Consensus 224 ~~~-------~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 224 RQG-------QEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccc-------cCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 111 2347899999999999999999999999995
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00067 Score=78.79 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=122.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC-eEEEEeccCCCCceeEEeee
Q 000700 1042 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAF 1120 (1344)
Q Consensus 1042 dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-~IrIWdl~~~~~~~~lvs~~ 1120 (1344)
+|++++..+ .|...|.+...+-.++. ++. ++|.-..+ ..+++-++.|..|| .+-|+|..+ ++.+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~---~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~--~e~kr---- 396 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKK---GGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDG--GEVKR---- 396 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCC---CceEEEEE--ccCCcceEEeccCCceEEEEecCC--ceEEE----
Confidence 577888887 77888877655544332 233 56777777 56777889999998 899999866 43332
Q ss_pred ecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC--
Q 000700 1121 SSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1198 (1344)
Q Consensus 1121 ~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG-- 1198 (1344)
+....+.|.. +..+++|..++++.+...|.+.|++++. ++.+......-|+.+ .++++++.++-+.-+|
T Consensus 397 --~e~~lg~I~a----v~vs~dGK~~vvaNdr~el~vididngn--v~~idkS~~~lItdf-~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 397 --IEKDLGNIEA----VKVSPDGKKVVVANDRFELWVIDIDNGN--VRLIDKSEYGLITDF-DWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred --eeCCccceEE----EEEcCCCcEEEEEcCceEEEEEEecCCC--eeEecccccceeEEE-EEcCCceeEEEecCccee
Confidence 2334445555 8888999999999999999999999998 555655555669999 7889999999988776
Q ss_pred --eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1199 --SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1199 --sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
.|++||+.+++ ..... +.. +.=.+-+|.|+ +++|.--+
T Consensus 468 tq~Iklydm~~~K-iy~vT-T~t---a~DfsPaFD~d--~ryLYfLs 507 (668)
T COG4946 468 TQSIKLYDMDGGK-IYDVT-TPT---AYDFSPAFDPD--GRYLYFLS 507 (668)
T ss_pred eeeEEEEecCCCe-EEEec-CCc---ccccCcccCCC--CcEEEEEe
Confidence 58999999887 33332 222 22335667777 77665443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.5e-06 Score=91.97 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=119.4
Q ss_pred EEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCC----eeeEeecCCCCC
Q 000700 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQ 1221 (1344)
Q Consensus 1146 Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~----~~v~~~~~~~~h 1221 (1344)
-++.|.+..|-+-|++++. .+.+.. .+.|.++ .+...++++..|+.+|.|..+|+|.+. .....+ -|
T Consensus 227 hfs~G~sqqv~L~nvetg~--~qsf~s--ksDVfAl-Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl----yh 297 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGH--QQSFQS--KSDVFAL-QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----YH 297 (425)
T ss_pred eecccccceeEEEEeeccc--cccccc--chhHHHH-HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE----Ec
Confidence 3666777788899999876 445553 3348887 455568899999999999999999762 122222 46
Q ss_pred CCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccc---eEEEecCCCCeEEE--EEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1222 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSAL--AVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1222 ~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~---v~tl~~h~~~Vtsl--a~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
.+.|+++..-.. .+++|++.+.+|+|++||.|.. ++ +.++.+|-..-.-+ -+++....+++++.|...+||.+
T Consensus 298 ~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 298 DSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred Ccchhhhhhhcc-ccceEeeccCcCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 688999887662 3889999999999999999976 55 88899986544443 34566678888999999999996
Q ss_pred -CCceEEEEeccCCccccccCCCeEEEEEe
Q 000700 1297 -EGEQLGTIRYHHPSFMAQKIGSVNCLTFH 1325 (1344)
Q Consensus 1297 -~g~~l~~l~~~h~~f~~~~~~~V~slafs 1325 (1344)
+|..+.++..... .....+.+++|.
T Consensus 376 ~~ghLl~tipf~~s----~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 376 DSGHLLCTIPFPYS----ASEVDIPSVAFD 401 (425)
T ss_pred ccCceeeccCCCCc----cccccccceehh
Confidence 4777777765111 112356666664
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=78.94 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred hhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Q 000700 535 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 614 (1344)
Q Consensus 535 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~L 614 (1344)
.++.++++.++.+|.+.+ +..|.-++.+|+.++.+.+.......+.+++..++.+|+ ++++.+|..++.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-------SEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-------CCCHHHHHHHHHHH
Confidence 567889999999998766 589999999999999998888888889999999999999 78999999999999
Q ss_pred HHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 615 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 615 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+.|..+.+......++.++...+..++++++..||..++.+|+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 9999998888888888889999999999999999999999999875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00067 Score=82.37 Aligned_cols=260 Identities=14% Similarity=0.118 Sum_probs=153.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeee
Q 000700 1042 FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1042 dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~ 1121 (1344)
++..+++++.+|.+..+|.++|+.+.+..... ....+... .+..++++..+|.+..+|..+ ++..-...
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v----~~~~v~v~~~~g~l~ald~~t--G~~~W~~~-- 187 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV----SDGLVLVHTSNGMLQALNESD--GAVKWTVN-- 187 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE----ECCEEEEECCCCEEEEEEccC--CCEeeeec--
Confidence 35677788889999999999999888776543 11112222 245677788889999999876 43322100
Q ss_pred cccCCCCC--ccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC---CCe---eEEEEEcC--CCCEE
Q 000700 1122 SIQGHKPG--VRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD---CSI---SALTASQV--HGGQL 1191 (1344)
Q Consensus 1122 ~l~~h~~~--V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~---~~V---tsL~~~s~--dg~~L 1191 (1344)
....... ..+.. +. .++.+++++.+|.+..+|..+++ .+-....... ..+ ..+ ...| .+..+
T Consensus 188 -~~~~~~~~~~~~sP--~v---~~~~v~~~~~~g~v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~-~~sP~v~~~~v 259 (394)
T PRK11138 188 -LDVPSLTLRGESAP--AT---AFGGAIVGGDNGRVSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDV-DTTPVVVGGVV 259 (394)
T ss_pred -CCCCcccccCCCCC--EE---ECCEEEEEcCCCEEEEEEccCCh-hhheeccccCCCccchhccccc-CCCcEEECCEE
Confidence 0000000 00100 11 24578888889999999999887 5444322110 000 000 0011 24567
Q ss_pred EEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC-CCCe
Q 000700 1192 AAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH-RGSL 1270 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h-~~~V 1270 (1344)
++++.+|.+..+|..+++...+. .. .....+.. . +..++.++.+|.+..+|..++ +.+-..... ....
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~--~~----~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~ 328 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKR--EY----GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRLL 328 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEee--cC----CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCcc
Confidence 77888999999999998743322 11 11112222 2 567888889999999999987 444332211 1112
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEeccCCccccccCCCeE-EEEEecCCCEEEEEECCCeEEEc
Q 000700 1271 SALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVN-CLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1271 tsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~-slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.+..+ .+..++.++.||.|.+.| .+|+.+...+. .. ..+. ...+ .+..|..++.||.|..+
T Consensus 329 ~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~-------~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 329 TAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-DS-------SGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred cCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-CC-------CcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 22223 245677889999999999 57887777654 22 1122 2222 24467788899998765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=73.57 Aligned_cols=236 Identities=13% Similarity=0.124 Sum_probs=127.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCce
Q 000700 1037 ALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1037 l~fspdg~~Latgs~dg~I~VWd~~tg--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1114 (1344)
++.+.+|+.||+-- |..|.|-..++. ..+.+.+....+.-.=..++| ++|+.+|+.+...|+|++||+.. ...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g--~~l 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMG--SEL 77 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEeccc--cee
Confidence 56778999888876 778888765543 333444444333345678889 89999999999999999999864 221
Q ss_pred eEEeeeeccc-CCCCCccccceEEEEecC------CCeEEEEECCCeEEEEECCCC--c--e--eeeeecCCCCCCeeEE
Q 000700 1115 KLVTAFSSIQ-GHKPGVRCSNVVVDWQQQ------SGYLYASGEVSSIMLWDLEKE--Q--Q--MVNPIPSSSDCSISAL 1181 (1344)
Q Consensus 1115 ~lvs~~~~l~-~h~~~V~s~~~~v~ws~~------~~~Llagg~Dg~I~VWDl~~~--~--~--~v~~i~~~~~~~VtsL 1181 (1344)
-.+..-.... .....|.+ +.|-.. ...|++-..+|.++-|-+..+ + + ....+..+....|+++
T Consensus 78 f~I~p~~~~~~d~~~Aiag----l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~ 153 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAG----LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA 153 (282)
T ss_pred EEcCcccccCCccccceee----eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE
Confidence 1121111111 11122222 333221 235777788888887765321 1 0 2233444545559998
Q ss_pred EEEcCCCCEEEEEEC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc------EEEEECC
Q 000700 1182 TASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD------IQFLDIR 1254 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~-DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~------I~IWDlr 1254 (1344)
.+++..++|++|+. ...-.... ....-...++...+ .|. . ..++...|+. -.+|.+-
T Consensus 154 -vy~p~h~LLlVgG~~~~~~~~s~--a~~~GLtaWRiL~~----------~Py--y-k~v~~~~~~~~~~~~~~~~~~~~ 217 (282)
T PF15492_consen 154 -VYHPKHRLLLVGGCEQNQDGMSK--ASSCGLTAWRILSD----------SPY--Y-KQVTSSEDDITASSKRRGLLRIP 217 (282)
T ss_pred -EEcCCCCEEEEeccCCCCCcccc--ccccCceEEEEcCC----------CCc--E-EEccccCccccccccccceeecc
Confidence 56666677666554 33110100 00001112221110 111 0 1111221211 1233322
Q ss_pred CCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1255 NHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
+. ............|..|..+|||..||+...+|.|.+|++..
T Consensus 218 ~~-~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 218 SF-KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ce-eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 21 11111112356899999999999999999999999999643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=89.29 Aligned_cols=159 Identities=15% Similarity=0.193 Sum_probs=110.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc----EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEE---ECCCeEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA---SCNGNIRI 1104 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~----~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tg---s~DG~IrI 1104 (1344)
..+..+..++.+.+||++..+....++++.... .+..+.... .-+++.|. .+.....++ ++...+.+
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~----~~~ai~~~--~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK----RPTAISFI--REDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc----Ccceeeee--eccceEEEEeecCCceeeee
Confidence 356667788999999999988887788776432 222222222 33445553 223333333 44555666
Q ss_pred EeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEE
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~ 1184 (1344)
|.... +..+ .+-||...+.. ++|++|+.+++++..|..|+|-...... .+..+.-++...|..++..
T Consensus 137 ~s~~~--~~~~------~~lGhvSml~d----VavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 137 LSADS--GRCE------PILGHVSMLLD----VAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLT 203 (390)
T ss_pred ecccc--cCcc------hhhhhhhhhhe----eeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeec
Confidence 66543 3333 25688888887 9999999999999999999998877666 6677765455559998444
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCee
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDML 1211 (1344)
Q Consensus 1185 s~dg~~L~sGs~DGsVrIwDlr~~~~~ 1211 (1344)
++..|++|+.|++|++||+++++.+
T Consensus 204 --~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 204 --DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred --cCceeeecCCCCcEEEEecccCCcc
Confidence 5667999999999999999998843
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.1e-05 Score=90.41 Aligned_cols=278 Identities=13% Similarity=0.179 Sum_probs=157.4
Q ss_pred eEEEEEcCCCCEEEEEE----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC
Q 000700 1034 TKTALLQPFSPIVVAAD----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs----~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~ 1109 (1344)
.+-..|||..+++++++ ..|.|.||- ++|+......-. -.+++++| +|..-.|+.|-.-|.+.+|...+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCW--Hpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCW--HPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc----eehhhhcc--ChHHHHHhhccccceeEEEecCC
Confidence 44556999999999887 578899883 445543332211 24567888 77888899999999999999755
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc-----------------eeeeeecC
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ-----------------QMVNPIPS 1172 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~-----------------~~v~~i~~ 1172 (1344)
.+...+ ...|...+.. +.|+++|+.++++..-|.|.+|...... -+...+..
T Consensus 91 --~e~htv-----~~th~a~i~~----l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~ 159 (1416)
T KOG3617|consen 91 --TETHTV-----VETHPAPIQG----LDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY 159 (1416)
T ss_pred --ceeeee-----ccCCCCCcee----EEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence 222222 4567777777 9999999999999999999999765211 00011110
Q ss_pred C--------------CCCCeeEE-------------EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC-----CC
Q 000700 1173 S--------------SDCSISAL-------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-----TQ 1220 (1344)
Q Consensus 1173 ~--------------~~~~VtsL-------------~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~-----~~ 1220 (1344)
. .++.+-.+ ..-.++|..|..++.+|+|+..|-......+...... .+
T Consensus 160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~ 239 (1416)
T KOG3617|consen 160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMG 239 (1416)
T ss_pred ChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhc
Confidence 0 00001101 1123567789999999999988865443222221100 01
Q ss_pred CCCCeEEE--------EEecCCCCCE------EE---EEECCCcEEEEECCCC--ccceEEEecCCCCeEEEEEcCCCCE
Q 000700 1221 QVERVVGI--------SFQPGLDPAK------IV---SASQAGDIQFLDIRNH--KDAYLTIDAHRGSLSALAVHRHAPI 1281 (1344)
Q Consensus 1221 h~~~I~sv--------a~sp~~~g~~------La---sgs~DG~I~IWDlr~~--~~~v~tl~~h~~~Vtsla~spdg~~ 1281 (1344)
....|..+ -+.+. .|.. =+ .|+..|.|.+=....- ..+...+ .....++|+++...+..
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~-~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY~~~~~~ 317 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLA-KGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCYGEKEIR 317 (1416)
T ss_pred ccceEEEEeeeceeeEEEecC-CCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEEeccceE
Confidence 11122211 11111 0000 00 0111111111110000 0000011 12457999999999999
Q ss_pred EEEEeCCCeEEEEeCC-----C---ceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1282 IASGSAKQLIKVFSLE-----G---EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1282 LasgS~Dg~I~Iwd~~-----g---~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
++.|...|.+.+|--. | .....+.+ .. ...+.|+.+.|.|-...++..+.
T Consensus 318 l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~-~~----e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 318 LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG-KR----ESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEecccCCcEEEeeecCccccCCCCcceEEecC-ch----hhccceEEEEeccccchhhhhhh
Confidence 9999999999999722 2 22333333 21 23478999999997666655443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00071 Score=82.68 Aligned_cols=310 Identities=11% Similarity=0.146 Sum_probs=191.7
Q ss_pred cccccCCCCCeEEEEEcCC---C-CEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC
Q 000700 1024 ACWDTRFEKGTKTALLQPF---S-PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN 1099 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fspd---g-~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D 1099 (1344)
..|-..+.+++..++|-+. . ..|++-.....+.+||..+|+......... ....|+.+.+ -|...+..-+..
T Consensus 102 ~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~---~iLs~f~~DP-fd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 102 INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH---EILSCFRVDP-FDSRHFCVLGSK 177 (1062)
T ss_pred hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC---cceeeeeeCC-CCcceEEEEccC
Confidence 3455666788889988653 3 366666668899999999999888776555 4566677732 355666666667
Q ss_pred CeEEEEeccCCCCceeEEeeeecccCCCC------------Ccc----cc-----ceEEEEecCCCeEEEEECCCeEEEE
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKP------------GVR----CS-----NVVVDWQQQSGYLYASGEVSSIMLW 1158 (1344)
Q Consensus 1100 G~IrIWdl~~~~~~~~lvs~~~~l~~h~~------------~V~----s~-----~~~v~ws~~~~~Llagg~Dg~I~VW 1158 (1344)
|.+-+-+.-...........++.-..|.. .++ +. ...++|+|.-..++-....+.+.|+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 77766665321110000000111112111 000 00 1125567776666666677789999
Q ss_pred ECCCCceeeeeecCCCCC-CeeEEEEEcCCCCEEEEEECCCeEEEEECCCC----------------Ce--eeEeecC--
Q 000700 1159 DLEKEQQMVNPIPSSSDC-SISALTASQVHGGQLAAGFVDGSVRLYDVRTP----------------DM--LVCSTRP-- 1217 (1344)
Q Consensus 1159 Dl~~~~~~v~~i~~~~~~-~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~----------------~~--~v~~~~~-- 1217 (1344)
|++-+. ++..+....+. ++..+ .-.+..+.+.++..||.+.+|-.+.. ++ .++.++.
T Consensus 258 dle~~~-~l~vvpier~~akfv~v-lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r 335 (1062)
T KOG1912|consen 258 DLEYEC-CLAVVPIERGGAKFVDV-LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR 335 (1062)
T ss_pred cchhhc-eeEEEEeccCCcceeEe-ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence 999888 87777654432 23333 23344556888888998888865531 10 1111100
Q ss_pred -------------------------------------------------------------------CCCCCCCeEEEEE
Q 000700 1218 -------------------------------------------------------------------HTQQVERVVGISF 1230 (1344)
Q Consensus 1218 -------------------------------------------------------------------~~~h~~~I~sva~ 1230 (1344)
..+|....++...
T Consensus 336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~ 415 (1062)
T KOG1912|consen 336 PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRM 415 (1062)
T ss_pred cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeec
Confidence 0123444444444
Q ss_pred ecC---------CCC-------CEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEe--------
Q 000700 1231 QPG---------LDP-------AKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS-------- 1286 (1344)
Q Consensus 1231 sp~---------~~g-------~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS-------- 1286 (1344)
+|- .++ ..++.|...|+|.++|+.++ .....+..|.+.|.++.|-....++-.+.
T Consensus 416 ~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg 494 (1062)
T KOG1912|consen 416 RPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASG 494 (1062)
T ss_pred ccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccccceeeeeeccceeEEEeeecccccccc
Confidence 332 012 35789999999999999998 78888999999999999987766554332
Q ss_pred -CCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1287 -AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1287 -~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.-+.+.|-|+....-..+++ ..+....+|..+..+..|.||+..-.|.-+.+||
T Consensus 495 ~vrN~l~vtdLrtGlsk~fR~----l~~~despI~~irvS~~~~yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 495 GVRNDLVVTDLRTGLSKRFRG----LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWD 549 (1062)
T ss_pred ceeeeEEEEEccccccccccc----CCCCCcCcceeeeecccCceEEEEecccchHHHh
Confidence 22345555644333333443 1234568999999999999999999999998886
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0042 Score=69.33 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=133.5
Q ss_pred CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCc
Q 000700 1051 ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130 (1344)
Q Consensus 1051 ~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1130 (1344)
++|.|..||..+|+.+....... .......... .+++.+++++.++.+..||..+ ++..-. + .+ ...+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~---~~~~~v~~~~~~~~l~~~d~~t--G~~~W~--~-~~---~~~~ 68 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAV---PDGGRVYVASGDGNLYALDAKT--GKVLWR--F-DL---PGPI 68 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEE---EETTEEEEEETTSEEEEEETTT--SEEEEE--E-EC---SSCG
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEE---EeCCEEEEEcCCCEEEEEECCC--CCEEEE--e-ec---cccc
Confidence 37899999999999998886522 0122222222 3577888889999999999866 443222 1 11 1222
Q ss_pred cccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCC-CCC-eeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000700 1131 RCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSS-DCS-ISALTASQVHGGQLAAGFVDGSVRLYDVRT 1207 (1344)
Q Consensus 1131 ~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i-~~~~-~~~-VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~ 1207 (1344)
... . ...++.+++++.++.|+.+|..+++ .+... .... ... .... .....++.++++..+|.|..+|.++
T Consensus 69 ~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 69 SGA---P--VVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSS-SPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp GSG---E--EEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--S-EEEEETTEEEEEETCSEEEEEETTT
T ss_pred cce---e--eecccccccccceeeeEecccCCcc-eeeeecccccccccccccc-CceEecCEEEEEeccCcEEEEecCC
Confidence 221 1 1247888888888999999999998 66663 3221 110 1111 1122378899999999999999999
Q ss_pred CCeeeEeecCCCCCC-CC------eEEEEEecCCCCCEEEEEECCCc-EEEEECCCCccceEEEecCCCCeEEEEEcCCC
Q 000700 1208 PDMLVCSTRPHTQQV-ER------VVGISFQPGLDPAKIVSASQAGD-IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1208 ~~~~v~~~~~~~~h~-~~------I~sva~sp~~~g~~Lasgs~DG~-I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
++.... ........ .. +.+-.+..+ + .++.++.+|. +.+ |+.++ +.+.... ...+..+ ...++
T Consensus 142 G~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~g~~~~~-d~~tg-~~~w~~~--~~~~~~~-~~~~~ 212 (238)
T PF13360_consen 142 GKLLWK-YPVGEPRGSSPISSFSDINGSPVISD--G-RVYVSSGDGRVVAV-DLATG-EKLWSKP--ISGIYSL-PSVDG 212 (238)
T ss_dssp TEEEEE-EESSTT-SS--EEEETTEEEEEECCT--T-EEEEECCTSSEEEE-ETTTT-EEEEEEC--SS-ECEC-EECCC
T ss_pred CcEEEE-eecCCCCCCcceeeecccccceEEEC--C-EEEEEcCCCeEEEE-ECCCC-CEEEEec--CCCccCC-ceeeC
Confidence 984333 32221110 11 122222223 4 7777777776 555 99988 4443322 2233332 34567
Q ss_pred CEEEEEeCCCeEEEEeC-CCceE
Q 000700 1280 PIIASGSAKQLIKVFSL-EGEQL 1301 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd~-~g~~l 1301 (1344)
..++.++.++.|..||. +|+.+
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 77777779999999995 55544
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0037 Score=76.29 Aligned_cols=199 Identities=10% Similarity=-0.009 Sum_probs=120.2
Q ss_pred CeEEEEEEeeCCCCE-EEEEECC---CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE---
Q 000700 1078 GISKLCLVNELDVSL-LLVASCN---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--- 1150 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~-L~tgs~D---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg--- 1150 (1344)
.+....| ++||+. ++..+.+ ..|.++|+.+ ++.+.+. ....... ...|+|++..++...
T Consensus 189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~t--g~~~~lt------~~~g~~~----~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYT--GKKEKIA------SSQGMLV----VSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCC--CcEEEEe------cCCCcEE----eeEECCCCCEEEEEEccC
Confidence 4556777 788874 5544433 4577777755 5544441 1222222 267999998887653
Q ss_pred CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1151 EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1151 ~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DG--sVrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
.+..|.++|+.++. ...+..+... .... .++|+|+.|+..+. .| .|.+.|+.+++ ..+.. ..+ .. .
T Consensus 255 g~~~Iy~~dl~~g~--~~~LT~~~~~-d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt--~~g--~~--~ 323 (419)
T PRK04043 255 GQPDIYLYDTNTKT--LTQITNYPGI-DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVV--FHG--KN--N 323 (419)
T ss_pred CCcEEEEEECCCCc--EEEcccCCCc-cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCc--cCC--Cc--C
Confidence 34578888988776 3334332221 2233 57899988777664 33 57778887766 22222 111 11 2
Q ss_pred EEEecCCCCCEEEEEECC---------CcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEe
Q 000700 1228 ISFQPGLDPAKIVSASQA---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAK---QLIKVFS 1295 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~D---------G~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~D---g~I~Iwd 1295 (1344)
..|+|+ |+.|+..+.. ..|.+.|+.++ . ...+... +......|+|||+.++..+.+ ..+.+.+
T Consensus 324 ~~~SPD--G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 324 SSVSTY--KNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred ceECCC--CCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 489999 8877766543 36888888766 2 3334332 223358899999977665432 2466777
Q ss_pred CCCceEEEEec
Q 000700 1296 LEGEQLGTIRY 1306 (1344)
Q Consensus 1296 ~~g~~l~~l~~ 1306 (1344)
++|.....+..
T Consensus 399 l~g~~~~~l~~ 409 (419)
T PRK04043 399 LNYNKSFLFPL 409 (419)
T ss_pred cCCCeeEEeec
Confidence 88876666644
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=84.02 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=105.3
Q ss_pred eCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE---ECCCeEEEEECCCC
Q 000700 1087 ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS---GEVSSIMLWDLEKE 1163 (1344)
Q Consensus 1087 s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag---g~Dg~I~VWDl~~~ 1163 (1344)
++++.+++++..+....+++........++... ..... .-+. +.+-.+.....++ |+...+.+|....+
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~---~~v~~-~~~a----i~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV---SCVPK-RPTA----ISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeE---eeccc-Ccce----eeeeeccceEEEEeecCCceeeeeeccccc
Confidence 567788888887777777777553332333311 11111 1111 3343455555555 45566777776653
Q ss_pred ceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEE
Q 000700 1164 QQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1164 ~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs 1243 (1344)
. ...+-+|-. .++.+ .+++|++.++++..|+.||+-.....- .+..+ .-||+.-|..+++.++ ..|++||
T Consensus 143 ~--~~~~lGhvS-ml~dV-avS~D~~~IitaDRDEkIRvs~ypa~f-~Iesf--clGH~eFVS~isl~~~---~~LlS~s 212 (390)
T KOG3914|consen 143 R--CEPILGHVS-MLLDV-AVSPDDQFIITADRDEKIRVSRYPATF-VIESF--CLGHKEFVSTISLTDN---YLLLSGS 212 (390)
T ss_pred C--cchhhhhhh-hhhee-eecCCCCEEEEecCCceEEEEecCccc-chhhh--ccccHhheeeeeeccC---ceeeecC
Confidence 3 445556654 49999 788999999999999999997655433 23332 2378999999999875 5699999
Q ss_pred CCCcEEEEECCCCccceEEEe
Q 000700 1244 QAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1244 ~DG~I~IWDlr~~~~~v~tl~ 1264 (1344)
.|++|++||++++ +.+.++.
T Consensus 213 GD~tlr~Wd~~sg-k~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSG-KLLDTCD 232 (390)
T ss_pred CCCcEEEEecccC-Ccccccc
Confidence 9999999999998 5555554
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.4e-05 Score=73.76 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=106.4
Q ss_pred HHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCC
Q 000700 493 ALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 572 (1344)
Q Consensus 493 al~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~ 572 (1344)
.++.|++++++++|++...++|.-++..++.++...+.+....++.++++.++.+|.+.+ +..+.-++.+|+.|+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCc
Confidence 356899999999999888899999999999999998888888999999999999998754 689999999999999999
Q ss_pred cchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000700 573 RRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 618 (1344)
Q Consensus 573 ~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~ 618 (1344)
+.......+.++...+..+|+ +.+..+|..++.+|+.|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~-------~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLD-------SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHh-------cCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999 778999999999999886
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-06 Score=99.09 Aligned_cols=214 Identities=15% Similarity=0.220 Sum_probs=146.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC--eEEEEecc
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~ 1108 (1344)
...-+|++|+-+.++|++|+..|.|++|++.+|.......+|. +.|+-+.= +.+|..+++.+.-. -..+|+..
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---cccccccc--cCCcceeeeeccccCchHHHhccc
Confidence 4678999999999999999999999999999999999999999 88988875 67888888776543 46789985
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCC--CCCeeEEEEEcC
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS--DCSISALTASQV 1186 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~--~~~VtsL~~~s~ 1186 (1344)
...+. . +.+.+ -. ++.|+.....-+.|.......+||+.+.. .+.++-... ...-..+..++|
T Consensus 1176 s~~~~---~---Hsf~e----d~----~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1176 STGGP---R---HSFDE----DK----AVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cccCc---c---ccccc----cc----eeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCC
Confidence 51111 1 11221 12 26676554555566655678999999998 665533211 111123446788
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h 1266 (1344)
+..+++ .||. +||.|..+ .+..+..+. .-..=.|||. |..++..+. |||+|+. +.+.+...-
T Consensus 1241 ~D~LIl---ndGv--LWDvR~~~-aIh~FD~ft----~~~~G~FHP~--g~eVIINSE-----IwD~RTF-~lLh~VP~L 1302 (1516)
T KOG1832|consen 1241 CDTLIL---NDGV--LWDVRIPE-AIHRFDQFT----DYGGGGFHPS--GNEVIINSE-----IWDMRTF-KLLHSVPSL 1302 (1516)
T ss_pred CcceEe---eCce--eeeeccHH-HHhhhhhhe----ecccccccCC--CceEEeech-----hhhhHHH-HHHhcCccc
Confidence 877765 4664 79999885 555554442 1123358999 888887764 8999988 555554432
Q ss_pred CCCeEEEEEcCCCCEEEE
Q 000700 1267 RGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1267 ~~~Vtsla~spdg~~Las 1284 (1344)
.-..+.|+..|.++..
T Consensus 1303 --dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 --DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred --cceEEEeccCccchhh
Confidence 2356778777776654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=80.16 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=181.2
Q ss_pred CcchHHhHhhhHHHhcCCCCCCCCC-------CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHH-----------
Q 000700 432 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLA----------- 493 (1344)
Q Consensus 432 ~~ff~~~Ltafe~~L~~g~~~~~~p-------~~lP~vLq~LlS~~~rlral~ll~~fld~~~wAv~la----------- 493 (1344)
|+=.++||.|--.|=++=+....|| |-.|-+.+.+-+-.+.+-. |= -.||.-.-
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlq------fE--AaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQ------FE--AAWALTNIASGTTQQTKVV 153 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHH------HH--HHHHHhhhccCcccceEEE
Confidence 4556788877555544444555566 4455555555333332211 21 12664332
Q ss_pred HhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCc-hHHHHHHHHHHHHHhcC-
Q 000700 494 LSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAY-PEQRAMAAFVLAVIVDG- 571 (1344)
Q Consensus 494 l~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~-~~~r~~~afiLa~l~~~- 571 (1344)
+..|-.|.|++||.++..+.|.-++.-+.-|--..+.|.--.+..|...-.+.+|.+.... ..+| -+...|+-+|++
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGk 232 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGK 232 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCC
Confidence 3568899999999999889998777766666666667776677888888888888765431 2333 345678999998
Q ss_pred CcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHH
Q 000700 572 HRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRAS 651 (1344)
Q Consensus 572 ~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa 651 (1344)
.|.--|.-+. .++.++.+++. ..+||+--=+|-+++.|-++..+.-...++.+++.+|+.+|.+++..|..-
T Consensus 233 nP~P~w~~is-qalpiL~KLiy-------s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtP 304 (526)
T COG5064 233 NPPPDWSNIS-QALPILAKLIY-------SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTP 304 (526)
T ss_pred CCCCchHHHH-HHHHHHHHHHh-------hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCH
Confidence 5555565444 45778888888 778999999999999999998888888899999999999999999999999
Q ss_pred HHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 652 AVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 652 ~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
++-++|.+|... +.+.++-+.-.....+..+++.+...+|||+-+-+|-+-..
T Consensus 305 alR~vGNIVTG~--------------D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 305 ALRSVGNIVTGS--------------DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHhhcCeeecC--------------ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccC
Confidence 999999998321 11112334455556667777888889999999888765433
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=89.57 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeee
Q 000700 1089 DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVN 1168 (1344)
Q Consensus 1089 d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~ 1168 (1344)
++..++.|+-...+..+|+.+ .+.... ..-..+.+. .+. .++..+++|...|+|.+-|.++.+ .++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~--~~e~r~-----~~v~a~~v~----imR--~Nnr~lf~G~t~G~V~LrD~~s~~-~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT--EKETRT-----TNVSASGVT----IMR--YNNRNLFCGDTRGTVFLRDPNSFE-TIH 211 (1118)
T ss_pred CCcceeecchhhheeeeeccc--ceeeee-----eeccCCceE----EEE--ecCcEEEeecccceEEeecCCcCc-eee
Confidence 556677777777777888765 211111 111111121 233 357888999999999999999999 999
Q ss_pred eecCCCCCCeeEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000700 1169 PIPSSSDCSISALTASQVHGGQLAAGFV---------DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1239 (1344)
Q Consensus 1169 ~i~~~~~~~VtsL~~~s~dg~~L~sGs~---------DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~L 1239 (1344)
++..|++. |..+ +..|++|++++. |.-|+|||+|..+.+. .+... ..-.-+.|+|. -...+
T Consensus 212 t~~aHs~s-iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~----~~P~flrf~Ps-l~t~~ 281 (1118)
T KOG1275|consen 212 TFDAHSGS-ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFP----YGPQFLRFHPS-LTTRL 281 (1118)
T ss_pred eeeccccc-eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccC-Ccccc----cCchhhhhccc-ccceE
Confidence 99999887 7766 456889988875 4568999999776322 22111 22245778887 56778
Q ss_pred EEEECCCcEEEEECCCCccc---eEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1240 VSASQAGDIQFLDIRNHKDA---YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1240 asgs~DG~I~IWDlr~~~~~---v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
++++..|...+-|..+...+ +..+......+.++++++++..+|.|..+|.|.+|.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 89999999999994433222 333444455699999999999999999999999997
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.018 Score=65.09 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=133.5
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCce
Q 000700 1036 TALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1036 ~l~fsp-dg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1114 (1344)
+..|.+ ++.++++--..+.|..|+..+++... +... ....+++ ...+..|+.+...+ +.++|..+ ++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-----~~~G~~~--~~~~g~l~v~~~~~-~~~~d~~~--g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-----GPNGMAF--DRPDGRLYVADSGG-IAVVDPDT--GKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-----SEEEEEE--ECTTSEEEEEETTC-EEEEETTT--TEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-----CCceEEE--EccCCEEEEEEcCc-eEEEecCC--CcE
Confidence 567888 55555665578999999998765433 3222 2567777 42335566665554 45557755 443
Q ss_pred eEEeeeecccC-CCCCccccceEEEEecCCCeEEEEECC--------CeEEEEECCCCceeeeeecCCCCCCeeEEEEEc
Q 000700 1115 KLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEV--------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1115 ~lvs~~~~l~~-h~~~V~s~~~~v~ws~~~~~Llagg~D--------g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s 1185 (1344)
+....... .. .....+. +++.++|...++.... |.|..++.. ++ ....... -. ....| .++
T Consensus 73 ~~~~~~~~-~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~-~~-~pNGi-~~s 142 (246)
T PF08450_consen 73 TVLADLPD-GGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG-LG-FPNGI-AFS 142 (246)
T ss_dssp EEEEEEET-TCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE-ES-SEEEE-EEE
T ss_pred EEEeeccC-CCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC-cc-cccce-EEC
Confidence 33311100 11 2233344 7788877744444332 567777877 44 2222222 22 25778 677
Q ss_pred CCCCEEE-EEECCCeEEEEECCCCCe-e--eEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1186 VHGGQLA-AGFVDGSVRLYDVRTPDM-L--VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1186 ~dg~~L~-sGs~DGsVrIwDlr~~~~-~--v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
++++.|+ +-+..+.|..||+..... . ...+.......+..-.+++..+ |++.++....+.|.++|.+ + +.+.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G-~~~~ 218 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-G-KLLR 218 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-S-CEEE
T ss_pred CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-c-cEEE
Confidence 8888665 667788999999874432 1 1222122222234788999998 9988888889999999998 4 6788
Q ss_pred EEecCCCCeEEEEEc-CCCCEEE
Q 000700 1262 TIDAHRGSLSALAVH-RHAPIIA 1283 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~s-pdg~~La 1283 (1344)
.+......+++++|. ++...|.
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEE
Confidence 787665689999994 5545443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0016 Score=80.96 Aligned_cols=218 Identities=11% Similarity=0.128 Sum_probs=133.5
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCC-eEEEEEEeeCCCCEEEEEECCC-----eEEEEeccCCC
Q 000700 1038 LLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKG-ISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQK 1111 (1344)
Q Consensus 1038 ~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~-ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~~ 1111 (1344)
+|++.+..+|.|+.+|.|.+.+-. -+.+..|+.+. .. |..+... ....+|++.+.|+ .++||++...+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccC
Confidence 467888999999999998888743 34557788877 45 4444432 2336777776654 48999997642
Q ss_pred C-c-eeEEeeeecccCCCCC-ccccceEEEEecCCCeEEEEECCCeEEEEE--CCCCceeeeeecCCCCCCeeEEEEEcC
Q 000700 1112 D-K-QKLVTAFSSIQGHKPG-VRCSNVVVDWQQQSGYLYASGEVSSIMLWD--LEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1112 ~-~-~~lvs~~~~l~~h~~~-V~s~~~~v~ws~~~~~Llagg~Dg~I~VWD--l~~~~~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
+ . +.++...+. ..+..+ -.....+++.+.+-..+++|-.+|.|..+. +.++......+......+||++ .+..
T Consensus 104 ~n~sP~c~~~~ri-~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL-~~~~ 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRI-FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL-ALRS 181 (933)
T ss_pred CCCCcceeeeeee-eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee-EEec
Confidence 2 2 333311121 222222 122233478888888888998999998883 3333212233333445579999 4555
Q ss_pred CCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEe-c
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-A 1265 (1344)
Q Consensus 1187 dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~-~ 1265 (1344)
++..++-...-..|.+|.+.......+ .+..|+..+.|..+++. ...+++++. ..+.+||.... .+-.++. +
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~---~ld~~G~~lnCss~~~~--t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g 254 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK---VLDNNGISLNCSSFSDG--TYQFICAGS-EFLYFYDSDGR-GPCFAFEVG 254 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee---eeccCCccceeeecCCC--CccEEEecC-ceEEEEcCCCc-ceeeeecCC
Confidence 666523333345799999885442232 34456788999999887 444555543 46999999866 4555555 5
Q ss_pred CCCCe
Q 000700 1266 HRGSL 1270 (1344)
Q Consensus 1266 h~~~V 1270 (1344)
|+..+
T Consensus 255 ~kk~~ 259 (933)
T KOG2114|consen 255 EKKEM 259 (933)
T ss_pred CeEEE
Confidence 55433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00091 Score=83.08 Aligned_cols=194 Identities=10% Similarity=0.088 Sum_probs=126.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC-----eEEEEECCCC---
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-----SVRLYDVRTP--- 1208 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG-----sVrIwDlr~~--- 1208 (1344)
-+|++.++.++.|+.+|.|.+.+-.- + .+..+..+..+-|+.+ +...+.++|++-+.|+ .|++||+...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~-~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-Q-LIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-e-eeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 56888999999999999988877432 2 3467777665545666 4433446777766665 4899998743
Q ss_pred --Ceee---Eeec-CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECC---CCccceEEEecCCCCeEEEEEcCCC
Q 000700 1209 --DMLV---CSTR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR---NHKDAYLTIDAHRGSLSALAVHRHA 1279 (1344)
Q Consensus 1209 --~~~v---~~~~-~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr---~~~~~v~tl~~h~~~Vtsla~spdg 1279 (1344)
..+. +.+. .......++.+++++.+ -..+|+|-.||.|..+.-. ..+....-....+.+||++++..++
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1122 2221 11123567889999998 8999999999999998532 2212222222346799999999888
Q ss_pred CEEEEEeCCCeEEEEeCCCce--EEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1280 PIIASGSAKQLIKVFSLEGEQ--LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd~~g~~--l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..++-......|.+|.++|+. +..+.. | ...++|.+|++....+++++ +..|.+|+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~-~-------G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDN-N-------GISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeecc-C-------CccceeeecCCCCccEEEec-CceEEEEc
Confidence 862222223679999988776 233333 3 37889999987766455554 34566664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0053 Score=74.99 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=108.6
Q ss_pred EEEEecCCCe-EEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEE-ECC--CeEEEEECCCC
Q 000700 1136 VVDWQQQSGY-LYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG-FVD--GSVRLYDVRTP 1208 (1344)
Q Consensus 1136 ~v~ws~~~~~-Llagg~---Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sG-s~D--GsVrIwDlr~~ 1208 (1344)
...|+|+++. ++..+. +..|.++|+.+++ .. .+....+. .... .++|+|+.++.. +.+ ..|.++|+.++
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~-~lt~~~g~-~~~~-~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KE-KIASSQGM-LVVS-DVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EE-EEecCCCc-EEee-EECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3899999985 554432 4579999998887 33 33222222 3444 578999876644 333 56888898776
Q ss_pred CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC-CC--cEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEE
Q 000700 1209 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AG--DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1285 (1344)
Q Consensus 1209 ~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~-DG--~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Lasg 1285 (1344)
+ ..+.. .. ........|+|+ |+.|+-.+. .| .|.++|+.++ +..+ +..... ....|+|+|+.|+..
T Consensus 268 ~-~~~LT-~~---~~~d~~p~~SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g-~~~r-lt~~g~--~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 T-LTQIT-NY---PGIDVNGNFVED--DKRIVFVSDRLGYPNIFMKKLNSG-SVEQ-VVFHGK--NNSSVSTYKNYIVYS 336 (419)
T ss_pred c-EEEcc-cC---CCccCccEECCC--CCEEEEEECCCCCceEEEEECCCC-CeEe-CccCCC--cCceECCCCCEEEEE
Confidence 5 33222 22 122345679999 877666553 33 5778888766 3322 221111 124899999988766
Q ss_pred eCC---------CeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1286 SAK---------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1286 S~D---------g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
+.. ..|.+.|+.+.....+.. . +......|+|||++++..+.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~--------~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTA-N--------GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCC-C--------CCcCCeEECCCCCEEEEEEc
Confidence 543 367888877666666654 2 12235889999987776654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=85.21 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=104.6
Q ss_pred EEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc----eeeee
Q 000700 1094 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ----QMVNP 1169 (1344)
Q Consensus 1094 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~----~~v~~ 1169 (1344)
++.|.+-.|-+-++.+ +..+. +. ..+.|.+ +.|...++.++.|+.+|.|.++|++... .+.+.
T Consensus 228 fs~G~sqqv~L~nvet--g~~qs------f~-sksDVfA----lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVET--GHQQS------FQ-SKSDVFA----LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred ecccccceeEEEEeec--ccccc------cc-cchhHHH----HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3444555677777765 22211 11 3334444 6777788999999999999999998652 13333
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeE--EEEEecCCCCCEEEEEECCCc
Q 000700 1170 IPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVV--GISFQPGLDPAKIVSASQAGD 1247 (1344)
Q Consensus 1170 i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~--sva~sp~~~g~~Lasgs~DG~ 1247 (1344)
+. +++.|+++...+-++..|++.+.+|+|++||+|.-+..+ .....+||...-. -+.+++. ...++++++|..
T Consensus 295 ly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~e--eg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEE--EGSIFSVGDDCY 369 (425)
T ss_pred EE--cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccc--cceEEEccCeeE
Confidence 33 344599997776688999999999999999999766322 1224445544333 2445565 778888999999
Q ss_pred EEEEECCCCccceEEEec
Q 000700 1248 IQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1248 I~IWDlr~~~~~v~tl~~ 1265 (1344)
.+||.++.+ ..+.++..
T Consensus 370 tRiWsl~~g-hLl~tipf 386 (425)
T KOG2695|consen 370 TRIWSLDSG-HLLCTIPF 386 (425)
T ss_pred EEEEecccC-ceeeccCC
Confidence 999999988 77777663
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00029 Score=94.09 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCCchhhHHHHhhchh--hHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000700 455 PPEQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532 (1344)
Q Consensus 455 ~p~~lP~vLq~LlS~~--~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q 532 (1344)
+++.+|.+.++|..+. -|..|+..|.++.+.-+ --+.++++|+++.++.|..++-.+..+=.
T Consensus 650 ~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------ 713 (897)
T PRK13800 650 PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRA------ 713 (897)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 5677888888886654 55666666666642111 12456677777777788776666544321
Q ss_pred hhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000700 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 612 (1344)
Q Consensus 533 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l 612 (1344)
+....++..|.+++ ++.|..++..|+.+ .. ...++..|. |++|+||..++-
T Consensus 714 ------~~~~~l~~~L~D~d--~~VR~~Av~aL~~~-~~-------------~~~l~~~l~-------D~~~~VR~~aa~ 764 (897)
T PRK13800 714 ------GDAALFAAALGDPD--HRVRIEAVRALVSV-DD-------------VESVAGAAT-------DENREVRIAVAK 764 (897)
T ss_pred ------CCHHHHHHHhcCCC--HHHHHHHHHHHhcc-cC-------------cHHHHHHhc-------CCCHHHHHHHHH
Confidence 11124556666655 47777777777764 11 122445566 777788887777
Q ss_pred HHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 613 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 613 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+|+.+......+ ...|..+++|+.|+||++++-+|+.+-
T Consensus 765 aL~~~~~~~~~~---------~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 765 GLATLGAGGAPA---------GDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred HHHHhccccchh---------HHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 777776542211 235667777777777777777777664
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=81.62 Aligned_cols=252 Identities=13% Similarity=0.174 Sum_probs=166.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCC--C-cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEEC-CCeEEEEec
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEE--D-TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1107 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~t--g-~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~-DG~IrIWdl 1107 (1344)
.-|+.+.-+ -.+++.+++-||.++.|.-.. | +.+..+..|. ..|.+++. +.++.++.+.+. |..++++|+
T Consensus 10 d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL---~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 10 DVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL---GVILSLAV--SYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHH---HHHHhhhc--cccceeEeeccCcccceeEEEe
Confidence 334444332 346899999999999997543 2 5566677888 78888888 679999999887 999999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCC----eEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG----YLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~----~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~ 1182 (1344)
..-+-. ..+ ...-+++. ++|....+ .++++. ++|.|.|+|-.........+..-+.++|..+
T Consensus 84 En~Dmi-nmi-KL~~lPg~----------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i- 150 (558)
T KOG0882|consen 84 ENFDMI-NMI-KLVDLPGF----------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI- 150 (558)
T ss_pred eccchh-hhc-ccccCCCc----------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE-
Confidence 652110 000 00011111 34433333 455553 7899999998765513344555556679999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC----CCe-eeEeec------CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRT----PDM-LVCSTR------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~DGsVrIwDlr~----~~~-~v~~~~------~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IW 1251 (1344)
...+.++.+++....|.|..|.... .+. ....++ .....++..+++.|+|+ +..+.+-+.|..|+++
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--GAQISTLNPDRKVRGF 228 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc--cCcccccCcccEEEEE
Confidence 6778899999999999999998763 110 111110 11123467889999999 9999999999999999
Q ss_pred ECCCCccceEEEec--------------------------------CC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 000700 1252 DIRNHKDAYLTIDA--------------------------------HR-GSLSALAVHRHAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1252 Dlr~~~~~v~tl~~--------------------------------h~-~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g 1298 (1344)
+.+++ +.++.+.. |. ..-+.+.|...+++|.-|+-=| |+|.++..
T Consensus 229 ~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 229 VFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred Eeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 99987 44433321 11 1235677888899998887654 78888655
Q ss_pred ceEEEEec
Q 000700 1299 EQLGTIRY 1306 (1344)
Q Consensus 1299 ~~l~~l~~ 1306 (1344)
..+..+-+
T Consensus 307 n~v~ri~g 314 (558)
T KOG0882|consen 307 NTVVRILG 314 (558)
T ss_pred CeEEEEec
Confidence 44444433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=58.57 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=36.4
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1258 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1258 ~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=93.15 Aligned_cols=147 Identities=18% Similarity=0.109 Sum_probs=108.4
Q ss_pred chhhHHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000700 458 QLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 535 (1344)
Q Consensus 458 ~lP~vLq~LlS~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l 535 (1344)
.++.+++.|..+ .-|..|+..|+++-+ -+.+|-+.++|.++..+.|..++--+.+|....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 566778888775 466778888888742 345688889999998899988888887774332221
Q ss_pred hhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH
Q 000700 536 VKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLG 615 (1344)
Q Consensus 536 ~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg 615 (1344)
...+..|++++ ++.|..++-.|+.+-.. -...++..|. |++|.||..++.+|+
T Consensus 687 ------~~L~~~L~~~d--~~VR~~A~~aL~~~~~~------------~~~~l~~~L~-------D~d~~VR~~Av~aL~ 739 (897)
T PRK13800 687 ------PALRDHLGSPD--PVVRAAALDVLRALRAG------------DAALFAAALG-------DPDHRVRIEAVRALV 739 (897)
T ss_pred ------HHHHHHhcCCC--HHHHHHHHHHHHhhccC------------CHHHHHHHhc-------CCCHHHHHHHHHHHh
Confidence 23445566543 68999998888876311 1235667888 899999999999999
Q ss_pred HhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 616 KLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 616 ~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
.+ +. .+.|+.+++|++|+||.+++-+|+.+-
T Consensus 740 ~~-~~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 740 SV-DD-------------VESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred cc-cC-------------cHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 85 11 124778999999999999999999885
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0094 Score=66.51 Aligned_cols=207 Identities=17% Similarity=0.200 Sum_probs=124.9
Q ss_pred ccccccCCCCCeEEEE--EcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC
Q 000700 1023 IACWDTRFEKGTKTAL--LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100 (1344)
Q Consensus 1023 i~~Wd~~~~~~I~~l~--fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG 1100 (1344)
...|....+..+.... ..+++..+++++.++.+..||..+|+.+.++.... .+..... .+++.+++++.++
T Consensus 14 ~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~----~~~~~~~---~~~~~v~v~~~~~ 86 (238)
T PF13360_consen 14 KELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG----PISGAPV---VDGGRVYVGTSDG 86 (238)
T ss_dssp EEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS----CGGSGEE---EETTEEEEEETTS
T ss_pred CEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc----cccceee---eccccccccccee
Confidence 3456665432222222 34467788888899999999999999998887643 1111111 2466777777888
Q ss_pred eEEEEeccCCCCceeEEeeeecccC-CCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCC--
Q 000700 1101 NIRIWKDYDQKDKQKLVTAFSSIQG-HKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCS-- 1177 (1344)
Q Consensus 1101 ~IrIWdl~~~~~~~~lvs~~~~l~~-h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~-- 1177 (1344)
.+..+|..+ ++..-.. .... ....... .....+ .++.++++..++.|..+|.++++ .+..........
T Consensus 87 ~l~~~d~~t--G~~~W~~---~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 87 SLYALDAKT--GKVLWSI---YLTSSPPAGVRS-SSSPAV--DGDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTT--SCEEEEE---EE-SSCTCSTB---SEEEE--ETTEEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS-
T ss_pred eeEecccCC--cceeeee---cccccccccccc-ccCceE--ecCEEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCc
Confidence 999999766 4432210 0111 1111111 111222 37889999989999999999999 776665533211
Q ss_pred -e------eEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1178 -I------SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1178 -V------tsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
+ .+- ..-.++ .+..+..+|.+..+|..+++... .. .. ..+..+ .... +..+++++.++.|..
T Consensus 158 ~~~~~~~~~~~-~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~-~~----~~~~~~-~~~~--~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 158 PISSFSDINGS-PVISDG-RVYVSSGDGRVVAVDLATGEKLW-SK-PI----SGIYSL-PSVD--GGTLYVTSSDGRLYA 226 (238)
T ss_dssp -EEEETTEEEE-EECCTT-EEEEECCTSSEEEEETTTTEEEE-EE-CS----S-ECEC-EECC--CTEEEEEETTTEEEE
T ss_pred ceeeecccccc-eEEECC-EEEEEcCCCeEEEEECCCCCEEE-Ee-cC----CCccCC-ceee--CCEEEEEeCCCEEEE
Confidence 1 111 122234 77777778864444999998443 22 12 222221 2344 778888889999999
Q ss_pred EECCCC
Q 000700 1251 LDIRNH 1256 (1344)
Q Consensus 1251 WDlr~~ 1256 (1344)
||++++
T Consensus 227 ~d~~tG 232 (238)
T PF13360_consen 227 LDLKTG 232 (238)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 999998
|
... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=76.38 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=150.2
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhc
Q 000700 469 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 548 (1344)
Q Consensus 469 ~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 548 (1344)
+..+..||..|--|+.-=--| +.-++.|+..-++..|+++..++|..++++++.+....|.+|+.++..++....+.+|
T Consensus 97 le~ke~ald~Le~lve~iDnA-ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNA-NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhH-HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 567778888777776221122 2235889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhh
Q 000700 549 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIG 628 (1344)
Q Consensus 549 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~ 628 (1344)
...+. -.-|.=+-|-++.++++++.||..-++.+.+..+...|+.- +.+..++.=++++++.|......-+...
T Consensus 176 s~~~~-~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-----~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 176 SSDDP-NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-----NTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred ccCCC-chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-----CcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 84433 34557788888999999999999999999999999999831 2678888999999999998766666665
Q ss_pred hccCchhhHhhhccCCCHHHHHHHHHHHhhhcc
Q 000700 629 RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 629 ~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
-...+...+..+..-..-+++.+++-++-+++.
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 556666666677777777899998888888873
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.012 Score=71.43 Aligned_cols=225 Identities=13% Similarity=0.089 Sum_probs=132.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC--CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeee
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD--KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAF 1120 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~--~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~ 1120 (1344)
+..+++++.+|.+..+|.++|+.+..+....+.. ....+-.. .++.++.++.+|.+..+|..+ ++..-....
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v----~~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~ 233 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT----AFGGAIVGGDNGRVSAVLMEQ--GQLIWQQRI 233 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE----ECCEEEEEcCCCEEEEEEccC--Chhhheecc
Confidence 4567777789999999999999988776532100 00011111 234577778888888888765 322111000
Q ss_pred ecccC-C----CCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE
Q 000700 1121 SSIQG-H----KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1195 (1344)
Q Consensus 1121 ~~l~~-h----~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs 1195 (1344)
....+ + ...+... ... .++.+++++.+|.+..+|..+++ .+-..... . ...+ . ..++.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~s---P~v--~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~--~-~~~~-~--~~~~~vy~~~ 301 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTT---PVV--VGGVVYALAYNGNLVALDLRSGQ-IVWKREYG--S-VNDF-A--VDGGRIYLVD 301 (394)
T ss_pred ccCCCccchhcccccCCC---cEE--ECCEEEEEEcCCeEEEEECCCCC-EEEeecCC--C-ccCc-E--EECCEEEEEc
Confidence 00000 0 0001110 011 36788888889999999999988 55443321 1 1122 1 1466788888
Q ss_pred CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEE-EE
Q 000700 1196 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA-LA 1274 (1344)
Q Consensus 1196 ~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vts-la 1274 (1344)
.+|.+..+|..+++...+.- ... + ....+..+. +..++.++.||.|...|..++ +.+...+.....+.+ ..
T Consensus 302 ~~g~l~ald~~tG~~~W~~~-~~~-~-~~~~sp~v~----~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQS-DLL-H-RLLTAPVLY----NGYLVVGDSEGYLHWINREDG-RFVAQQKVDSSGFLSEPV 373 (394)
T ss_pred CCCeEEEEECCCCcEEEccc-ccC-C-CcccCCEEE----CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCCCcceeCCE
Confidence 99999999999887433221 111 0 112222222 567888999999999999988 677666543333322 22
Q ss_pred EcCCCCEEEEEeCCCeEEEEe
Q 000700 1275 VHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1275 ~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
+ .+..|..++.||.|..++
T Consensus 374 ~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 374 V--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred E--ECCEEEEEeCCceEEEEe
Confidence 2 234677778899888765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0075 Score=77.87 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=132.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec----
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD---- 1107 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl---- 1107 (1344)
..|.++.|..+...++.+..+|.|.+-|.++.... ....-. .+|.+++| ++|+..++..+..+++.+-.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd---~GI~aasw--S~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVD---NGISAASW--SPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeecc---CceEEEee--cCCCcEEEEEeCCcEEEEEeccccc
Confidence 47999999999999999999999999988765332 122222 68999999 899999999988887766432
Q ss_pred cCC-------CCceeEE--------eeeecccC---------CCC--C---ccccceEEEEecCCCeEEEEE----CC-C
Q 000700 1108 YDQ-------KDKQKLV--------TAFSSIQG---------HKP--G---VRCSNVVVDWQQQSGYLYASG----EV-S 1153 (1344)
Q Consensus 1108 ~~~-------~~~~~lv--------s~~~~l~~---------h~~--~---V~s~~~~v~ws~~~~~Llagg----~D-g 1153 (1344)
-.. .+..+.+ +.++.-.+ +.. + +.+-...+.|.-+|.++++.+ .+ +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 000 0000000 11111000 000 0 111223489998888888852 33 7
Q ss_pred eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000700 1154 SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1154 ~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs---~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~ 1230 (1344)
.|+|||.+ +. +..........-.++ .|.|.|..+++-. .|+.|.+|....-..-.... ........|..++|
T Consensus 223 kirV~drE-g~--Lns~se~~~~l~~~L-sWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GA--LNSTSEPVEGLQHSL-SWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-PFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-ch--hhcccCcccccccce-eecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-CCcccccchheeee
Confidence 89999988 43 333333333323566 6677888888743 35679999865433111111 11112234899999
Q ss_pred ecCCCCCEEEE---EECCCcEEEEECCCC
Q 000700 1231 QPGLDPAKIVS---ASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1231 sp~~~g~~Las---gs~DG~I~IWDlr~~ 1256 (1344)
+.+ +..|++ ......|++|-+.+.
T Consensus 298 ns~--sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 298 NSN--SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCC--CCceeeeecccccceEEEEEecCe
Confidence 998 888887 445555999998865
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=78.86 Aligned_cols=234 Identities=15% Similarity=0.238 Sum_probs=178.1
Q ss_pred CchhhHHHHhhchhh--HHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhH--HHHHHHHHhccC---h
Q 000700 457 EQLPIVLQVLLSQCH--RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQI--LVFIWTKILALD---K 529 (1344)
Q Consensus 457 ~~lP~vLq~LlS~~~--rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~--~~FIwa~il~~~---~ 529 (1344)
+-.|.+.|+|.|... |-.|+-.|++.-.-++-.+...|..|.+--+|-||++.+..++-+ +...++-.|+.- |
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 678999999998654 556777788888888888899999999999999999988765543 566677777763 2
Q ss_pred hhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHH
Q 000700 530 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 609 (1344)
Q Consensus 530 ~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w 609 (1344)
+-|. + ........+.+-..+ +|.-.=+|..++.|.++-.+.-.+-+..+....++++|. .++..+..=
T Consensus 237 ~w~~--i-sqalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs-------~~sa~iqtP 304 (526)
T COG5064 237 DWSN--I-SQALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS-------HESAKIQTP 304 (526)
T ss_pred chHH--H-HHHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc-------CccccccCH
Confidence 2221 1 112345555555555 477777888888998887777777789999999999998 566666666
Q ss_pred HHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHH
Q 000700 610 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 689 (1344)
Q Consensus 610 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 689 (1344)
++=.+|.+..+.+.-..+-|++++...+..+|+.+---+|+|++.-++.+-. +..+.-++-+|..+
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--------------Gnteqiqavid~nl 370 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--------------GNTEQIQAVIDANL 370 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--------------CCHHHHHHHHhccc
Confidence 6667899998888777777999999999999999999999999999998761 11122234577777
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHHH
Q 000700 690 IRSLLTVVSDGSPLVRAEVAVALARFA 716 (1344)
Q Consensus 690 ~~~ll~~~~D~sp~VR~e~~~~ls~~~ 716 (1344)
+-.|+.++.-+.-..|||+-++++-..
T Consensus 371 iPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 371 IPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888777777889999999988654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0001 Score=57.75 Aligned_cols=39 Identities=31% Similarity=0.553 Sum_probs=34.6
Q ss_pred CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1298 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1298 g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+.+.++.+ |. +.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~-h~-------~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HS-------SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SS-------SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CC-------CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356677777 65 8999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=81.45 Aligned_cols=206 Identities=13% Similarity=0.161 Sum_probs=138.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC-CCeE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-VSSI 1155 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~-Dg~I 1155 (1344)
..|+.+.- ...+++.+++-||.++.|.-... ...+.+ ..+..|...+.+ ++-+.++-.+.+.++ |..+
T Consensus 10 d~i~hv~~---tka~fiiqASlDGh~KFWkKs~i-sGvEfV---KhFraHL~~I~s----l~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 10 DVITHVFP---TKAKFIIQASLDGHKKFWKKSRI-SGVEFV---KHFRAHLGVILS----LAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ceeeeEee---ehhheEEeeecchhhhhcCCCCc-cceeeh---hhhHHHHHHHHh----hhccccceeEeeccCcccce
Confidence 45665544 46789999999999999986431 122333 344556666665 555556666666576 9999
Q ss_pred EEEECCCCceeeeeecCCC-CCCeeEEEEEcCCC----CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEE
Q 000700 1156 MLWDLEKEQQMVNPIPSSS-DCSISALTASQVHG----GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISF 1230 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~~i~~~~-~~~VtsL~~~s~dg----~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~ 1230 (1344)
+++|++.-. .+.-++... ...+..+ ...| .+-++...+|.+.++|-+...+....++ .-|.++|..+.+
T Consensus 79 KvfDvEn~D-minmiKL~~lPg~a~wv---~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFD-MINMIKLVDLPGFAEWV---TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRY 152 (558)
T ss_pred eEEEeeccc-hhhhcccccCCCceEEe---cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEe
Confidence 999998776 443333211 1112222 2233 3344556789999999987653333332 247799999999
Q ss_pred ecCCCCCEEEEEECCCcEEEEECCC-Cc----cc---------eEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1231 QPGLDPAKIVSASQAGDIQFLDIRN-HK----DA---------YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1231 sp~~~g~~Lasgs~DG~I~IWDlr~-~~----~~---------v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
.+. +..+++....|.|.-|.... .. .. +..+....+..+++.|+|++..+++-+.|..|++++.
T Consensus 153 ~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecc--ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 999 99999999999999998873 10 01 1111223457789999999999999999999999995
Q ss_pred C-CceE
Q 000700 1297 E-GEQL 1301 (1344)
Q Consensus 1297 ~-g~~l 1301 (1344)
. |+.+
T Consensus 231 KtGklv 236 (558)
T KOG0882|consen 231 KTGKLV 236 (558)
T ss_pred ccchhh
Confidence 4 4433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.034 Score=60.91 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=143.7
Q ss_pred ccccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeE
Q 000700 1023 IACWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1023 i~~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~I 1102 (1344)
.-.|....+.+|.+-+.- -|++++.|...|.+++.+.++|+....|..-. .|.+-+-. ..++.++..|+.|++.
T Consensus 44 ~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~~-d~~~glIycgshd~~~ 117 (354)
T KOG4649|consen 44 NLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVKVRAQC-DFDGGLIYCGSHDGNF 117 (354)
T ss_pred cEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh----hhccceEE-cCCCceEEEecCCCcE
Confidence 345777777777665554 57789999999999999999998888877654 23322222 4689999999999999
Q ss_pred EEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCC-CCCCeeEE
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISAL 1181 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~-~~~~VtsL 1181 (1344)
...|.++. ..+ |+ .+ -.+.+.. .-+..+..+.|+++...|.+.--...... ..++-.+ ...+|-+-
T Consensus 118 yalD~~~~----~cV--yk-sk-cgG~~f~---sP~i~~g~~sly~a~t~G~vlavt~~~~~--~~~~w~~~~~~PiF~s 184 (354)
T KOG4649|consen 118 YALDPKTY----GCV--YK-SK-CGGGTFV---SPVIAPGDGSLYAAITAGAVLAVTKNPYS--STEFWAATRFGPIFAS 184 (354)
T ss_pred EEeccccc----ceE--Ee-cc-cCCceec---cceecCCCceEEEEeccceEEEEccCCCC--cceehhhhcCCccccC
Confidence 99998661 111 01 11 1111111 12334445667777666655444443332 1111111 11112110
Q ss_pred -EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEE-EEEe-cCCCCCEEEEEECCCcEE--------E
Q 000700 1182 -TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVG-ISFQ-PGLDPAKIVSASQAGDIQ--------F 1250 (1344)
Q Consensus 1182 -~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~s-va~s-p~~~g~~Lasgs~DG~I~--------I 1250 (1344)
-+ -+..+..++.||.+.-+| ..++ .+....+ +++|.. -+.+ |. .+.+..+..+..+. +
T Consensus 185 plc---v~~sv~i~~VdG~l~~f~-~sG~-qvwr~~t----~GpIf~~Pc~s~Ps--~q~i~~~~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 185 PLC---VGSSVIITTVDGVLTSFD-ESGR-QVWRPAT----KGPIFMEPCESRPS--CQQISLENENCFCAPLPIAGHLL 253 (354)
T ss_pred cee---ccceEEEEEeccEEEEEc-CCCc-EEEeecC----CCceecccccCCCc--ceEEEEecCCeEEEeccccceEE
Confidence 01 134566677777777777 4444 2222211 123221 1111 33 34555554443332 3
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEE---
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHR----HAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT--- 1323 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~sp----dg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~sla--- 1323 (1344)
|..+.+ .....+- .+-...++|. ..+++..++.||.+.|.-.... +..+.. |.+- -+.+..+.
T Consensus 254 w~~~~g-~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s-l~~~~s-~~g~----lq~~~~~el~~ 323 (354)
T KOG4649|consen 254 WATQSG-TTLHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS-LAEISS-NGGE----LQNLEAIELSN 323 (354)
T ss_pred EEecCC-cEEEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEeccc-cccccc-CCCc----cceEEEeecCc
Confidence 444433 1111111 0001122222 1346777889999888843221 233332 3211 12222222
Q ss_pred --E-ecC--CCEEEEEECCCeEEEcC
Q 000700 1324 --F-HPY--QVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1324 --f-spd--g~~Lasgs~Dg~I~IWd 1344 (1344)
| +|. +.+|..|+.|..|+-||
T Consensus 324 eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 324 EIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred ccccCCeEEccEEEEEEccCeEEEEe
Confidence 2 121 24577788999999886
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.6e-05 Score=92.12 Aligned_cols=233 Identities=22% Similarity=0.288 Sum_probs=144.4
Q ss_pred CeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-----CC
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-----EV 1152 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-----~D 1152 (1344)
.+.|+++.-..+..++++|..+|.|-+-........ .+...+++....++ ++|++-+..++++| .|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~----lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTS----LAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccc----cccccccHHHHHhhhhhhccc
Confidence 566666633345568889999999999887653332 22335677777776 88987655555554 35
Q ss_pred CeEEEEECCCCce-eee--eecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEE
Q 000700 1153 SSIMLWDLEKEQQ-MVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGIS 1229 (1344)
Q Consensus 1153 g~I~VWDl~~~~~-~v~--~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva 1229 (1344)
..+.|||+.+.-. +.. .+.+.......+++ +..+.+++.+|.....+.++|+|........+. +..+.++.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~c-wlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-----Tk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVC-WLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-----TKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccc-cccCcchhhcccccchhhhhhhhhhhhhhhhhh-----hhhcccce
Confidence 6799999987620 111 12222223356774 447888999999999999999995432222221 24577788
Q ss_pred EecCCCCCEEEEEECCCcEEEEE-CCCCccceEEEecCCC----CeEEEEEcCCCC-EEEEEeC-CCeEEEEeCC--C--
Q 000700 1230 FQPGLDPAKIVSASQAGDIQFLD-IRNHKDAYLTIDAHRG----SLSALAVHRHAP-IIASGSA-KQLIKVFSLE--G-- 1298 (1344)
Q Consensus 1230 ~sp~~~g~~Lasgs~DG~I~IWD-lr~~~~~v~tl~~h~~----~Vtsla~spdg~-~LasgS~-Dg~I~Iwd~~--g-- 1298 (1344)
+.|- .+.++++-. ||.|.+|| .++-..++.++..... .+..++|.|... .+++.+. .++|+.||+. +
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 8885 366776655 99999999 5554455554443332 489999999654 4555544 4789999842 1
Q ss_pred ---ceEEEEeccCCcccc---ccCCCeEEEEEecCC
Q 000700 1299 ---EQLGTIRYHHPSFMA---QKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1299 ---~~l~~l~~~h~~f~~---~~~~~V~slafspdg 1328 (1344)
+.-..+.. ...|.- ...+.|.+..||+..
T Consensus 281 ~s~nn~~~~~~-~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 281 GSANNSVFVNY-ESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccccccceeee-cccccccccccccceeecCcCcCC
Confidence 11111111 111111 224678888888765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.3e-05 Score=92.81 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=131.0
Q ss_pred EEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
..++|..++ ...++++| +.+.+.|++|+..|.|++|++.+ |..+ ....+|...++. +.-+.+|.
T Consensus 1093 ~w~~frd~~---~~fTc~af--s~~~~hL~vG~~~Geik~~nv~s--G~~e-----~s~ncH~SavT~----vePs~dgs 1156 (1516)
T KOG1832|consen 1093 SWRSFRDET---ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSS--GSME-----ESVNCHQSAVTL----VEPSVDGS 1156 (1516)
T ss_pred cchhhhccc---cceeeEEe--ecCCceEEeeeccceEEEEEccC--cccc-----cccccccccccc----ccccCCcc
Confidence 344566677 78999999 67899999999999999999977 3333 236788888877 56666777
Q ss_pred eEEEEEC-C-CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1145 YLYASGE-V-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1145 ~Llagg~-D-g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
.+++.+. . --..+|++..--...+.+.+. .++ -++.....-+.|+....+.+||+.+...+...+....+..
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed-----~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFDED-----KAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccccc-----cee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 7777653 2 257799987533255555542 344 2333334445566667789999999875443332222222
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
..-+++.|+|. ...++ .|| .+||+|.. +.+..|......+ .=.|||+|.-++..+ .|||+.
T Consensus 1231 y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~-~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPC--DTLIL---NDG--VLWDVRIP-EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred hhccccccCCC--cceEe---eCc--eeeeeccH-HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhH
Confidence 33467889998 66655 344 48999987 6776666443222 236999999888766 478853
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0077 Score=77.78 Aligned_cols=200 Identities=18% Similarity=0.138 Sum_probs=131.4
Q ss_pred CCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEEC--
Q 000700 1128 PGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV-- 1205 (1344)
Q Consensus 1128 ~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDl-- 1205 (1344)
..|.+ +.|..+...++++...|.|.+-|..+.. ..+-+..+..|.++ .|++++..++..+.++++.+-+-
T Consensus 69 ~~i~s----~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg~vd~GI~aa-swS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVS----VQFLADTNSICVITALGDIILVDPETLE---LEIVGNVDNGISAA-SWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEE----EEEecccceEEEEecCCcEEEEcccccc---eeeeeeccCceEEE-eecCCCcEEEEEeCCcEEEEEeccc
Confidence 45555 8888899999999999999998887755 33444445558888 78999999999988888766432
Q ss_pred --CCCCee----------e--------EeecCCCC------------------CCCCeEEEEEecCCCCCEEEEEE----
Q 000700 1206 --RTPDML----------V--------CSTRPHTQ------------------QVERVVGISFQPGLDPAKIVSAS---- 1243 (1344)
Q Consensus 1206 --r~~~~~----------v--------~~~~~~~~------------------h~~~I~sva~sp~~~g~~Lasgs---- 1243 (1344)
-..+.. + ..++...| ..+.=++|+|.-+ |.++++..
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESE 218 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEecc
Confidence 111101 0 01110000 0112235888777 99998843
Q ss_pred -CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEE---eCCCeEEEEeCCCceEEEEeccCCccccccCCCe
Q 000700 1244 -QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG---SAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSV 1319 (1344)
Q Consensus 1244 -~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Lasg---S~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V 1319 (1344)
....|++||-. + ..-.+-....+.-.+++|-|.|..+|+- +.|+.|.+|..+|-.-..+.- . +. .....|
T Consensus 219 ~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l-~--~p-~de~~v 292 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL-P--FP-LDEKEV 292 (1265)
T ss_pred CCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccccc-C--Cc-ccccch
Confidence 23789999987 3 2222222233445689999999999885 456789999988866444332 0 11 122349
Q ss_pred EEEEEecCCCEEEE---EECCCeEEEc
Q 000700 1320 NCLTFHPYQVLLAA---GSADACVSIH 1343 (1344)
Q Consensus 1320 ~slafspdg~~Las---gs~Dg~I~IW 1343 (1344)
..++|+.++..||+ ......|++|
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEE
Confidence 99999999999998 4445559998
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.6e-05 Score=90.58 Aligned_cols=250 Identities=14% Similarity=0.173 Sum_probs=145.7
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCcE--EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE----CCCeEE
Q 000700 1032 KGTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----CNGNIR 1103 (1344)
Q Consensus 1032 ~~I~~l~fsp--dg~~Latgs~dg~I~VWd~~tg~~--l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----~DG~Ir 1103 (1344)
..+.|+++.. +..++++|..+|.|.+-......- -.....+. ..+++++|. +-|.+.|++|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a---r~Ct~lAwn-eLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA---RPCTSLAWN-ELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc---ccccccccc-cccHHHHHhhhhhhcccCCcc
Confidence 3566777544 445889999999999987653321 12233444 688999994 56778888874 356799
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
|||+...-..+.-. +.-..+...... +++|..+...+++|...+.+.++|++........+.. . .|..++.
T Consensus 133 Iwdi~s~ltvPke~--~~fs~~~l~gqn----s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k-~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLTVPKES--PLFSSSTLDGQN----SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--K-YVQGITV 203 (783)
T ss_pred ceecccccCCCccc--cccccccccCcc----ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--h-hccccee
Confidence 99997631111111 111111222233 3889877888888888889999999854312233332 1 1455533
Q ss_pred EcCCCCEEEEEECCCeEEEEE-CCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCcc---
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYD-VRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD--- 1258 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwD-lr~~~~~v~~~~~~~-~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~--- 1258 (1344)
.+-.++++++-. ||.|.+|| .+.-+.........+ .....+..++|.|...|...+..-..++|+++|++....
T Consensus 204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s 282 (783)
T KOG1008|consen 204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGS 282 (783)
T ss_pred cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccc
Confidence 333677877655 99999999 555443433321111 112358899999983333333444558899999874321
Q ss_pred ----ceEE------EecCC--CCeEEEEEcCCCC--EEEEEeCCCeEEEEe
Q 000700 1259 ----AYLT------IDAHR--GSLSALAVHRHAP--IIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1259 ----~v~t------l~~h~--~~Vtsla~spdg~--~LasgS~Dg~I~Iwd 1295 (1344)
.... ++... ..|.+..||+..+ ...++..+-.++-++
T Consensus 283 ~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~ 333 (783)
T KOG1008|consen 283 ANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFS 333 (783)
T ss_pred ccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhcc
Confidence 1111 12112 4678888887552 333444444444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.04 Score=63.20 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=116.6
Q ss_pred EEEecCCCeEEEEE-----CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE----------------
Q 000700 1137 VDWQQQSGYLYASG-----EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF---------------- 1195 (1344)
Q Consensus 1137 v~ws~~~~~Llagg-----~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs---------------- 1195 (1344)
-.|++++..|+++- ..|.|-|||....-..+.++..+.-. -..+ .+.++|..|+++-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG-PHel-~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG-PHEL-LLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC-hhhE-EEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 57889999999983 35889999999433277788876544 3444 4567887776653
Q ss_pred --CCCeEEEEECCCCCeeeEeecC-CCCCCCCeEEEEEecCCCCCEEEEEECCCc-------EEEEECCCCccceEEEe-
Q 000700 1196 --VDGSVRLYDVRTPDMLVCSTRP-HTQQVERVVGISFQPGLDPAKIVSASQAGD-------IQFLDIRNHKDAYLTID- 1264 (1344)
Q Consensus 1196 --~DGsVrIwDlr~~~~~v~~~~~-~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-------I~IWDlr~~~~~v~tl~- 1264 (1344)
.+.++.+.|.++++ ++..+.. ...|...|.-+++.++ |..++..-..|. |-+++... .+..+.
T Consensus 134 ~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~--G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~ 207 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHLAVDGD--GTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPA 207 (305)
T ss_pred hhcCCceEEEecCCCc-eeeeeecCccccccceeeEEecCC--CcEEEEEecCCCCCccCCeEEEEcCCC---cceeccC
Confidence 23355566777776 3333311 1346778999999988 776665544433 33443332 222222
Q ss_pred ------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1265 ------AHRGSLSALAVHRHAPIIASGS-AKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1265 ------~h~~~Vtsla~spdg~~LasgS-~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.-.+.+-+|++++++.++++.| ..+.+.+|| .+|+.+..... ..+..++-.+++ ++++.+.
T Consensus 208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence 2246789999999998776554 567899998 56776666554 346677776666 5665544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0033 Score=77.84 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=117.5
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCC
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~ 1222 (1344)
+..++-|..+|.|++++..... .+...|+.+ ..+|.++++|+.||+|.|..+-+.+ ..... .+ .
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~-df---~ 112 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD-EITQY-DF---K 112 (846)
T ss_pred cceeeeccccceEEEEecCCcc---ccccccccc--------ccCCceEEEecCCCcEEEeeccCCc-cceeE-ec---C
Confidence 6788888999999999876442 222233221 5579999999999999999888776 33333 23 2
Q ss_pred CCeEEEEEecC---CCCCEEEEEECCCcEEEEECCCCccceE-EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC-C
Q 000700 1223 ERVVGISFQPG---LDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-E 1297 (1344)
Q Consensus 1223 ~~I~sva~sp~---~~g~~Lasgs~DG~I~IWDlr~~~~~v~-tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~-~ 1297 (1344)
.++.+|+++|+ ...+.+++|+..| +.++.-+-.+.... .+....|+|.++.|. |.++|=++.+| |+|||+ .
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccc
Confidence 78999999998 3467899999999 77776543321111 355567899999995 67888877766 899995 5
Q ss_pred CceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1298 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1298 g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
++.+..+...+. - ......-..+.|.++..+++- +..+|+|
T Consensus 189 ~~~l~~i~~p~~-~-~R~e~fpphl~W~~~~~LVIG--W~d~v~i 229 (846)
T KOG2066|consen 189 RQRLTNIPPPSQ-S-VRPELFPPHLHWQDEDRLVIG--WGDSVKI 229 (846)
T ss_pred cceeeccCCCCC-C-CCcccCCCceEecCCCeEEEe--cCCeEEE
Confidence 666666655221 1 111123345778776655443 3334554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0065 Score=77.93 Aligned_cols=208 Identities=19% Similarity=0.202 Sum_probs=126.3
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEE-ECCCeE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSI 1155 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llag-g~Dg~I 1155 (1344)
....+|+..-..|..+++-|+ .|-|++... .+..+..+.+..+....+......-.+-..++...|+.. .....|
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~-~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGS---KIGVFKNTD-DDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CccceeEeeeccCceEEECCC---cEeEEECCC-CCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 344555552112344444332 477777653 233444444333332222111111113333444555554 356789
Q ss_pred EEEECCCCceeeeeecCCCCCCeeEEEEEc----CCCCEEEEEECCCeEEEEECCCCC-eeeEe-ecCCCCCCCCeEEEE
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQ----VHGGQLAAGFVDGSVRLYDVRTPD-MLVCS-TRPHTQQVERVVGIS 1229 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s----~dg~~L~sGs~DGsVrIwDlr~~~-~~v~~-~~~~~~h~~~I~sva 1229 (1344)
+-.|+++++ .+..+..+...+|..+.-.. -.+.....|-.+..+..||.|-.. .++.. .+.+ ......+|++
T Consensus 507 y~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~a 584 (794)
T PF08553_consen 507 YKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFA 584 (794)
T ss_pred EEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEE
Confidence 999999999 99999998877677772211 124456778888999999999643 23321 1111 2335566776
Q ss_pred EecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1230 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1230 ~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
-+. ..+||+|+.+|.||+||- .+......+.+-..+|.+|+++.||+++++.+. ..+.+++
T Consensus 585 Tt~---~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 585 TTE---DGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ecC---CceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 654 568999999999999994 333445556677889999999999998876654 5666776
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.053 Score=66.06 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1220 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1220 ~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
...+.|.+++++|+ ...++.|+.||.|.+||...+ +.......-..+.++|||+|.++++|+..|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~--E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPS--EDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcc--cceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 34588999999999 999999999999999999865 2223334456789999999999999999999999995
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0052 Score=76.23 Aligned_cols=145 Identities=15% Similarity=0.264 Sum_probs=102.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEECCCeEEEEeccCCCCcee
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASCNGNIRIWKDYDQKDKQK 1115 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~DG~IrIWdl~~~~~~~~ 1115 (1344)
.+|.++++++.||+|.|-.+.+.+...++.-+. .+.++++ +|+ .+.+++||..| +.++.-.-.+.+..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r----piksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR----PIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS 153 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecCC----cceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccc
Confidence 368999999999999999998888877776665 7899999 455 57899999988 66654322111111
Q ss_pred EEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-----CeeEEEEEcCCCCE
Q 000700 1116 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-----SISALTASQVHGGQ 1190 (1344)
Q Consensus 1116 lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~-----~VtsL~~~s~dg~~ 1190 (1344)
. .+....+.|.+ +.|. |..++-+.++| |+|||+.+++ .+..++..+.. .-..+ .|. +...
T Consensus 154 v-----~l~~~eG~I~~----i~W~--g~lIAWand~G-v~vyd~~~~~-~l~~i~~p~~~~R~e~fpphl-~W~-~~~~ 218 (846)
T KOG2066|consen 154 V-----VLSEGEGPIHS----IKWR--GNLIAWANDDG-VKVYDTPTRQ-RLTNIPPPSQSVRPELFPPHL-HWQ-DEDR 218 (846)
T ss_pred e-----eeecCccceEE----EEec--CcEEEEecCCC-cEEEeccccc-eeeccCCCCCCCCcccCCCce-Eec-CCCe
Confidence 1 24555667777 8885 77888888887 9999999998 77776654432 12234 343 4556
Q ss_pred EEEEECCCeEEEEECCCC
Q 000700 1191 LAAGFVDGSVRLYDVRTP 1208 (1344)
Q Consensus 1191 L~sGs~DGsVrIwDlr~~ 1208 (1344)
++.|=.| +|++..++.+
T Consensus 219 LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEecCC-eEEEEEEecc
Confidence 7777655 7899988833
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.057 Score=60.93 Aligned_cols=211 Identities=13% Similarity=0.198 Sum_probs=117.9
Q ss_pred cccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeE
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSV 1200 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsV 1200 (1344)
.+.+....+.+ ++|+++++.|++.. ..+.|..++.. ++ .+..++.......-.|+. -.++.++++.-.++.+
T Consensus 16 ~l~g~~~e~SG----LTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y-~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSG----LTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITY-LGNGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEE----EEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEE
T ss_pred ECCCccCCccc----cEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEE-ECCCEEEEEEcCCCcE
Confidence 35566666777 99999988887775 56788888864 56 677776544334677744 3455555544458999
Q ss_pred EEEECCCCCe-----eeEeec--CCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC--CccceEEEe-------
Q 000700 1201 RLYDVRTPDM-----LVCSTR--PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN--HKDAYLTID------- 1264 (1344)
Q Consensus 1201 rIwDlr~~~~-----~v~~~~--~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~--~~~~v~tl~------- 1264 (1344)
.++++..... ....+. ....++..+-.++|++. ++.|+.+-...-..+|.++. ....+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~--~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK--TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETT--TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCC--CCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 9998843221 111121 12235567999999998 77777777766677777664 111221111
Q ss_pred -cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCceEEEEeccCCcccc--ccCCCeEEEEEecCCCEEEEEECCCeE
Q 000700 1265 -AHRGSLSALAVHRHA-PIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAAGSADACV 1340 (1344)
Q Consensus 1265 -~h~~~Vtsla~spdg-~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~--~~~~~V~slafspdg~~Lasgs~Dg~I 1340 (1344)
..-..+.+++++|.. .+++....+..|.++|.+|+.+..+.- ..++.+ ......-.|+|.++|.+.+++ +-+..
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L-~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSL-DRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE--STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEe-CCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 123468899999964 466777778899999999998887765 443322 334567899999999666554 66665
Q ss_pred EEc
Q 000700 1341 SIH 1343 (1344)
Q Consensus 1341 ~IW 1343 (1344)
.+|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0083 Score=69.22 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=128.0
Q ss_pred hhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHH
Q 000700 499 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 578 (1344)
Q Consensus 499 fpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 578 (1344)
+|-+.--.++...|-|.-+.+-+.-.+....+++ ++++-+|..-.+.+|++.+ +++|..+|.+|+...+|+|..|..
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAn-dl~~~ggl~~ll~~l~~~~--~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNAN-DLISLGGLVPLLGYLENSD--AELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHH-hHhhccCHHHHHHHhcCCc--HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444433344455666678888877777666665 7889999999999888776 499999999999999999999999
Q ss_pred HHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccC--CCHHHHHHHHHHH
Q 000700 579 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE--PQPEVRASAVFSL 656 (1344)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D--~sP~VRaa~v~aL 656 (1344)
.++.++...++..|.. +..-.+|.-+.++++.|+.+++.+.....+.+-...|...+++ .++..+.=+++.+
T Consensus 162 v~E~~~L~~Ll~~ls~------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILSS------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHcc------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999984 5566789999999999999999999988887778889999977 6777777788888
Q ss_pred hhhccc
Q 000700 657 GTLLDI 662 (1344)
Q Consensus 657 ~~~i~~ 662 (1344)
+.++..
T Consensus 236 ~~Ll~~ 241 (342)
T KOG2160|consen 236 SLLLQE 241 (342)
T ss_pred HHHHHh
Confidence 888843
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.16 Score=61.93 Aligned_cols=247 Identities=12% Similarity=0.186 Sum_probs=132.2
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECC----------C-cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEE
Q 000700 1025 CWDTRFEKGTKTALLQPFSPIVVAADEN----------E-RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL 1093 (1344)
Q Consensus 1025 ~Wd~~~~~~I~~l~fspdg~~Latgs~d----------g-~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L 1093 (1344)
.|+.+....=..++..|.|..+|...++ . .|.||+.. |+.+.++.-.. +.|.++.| .. ...|
T Consensus 22 ~W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~---~~iv~~~w--t~-~e~L 94 (410)
T PF04841_consen 22 SWSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS---GRIVGMGW--TD-DEEL 94 (410)
T ss_pred CCCccccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC---CCEEEEEE--CC-CCeE
Confidence 3655443323455667777777766533 2 48999876 77887766554 68999999 44 5666
Q ss_pred EEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEE-ECCCCceeee---e
Q 000700 1094 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW-DLEKEQQMVN---P 1169 (1344)
Q Consensus 1094 ~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VW-Dl~~~~~~v~---~ 1169 (1344)
++-..||.+++||..... ...+. ... ....|....+...+...+|.++..+ ++.+.+. +..... ... .
T Consensus 95 vvV~~dG~v~vy~~~G~~-~fsl~---~~i--~~~~v~e~~i~~~~~~~~GivvLt~-~~~~~~v~n~~~~~-~~~~~~~ 166 (410)
T PF04841_consen 95 VVVQSDGTVRVYDLFGEF-QFSLG---EEI--EEEKVLECRIFAIWFYKNGIVVLTG-NNRFYVVNNIDEPV-KLRRLPE 166 (410)
T ss_pred EEEEcCCEEEEEeCCCce-eechh---hhc--cccCcccccccccccCCCCEEEECC-CCeEEEEeCccccc-hhhcccc
Confidence 677799999999985411 00000 000 1111111000011222345444443 3333333 333221 111 1
Q ss_pred ecCCCC-----CCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC
Q 000700 1170 IPSSSD-----CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ 1244 (1344)
Q Consensus 1170 i~~~~~-----~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~ 1244 (1344)
++.... .....+.....+....+....++.+.+.|-...+. . ...+++..+++||+ |+++|.-..
T Consensus 167 ~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i----~~~~~i~~iavSpn--g~~iAl~t~ 236 (410)
T PF04841_consen 167 IPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----I----DSDGPIIKIAVSPN--GKFIALFTD 236 (410)
T ss_pred CCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----c----cCCCCeEEEEECCC--CCEEEEEEC
Confidence 111100 00111112333445555555666666555333221 1 11368999999999 999999999
Q ss_pred CCcEEEEECCCCccceEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCc
Q 000700 1245 AGDIQFLDIRNHKDAYLTIDAH-RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGE 1299 (1344)
Q Consensus 1245 DG~I~IWDlr~~~~~v~tl~~h-~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~ 1299 (1344)
+|.+.+.+..-. +.+..+... ......+.|..+..+++.- ...|.+....+.
T Consensus 237 ~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~ 289 (410)
T PF04841_consen 237 SGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGD 289 (410)
T ss_pred CCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCC
Confidence 999999987655 566666544 3456778887655444333 344555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.087 Score=61.23 Aligned_cols=262 Identities=15% Similarity=0.174 Sum_probs=157.0
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE----------CCCeEEEEeccCCCCceeEEeeeec
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs----------~DG~IrIWdl~~~~~~~~lvs~~~~ 1122 (1344)
+.+.|+|.++++.+..+...- .-.+.. +++++.+++++ ..-.|.+||..+..-..++.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----- 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----- 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE-----
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe-----
Confidence 479999999999888887644 233455 68999888754 23479999997743333333
Q ss_pred ccCC-CC-CccccceEEEEecCCCeEEEEE--CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC
Q 000700 1123 IQGH-KP-GVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1198 (1344)
Q Consensus 1123 l~~h-~~-~V~s~~~~v~ws~~~~~Llagg--~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG 1198 (1344)
++.. .. .+.... .+..+.+++++++.. -...|.|-|+...+ .+..+... . ...+ ++..++-|.+-|.||
T Consensus 85 iP~k~R~~~~~~~~-~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~P--G-C~~i--yP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 85 IPPKPRAQVVPYKN-MFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTP--G-CWLI--YPSGNRGFSMLCGDG 157 (342)
T ss_dssp ETTS-B--BS--GG-GEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGT--S-EEEE--EEEETTEEEEEETTS
T ss_pred cCCcchheeccccc-ceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCC--C-EEEE--EecCCCceEEEecCC
Confidence 2221 11 111111 267788888888874 45679999999988 88777763 2 2223 444456789999999
Q ss_pred eEEEEECCC-CCeeeEeecCCCCCCCCeE-EEEEecCCCCCEEEEEECCCcEEEEECCCCc-cceEEEecC---------
Q 000700 1199 SVRLYDVRT-PDMLVCSTRPHTQQVERVV-GISFQPGLDPAKIVSASQAGDIQFLDIRNHK-DAYLTIDAH--------- 1266 (1344)
Q Consensus 1199 sVrIwDlr~-~~~~v~~~~~~~~h~~~I~-sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-~~v~tl~~h--------- 1266 (1344)
++.-..+.. ++...+..+.+..-..++. .-++... +..++--+.+|.|+--|+.... +....+..-
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCc
Confidence 999998883 4322221112211122332 3344444 5566668899999999988653 122223211
Q ss_pred -CCCeEEEEEcCCCCEEEEE---eC-----CC--eEEEEe-CCCceEEEEeccCCccccccCCCeEEEEEecCCC-EEEE
Q 000700 1267 -RGSLSALAVHRHAPIIASG---SA-----KQ--LIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV-LLAA 1333 (1344)
Q Consensus 1267 -~~~Vtsla~spdg~~Lasg---S~-----Dg--~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~-~Las 1333 (1344)
.+...-+++|+....|..- +. |+ .|-+|| .+++.+..+.. ...+.+|+.+.+.+ +|.+
T Consensus 236 rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 236 RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEEESSSS-EEEE
T ss_pred CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEEccCCCcEEEE
Confidence 1233457888765544332 11 22 366667 46788888874 13578999998874 6655
Q ss_pred EE-CCCeEEEcC
Q 000700 1334 GS-ADACVSIHS 1344 (1344)
Q Consensus 1334 gs-~Dg~I~IWd 1344 (1344)
.+ .++.+.|||
T Consensus 307 ~~~~~~~l~v~D 318 (342)
T PF06433_consen 307 LSAGDGTLDVYD 318 (342)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEe
Confidence 54 478999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.14 Score=56.44 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=92.5
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeec
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~ 1122 (1344)
..+++.|+..+.+.--|.++|+.+..-... .+|.+-+.. -|++++.|...|.+.+.+..+...-... ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f----~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNF----VI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeee----ee
Confidence 457888999999999999999887653322 245444432 3778999999999999988762111111 11
Q ss_pred ccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEE
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL 1202 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrI 1202 (1344)
. ..|.+. ....++++.+..|+.|+..+..|.++.. ++...+......+.- ...+....+.++...|.|.-
T Consensus 92 ~----~~vk~~---a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP--~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 92 L----ETVKVR---AQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP--VIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred h----hhhccc---eEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc--eecCCCceEEEEeccceEEE
Confidence 1 222221 2334579999999999999999999998 888776543321111 23343334555555666655
Q ss_pred EECCCC
Q 000700 1203 YDVRTP 1208 (1344)
Q Consensus 1203 wDlr~~ 1208 (1344)
-.....
T Consensus 162 vt~~~~ 167 (354)
T KOG4649|consen 162 VTKNPY 167 (354)
T ss_pred EccCCC
Confidence 555443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.046 Score=62.77 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=123.6
Q ss_pred EEEecCCCeEEEE-ECC-CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCC
Q 000700 1137 VDWQQQSGYLYAS-GEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-----VDGSVRLYDVRTPD 1209 (1344)
Q Consensus 1137 v~ws~~~~~Llag-g~D-g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs-----~DGsVrIwDlr~~~ 1209 (1344)
++.+|.....++- -.- ....+||.++++ ....+....+.-.+.=..++++|++|++.= ..|.|-|||.+..-
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~-~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQ-LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCc-eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 5566655544444 333 357899999998 776666543332222235789999999864 35899999999433
Q ss_pred eeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEEC------------------CCcEEEEECCCCccceEEEe----cCC
Q 000700 1210 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ------------------AGDIQFLDIRNHKDAYLTID----AHR 1267 (1344)
Q Consensus 1210 ~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~------------------DG~I~IWDlr~~~~~v~tl~----~h~ 1267 (1344)
..+..+ ..|.-.-..+.+.|+ |+.|+++.- +-.+.+.|.+++ +.+.... .|.
T Consensus 89 ~ri~E~---~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 89 RRIGEF---PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQ 162 (305)
T ss_pred EEEeEe---cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccc
Confidence 234444 333455567888898 877776631 234556666766 5555533 367
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe-------EEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC-CCe
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQL-------IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DAC 1339 (1344)
Q Consensus 1268 ~~Vtsla~spdg~~LasgS~Dg~-------I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~-Dg~ 1339 (1344)
-.|+-++++++|.+++..-..|. |-+++.. +.+..+.. .......-.+.+-+|++++++.++++.+- .|.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 78999999999887776544332 3333322 22333322 11111123368999999999987766655 788
Q ss_pred EEEcC
Q 000700 1340 VSIHS 1344 (1344)
Q Consensus 1340 I~IWd 1344 (1344)
+.+||
T Consensus 241 ~~~~d 245 (305)
T PF07433_consen 241 VAVWD 245 (305)
T ss_pred EEEEE
Confidence 99985
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=65.13 Aligned_cols=278 Identities=12% Similarity=0.031 Sum_probs=146.4
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCC--CC-CCe--EEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEE
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDF--PD-KGI--SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLV 1117 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~--~~-~~I--tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lv 1117 (1344)
+..+.+++.++.|.-.|.++|+.+-++..... .. ..+ ..+.. .++..++.++.+|.|.-+|..+ ++..-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~T--G~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAET--GKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCC--CCEeee
Confidence 45677777789999999999998877765431 00 001 11122 1237888888999999999876 433222
Q ss_pred eeeecccCC---CCCccccceEEEEecCCCeEEEEE---------CCCeEEEEECCCCceeeeeecCCCC----------
Q 000700 1118 TAFSSIQGH---KPGVRCSNVVVDWQQQSGYLYASG---------EVSSIMLWDLEKEQQMVNPIPSSSD---------- 1175 (1344)
Q Consensus 1118 s~~~~l~~h---~~~V~s~~~~v~ws~~~~~Llagg---------~Dg~I~VWDl~~~~~~v~~i~~~~~---------- 1175 (1344)
+ ....+ ...+.+.. .. .++.+++++ .+|.+..+|..+++ .+-.+.....
T Consensus 136 --~-~~~~~~~~~~~i~ssP---~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 136 --F-GNNDQVPPGYTMTGAP---TI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-LLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred --e-cCCCCcCcceEecCCC---EE--ECCEEEEeccccccccCCCCcEEEEEECCCCc-eeeEeeccCCCcCCCCCCCC
Confidence 0 11111 00122211 11 135666654 36789999999988 6655543211
Q ss_pred ---------CCeeEEEEEcCCCCEEEEEECCC------------------eEEEEECCCCCeeeEeecCCCCCCCC----
Q 000700 1176 ---------CSISALTASQVHGGQLAAGFVDG------------------SVRLYDVRTPDMLVCSTRPHTQQVER---- 1224 (1344)
Q Consensus 1176 ---------~~VtsL~~~s~dg~~L~sGs~DG------------------sVrIwDlr~~~~~v~~~~~~~~h~~~---- 1224 (1344)
..|.+--..++.+..++.++.++ .|.-+|..+++...+.. . ..|..+
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~-~-~~~~~~~~~~ 284 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ-T-TPHDLWDYDG 284 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee-C-CCCCCccccc
Confidence 11111112334567788887776 79999999998544321 1 111111
Q ss_pred eEEEEEecC--CCCC---EEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEE--------------
Q 000700 1225 VVGISFQPG--LDPA---KIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG-------------- 1285 (1344)
Q Consensus 1225 I~sva~sp~--~~g~---~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Lasg-------------- 1285 (1344)
.....+.+. .++. .++.++.+|.+...|.+++ +.+-..... ...++.+| +.+++.+
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEee---ccccccCC-ceEEEccccccccCcccccCC
Confidence 000111110 0132 6788889999999999998 666554321 11233343 2222211
Q ss_pred ---eCCCeEEEEe-CCCceEEEEeccCCcc-ccccCCCe--EEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1286 ---SAKQLIKVFS-LEGEQLGTIRYHHPSF-MAQKIGSV--NCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1286 ---S~Dg~I~Iwd-~~g~~l~~l~~~h~~f-~~~~~~~V--~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..+|.+.-.| .+|+.+-+... .... ......+. ..++ -.+..|++++.||.|..+|
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~-~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKRE-GTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeC-CccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 2356677777 45666655543 1000 00000011 1122 2446777777888887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0066 Score=69.92 Aligned_cols=253 Identities=11% Similarity=0.070 Sum_probs=133.9
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1029 RFEKGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
.++..|..++|+|+.. ++..++-+..|+|.|+++...+..+..+. .+++++|. -.+.++++.|-.+|.|.|||+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~wSC~wD-lde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QIWSCCWD-LDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cceeeeec-cCCcceeEEeccCceEEEEEc
Confidence 3456799999999988 78889999999999999999998888876 89999994 345788999999999999999
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceE--EEEecCCCeEEEEECCCeEEEEECCCCce-eeeeecCCCCCCeeEEEEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGEVSSIMLWDLEKEQQ-MVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~--v~ws~~~~~Llagg~Dg~I~VWDl~~~~~-~v~~i~~~~~~~VtsL~~~ 1184 (1344)
....+......+ .-...+|..+... -.-.+.++.++.+..+ ...|.+.-... .....+....+...++...
T Consensus 266 R~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~ 339 (463)
T KOG1645|consen 266 RQPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYH 339 (463)
T ss_pred cCCCchHhhhhh----hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeec
Confidence 764332211100 0011112110000 0011234444444332 45565432210 2222222222334455333
Q ss_pred cCCCCEEEEEECCC------eEEE-EECCCCCeeeEeecCCCCC-CCC--eEEEEE-ecCCCCCEEEEEECCCcEEEEEC
Q 000700 1185 QVHGGQLAAGFVDG------SVRL-YDVRTPDMLVCSTRPHTQQ-VER--VVGISF-QPGLDPAKIVSASQAGDIQFLDI 1253 (1344)
Q Consensus 1185 s~dg~~L~sGs~DG------sVrI-wDlr~~~~~v~~~~~~~~h-~~~--I~sva~-sp~~~g~~Lasgs~DG~I~IWDl 1253 (1344)
...+..+++.-.+. .|-. -|-+.+.......+++.|. ... -+..-+ .++ +.-.+.+|...+.+.+||.
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~-nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVED-NNYIVVVGDSTNELILQDP 418 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccc-ccEEEEecCCcceeEEecc
Confidence 32233333322211 0111 1222332121111111110 000 011112 233 2333445666788999999
Q ss_pred CCCccceEEEecCCCCeEEEEEcC-CC-CEEEEEeCCCeEEEEeC
Q 000700 1254 RNHKDAYLTIDAHRGSLSALAVHR-HA-PIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1254 r~~~~~v~tl~~h~~~Vtsla~sp-dg-~~LasgS~Dg~I~Iwd~ 1296 (1344)
... +.+.++... .+|..+.... ++ .+|++-+ |..++||..
T Consensus 419 ~s~-evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 419 HSF-EVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred chh-heeeecccC-cceeecceeecCCcchhhhee-cceEEEEec
Confidence 988 777777643 5676665443 33 3666554 456777753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.078 Score=64.97 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=115.9
Q ss_pred CCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEE
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~ 1156 (1344)
.....+.+ +|+|++++++ .||...|+.... ...+ ....+....|.. .+.+++-...+.|.
T Consensus 33 ~~p~~ls~--npngr~v~V~-g~geY~iyt~~~--~r~k--------------~~G~g~~~vw~~-~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 33 IYPQSLSH--NPNGRFVLVC-GDGEYEIYTALA--WRNK--------------AFGSGLSFVWSS-RNRYAVLESSSTIK 92 (443)
T ss_dssp S--SEEEE---TTSSEEEEE-ETTEEEEEETTT--TEEE--------------EEEE-SEEEE-T-SSEEEEE-TTS-EE
T ss_pred cCCeeEEE--CCCCCEEEEE-cCCEEEEEEccC--Cccc--------------ccCceeEEEEec-CccEEEEECCCeEE
Confidence 34678888 7899999995 566777776322 1100 112223478987 66677777788899
Q ss_pred EEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCC
Q 000700 1157 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDP 1236 (1344)
Q Consensus 1157 VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g 1236 (1344)
|+.--++. .+..+.... .+..| +. |.+|...+. +.|.+||..+++ .++.+.. ..|..|.|+++ |
T Consensus 93 I~kn~~~~-~~k~i~~~~--~~~~I-f~---G~LL~~~~~-~~i~~yDw~~~~-~i~~i~v-----~~vk~V~Ws~~--g 156 (443)
T PF04053_consen 93 IYKNFKNE-VVKSIKLPF--SVEKI-FG---GNLLGVKSS-DFICFYDWETGK-LIRRIDV-----SAVKYVIWSDD--G 156 (443)
T ss_dssp EEETTEE--TT-----SS---EEEE-E----SSSEEEEET-TEEEEE-TTT---EEEEESS------E-EEEEE-TT--S
T ss_pred EEEcCccc-cceEEcCCc--ccceE-Ec---CcEEEEECC-CCEEEEEhhHcc-eeeEEec-----CCCcEEEEECC--C
Confidence 97433333 233444322 26667 33 777776654 489999999987 6666632 34899999999 9
Q ss_pred CEEEEEECCCcEEEEECCCC----------ccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEec
Q 000700 1237 AKIVSASQAGDIQFLDIRNH----------KDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1306 (1344)
Q Consensus 1237 ~~Lasgs~DG~I~IWDlr~~----------~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~ 1306 (1344)
.+++..+.+ .+.|++.... ...+..+..-...|.+..|..+ .++-.+.. .++- +-+.....+..
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ 230 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH 230 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE
Confidence 999988765 6777765522 0144444433567888888866 33333333 6665 33344444443
Q ss_pred cCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1307 HHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1307 ~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
-+ .++.=+.+.+....+.....|+.|..+
T Consensus 231 -ld-------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 231 -LD-------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp --S-------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -cC-------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 22 467777788877788888888877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=61.06 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=63.9
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcC
Q 000700 586 HVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFD 665 (1344)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~ 665 (1344)
+.+++.|.+ +++|.+|..++.+||++... .+...|..+++|++|.||.+++.+||.+=
T Consensus 2 ~~L~~~l~~------~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----- 59 (88)
T PF13646_consen 2 PALLQLLQN------DPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----- 59 (88)
T ss_dssp HHHHHHHHT------SSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhc------CCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----
Confidence 456777732 89999999999999976432 23457888999999999999999999872
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhc-cCCChhhHHHHHHHHH
Q 000700 666 SCRDGVEGDEECDDDEKIRAEISIIRSLLTVV-SDGSPLVRAEVAVALA 713 (1344)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~-~D~sp~VR~e~~~~ls 713 (1344)
+......|..+. +|.+..||.+++.+|+
T Consensus 60 --------------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --------------------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 112234455544 4567889999988875
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.066 Score=64.68 Aligned_cols=280 Identities=12% Similarity=0.112 Sum_probs=135.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccC--C
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD--Q 1110 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~--~ 1110 (1344)
.|+.+.|.++..-|++|...|.|.||.+...+... .+.. ..-..+.+. . ....++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~--~~~~~~~~~-----~---~~~~~~~~~l~di~~r~~ 69 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG---NREQ--PPDLDYNFR-----R---FSLNNSPGKLTDISDRAP 69 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------S-----GGGSS-SEEE-GGG--
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC---ccCC--CcccCcccc-----c---ccccCCCcceEEehhhCC
Confidence 58899999999999999999999999987543322 0110 011111110 0 001111222333322 0
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-------cCCCCCCeeEEEE
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-------PSSSDCSISALTA 1183 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i-------~~~~~~~VtsL~~ 1183 (1344)
.+-.+-..+...+....+.|++ ++.+ +=|.+++|..+|.+.|.|++... .+..- .......|+++.|
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vta----l~~S-~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTA----LKNS-DIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEE----EEE--BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEE
T ss_pred cccccccCchhheeccCCcEeE----EecC-CCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEE
Confidence 1100111222334445677776 5554 78999999999999999998776 55431 1223445777744
Q ss_pred E----cCCC---CEEEEEECCCeEEEEECCC---CCeeeEeecCCCCCCCCeEEEEE-ecCC------------------
Q 000700 1184 S----QVHG---GQLAAGFVDGSVRLYDVRT---PDMLVCSTRPHTQQVERVVGISF-QPGL------------------ 1234 (1344)
Q Consensus 1184 ~----s~dg---~~L~sGs~DGsVrIwDlr~---~~~~v~~~~~~~~h~~~I~sva~-sp~~------------------ 1234 (1344)
. ..|+ -.+++|+..|.+.+|.+.- +.-.+........+.+.|..+.. +.+.
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 2 2233 4688999999999998752 11112221111234566666653 2220
Q ss_pred CCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEE-----cCCCCEEEEEeCCCeEEEEeCCC-ceEEEEeccC
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAV-----HRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHH 1308 (1344)
Q Consensus 1235 ~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~-----spdg~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h 1308 (1344)
.-+-++....+..++++...+.+...+.++ ..-....+.+ ...+..|++-..+|.|++|.+-+ +.+..+.. .
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l-~ 301 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL-P 301 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--S
T ss_pred CcCcEEEEEcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC-C
Confidence 012244455577899999987743334442 2122233444 23566888889999999999654 56666554 2
Q ss_pred CccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1309 PSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1309 ~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.. .....+....++++|..++-.+.
T Consensus 302 ~~---~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 302 PP---LDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp S------HHHHTT-EE-TTS-EEEE-SS
T ss_pred Cc---cccccccccEECCCCCEEEEeCc
Confidence 21 11234455677888877665544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.022 Score=73.67 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=96.5
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhH
Q 000700 498 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQE 577 (1344)
Q Consensus 498 ifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~ 577 (1344)
.||.|+|+++++..|+|.|.-.-|.......|.- . ++ ..+.|.+=|++++ |..|+++.=.|+.|- .
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-a-lL---aINtl~KDl~d~N--p~IRaLALRtLs~Ir-------~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-A-LL---AVNTFLQDTTNSS--PVVRALAVRTMMCIR-------V 134 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-H-HH---HHHHHHHHcCCCC--HHHHHHHHHHHHcCC-------c
Confidence 5999999999999999988544444443333221 1 11 1345555555544 688888877776662 1
Q ss_pred HHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHh
Q 000700 578 ACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 657 (1344)
Q Consensus 578 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 657 (1344)
.-+-..+...+.+.|. |++|.||..+++|+.+++...++ ...+.+..+.|..+|+|.+|+|.+.++.+|.
T Consensus 135 ~~i~e~l~~~lkk~L~-------D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~ 204 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVA-------DPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC 204 (746)
T ss_pred HHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence 1122233444455566 88999999999999999987664 2234456667888999999999999999999
Q ss_pred hhcc
Q 000700 658 TLLD 661 (1344)
Q Consensus 658 ~~i~ 661 (1344)
.+..
T Consensus 205 eI~~ 208 (746)
T PTZ00429 205 EVND 208 (746)
T ss_pred HHHH
Confidence 8863
|
|
| >PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00025 Score=80.02 Aligned_cols=153 Identities=18% Similarity=0.288 Sum_probs=99.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhccC-CCceEEEEEcCCCCCCCC-CCceEEEeCc-cc
Q 000700 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA-KGERVLFHYNGHGVPKPT-ANGEIWLFNK-YI 218 (1344)
Q Consensus 142 ~~~~~~~i~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~-~~~r~lfhy~ghg~p~pt-~~g~i~~~~~-y~ 218 (1344)
+.+=.+.+.+.| +.+ .+.. ... ...|||.+++++.+..+-+.+ +.+.++|||-|||...+. ..+++..++. ++
T Consensus 20 ~~~D~~~~~~~L-~~~-gf~~-~~~-l~~~~t~~~i~~~l~~l~~~~~~~D~~~~yfsGHG~~~~~~~~~~~~~~d~~~~ 95 (248)
T PF00656_consen 20 AVNDAEAMAEAL-EKL-GFDV-ENI-LIDNATRANILKALRELLQRAQPGDSVVFYFSGHGIQVDGEGGDEDSGYDGYLL 95 (248)
T ss_dssp HHHHHHHHHHHH-HHT-TEEE-EEE-EEESSSHHHHHHHHHHHHTSGGTCSEEEEEEESEEETETTCCSTEEEETSSEEE
T ss_pred HHHHHHHHHHHH-HHc-CCce-eec-cccchHHHHHHHHHhhhhccCCCCCeeEEEEeccccccCCccCcccccccceee
Confidence 344455666666 222 1111 111 356999999999988886655 688999999999977543 3456666777 45
Q ss_pred ccc----HHHHHhhcC------CCeEEEEeCCchhhHHHHHHhhcccC-----------------CCCCCCCCcceEEEE
Q 000700 219 PLP----ISDLDSWLK------TPSIYVFDCSAAGMIVNAFIELHDWG-----------------ASNYSGSTRDCILLA 271 (1344)
Q Consensus 219 p~~----~~~l~~~~~------~p~~~v~dc~~ag~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 271 (1344)
|+. +.+.+..+- .|-++|+||..+|.+........... .........+.+++.
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~k~~ilD~C~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (248)
T PF00656_consen 96 PLDANLILDDELRDLLCKSLPKKPKLFILDCCRSGGFIDGLSSSSGESSKREERKLSSSIPPEDPNRSDVPSPSGFIVLS 175 (248)
T ss_dssp EHHHHEEHHHHTSTTTTGGGTTS-EEEEEESESSSBTBCEEEEEESSSTSS-EECHCCCCCCSSCCSEEEETTTSEEEEE
T ss_pred ecchhhhHHHHHhhhhhhhccCCccEEeeccccCCccCCccccccccccccccccccccccccccccccccCCCCcEEEE
Confidence 654 344443333 34599999999999877653321110 001123566889999
Q ss_pred ecCCcCCCCCCCCCCchhhhhcccchH
Q 000700 272 ACEAHETLPQSEEFPADVFTSCLTTPI 298 (1344)
Q Consensus 272 ac~~~e~lp~~~~lp~d~ftscl~tP~ 298 (1344)
||..+|.---.+....=+||-.|..=+
T Consensus 176 as~~~~~s~e~~~~~~g~ft~~L~~~L 202 (248)
T PF00656_consen 176 ASRPGQTSYEDSPGSGGLFTYALLEAL 202 (248)
T ss_dssp SSSTTBCEEEECTTTEEHHHHHHHHHH
T ss_pred eccccceeecccCccCHHHHHHHHHHH
Confidence 999999888777788889998886433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.19 Score=60.24 Aligned_cols=273 Identities=12% Similarity=0.084 Sum_probs=139.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCC------C--------CCCeEEEEEEeeCCCCEEEEEE
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF------P--------DKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~------~--------~~~ItsL~f~ns~d~~~L~tgs 1097 (1344)
..+....|+|+|+.+|... ++.|.+++..+++..+.-..... + -+.-..+-| +||++.|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEE
Confidence 5688999999999999987 78999999887744332211110 0 012234556 89999988875
Q ss_pred C-CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee-eeec---C
Q 000700 1098 C-NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV-NPIP---S 1172 (1344)
Q Consensus 1098 ~-DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v-~~i~---~ 1172 (1344)
. +..|+.+.+........ ....+.. +.+-..|.... .-.+.|+|+.+++ .. .... .
T Consensus 120 ~d~~~v~~~~~~~~~~~~~----------~yp~~~~----~~YPk~G~~np----~v~l~v~~~~~~~-~~~~~~~~~~~ 180 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDS----------QYPEVES----IRYPKAGDPNP----RVSLFVVDLASGK-TTELDPPNSLN 180 (353)
T ss_dssp EE-TTS-EEEEEEESSSTE----------SS-EEEE----EE--BTTS-------EEEEEEEESSSTC-CCEE---HHHH
T ss_pred ECCcCCceEEeeccCCccc----------cCCcccc----cccCCCCCcCC----ceEEEEEECCCCc-EEEeeeccccC
Confidence 4 45555555422111100 0001111 22221121110 1136778888776 32 1222 1
Q ss_pred CCCCCeeEEEEEcCCCCEEEEE--ECCC---eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEe-cCCCCCEEEEEECCC
Q 000700 1173 SSDCSISALTASQVHGGQLAAG--FVDG---SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ-PGLDPAKIVSASQAG 1246 (1344)
Q Consensus 1173 ~~~~~VtsL~~~s~dg~~L~sG--s~DG---sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~s-p~~~g~~Lasgs~DG 1246 (1344)
.....+..+ .|.+++..|+.. ..+. .+.++|..++...........+.-..-....+. ++ +..++.....||
T Consensus 181 ~~~~yl~~v-~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~-~~~~l~~s~~~G 258 (353)
T PF00930_consen 181 PQDYYLTRV-GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD-GNEFLWISERDG 258 (353)
T ss_dssp TSSEEEEEE-EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT-SSEEEEEEETTS
T ss_pred CCccCcccc-eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC-CCEEEEEEEcCC
Confidence 234447777 455566634333 2222 467778877653322221222111222245554 55 355666666788
Q ss_pred cEEEEECCCCccceEEEecCCCCeEE-EEEcCCCCE-EEEEeCC----CeEEEEeCC-CceEEEEeccCCccccccCCCe
Q 000700 1247 DIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRHAPI-IASGSAK----QLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSV 1319 (1344)
Q Consensus 1247 ~I~IWDlr~~~~~v~tl~~h~~~Vts-la~spdg~~-LasgS~D----g~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V 1319 (1344)
.-+||-+...+.....+....-.|+. +.+++++.. +.++..+ ..|..-+++ +..+..+.. .. +.-
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~~-------~~~ 330 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-ED-------GDH 330 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-TS-------STT
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-CC-------CCc
Confidence 75555544433345555555566755 677887664 4455442 245445577 778888876 33 122
Q ss_pred EEEEEecCCCEEEEEEC
Q 000700 1320 NCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1320 ~slafspdg~~Lasgs~ 1336 (1344)
..+.|+|++++++...+
T Consensus 331 ~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEE-TTSSEEEEEEE
T ss_pred eEEEECCCCCEEEEEEc
Confidence 68999999988776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.081 Score=64.80 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
..+..+.++|.|+++++++ +|...||.....+... + +.-...+| .. .+.+++-...+.|.|++.....
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-~-------G~g~~~vw--~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-F-------GSGLSFVW--SS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-E-------EE-SEEEE---T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-c-------CceeEEEE--ec-CccEEEEECCCeEEEEEcCccc
Confidence 4589999999999999966 8888888844333222 2 12235667 44 5557777778899997654311
Q ss_pred CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEE
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1191 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L 1191 (1344)
....+. +. ..+.. + |. |..|.+.+ ++.|.+||+.+++ .+..+... +|..+ .|+++|+++
T Consensus 101 ~~k~i~-----~~---~~~~~----I-f~--G~LL~~~~-~~~i~~yDw~~~~-~i~~i~v~---~vk~V-~Ws~~g~~v 159 (443)
T PF04053_consen 101 VVKSIK-----LP---FSVEK----I-FG--GNLLGVKS-SDFICFYDWETGK-LIRRIDVS---AVKYV-IWSDDGELV 159 (443)
T ss_dssp TT----------S---S-EEE----E-E---SSSEEEEE-TTEEEEE-TTT---EEEEESS----E-EEE-EE-TTSSEE
T ss_pred cceEEc-----CC---cccce----E-Ec--CcEEEEEC-CCCEEEEEhhHcc-eeeEEecC---CCcEE-EEECCCCEE
Confidence 100110 00 01111 1 11 44455544 4589999999999 89988863 27888 888999999
Q ss_pred EEEECCCeEEEEECCCC----------CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1192 AAGFVDGSVRLYDVRTP----------DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1192 ~sGs~DGsVrIwDlr~~----------~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
+..+.+ .+.+++.... +......... ...|.+..|.. +.++-.+.. .++. +-.+ ...
T Consensus 160 al~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~----d~fiYtT~~-~lkY--l~~G--e~~ 226 (443)
T PF04053_consen 160 ALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVE----DCFIYTTSN-HLKY--LVNG--ETG 226 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEET----TEEEEE-TT-EEEE--EETT--EEE
T ss_pred EEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEc----CEEEEEcCC-eEEE--EEcC--Ccc
Confidence 988766 6777765543 0011221111 25677888863 344444444 6666 3333 222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1262 tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
++..-+.++.=+.+.+....+.....|+.|..+.+
T Consensus 227 ~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 33333456666667766666666677777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.073 Score=66.34 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=143.0
Q ss_pred EEcCCCCEEEE-EECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC----CeEEEEeccCCCC
Q 000700 1038 LLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN----GNIRIWKDYDQKD 1112 (1344)
Q Consensus 1038 ~fspdg~~Lat-gs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D----G~IrIWdl~~~~~ 1112 (1344)
=++|||+.+.. .-..+.+.+.|.++.+...++.... ....+.+ ++++.++++.+.+ +++..-+..+ .
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~--spdGk~afvTsyNsE~G~tl~em~a~e--~ 270 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDT--DYDGKYAFSTCYNSEEGVTLAEMMAAE--R 270 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceE--CCCCCEEEEeccCcccCcceeeecccc--C
Confidence 35667765543 3346778888888877776665443 3345566 6788888887632 1222222211 1
Q ss_pred ceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCC-----CceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1113 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-----EQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1113 ~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~-----~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
....+-.+.. + -++.+++++..+ .++.|.+.|..+ .. .+..++.... ...+ ..+||
T Consensus 271 d~~vvfni~~-------i------ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGKs--PHGV-~vSPD 331 (635)
T PRK02888 271 DWVVVFNIAR-------I------EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPKN--PHGV-NTSPD 331 (635)
T ss_pred ceEEEEchHH-------H------HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCCC--ccce-EECCC
Confidence 1111100000 0 122345666665 367899999998 34 6667776543 5677 67899
Q ss_pred CCEEEEEE-CCCeEEEEECCCCCe-----------eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCC
Q 000700 1188 GGQLAAGF-VDGSVRLYDVRTPDM-----------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1188 g~~L~sGs-~DGsVrIwDlr~~~~-----------~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~ 1255 (1344)
|+++++++ .+++|.++|+.+.+. ++...+. ...-...+|.++ |....|-.-|..|..||+..
T Consensus 332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~--G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGR--GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCC--CCEEEeEeecceeEEEehHH
Confidence 99877655 489999999987552 1222211 123445778877 88888888999999999885
Q ss_pred C---------ccceEEEecCCCCeE-----EEEEcCCCCEEEEEe---CCC----------eEEEEeCCCceEEEEeccC
Q 000700 1256 H---------KDAYLTIDAHRGSLS-----ALAVHRHAPIIASGS---AKQ----------LIKVFSLEGEQLGTIRYHH 1308 (1344)
Q Consensus 1256 ~---------~~~v~tl~~h~~~Vt-----sla~spdg~~LasgS---~Dg----------~I~Iwd~~g~~l~~l~~~h 1308 (1344)
. ...+..+..|-.+-. +=.-.++|++|++.. .|+ .-.+.|++|+.+.-+.. +
T Consensus 406 a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d-~ 484 (635)
T PRK02888 406 AIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD-G 484 (635)
T ss_pred HHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec-C
Confidence 1 033444444432211 122367888888763 343 34567788888777765 5
Q ss_pred Ccc
Q 000700 1309 PSF 1311 (1344)
Q Consensus 1309 ~~f 1311 (1344)
..|
T Consensus 485 p~~ 487 (635)
T PRK02888 485 PTF 487 (635)
T ss_pred CCC
Confidence 444
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.02 Score=71.62 Aligned_cols=253 Identities=16% Similarity=0.196 Sum_probs=174.6
Q ss_pred hHHHhcCCCCCCCCCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHH
Q 000700 442 FEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVF 519 (1344)
Q Consensus 442 fe~~L~~g~~~~~~p~~lP~vLq~LlS~~~rlral~--ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~F 519 (1344)
++.+|+.......-|...|++.+.|..+...+|.+. .|+|.+....-++.+..+.++++.++..|.++..+....++=
T Consensus 62 L~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~ 141 (503)
T PF10508_consen 62 LKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIK 141 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555333222234567778888888877777765 567888777778888889999999999999998888888999
Q ss_pred HHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCC
Q 000700 520 IWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPND 599 (1344)
Q Consensus 520 Iwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~ 599 (1344)
++.++....+.. ..++..++...+.+.+...+.....|... ++..+...-+..-..|.+.|+++.++..|.
T Consensus 142 ~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e--l~v~i~~~S~~~~~~~~~sgll~~ll~eL~------ 212 (503)
T PF10508_consen 142 ALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYE--LLVEIASHSPEAAEAVVNSGLLDLLLKELD------ 212 (503)
T ss_pred HHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHH--HHHHHHhcCHHHHHHHHhccHHHHHHHHhc------
Confidence 999999865544 45778888777777776533223444333 466677888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCC--CHHHHHHHHHHHhh--hcccCcCCCCCCCCCCC
Q 000700 600 AQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP--QPEVRASAVFSLGT--LLDIGFDSCRDGVEGDE 675 (1344)
Q Consensus 600 ~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~--sP~VRaa~v~aL~~--~i~~~~~~~~~~~~~~~ 675 (1344)
+.+.+||.-++=+|+.|.. .+++-..-.+.++..+|..++.+. +| |-..++-.|. |.+.- .
T Consensus 213 -~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~l-----------a 277 (503)
T PF10508_consen 213 -SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNL-----------A 277 (503)
T ss_pred -CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHH-----------H
Confidence 7899999999999999999 556655668889999999998544 44 4444554444 33210 0
Q ss_pred CCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 676 ECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 676 ~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
.....+....=..+...+..+.....+..+.-++-.++.+...
T Consensus 278 ~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 278 RVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred hcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 0011122211123334555566666777776666666655433
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=56.46 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhh
Q 000700 604 PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 659 (1344)
Q Consensus 604 p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 659 (1344)
|.||..++.+||.+.+..++.-.. .-..+...|..+|+|+++.||.+++.|||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999987665544322 4455566888999999999999999999974
|
... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.33 Score=60.80 Aligned_cols=235 Identities=14% Similarity=0.192 Sum_probs=133.3
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEeeCCCCC--CCCeE-EEEEEeeCCCCEEEEEE---------CCCeEEEEeccCCC
Q 000700 1044 PIVVAADENERIKIWNYEEDTLLNSFDNHDFP--DKGIS-KLCLVNELDVSLLLVAS---------CNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1044 ~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~--~~~It-sL~f~ns~d~~~L~tgs---------~DG~IrIWdl~~~~ 1111 (1344)
..+++++.+|.|.-+|.++|+.+-.+...... ...+. +..+ .+..++.++ .+|.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v----~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI----VKKLVIIGSSGAEFFACGVRGALRAYDVET-- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE----ECCEEEEeccccccccCCCCcEEEEEECCC--
Confidence 67888888999999999999999887754410 00011 1222 234555554 357777778766
Q ss_pred CceeEEeeeecccC----------------C-CCCccccceEEEEecCCCeEEEEECCC------------------eEE
Q 000700 1112 DKQKLVTAFSSIQG----------------H-KPGVRCSNVVVDWQQQSGYLYASGEVS------------------SIM 1156 (1344)
Q Consensus 1112 ~~~~lvs~~~~l~~----------------h-~~~V~s~~~~v~ws~~~~~Llagg~Dg------------------~I~ 1156 (1344)
++..-. +..... + ...+.+ .....+.++.+++++.++ .|.
T Consensus 185 G~~~W~--~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~---~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 185 GKLLWR--FYTTEPDPNAFPTWGPDRQMWGPGGGTSWA---SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred CceeeE--eeccCCCcCCCCCCCCCcceecCCCCCccC---CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 332221 111000 0 011111 134445578888886554 799
Q ss_pred EEECCCCceeeeeecCCCCC----------CeeEEEEEcCCCC---EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCC
Q 000700 1157 LWDLEKEQQMVNPIPSSSDC----------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE 1223 (1344)
Q Consensus 1157 VWDl~~~~~~v~~i~~~~~~----------~VtsL~~~s~dg~---~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~ 1223 (1344)
-+|..+++ .+-.+...... .+..+ ...++. .+++++.+|.+..+|.++++.....- ..
T Consensus 260 Ald~~tG~-~~W~~~~~~~~~~~~~~~s~p~~~~~--~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~-~~----- 330 (488)
T cd00216 260 ALDADTGK-VKWFYQTTPHDLWDYDGPNQPSLADI--KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP-EV----- 330 (488)
T ss_pred EEcCCCCC-EEEEeeCCCCCCcccccCCCCeEEec--cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE-ee-----
Confidence 99999998 66555422110 01111 012333 68888999999999999998443321 10
Q ss_pred CeEEEEEecCCCCCEEEEE------------------ECCCcEEEEECCCCccceEEEecCC--------CCe--EEEEE
Q 000700 1224 RVVGISFQPGLDPAKIVSA------------------SQAGDIQFLDIRNHKDAYLTIDAHR--------GSL--SALAV 1275 (1344)
Q Consensus 1224 ~I~sva~sp~~~g~~Lasg------------------s~DG~I~IWDlr~~~~~v~tl~~h~--------~~V--tsla~ 1275 (1344)
...++.+|+ .++.+ ..+|.+.-.|..++ +.+-+..... ... ..+..
T Consensus 331 -~~~~~~~~~----~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~~~~~ 404 (488)
T cd00216 331 -EQPMAYDPG----LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGGSLAT 404 (488)
T ss_pred -ccccccCCc----eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCcceEe
Confidence 011222221 22221 23577888888877 4544443220 111 12222
Q ss_pred cCCCCEEEEEeCCCeEEEEe-CCCceEEEEec
Q 000700 1276 HRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1276 spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.+..+..|+.||.|+.+| .+|+.+-+.+.
T Consensus 405 --~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 405 --AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred --cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456788888999999999 67888877764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.053 Score=66.04 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=67.1
Q ss_pred EEEEECCCCc-eeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000700 1155 IMLWDLEKEQ-QMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1233 (1344)
Q Consensus 1155 I~VWDl~~~~-~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~ 1233 (1344)
-++|+..+.+ +++......-.+.|.+. ..+++...++.|+.||+|.+||...+...... ..-..+.++|||+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k------a~~~P~~iaWHp~ 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICC-ARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK------AEFIPTLIAWHPD 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEE-ecCcccceEEEEecCCeEEEEEcCCCeeeeee------ecccceEEEEcCC
Confidence 3456655443 12222222334447887 78899999999999999999998876422211 1245788999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC
Q 000700 1234 LDPAKIVSASQAGDIQFLDIRNH 1256 (1344)
Q Consensus 1234 ~~g~~Lasgs~DG~I~IWDlr~~ 1256 (1344)
|.++++|+..|.+.+||+.-.
T Consensus 311 --gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998754
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.13 Score=63.64 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
...|.--++...+++++.|++.|.+.+|+-..|+....-.... ..++++..+ +++..+++.|+..|.|.|+.+...
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~---~~~~~~~~v-s~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA---TGITCVRSV-SSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCc---cceEEEEEe-cchhHhhhhhcCCceEEeehhhcc
Confidence 3456666777889999999999999999988665443222222 345555443 678888899999999999988652
Q ss_pred C-CceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCc---eeeeeecCCCCCCeeEEEEEcC
Q 000700 1111 K-DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQ---QMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1111 ~-~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~---~~v~~i~~~~~~~VtsL~~~s~ 1186 (1344)
. .....++.. -+.|...|++ ++|++++..+++|...|+|..-.+.... ...+.+-. .+++|..+...
T Consensus 109 ~p~~~~~~t~~--d~~~~~rVTa----l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~-- 179 (726)
T KOG3621|consen 109 LPRDLDYVTPC--DKSHKCRVTA----LEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL-- 179 (726)
T ss_pred CCCcceeeccc--cccCCceEEE----EEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc--
Confidence 1 122222211 2236667777 9999999999999999999887776621 01222222 23447777443
Q ss_pred CCCEEEEEE
Q 000700 1187 HGGQLAAGF 1195 (1344)
Q Consensus 1187 dg~~L~sGs 1195 (1344)
++.+|++..
T Consensus 180 q~~LLVStl 188 (726)
T KOG3621|consen 180 QSYLLVSTL 188 (726)
T ss_pred cceehHhhh
Confidence 344555443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=58.60 Aligned_cols=220 Identities=19% Similarity=0.239 Sum_probs=128.1
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCC-----CCEEEEEEC---------C-CeEEEEeccCC---CCce
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELD-----VSLLLVASC---------N-GNIRIWKDYDQ---KDKQ 1114 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d-----~~~L~tgs~---------D-G~IrIWdl~~~---~~~~ 1114 (1344)
..|++.|..+.+.+.++.-.. ...+++++...-.+ ..++++|.. . |.|.++++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 468889988888777765433 24677776543232 578887753 2 88999999763 1133
Q ss_pred eEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeee-cCCCCCCeeEEEEEcCCCCEEEE
Q 000700 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALTASQVHGGQLAA 1193 (1344)
Q Consensus 1115 ~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i-~~~~~~~VtsL~~~s~dg~~L~s 1193 (1344)
+++. -....++|.++ ..+ ++.++++. ++.|.+|++...+ .+... ..+....++++... ++++++
T Consensus 80 ~~i~----~~~~~g~V~ai---~~~---~~~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~---~~~I~v 144 (321)
T PF03178_consen 80 KLIH----STEVKGPVTAI---CSF---NGRLVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF---KNYILV 144 (321)
T ss_dssp EEEE----EEEESS-EEEE---EEE---TTEEEEEE-TTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE---TTEEEE
T ss_pred EEEE----EEeecCcceEh---hhh---CCEEEEee-cCEEEEEEccCcc-cchhhheecceEEEEEEecc---ccEEEE
Confidence 3331 12234555552 223 56655554 4789999988766 22222 22223358888554 679999
Q ss_pred EECCCeEEEEECCCCCe-eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCC------cc-ceE-EEe
Q 000700 1194 GFVDGSVRLYDVRTPDM-LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH------KD-AYL-TID 1264 (1344)
Q Consensus 1194 Gs~DGsVrIwDlr~~~~-~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~------~~-~v~-tl~ 1264 (1344)
|.....|.++..+.... +...-+. ....+++++.+-++ ++.++.+..+|.+.++..... +. .+. ...
T Consensus 145 gD~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d--~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~ 220 (321)
T PF03178_consen 145 GDAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVD--EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS 220 (321)
T ss_dssp EESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-S--SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE
T ss_pred EEcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecC--CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEE
Confidence 99999999885554322 3322222 22467999999877 569999999999999987631 11 121 122
Q ss_pred cC-CCCeEEE---EEcC--CC------CEEEEEeCCCeEEE
Q 000700 1265 AH-RGSLSAL---AVHR--HA------PIIASGSAKQLIKV 1293 (1344)
Q Consensus 1265 ~h-~~~Vtsl---a~sp--dg------~~LasgS~Dg~I~I 1293 (1344)
.| ...|+++ .+.| .+ ..++.++.+|.|.+
T Consensus 221 f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 221 FHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 22 4467777 4444 12 24777888888873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.024 Score=64.62 Aligned_cols=237 Identities=17% Similarity=0.203 Sum_probs=159.5
Q ss_pred CCchhhHHHHhhc--hhhHHHHHHHHHHHhcCCHHHHHHHHhcC--chhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000700 456 PEQLPIVLQVLLS--QCHRFRALVLLGRFLDMGPWAVDLALSVG--IFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 531 (1344)
Q Consensus 456 p~~lP~vLq~LlS--~~~rlral~ll~~fld~~~wAv~lal~~g--ifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~ 531 (1344)
.|-+|++.-+|-| .+-+.++..-++. |....-|+.-....+ ..|-.+.|..++.+..|-.+.--+ ++++-|..-
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisn-IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL-rnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISN-IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL-RNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhh-hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH-hhhcccchh
Confidence 3778888877766 3344455444332 223334444444455 688889999888776664433333 788889999
Q ss_pred hhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000700 532 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 611 (1344)
Q Consensus 532 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~ 611 (1344)
|.+.+..|+....++.|+++.. |+.-+ ..||+--| .-+|..-..-...++..-+..+|.. ..+-|....+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~-plila-sVaCIrni-sihplNe~lI~dagfl~pLVrlL~~------~dnEeiqchAv 355 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMG-PLILA-SVACIRNI-SIHPLNEVLIADAGFLRPLVRLLRA------GDNEEIQCHAV 355 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcch-hHHHH-HHHHHhhc-ccccCcccceecccchhHHHHHHhc------CCchhhhhhHH
Confidence 9999999999999999998765 33322 22333111 1233333333466777777788873 33444554444
Q ss_pred HHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 000700 612 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR 691 (1344)
Q Consensus 612 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 691 (1344)
=.|-.|-..++..+..-++.++..++..|+.|+.-+||.++--+++.+.-. +.++....+..++.
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~---------------d~~k~~lld~gi~~ 420 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN---------------DNDKEALLDSGIIP 420 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc---------------cccHHHHhhcCCcc
Confidence 444444455666666668889999999999999999999999888888622 12233445777788
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 692 SLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 692 ~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
.|+++..|.|-+||-.++.+|.-|...
T Consensus 421 iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 421 ILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred eeecccCccchhhcccHHHHHHhhhhh
Confidence 899999999999999999888777655
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0033 Score=67.58 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHH
Q 000700 603 EPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEK 682 (1344)
Q Consensus 603 ~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~ 682 (1344)
+|.+|.-++++||-|+-.++. +-+.....++..|+|++|.||+.++..|++++... .
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------------------~ 57 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED------------------M 57 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------------------c
Confidence 489999999999999987765 22334457889999999999999999999999432 1
Q ss_pred HHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhhc
Q 000700 683 IRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGH 719 (1344)
Q Consensus 683 ~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~ 719 (1344)
+..+..+...++..+.|.++.||..+..++..+....
T Consensus 58 ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 58 IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 1222333344556679999999999999999988773
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.053 Score=62.77 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=96.9
Q ss_pred ccCCCCCccccceEEEEecCCC-eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEE
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSG-YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVR 1201 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~-~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVr 1201 (1344)
+.++..-|++ ++|+|... .+..++-+..|+|.|+++.. ++..+..+ ..+++++|.-.+.+++.+|..+|.|.
T Consensus 189 lp~~g~~Ird----lafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 189 LPGEGSFIRD----LAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred ccccchhhhh----hccCccccceeeeeccCceEEEEecccce-eeeheecc--CCceeeeeccCCcceeEEeccCceEE
Confidence 6777788888 78888765 67778899999999999998 88888776 34899877777788999999999999
Q ss_pred EEECCCCCeeeEeecCCCCCCCCeEEEEEecC----CCCCEEEEEECCCcEEEEECCCCc---cceEEEecCCCCeEEEE
Q 000700 1202 LYDVRTPDMLVCSTRPHTQQVERVVGISFQPG----LDPAKIVSASQAGDIQFLDIRNHK---DAYLTIDAHRGSLSALA 1274 (1344)
Q Consensus 1202 IwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~----~~g~~Lasgs~DG~I~IWDlr~~~---~~v~tl~~h~~~Vtsla 1274 (1344)
+||+|..+.....+... -...+|..++.-+. ..|.+++..+.+ ...|++.... .++..+. ..+...++.
T Consensus 262 vyD~R~~~~~~~e~~a~-~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismq 337 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVAN-VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQ 337 (463)
T ss_pred EEEccCCCchHhhhhhh-hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeee
Confidence 99999877544433221 11234544443222 014444444432 5567665332 1222222 244556666
Q ss_pred EcCCCC-EEEE
Q 000700 1275 VHRHAP-IIAS 1284 (1344)
Q Consensus 1275 ~spdg~-~Las 1284 (1344)
.++-.+ ++++
T Consensus 338 y~~~snh~l~t 348 (463)
T KOG1645|consen 338 YHGVSNHLLLT 348 (463)
T ss_pred ecCccceEEEE
Confidence 666444 3444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.088 Score=65.68 Aligned_cols=89 Identities=6% Similarity=-0.046 Sum_probs=60.0
Q ss_pred CcEEEEECCC----CccceEEEecCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCce-------------EEEEecc
Q 000700 1246 GDIQFLDIRN----HKDAYLTIDAHRGSLSALAVHRHAPIIASG-SAKQLIKVFSLEGEQ-------------LGTIRYH 1307 (1344)
Q Consensus 1246 G~I~IWDlr~----~~~~v~tl~~h~~~Vtsla~spdg~~Lasg-S~Dg~I~Iwd~~g~~-------------l~~l~~~ 1307 (1344)
+.|.+.|.++ +...+..+. -......++++|||++++++ ..+.+|.|+|+.... ..++..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4577778776 223444444 34456889999999977655 458899999965321 222211
Q ss_pred CCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1308 HPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1308 h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
...-...+|.++|....|-.-|..|..|+
T Consensus 374 --------GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 374 --------GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred --------CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 12345688999998888888899999996
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.59 Score=57.13 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEECCCCcEEEEe-eCCCCCCCCeEEEEEEeeCCCCEEEEEECCC-------
Q 000700 1034 TKTALLQPFSPIVVAA-DENE----RIKIWNYEEDTLLNSF-DNHDFPDKGISKLCLVNELDVSLLLVASCNG------- 1100 (1344)
Q Consensus 1034 I~~l~fspdg~~Latg-s~dg----~I~VWd~~tg~~l~~~-~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG------- 1100 (1344)
+....++|+|+++|.+ +..| .++|+|+++|+.+... .... ...+.| .+++..|+-...+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-----~~~~~W--~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-----FSSVSW--SDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-----SEEEEE--CTTSSEEEEEECSTTTSS-CC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-----cceEEE--eCCCCEEEEEEeCcccccccC
Confidence 4467899999988865 3334 4999999999776532 2221 233788 67766665554322
Q ss_pred ----eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE---CC-CeEEEEECCCC---ceeeee
Q 000700 1101 ----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EV-SSIMLWDLEKE---QQMVNP 1169 (1344)
Q Consensus 1101 ----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg---~D-g~I~VWDl~~~---~~~v~~ 1169 (1344)
.|..|++.+....-.++ +.+...... .+.+..+.++.++++.. .+ ..+.+.|...+ ......
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lv-----fe~~~~~~~--~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELV-----FEEPDEPFW--FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEE-----EC-TTCTTS--EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred CCCcEEEEEECCCChHhCeeE-----EeecCCCcE--EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence 36777776533333344 444443331 12377888999988763 33 45888888875 112334
Q ss_pred ecCCCCCCeeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCe--eeEeecCCCCCCC--CeEEEEEecCCCCCEEEEE
Q 000700 1170 IPSSSDCSISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDM--LVCSTRPHTQQVE--RVVGISFQPGLDPAKIVSA 1242 (1344)
Q Consensus 1170 i~~~~~~~VtsL~~~s~dg~~L~sGs---~DGsVrIwDlr~~~~--~v~~~~~~~~h~~--~I~sva~sp~~~g~~Lasg 1242 (1344)
+..+.......+ ... ++.+++... .++.|...++..... ....+- .|.. .+..+.... +.+++..
T Consensus 272 l~~~~~~~~~~v-~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~---~~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYV-DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFK---DYLVLSY 343 (414)
T ss_dssp EEESSSS-EEEE-EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEET---TEEEEEE
T ss_pred EeCCCCceEEEE-Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEEC---CEEEEEE
Confidence 433333323334 222 333443332 246777778876652 111221 2223 355555432 3445555
Q ss_pred ECCCc--EEEEECCCCccceEEEec-CCCCeEEEEEcCCCCEE-E-EEeC--CCeEEEEeCCCceEEEEe
Q 000700 1243 SQAGD--IQFLDIRNHKDAYLTIDA-HRGSLSALAVHRHAPII-A-SGSA--KQLIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1243 s~DG~--I~IWDlr~~~~~v~tl~~-h~~~Vtsla~spdg~~L-a-sgS~--Dg~I~Iwd~~g~~l~~l~ 1305 (1344)
..++. |+++|+..+ .....+.. ..+.|..+...+++..+ + ..|. -+++..||+....+..++
T Consensus 344 ~~~~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EETTEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EECCccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 55554 888998832 23333332 34456666655655532 2 2232 246777776655555443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.005 Score=75.47 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=83.2
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEE
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTI 1304 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l 1304 (1344)
|.--+++.. +++++.|+.-|.+++|+-..+........+..+.+....+|++..++|.|+..|.|.|+.+........
T Consensus 36 v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 333344444 889999999999999998766333334444566777888999999999999999999998543222222
Q ss_pred eccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEE
Q 000700 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1305 ~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
.+ -..+-..|...|++++|+++++.|.+|...|.|..
T Consensus 114 ~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 114 DY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ee-eccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 11 11112236689999999999999999999998864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.036 Score=68.81 Aligned_cols=105 Identities=10% Similarity=0.215 Sum_probs=80.8
Q ss_pred EEEecCCCeEEEEE----CCCeEEEEECCCCceeee--eecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe
Q 000700 1137 VDWQQQSGYLYASG----EVSSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM 1210 (1344)
Q Consensus 1137 v~ws~~~~~Llagg----~Dg~I~VWDl~~~~~~v~--~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~ 1210 (1344)
..|+|....+++++ ..|.|.||- +++. +.. +.+.| ++++ +|+|..-.++.|-.-|.+.+|...+.+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGE-Pqr~Vt~P~h----atSL-CWHpe~~vLa~gwe~g~~~v~~~~~~e- 92 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGE-PQRDVTYPVH----ATSL-CWHPEEFVLAQGWEMGVSDVQKTNTTE- 92 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCC-CCccccccee----hhhh-ccChHHHHHhhccccceeEEEecCCce-
Confidence 68999999999885 468888884 3333 222 33333 5778 677888889999999999999987766
Q ss_pred eeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000700 1211 LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1254 (1344)
Q Consensus 1211 ~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr 1254 (1344)
.... ...|..+|..+.|+++ |..++++..-|.|.+|...
T Consensus 93 ~htv---~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTV---VETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeee---ccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEee
Confidence 2222 2256799999999999 9999999999999999866
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.58 Score=52.96 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=111.5
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1032 KGTKTALLQPFSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1032 ~~I~~l~fspdg~-~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
..++.++|+|+.+ ++++.+..+.|..++.+ |+.++++.-.. .+..-+|++. .++.++++.-.++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g--~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG--FGDYEGITYL--GNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS---SSEEEEEE---STTEEEEEETTTTEEEEEEE---
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC--CCCceeEEEE--CCCEEEEEEcCCCcEEEEEEecc
Confidence 4599999999866 55666777888778864 88888876543 1467889984 46666666656899999988442
Q ss_pred CCceeE--Eeeee--cccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCC---Cceeeee-----ec--CCCCC
Q 000700 1111 KDKQKL--VTAFS--SIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK---EQQMVNP-----IP--SSSDC 1176 (1344)
Q Consensus 1111 ~~~~~l--vs~~~--~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~---~~~~v~~-----i~--~~~~~ 1176 (1344)
...... +..+. ....+.....+ ++|++.++.|+++-...-..+|.+.. .. .+.. +. ...-.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EG----la~D~~~~~L~v~kE~~P~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEG----LAYDPKTNRLFVAKERKPKRLYEVNGFPGGF-DLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EE----EEEETTTTEEEEEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEE----EEEcCCCCEEEEEeCCCChhhEEEccccCcc-ceeeccccccccccceec
Confidence 222111 11111 11123445566 89999999999987665566665543 11 1111 11 11112
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCC------CCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ------VERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h------~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
.+.++++.+..+++++....+..|..+| +.++ .+..+.-..+. -..--.|++.++ |++.+++ .-+..++
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~--G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD--GNLYIVS-EPNLFYR 246 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEE-TTTEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCC-EEEEEEeCCcccCcccccCCccEEEECCC--CCEEEEc-CCceEEE
Confidence 3778877777788888888899999999 4444 33333222111 134678999988 7655554 4444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.31 Score=56.78 Aligned_cols=251 Identities=13% Similarity=0.163 Sum_probs=137.0
Q ss_pred EEEEEcCCCCEEEEEE----------CCCcEEEEECCCCcEEEEeeCCCCC----CCCeEEEEEEeeCCCCEEEEEEC--
Q 000700 1035 KTALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVASC-- 1098 (1344)
Q Consensus 1035 ~~l~fspdg~~Latgs----------~dg~I~VWd~~tg~~l~~~~~h~~~----~~~ItsL~f~ns~d~~~L~tgs~-- 1098 (1344)
-.+..+|+++.+.+++ ....|.+||.++-.....+.-...+ ......+.+ +.|++++++...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~l--s~dgk~~~V~N~TP 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFAL--SADGKFLYVQNFTP 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE---TTSSEEEEEEESS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEE--ccCCcEEEEEccCC
Confidence 3467899999888753 4668999999998777765543310 001122334 456666666533
Q ss_pred CCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCC-Cceeeee---ecCCC
Q 000700 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEK-EQQMVNP---IPSSS 1174 (1344)
Q Consensus 1099 DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~-~~~~v~~---i~~~~ 1174 (1344)
.-.|.|-|+.. + +.+. .|...++...|-..+..+.+-|.||.+.-..+.. ++ .... +....
T Consensus 117 a~SVtVVDl~~--~--kvv~----------ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk-~~~~~t~~F~~~ 181 (342)
T PF06433_consen 117 ATSVTVVDLAA--K--KVVG----------EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGK-EAQKSTKVFDPD 181 (342)
T ss_dssp SEEEEEEETTT--T--EEEE----------EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSS-EEEEEEEESSTT
T ss_pred CCeEEEEECCC--C--ceee----------eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCC-EeEeeccccCCC
Confidence 34566666644 1 1111 1111122233333345677788999988888773 33 2211 11111
Q ss_pred CCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCe-eeEeecCCCC-------CCCCeEEEEEecCCCCCEEEEEEC--
Q 000700 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDM-LVCSTRPHTQ-------QVERVVGISFQPGLDPAKIVSASQ-- 1244 (1344)
Q Consensus 1175 ~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~-~v~~~~~~~~-------h~~~I~sva~sp~~~g~~Lasgs~-- 1244 (1344)
..++..-......+..++--+.+|.|+-.|+..... ....+..... ..+.-.-+++++. .+.|++--.
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~--~~rlyvLMh~g 259 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA--SGRLYVLMHQG 259 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT--TTEEEEEEEE-
T ss_pred CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc--cCeEEEEecCC
Confidence 111221112233455666678899999998876652 2222221110 0122334677776 444433221
Q ss_pred -CC-------cEEEEECCCCccceEEEecCCCCeEEEEEcCCCC-EEEEE-eCCCeEEEEe-CCCceEEEEec
Q 000700 1245 -AG-------DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASG-SAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1245 -DG-------~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~-~Lasg-S~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
+| .|.++|+.+. +.+..+.. ..++.+|.++.+.+ +|.+. ..++.+.||| .+|+.+.++..
T Consensus 260 ~~gsHKdpgteVWv~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTH-KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTT-EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCccCCceEEEEEECCCC-eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 11 3888899887 77777763 23577999998765 66554 4579999999 78998888875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.4 Score=52.34 Aligned_cols=280 Identities=11% Similarity=0.040 Sum_probs=119.4
Q ss_pred EEcCCCCEEEEEE-CCCc--EEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCce
Q 000700 1038 LLQPFSPIVVAAD-ENER--IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1038 ~fspdg~~Latgs-~dg~--I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1114 (1344)
+|.++|+.|+.++ .+|. +.+.|+++++..+.-.+.. .......+ +++++.++-...+..++-.|+.+ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~T--~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFL--SPDDRALYYVKNGRSLRRVDLDT--LEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE---TTSSEEEEEETTTEEEEEETTT----E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---CCccceEE--ecCCCeEEEEECCCeEEEEECCc--CcE
Confidence 4678897666554 4554 5555888887665444322 11112233 45666665444556777777766 333
Q ss_pred eEEeeeecccCCCCCccccceEEEEe-cCCCeEEEEEC----C-------------------CeEEEEECCCCceeeeee
Q 000700 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGE----V-------------------SSIMLWDLEKEQQMVNPI 1170 (1344)
Q Consensus 1115 ~lvs~~~~l~~h~~~V~s~~~~v~ws-~~~~~Llagg~----D-------------------g~I~VWDl~~~~~~v~~i 1170 (1344)
+.+ +......+-. ..|. ..++..+++.. | ..|.-.|+.+++ ....+
T Consensus 115 ~~v-----y~~p~~~~g~----gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~ 184 (386)
T PF14583_consen 115 RVV-----YEVPDDWKGY----GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVF 184 (386)
T ss_dssp EEE-----EE--TTEEEE----EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEE
T ss_pred EEE-----EECCcccccc----cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEE
Confidence 333 1111221111 2332 22333343321 1 234455666666 32222
Q ss_pred cCCCCCCeeEEEEEcCCCCEEEEEEC---CC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEE-EE--
Q 000700 1171 PSSSDCSISALTASQVHGGQLAAGFV---DG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-AS-- 1243 (1344)
Q Consensus 1171 ~~~~~~~VtsL~~~s~dg~~L~sGs~---DG-sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Las-gs-- 1243 (1344)
. ... .+..+.+.+.+..+|+-|-+ +. .-|+|=+++.....+.++... ....+.-=-|.|+ |..|.- +.
T Consensus 185 ~-~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~D--G~~i~y~~~~~ 259 (386)
T PF14583_consen 185 E-DTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPD--GSTIWYDSYTP 259 (386)
T ss_dssp E-ESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TT--SS-EEEEEEET
T ss_pred e-cCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCC--CCEEEEEeecC
Confidence 2 222 36777555556666666543 22 136676654433333332221 1244555567888 555443 22
Q ss_pred --CCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCC----------------eEEEEeCCCceEEEEe
Q 000700 1244 --QAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ----------------LIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1244 --~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg----------------~I~Iwd~~g~~l~~l~ 1305 (1344)
.+..|.-+|+.++. ...... .....-+..+++|.+++-=+.|. -|.+++........+.
T Consensus 260 ~~~~~~i~~~d~~t~~-~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGE-RRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp TT--EEEEEE-TTT---EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCceEEEeeCCCCCC-ceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 23346777887762 222121 12344566678888887544432 4566776665555555
Q ss_pred ccCCc-c--ccc-cCCCeEEEEEecCCCEEEEE-ECCCeEEEc
Q 000700 1306 YHHPS-F--MAQ-KIGSVNCLTFHPYQVLLAAG-SADACVSIH 1343 (1344)
Q Consensus 1306 ~~h~~-f--~~~-~~~~V~slafspdg~~Lasg-s~Dg~I~IW 1343 (1344)
. |.. + +.+ +.-.=....|+|||++++-. ...|...||
T Consensus 337 ~-h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 337 R-HDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred e-ccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 5 431 1 111 11112568999999875554 447877776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.12 Score=60.87 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=110.3
Q ss_pred CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC------CCEEEEEEC----------CCeEEEEECCCC----Ceee
Q 000700 1153 SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH------GGQLAAGFV----------DGSVRLYDVRTP----DMLV 1212 (1344)
Q Consensus 1153 g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d------g~~L~sGs~----------DGsVrIwDlr~~----~~~v 1212 (1344)
+.|++.|..+.. .+..+.-.....++++..+.-. ..+|++|+. .|.|.+|++... ..+.
T Consensus 2 s~i~l~d~~~~~-~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFE-VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSS-EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCe-EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 358888988887 7776665555557777554422 467777764 289999999984 1122
Q ss_pred EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC--CCCeEEEEEcCCCCEEEEEeCCCe
Q 000700 1213 CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGSAKQL 1290 (1344)
Q Consensus 1213 ~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h--~~~Vtsla~spdg~~LasgS~Dg~ 1290 (1344)
... .. ...++|++++--. +. |++|. ++.|.+|++... +.+.....+ ...++++... +.+++.|...+.
T Consensus 81 ~i~-~~-~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~~-~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s 150 (321)
T PF03178_consen 81 LIH-ST-EVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDNS-KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS 150 (321)
T ss_dssp EEE-EE-EESS-EEEEEEET---TE-EEEEE-TTEEEEEEEETT-SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred EEE-EE-eecCcceEhhhhC---CE-EEEee-cCEEEEEEccCc-ccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence 111 11 2357899888763 44 44443 589999999977 323222222 3356666655 569999998888
Q ss_pred EEEEe--CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1291 IKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1291 I~Iwd--~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
+.++. ..+..+..+.. .. ....++++.|-+++..++++..+|.|.++
T Consensus 151 v~~~~~~~~~~~l~~va~-d~-----~~~~v~~~~~l~d~~~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVAR-DY-----QPRWVTAAEFLVDEDTIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEEEEETTTE-EEEEEE-ES-----S-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred EEEEEEEccCCEEEEEEe-cC-----CCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence 88775 44555555443 11 12568889998666789999999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.16 Score=65.68 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=91.3
Q ss_pred ECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEe---eCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCC
Q 000700 1050 DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVN---ELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1126 (1344)
Q Consensus 1050 s~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~n---s~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h 1126 (1344)
.....|+-.|++.|+.+..+..+.. ..|..++=.. .-+..-.++|-.+..+..||.+... .+++.. ..+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~--~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~----~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDD--IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDS----QSK 572 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCC--cceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceeec----ccc
Confidence 4567888889999999999998871 2255543210 0123456677778889999997633 223311 111
Q ss_pred CCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000700 1127 KPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1205 (1344)
Q Consensus 1127 ~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDl 1205 (1344)
.. .+...+.+.-...+|+|++|+.+|.||+||--... ....+++ -+.+|.+| ..+.+|+++++.| +..+.++|.
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-AKT~lp~-lG~pI~~i-Dvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-AKTALPG-LGDPIIGI-DVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cc-ccCCCceEEEecCCceEEEEeCCCcEEeecccchh-hhhcCCC-CCCCeeEE-EecCCCcEEEEee-cceEEEEEE
Confidence 11 11111222334478999999999999999954333 3444554 34569999 6788999988876 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.043 Score=71.32 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=109.0
Q ss_pred CchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000700 540 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 619 (1344)
Q Consensus 540 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~ 619 (1344)
.+.++-.+|++++- -.|--+...||.+.++-.. +....-++++.+.+..|+ ||.|.||.++|.|+||+=.
T Consensus 349 ~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~-~m~~~l~~Il~~Vl~~l~-------DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEW--KERHAALLALSVIAEGCSD-VMIGNLPKILPIVLNGLN-------DPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhhh
Confidence 35677788887775 5566566677888776555 444456788889999999 9999999999999999998
Q ss_pred cchHHHHhhhccCchhhHhhhccCC-CHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHH-HHHHH-HHHhh
Q 000700 620 DFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAE-ISIIR-SLLTV 696 (1344)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~-~ll~~ 696 (1344)
++...-.....+.+...|+..+.|. .|.|-+.++.||=.|... +.... +.-= ..+.. .+..+
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--------------~~~~~-l~pYLd~lm~~~l~~L 483 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--------------CDKSI-LEPYLDGLMEKKLLLL 483 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--------------CcHHH-HHHHHHHHHHHHHHHH
Confidence 8765444334455555566666655 789999999888888722 21111 1100 11122 44556
Q ss_pred ccCCChhhHHHHHHHHHHHHhhccchH
Q 000700 697 VSDGSPLVRAEVAVALARFAFGHKQHL 723 (1344)
Q Consensus 697 ~~D~sp~VR~e~~~~ls~~~~~~~~~f 723 (1344)
...++|.|++.++-+++-+...=+..|
T Consensus 484 ~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 484 LQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 778999999999999877665433333
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.28 E-value=4.2 Score=51.47 Aligned_cols=198 Identities=11% Similarity=0.059 Sum_probs=112.8
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCC-CCe-------EEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCce
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD-KGI-------SKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~-~~I-------tsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~ 1114 (1344)
+..|.+++.++.|.-.|.++|+.+-++....+.. ... ..+++ .+..++.++.|+.+.-.|..+ ++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~T--Gk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKT--GKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCC--CCE
Confidence 5577777778999999999999888776432110 000 11223 245677888899998888866 443
Q ss_pred eEEeeeecccCCC--CCccccceEEEEecCCCeEEEEEC------CCeEEEEECCCCceeeeeecCC-------------
Q 000700 1115 KLVTAFSSIQGHK--PGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSS------------- 1173 (1344)
Q Consensus 1115 ~lvs~~~~l~~h~--~~V~s~~~~v~ws~~~~~Llagg~------Dg~I~VWDl~~~~~~v~~i~~~------------- 1173 (1344)
.-.. ....+. ..+.+..++ .++.++++.. +|.|..+|.++++ .+-.+..-
T Consensus 143 ~W~~---~~~~~~~~~~~tssP~v-----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 143 VWSK---KNGDYKAGYTITAAPLV-----VKGKVITGISGGEFGVRGYVTAYDAKTGK-LVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred Eeec---ccccccccccccCCcEE-----ECCEEEEeecccccCCCcEEEEEECCCCc-eeEeccCcCCCcccccccccc
Confidence 2211 111111 112221111 1456676642 6889999999988 55433221
Q ss_pred -----------------CCCCeeEEEEEcCCCCEEEEEECC-----C-----------eEEEEECCCCCeeeEeecCCCC
Q 000700 1174 -----------------SDCSISALTASQVHGGQLAAGFVD-----G-----------SVRLYDVRTPDMLVCSTRPHTQ 1220 (1344)
Q Consensus 1174 -----------------~~~~VtsL~~~s~dg~~L~sGs~D-----G-----------sVrIwDlr~~~~~v~~~~~~~~ 1220 (1344)
....+...-..++..+++..+..+ + +|.-.|+++++ ..-.++. ..
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~-~~W~~Q~-~~ 291 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK-IKWHYQT-TP 291 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC-EEEeeeC-CC
Confidence 111233222445566677766633 2 56677888887 3333322 12
Q ss_pred CCCC-------eEEEEEecCCCCC---EEEEEECCCcEEEEECCCCccce
Q 000700 1221 QVER-------VVGISFQPGLDPA---KIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1221 h~~~-------I~sva~sp~~~g~---~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
|..+ ..-+.+..+ |+ .++.++.+|.+.+.|-+++ +++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~--G~~~~~v~~~~K~G~~~vlDr~tG-~~i 338 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKD--GKPRKLLAHADRNGFFYVLDRTNG-KLL 338 (527)
T ss_pred CCCccccCCCCcEEEEeccC--CcEEEEEEEeCCCceEEEEECCCC-cee
Confidence 2221 122233234 54 7889999999999999987 554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.14 Score=64.09 Aligned_cols=210 Identities=16% Similarity=0.142 Sum_probs=154.9
Q ss_pred HhHhhhHHHhcCCCCCCCCCCchhhHHHHhhchhhH--HHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhh
Q 000700 437 EQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELR 514 (1344)
Q Consensus 437 ~~Ltafe~~L~~g~~~~~~p~~lP~vLq~LlS~~~r--lral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr 514 (1344)
+.|+.++..+..-+.....|. |+++..|.+...+ .-++.+|.+.++...+... ..++.+++.+.|+++.+..|
T Consensus 20 ~~L~~l~~~~~~~~~l~~~~~--~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 20 EALPELKTELSSSPFLERLPE--PVLFDCLNTSNREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred HHHHHHHHHHhhhhHHHhchH--HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHH
Confidence 567777766654442222222 3355556654211 1233457777766555543 46888999999999999999
Q ss_pred hHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcC
Q 000700 515 QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQG 594 (1344)
Q Consensus 515 ~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~ 594 (1344)
..++-.+.++..........+...+.+...+..|.+++. +....++=+|..+.. ++.+-..-+..++...+..++.
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~- 170 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMS- 170 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHh-
Confidence 998888888887655445556677888899999988775 778888889999986 4555555667888888888887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcc
Q 000700 595 SMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 595 ~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
.++..+|-=+.=++.++....++.-..+.+.++...++..|++....||..++=.|+.+..
T Consensus 171 ------~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 171 ------QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred ------ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 5455666656667888888888888888999999999999999999999999999999984
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=54.66 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=63.1
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch
Q 000700 543 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 622 (1344)
Q Consensus 543 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~ 622 (1344)
.+++.|.. +..+..|..++.+|+.+. ..++...+..+++ |++|.||.+++.+||++=.
T Consensus 3 ~L~~~l~~-~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~vr~~a~~aL~~i~~--- 60 (88)
T PF13646_consen 3 ALLQLLQN-DPDPQVRAEAARALGELG-----------DPEAIPALIELLK-------DEDPMVRRAAARALGRIGD--- 60 (88)
T ss_dssp HHHHHHHT-SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHT-------SSSHHHHHHHHHHHHCCHH---
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCC---
Confidence 45666733 223689999999998442 3467888999998 8999999999999998821
Q ss_pred HHHHhhhccCchhhHhhhc-cCCCHHHHHHHHHHHh
Q 000700 623 EAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 657 (1344)
Q Consensus 623 ~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 657 (1344)
..+...|..++ +|.+..||.+++.+||
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12334677766 4567889999999987
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.085 Score=66.53 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=101.8
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000700 497 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 576 (1344)
Q Consensus 497 gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 576 (1344)
-+|+.+++++++...+.|.+.-..|..+...++.-- .+ ..+.+.+-|.+++ +..|.++.=+|+.+. .
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~--~l---~~n~l~kdl~~~n--~~~~~lAL~~l~~i~--~---- 108 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL--IL---IINSLQKDLNSPN--PYIRGLALRTLSNIR--T---- 108 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH--HH---HHHHHHHHHCSSS--HHHHHHHHHHHHHH---S----
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH--HH---HHHHHHHhhcCCC--HHHHHHHHhhhhhhc--c----
Confidence 678999999999999999886666777777666511 11 1233444455444 578888888888886 1
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHH
Q 000700 577 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 656 (1344)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 656 (1344)
.-+-..+...+...|. +++|.||.-+++|+.++....++. ++..+...+..+|.|.+|.|+.+++.++
T Consensus 109 -~~~~~~l~~~v~~ll~-------~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 109 -PEMAEPLIPDVIKLLS-------DPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp -HHHHHHHHHHHHHHHH-------SSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred -cchhhHHHHHHHHHhc-------CCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 1133556777788888 899999999999999999876552 1122567889999999999999999999
Q ss_pred hhh
Q 000700 657 GTL 659 (1344)
Q Consensus 657 ~~~ 659 (1344)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.15 E-value=3.5 Score=47.23 Aligned_cols=238 Identities=15% Similarity=0.195 Sum_probs=125.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeE---E
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKL---V 1117 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~l---v 1117 (1344)
..++.|+.|.++| +.+++.........+.... .|..+... ++-+.|++-+ ||.+.++++..-...... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl--~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVL--PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEe--cccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 4578999999888 9999984333333333222 48899885 4555555554 499999998652221100 0
Q ss_pred eeee-cccCCCCCccccceEEE--EecCCCeEEEEECCCeEEEEECCCC-----ceeeeeecCCCCCCeeEEEEEcCCCC
Q 000700 1118 TAFS-SIQGHKPGVRCSNVVVD--WQQQSGYLYASGEVSSIMLWDLEKE-----QQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1118 s~~~-~l~~h~~~V~s~~~~v~--ws~~~~~Llagg~Dg~I~VWDl~~~-----~~~v~~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
..-. .............+ .+ -...+...++....+.|.+|..... . ..+.+... ..+.++.+. ++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~-f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~-~~ke~~lp--~~~~~i~~~---~~ 149 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSF-FAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK-LLKEISLP--DPPSSIAFL---GN 149 (275)
T ss_pred ccccccccccccccCCeeE-EeeccccccceEEEEEECCEEEEEEEECCcccccc-eeEEEEcC--CCcEEEEEe---CC
Confidence 0000 00001111111101 11 1123445555555568888877653 3 44555554 337888665 67
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCC---------CCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ---------QVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~---------h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v 1260 (1344)
.++.|..++ ..+.|+.++. .......... ...++..+.+ ++ +.+|++- |..-.+.|... ++.
T Consensus 150 ~i~v~~~~~-f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~e~Ll~~--~~~g~fv~~~G--~~~ 220 (275)
T PF00780_consen 150 KICVGTSKG-FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SD--NEFLLCY--DNIGVFVNKNG--EPS 220 (275)
T ss_pred EEEEEeCCc-eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe-CC--ceEEEEe--cceEEEEcCCC--CcC
Confidence 888887665 7788998665 2222211110 1122333333 23 4555543 33444455542 222
Q ss_pred E--EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCceEEEEec
Q 000700 1261 L--TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1261 ~--tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
+ .+.= .....+++++ .+++++.+. +.|.||+ .+|+.++++..
T Consensus 221 r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 221 RKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2 2221 2345566663 467777655 5599999 56788887776
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.019 Score=61.73 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000700 555 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 634 (1344)
Q Consensus 555 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 634 (1344)
|..|.-+..+++-+|..|+. +=+.....+...|+ |++|.||.-++.+|++|... +- +-++..+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~-------D~~~~VR~~al~~Ls~Li~~-d~---ik~k~~l~ 65 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLR-------DEDPLVRKTALLVLSHLILE-DM---IKVKGQLF 65 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHc-Cc---eeehhhhh
Confidence 57899999999999988886 44556778888899 89999999999999999854 11 22445554
Q ss_pred hhHhhhccCCCHHHHHHHHHHHhhhccc
Q 000700 635 AIYVPLLSEPQPEVRASAVFSLGTLLDI 662 (1344)
Q Consensus 635 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 662 (1344)
..++.++.|++|+||+.+.++|..+...
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999854
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.057 Score=69.93 Aligned_cols=140 Identities=12% Similarity=0.155 Sum_probs=94.8
Q ss_pred CchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000700 540 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 619 (1344)
Q Consensus 540 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~ 619 (1344)
+|...++.++..+ .++|.|+-+-|...-+..++- ---+.+.+.+=++ +++|.+|..++=.|+.+-.
T Consensus 69 LF~dVvk~~~S~d--~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~-------d~Np~IRaLALRtLs~Ir~ 134 (746)
T PTZ00429 69 LFVDVVKLAPSTD--LELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTT-------NSSPVVRALAVRTMMCIRV 134 (746)
T ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcC-------CCCHHHHHHHHHHHHcCCc
Confidence 4555666666655 499999998887775444331 1122344444455 8899999999999887654
Q ss_pred cchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccC
Q 000700 620 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 699 (1344)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 699 (1344)
. + +-+.+...+-.++.|++|-||+.+++++.++.....+.. .+..+...|..++.|
T Consensus 135 ~--~-----i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-----------------~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 135 S--S-----VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-----------------YQQDFKKDLVELLND 190 (746)
T ss_pred H--H-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----------------cccchHHHHHHHhcC
Confidence 2 1 222334456788899999999999999999974322111 122233445566789
Q ss_pred CChhhHHHHHHHHHHHHh
Q 000700 700 GSPLVRAEVAVALARFAF 717 (1344)
Q Consensus 700 ~sp~VR~e~~~~ls~~~~ 717 (1344)
.+|+|...++.+|..+..
T Consensus 191 ~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 191 NNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 999999999998877753
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.99 E-value=6.3 Score=51.22 Aligned_cols=280 Identities=16% Similarity=0.164 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCc-------EEEEeeCCCCCCCCeEEEEEEeeC--CCCEEEEEE---CCCe
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDT-------LLNSFDNHDFPDKGISKLCLVNEL--DVSLLLVAS---CNGN 1101 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~-------~l~~~~~h~~~~~~ItsL~f~ns~--d~~~L~tgs---~DG~ 1101 (1344)
..|+..-++ .+|.+|+.-|.=.+-.+.+.. .+.++.+- ++|.+++..+.. .+..++|++ .||.
T Consensus 309 assi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NL----gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgS 383 (1096)
T KOG1897|consen 309 ASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNL----GPIVDMCVVDLDRQGQGQIVTCSGAFKDGS 383 (1096)
T ss_pred hhhhhcccC-ceEEEeccCCceeeEEccccCCCCchhhhhhhcccc----cceeeEEEEeccccCCceEEEEeCCCCCCc
Confidence 344444444 478888877776666654322 22334433 489999987544 455666664 4899
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEE
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1181 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL 1181 (1344)
+||.+..- +..++. ...+.| ...++.+...+.=+. +.+++.+-- +.-++..+..+- ......+-... ...+
T Consensus 384 LRiiRngi--~I~e~A--~i~l~G-ikg~w~lk~~v~~~~-d~ylvlsf~-~eTrvl~i~~e~-ee~~~~gf~~~-~~Ti 454 (1096)
T KOG1897|consen 384 LRIIRNGI--GIDELA--SIDLPG-IKGMWSLKSMVDENY-DNYLVLSFI-SETRVLNISEEV-EETEDPGFSTD-EQTI 454 (1096)
T ss_pred EEEEeccc--ccceee--EeecCC-ccceeEeeccccccC-CcEEEEEec-cceEEEEEccce-EEecccccccc-CceE
Confidence 99998744 222221 112333 222222110111122 235555533 234444444332 22222222222 3334
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceE
Q 000700 1182 TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~ 1261 (1344)
.+..-.++.++-... ..||++|-.. ....|+.. +.++....+.+ ...++.++.++.+...++...+ +.
T Consensus 455 f~S~i~g~~lvQvTs-~~iRl~ss~~---~~~~W~~p----~~~ti~~~~~n--~sqVvvA~~~~~l~y~~i~~~~--l~ 522 (1096)
T KOG1897|consen 455 FCSTINGNQLVQVTS-NSIRLVSSAG---LRSEWRPP----GKITIGVVSAN--ASQVVVAGGGLALFYLEIEDGG--LR 522 (1096)
T ss_pred EEEccCCceEEEEec-ccEEEEcchh---hhhcccCC----CceEEEEEeec--ceEEEEecCccEEEEEEeeccc--ee
Confidence 233344555554443 4688887651 23344333 44555555555 5677888878888888888763 22
Q ss_pred EEe--cCCCCeEEEEEcCCC------CEEEEEeCCCeEEEEe--CCCceEEEEeccCCccccccCCCeEEEEEecCCCEE
Q 000700 1262 TID--AHRGSLSALAVHRHA------PIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1331 (1344)
Q Consensus 1262 tl~--~h~~~Vtsla~spdg------~~LasgS~Dg~I~Iwd--~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~L 1331 (1344)
... .....|.|++++|-| ++++.|.++..+.+.- -+...+..... ... .-...|--..|--|+.+|
T Consensus 523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-~~~---~iPRSIl~~~~e~d~~yL 598 (1096)
T KOG1897|consen 523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-SGE---IIPRSILLTTFEGDIHYL 598 (1096)
T ss_pred eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-CCC---ccchheeeEEeeccceEE
Confidence 222 235689999999742 3788888777665544 23333222211 000 011345556666678899
Q ss_pred EEEECCCeEEEc
Q 000700 1332 AAGSADACVSIH 1343 (1344)
Q Consensus 1332 asgs~Dg~I~IW 1343 (1344)
.++..||.+.-|
T Consensus 599 lvalgdG~l~~f 610 (1096)
T KOG1897|consen 599 LVALGDGALLYF 610 (1096)
T ss_pred EEEcCCceEEEE
Confidence 999999987644
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.62 Score=56.93 Aligned_cols=194 Identities=14% Similarity=0.142 Sum_probs=94.1
Q ss_pred EEEecCCCeEEEEECC----------C-eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000700 1137 VDWQQQSGYLYASGEV----------S-SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDV 1205 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~D----------g-~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDl 1205 (1344)
++..+.||-+++..++ . .|+||+..... +..+.-..+ .|.++ .|.. ...|++-..||.+++||.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l--l~~i~w~~~-~iv~~-~wt~-~e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL--LSSIPWDSG-RIVGM-GWTD-DEELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE--eEEEEECCC-CEEEE-EECC-CCeEEEEEcCCEEEEEeC
Confidence 3444556666655433 1 58899876554 566554443 59999 4544 456777789999999998
Q ss_pred CCCCeeeEe---ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce--EEEecCCCCeEEEEEcCCCC
Q 000700 1206 RTPDMLVCS---TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1206 r~~~~~v~~---~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v--~tl~~h~~~Vtsla~spdg~ 1280 (1344)
.... .... .+...-....+....+... |-.++ ..++.+.+. .+..++. ..+..-........+.+...
T Consensus 109 ~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~--GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~ 181 (410)
T PF04841_consen 109 FGEF-QFSLGEEIEEEKVLECRIFAIWFYKN--GIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWT 181 (410)
T ss_pred CCce-eechhhhccccCcccccccccccCCC--CEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccc
Confidence 7433 1100 0000000111222222222 43333 334444433 2221121 11111111111111111111
Q ss_pred EEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1281 IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1281 ~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.+...+.++.+.|.-..|..+..+.. +....-...+++..++.||+|+++|.-..+|.+.|.
T Consensus 182 ~i~~l~~~~~~~i~~~~g~~i~~i~~-~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 182 VIPLLSSDRVVEILLANGETIYIIDE-NSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred cceEeecCcceEEEEecCCEEEEEEc-cccccccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 11222333444444444444444433 221000113689999999999999999999998775
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.071 Score=67.92 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=106.5
Q ss_pred CchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchh
Q 000700 497 GIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQ 576 (1344)
Q Consensus 497 gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq 576 (1344)
.+||-|+|..++...|+|.++=+-|-++-...|.-+..+ .+.|.+=|++++ ++.|.++.=-|+.+ .
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kDl~d~N--~~iR~~AlR~ls~l-------~ 120 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA-----VNTIQKDLQDPN--EEIRGFALRTLSLL-------R 120 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhhccCCC--HHHHHHHHHHHHhc-------C
Confidence 359999999998899999998888877778877433322 345666666665 69999888777766 2
Q ss_pred HHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHH
Q 000700 577 EACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSL 656 (1344)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL 656 (1344)
.--+-+.++.-+.+++. |+.|.||+-+++|++++..-.+ ...-+.+....+-.++.|.+|.|-++|+.+|
T Consensus 121 ~~el~~~~~~~ik~~l~-------d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl 190 (757)
T COG5096 121 VKELLGNIIDPIKKLLT-------DPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASL 190 (757)
T ss_pred hHHHHHHHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHH
Confidence 33356667777777888 9999999999999999985322 2334444566677888999999999999999
Q ss_pred hhhc
Q 000700 657 GTLL 660 (1344)
Q Consensus 657 ~~~i 660 (1344)
..+-
T Consensus 191 ~~i~ 194 (757)
T COG5096 191 AEID 194 (757)
T ss_pred HHhc
Confidence 8876
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.41 Score=57.56 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=97.9
Q ss_pred EEEecCCCeEEEE-ECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCC-------CEEEEEECCCeEEEEECCCC
Q 000700 1137 VDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG-------GQLAAGFVDGSVRLYDVRTP 1208 (1344)
Q Consensus 1137 v~ws~~~~~Llag-g~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg-------~~L~sGs~DGsVrIwDlr~~ 1208 (1344)
+-...+.+.|+.. +....++-.|+++++ .+..+..+.+-.+..+ .++. ..-+.|-.|..|.-||.|-.
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~di~mv~~---t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDDINMVDI---TPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccce-eeeEeeccCCcceeec---cCCcchhcccccccEEeecCCceEEeccccc
Confidence 3344455555554 455678899999999 9999988766223332 2222 22345778889999999954
Q ss_pred Ce-eeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEe
Q 000700 1209 DM-LVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1286 (1344)
Q Consensus 1209 ~~-~v~~~~~~~-~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS 1286 (1344)
.. .....+.+. .......|.+-.. ..+||+||.+|.|++||-- +...-..+.+-..+|..+.++.+|.+|++.+
T Consensus 415 ~~~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 415 GKNKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CcceeeeeeccccccccccceeeecC---CceEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 42 111111111 1123344554433 5689999999999999973 3355566777888999999999999887655
Q ss_pred CCCeEEEEe
Q 000700 1287 AKQLIKVFS 1295 (1344)
Q Consensus 1287 ~Dg~I~Iwd 1295 (1344)
. ..+.+.+
T Consensus 491 ~-tyLlLi~ 498 (644)
T KOG2395|consen 491 K-TYLLLID 498 (644)
T ss_pred c-cEEEEEE
Confidence 4 5666666
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.73 Score=55.85 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=102.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEE--eeC---CCCCCCCeEEEEEEe---eCCC---CEEEEEECC
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNS--FDN---HDFPDKGISKLCLVN---ELDV---SLLLVASCN 1099 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~--~~~---h~~~~~~ItsL~f~n---s~d~---~~L~tgs~D 1099 (1344)
.++|++++.| +--++|+|..+|.+.|.|+.....+.. +.. .......|+++.|.- ..|+ -+|++|.+.
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999997 445999999999999999976666655 222 111235788888841 1233 478999999
Q ss_pred CeEEEEeccC-CCCceeEEeeeecccCCCCCccccceEEEEecCC--------------------CeEEEEECCCeEEEE
Q 000700 1100 GNIRIWKDYD-QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQS--------------------GYLYASGEVSSIMLW 1158 (1344)
Q Consensus 1100 G~IrIWdl~~-~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~--------------------~~Llagg~Dg~I~VW 1158 (1344)
|.+.+|++.- ..+... +........+.+.+..+ ..++.++ ..+++...+..|+++
T Consensus 165 G~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I---~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFS-VQFAGATTNHDSPILSI---IPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp SEEEEEEEEE-GGG-EE-EEEEEEE--SS----EE---EEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred CCEEEEEEecCCCCceE-EEEeeccccCCCceEEE---EEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999852 222222 11111122344444442 2222111 224555556779999
Q ss_pred ECCCCceeeeeecCCCCCCeeEEEEE----cCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCC
Q 000700 1159 DLEKEQQMVNPIPSSSDCSISALTAS----QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1159 Dl~~~~~~v~~i~~~~~~~VtsL~~~----s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~ 1234 (1344)
...+.+ ..+..... ......+.+. ...+..|++-..+|.|++|.+-.-+......-....+...+....++++
T Consensus 241 ~~~~~k-~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~- 317 (395)
T PF08596_consen 241 KPPKSK-GAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN- 317 (395)
T ss_dssp -TT----EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT-
T ss_pred eCCCCc-ccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC-
Confidence 988877 44443321 1112222222 2356778889999999999998766333221111111123334555665
Q ss_pred CCCEEEEEE
Q 000700 1235 DPAKIVSAS 1243 (1344)
Q Consensus 1235 ~g~~Lasgs 1243 (1344)
|+.++-.+
T Consensus 318 -Gdi~~~~g 325 (395)
T PF08596_consen 318 -GDIFYWTG 325 (395)
T ss_dssp -S-EEEE-S
T ss_pred -CCEEEEeC
Confidence 66554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.7 Score=48.14 Aligned_cols=217 Identities=14% Similarity=0.201 Sum_probs=118.5
Q ss_pred CCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceee
Q 000700 1088 LDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV 1167 (1344)
Q Consensus 1088 ~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v 1167 (1344)
..++.|+.|..+| +.+++.....+..+.. +...|.. +..-++-+.+++-++ +.++++++..-. ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~q----l~vl~~~~~llvLsd-~~l~~~~L~~l~-~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQ----LSVLPELNLLLVLSD-GQLYVYDLDSLE-PV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEE----EEEecccCEEEEEcC-CccEEEEchhhc-cc
Confidence 4678999999998 8888883212222211 1112554 444455566665544 999999987654 22
Q ss_pred eee-------------cCCCCCCeeEEE-EEcCCCCEEEEEECCCeEEEEECCCCC----eeeEeecCCCCCCCCeEEEE
Q 000700 1168 NPI-------------PSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPD----MLVCSTRPHTQQVERVVGIS 1229 (1344)
Q Consensus 1168 ~~i-------------~~~~~~~VtsL~-~~s~dg~~L~sGs~DGsVrIwDlr~~~----~~v~~~~~~~~h~~~I~sva 1229 (1344)
..- .......+...+ .....+...++......|.+|...... ...+.+. . ...+.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l---p~~~~~i~ 145 (275)
T PF00780_consen 70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L---PDPPSSIA 145 (275)
T ss_pred cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c---CCCcEEEE
Confidence 210 111111244442 122344444455556689998877642 1333332 2 26788999
Q ss_pred EecCCCCCEEEEEECCCcEEEEECCCCccceEEEecC------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 000700 1230 FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH------------RGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1230 ~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h------------~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~ 1297 (1344)
|.. +.++.|..+ ...+.|+.++ .....+... ..++..+... ++.+|++. |..-.+.|..
T Consensus 146 ~~~----~~i~v~~~~-~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 146 FLG----NKICVGTSK-GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred EeC----CEEEEEeCC-ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC
Confidence 974 477777755 4788899865 333222211 1233344443 35666653 3444555677
Q ss_pred CceEE--EEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1298 GEQLG--TIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1298 g~~l~--~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|+... .+.. ...+.++++. ..+|++.+. +.|.||+
T Consensus 217 G~~~r~~~i~W---------~~~p~~~~~~--~pyli~~~~-~~iEV~~ 253 (275)
T PF00780_consen 217 GEPSRKSTIQW---------SSAPQSVAYS--SPYLIAFSS-NSIEVRS 253 (275)
T ss_pred CCcCcccEEEc---------CCchhEEEEE--CCEEEEECC-CEEEEEE
Confidence 76554 3332 1355666663 347777655 4588874
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.016 Score=57.22 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=64.9
Q ss_pred hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 581 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+-.++..++.+|.. ..+|..-+-+|.=||.|+.-+|.++.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 41 ~~~llk~L~~lL~~------s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDK------SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcc------CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44677888888853 558999999999999999999999999988899999999999999999999999999987
Q ss_pred c
Q 000700 661 D 661 (1344)
Q Consensus 661 ~ 661 (1344)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.4 Score=55.16 Aligned_cols=193 Identities=17% Similarity=0.200 Sum_probs=120.9
Q ss_pred CchhhHHHHhhchhhHHHHHHHHH-HHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhh
Q 000700 457 EQLPIVLQVLLSQCHRFRALVLLG-RFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDL 535 (1344)
Q Consensus 457 ~~lP~vLq~LlS~~~rlral~ll~-~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l 535 (1344)
.-.|-+.++.-+...+.+-.--|+ |-|.....=..--+.-|.+|..++|||++.--+-.--||.. |=+++.|---. +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCI-rnisihplNe~-l 328 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACI-RNISIHPLNEV-L 328 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHH-hhcccccCccc-c
Confidence 345555565555555444333221 22211111122334569999999999987432222223322 22566554333 3
Q ss_pred hhcCC-chhhhhhccCCCCchHHHHHH-HHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Q 000700 536 VKDGG-HAYFIRFLDSMEAYPEQRAMA-AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 613 (1344)
Q Consensus 536 ~k~~~-~~yf~~~L~~~~~~~~~r~~~-afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~ 613 (1344)
+-+.| ..-.+++|...++ |.-|.. .=.|=-+-..+.....+-+..+++.+|.+++- |..-+||.=.--|
T Consensus 329 I~dagfl~pLVrlL~~~dn--EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-------D~pvsvqseisac 399 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDN--EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-------DGPVSVQSEISAC 399 (550)
T ss_pred eecccchhHHHHHHhcCCc--hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-------cCChhHHHHHHHH
Confidence 33444 4557778876665 333322 22332233346777788889999999999998 6667788877788
Q ss_pred HHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcc
Q 000700 614 LGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 614 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
+++|--+ +.-|..-.+.++...|++++.|.+-|||--+.-||+.|-+
T Consensus 400 ~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 400 IAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 8887643 3445556888888899999999999999999999999973
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.60 E-value=8 Score=50.36 Aligned_cols=105 Identities=13% Similarity=0.213 Sum_probs=65.3
Q ss_pred CeEEEEEecCCCCCEEEEEEC----------CCcEEEEECCCCccceEEEecC--CCCeEEEEEcCCCCEEEEEeCCCeE
Q 000700 1224 RVVGISFQPGLDPAKIVSASQ----------AGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGSAKQLI 1291 (1344)
Q Consensus 1224 ~I~sva~sp~~~g~~Lasgs~----------DG~I~IWDlr~~~~~v~tl~~h--~~~Vtsla~spdg~~LasgS~Dg~I 1291 (1344)
.|.++.|..+ .+.++++|+. .|.|.+|.+... ..++....+ ++.+.++..- +|+++|.- +..|
T Consensus 776 Si~s~~~~~d-~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~v 850 (1096)
T KOG1897|consen 776 SIISCKFTDD-PNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSV 850 (1096)
T ss_pred eeeeeeecCC-CceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhhh-CCeEEEec--CcEE
Confidence 4555667776 4677777763 588889888873 344444333 3455555443 56777654 4789
Q ss_pred EEEeCCCc-eEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEE
Q 000700 1292 KVFSLEGE-QLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1292 ~Iwd~~g~-~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
++|+.+.+ .+..-.. | ..++..+...-.|..+++|..=++|.
T Consensus 851 rLye~t~~~eLr~e~~-~-------~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 851 RLYEWTTERELRIECN-I-------SNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred EEEEccccceehhhhc-c-------cCCeEEEEEEecCcEEEEeeccceEE
Confidence 99995544 4443333 3 25677777777777777776655544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.03 Score=41.33 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.1
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1258 DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1258 ~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
.+...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.53 E-value=5.7 Score=45.60 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=132.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECC------CC-cEEEEeeCCC--CCCCCeEEEEEEeeCCC------------C
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYE------ED-TLLNSFDNHD--FPDKGISKLCLVNELDV------------S 1091 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~dg~I~VWd~~------tg-~~l~~~~~h~--~~~~~ItsL~f~ns~d~------------~ 1091 (1344)
-...|+|+|.+.+-++....+...+||.. .. .++.++.... ......+.+.|. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN--~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN--GSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe--CCCceEEcCCCcccce
Confidence 35689999999887877788999999986 11 3333444211 112467788882 222 2
Q ss_pred EEEEEECCCeEEEEeccCCCCceeEEeeeecccCC-CCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeee-
Q 000700 1092 LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH-KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN- 1168 (1344)
Q Consensus 1092 ~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h-~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~- 1168 (1344)
.++.+++||+|.-|....... .+..+...+... ...|.. ++.+.-...+..|+++. ..++|.|||-.-.. ...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t--~~~~~~~~~d~s~~gavYk-GLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTT--RMTRAEIVVDASQQGNVYK-GLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcc--cccccEEEEccCCCcceee-eeEEeecCCCceEEEeccCCCceEEecCcccc-ccCC
Confidence 367788999999999644212 000111112111 233332 23333334467788774 68899999865332 110
Q ss_pred -e-----ecCCC-CCCeeEE--------EEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000700 1169 -P-----IPSSS-DCSISAL--------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1233 (1344)
Q Consensus 1169 -~-----i~~~~-~~~VtsL--------~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~ 1233 (1344)
. ++..- .-.|..+ +...++++.=+.|-.-|.|-+||.... .++.+ ...+.-..-..|+.-|.
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~-as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV-ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe-ccCCcccCCceeeeChh
Confidence 0 11100 0012211 012223333344556689999998654 44444 33344455667777664
Q ss_pred ----CCCCEEEEEECCCcEEEEECCCCccceEEEecCC------CCeEEEEEcC
Q 000700 1234 ----LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR------GSLSALAVHR 1277 (1344)
Q Consensus 1234 ----~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~------~~Vtsla~sp 1277 (1344)
..+.+|+----||+|..||..++ ..+-.+.... ..++.|+|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCC-ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 23667777677999999999877 5555555432 3578888875
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.044 Score=40.38 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCeEEEcC
Q 000700 1317 GSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1317 ~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..|.++.|++++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 7899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.28 Score=61.94 Aligned_cols=179 Identities=18% Similarity=0.164 Sum_probs=131.0
Q ss_pred CCCchhhHHHHhhchhhHHHHHH--HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh
Q 000700 455 PPEQLPIVLQVLLSQCHRFRALV--LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532 (1344)
Q Consensus 455 ~p~~lP~vLq~LlS~~~rlral~--ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q 532 (1344)
...-+|-|.+++.|+.++.|-+. .+..|.+..|-...|+ ..-+.|=|+++.+..|..++=.++.|.. +.--
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh
Confidence 34688999999999999998887 4678898888866664 3556788888888888888777777762 2211
Q ss_pred hhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Q 000700 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 612 (1344)
Q Consensus 533 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l 612 (1344)
+.+.....+.|.+++ |.-|.=++.++..+.+.+|.- ++..+.+.+..+|. |++|.|+..++.
T Consensus 113 -----~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~-------d~~~~V~~~a~~ 174 (526)
T PF01602_consen 113 -----EPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLS-------DKDPSVVSAALS 174 (526)
T ss_dssp -----HHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTT-------HSSHHHHHHHHH
T ss_pred -----hHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhcc-------CCcchhHHHHHH
Confidence 223445666676555 588999999999999887762 22226888889998 889999999999
Q ss_pred HHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 613 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 613 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+|..+ ...+..-. .+-......|..++.+++|-++..++-.|..+.
T Consensus 175 ~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 175 LLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 99999 33333211 222333456777789999999999999999887
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.81 Score=44.80 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=70.5
Q ss_pred eEEEEEecC--CCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEE
Q 000700 1225 VVGISFQPG--LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLG 1302 (1344)
Q Consensus 1225 I~sva~sp~--~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~ 1302 (1344)
|+++++..- .+.+.|++||.|..|++|+-. +.+.++..+ ..|+++.-... ..++.+..+|+|-+|+.. ..+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceee
Confidence 556666542 134789999999999999865 566666643 46777777665 578899999999999863 3333
Q ss_pred EEeccCCccccccCCCeEEEEEecC---C-CEEEEEECCCeEEE
Q 000700 1303 TIRYHHPSFMAQKIGSVNCLTFHPY---Q-VLLAAGSADACVSI 1342 (1344)
Q Consensus 1303 ~l~~~h~~f~~~~~~~V~slafspd---g-~~Lasgs~Dg~I~I 1342 (1344)
.++. ...+.++++..- | .-|++|=.+|.|-+
T Consensus 76 RiKS---------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS---------KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc---------CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4443 134666665433 2 46888888888754
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.38 E-value=12 Score=47.54 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=89.3
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCC-CCCeEEEEEEeeCCCCEEEEEEC------CCeEEEEeccCCCCcee
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFP-DKGISKLCLVNELDVSLLLVASC------NGNIRIWKDYDQKDKQK 1115 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~-~~~ItsL~f~ns~d~~~L~tgs~------DG~IrIWdl~~~~~~~~ 1115 (1344)
+..+++++.++.+.-.|.++|+.+-.+...... ...+++--.+ .+..++++.. +|.|..+|..+ ++..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v---~~g~Vivg~~~~~~~~~G~v~AlD~~T--G~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV---VKGKVITGISGGEFGVRGYVTAYDAKT--GKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE---ECCEEEEeecccccCCCcEEEEEECCC--Ccee
Confidence 346777888999999999999998776543211 0112221111 1334555432 67888888765 3221
Q ss_pred EEeeeecccC----------------------------CCCCccccceEEEEecCCCeEEEEEC-----CC---------
Q 000700 1116 LVTAFSSIQG----------------------------HKPGVRCSNVVVDWQQQSGYLYASGE-----VS--------- 1153 (1344)
Q Consensus 1116 lvs~~~~l~~----------------------------h~~~V~s~~~~v~ws~~~~~Llagg~-----Dg--------- 1153 (1344)
- .+..... -...++. ...+.+..+.++.+.. ++
T Consensus 195 W--~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~---~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 195 W--RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWG---TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred E--eccCcCCCcccccccccccccccccCCCCCCccccCCCCccC---ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 1 1111111 0122332 2566777788887742 12
Q ss_pred --eEEEEECCCCceeeeeecCCCCC-------CeeEEEEEcCCCC---EEEEEECCCeEEEEECCCCCe
Q 000700 1154 --SIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQVHGG---QLAAGFVDGSVRLYDVRTPDM 1210 (1344)
Q Consensus 1154 --~I~VWDl~~~~~~v~~i~~~~~~-------~VtsL~~~s~dg~---~L~sGs~DGsVrIwDlr~~~~ 1210 (1344)
.|.-.|+++++ ..-.++..+.. .-..+.-...+|+ .++.+..+|.+.+.|.++++.
T Consensus 270 ~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 270 TSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 57777888888 66555532111 0111111224565 788999999999999999874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.36 E-value=5.6 Score=47.62 Aligned_cols=263 Identities=11% Similarity=0.099 Sum_probs=132.4
Q ss_pred cCCCCEEEEE---------ECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCC
Q 000700 1040 QPFSPIVVAA---------DENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1040 spdg~~Latg---------s~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~ 1110 (1344)
|||+++++.. +..+.+.|||+++++....... . ..+....| +|+|+.++-.. ++.|.+++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~--sP~g~~~~~v~-~~nly~~~~~~- 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKW--SPDGKYIAFVR-DNNLYLRDLAT- 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE---SSSTEEEEEE-TTEEEEESSTT-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---ccccccee--ecCCCeeEEEe-cCceEEEECCC-
Confidence 6888877774 2357889999998765554433 3 57888888 78999998886 46899988755
Q ss_pred CCceeEEeeee---cccCCCC-----CccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCC-CCCCeeE
Q 000700 1111 KDKQKLVTAFS---SIQGHKP-----GVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS-SDCSISA 1180 (1344)
Q Consensus 1111 ~~~~~lvs~~~---~l~~h~~-----~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~-~~~~Vts 1180 (1344)
+....++.-. .+.|-.. .|......+-|+|++.+|+... ++..|+.+.+.... ..+ .-..+..
T Consensus 73 -~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~------~~~~~yp~~~~ 145 (353)
T PF00930_consen 73 -GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS------PPDSQYPEVES 145 (353)
T ss_dssp -SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES------SSTESS-EEEE
T ss_pred -CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC------CccccCCcccc
Confidence 2222111100 0000000 1111122488999999998874 55555554432111 000 0011344
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec-CCCCCCCCeEEEEEecCCCCCEEEEE--ECCC---cEEEEECC
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR-PHTQQVERVVGISFQPGLDPAKIVSA--SQAG---DIQFLDIR 1254 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~-~~~~h~~~I~sva~sp~~~g~~Lasg--s~DG---~I~IWDlr 1254 (1344)
+ ..+.-|.--.. -.+.++|+.+++....... ........+..+.|.++ +..|+.. +.+. .+.++|..
T Consensus 146 ~-~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d--~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 I-RYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD--GKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp E-E--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET--TEEEEEEEEETTSTEEEEEEEEEC
T ss_pred c-ccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCC--CcEEEEEEcccCCCEEEEEEEECC
Confidence 4 22222222111 1466788887763211111 01122467889999998 7634433 3332 36777887
Q ss_pred CCccceEEEecCCCCe---EEEEEc-CCCC-EEEEEeCCCe--EEEEeCCCceEEEEeccCCccccccCCCeEE-EEEec
Q 000700 1255 NHKDAYLTIDAHRGSL---SALAVH-RHAP-IIASGSAKQL--IKVFSLEGEQLGTIRYHHPSFMAQKIGSVNC-LTFHP 1326 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~~~V---tsla~s-pdg~-~LasgS~Dg~--I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~s-lafsp 1326 (1344)
++...+.......+.| ....+. +++. ++.....||. |.+++.++.....+.. .. -.|.. +.|++
T Consensus 219 tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G~-------~~V~~i~~~d~ 290 (353)
T PF00930_consen 219 TGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-GD-------WEVTSILGWDE 290 (353)
T ss_dssp TTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--SS-------S-EEEEEEEEC
T ss_pred CCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-Cc-------eeecccceEcC
Confidence 7632222222223332 244444 5555 5555556665 4555677777665553 21 34544 67788
Q ss_pred CCCEEE
Q 000700 1327 YQVLLA 1332 (1344)
Q Consensus 1327 dg~~La 1332 (1344)
+++.+.
T Consensus 291 ~~~~iy 296 (353)
T PF00930_consen 291 DNNRIY 296 (353)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 775544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.65 Score=45.46 Aligned_cols=102 Identities=17% Similarity=0.297 Sum_probs=67.9
Q ss_pred eeEEEEEcCCC---CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECC
Q 000700 1178 ISALTASQVHG---GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1254 (1344)
Q Consensus 1178 VtsL~~~s~dg---~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr 1254 (1344)
|++|+.++-++ +.|++|+.|..||+|+-. + .+..+.. .+.|++++-.. +..++.|..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e-~~~Ei~e----~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E-IVAEITE----TDKVTSLCSLG---GGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c-EEEEEec----ccceEEEEEcC---CCEEEEEecCCEEEEEeCc
Confidence 66665555443 689999999999999754 2 4444422 26788887654 4679999999999999864
Q ss_pred CCccceEEEecCCCCeEEEEEcC-C--C-CEEEEEeCCCeEEE
Q 000700 1255 NHKDAYLTIDAHRGSLSALAVHR-H--A-PIIASGSAKQLIKV 1293 (1344)
Q Consensus 1255 ~~~~~v~tl~~h~~~Vtsla~sp-d--g-~~LasgS~Dg~I~I 1293 (1344)
. .+..++. +..++++.+.. + | +-|++|-.+|.|-+
T Consensus 72 ~---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 2333332 23466666543 2 2 26888888887753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.071 Score=65.10 Aligned_cols=93 Identities=13% Similarity=0.233 Sum_probs=74.8
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeC-CCce
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLS-ALAVHRHAPIIASGSAKQLIKVFSL-EGEQ 1300 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vt-sla~spdg~~LasgS~Dg~I~Iwd~-~g~~ 1300 (1344)
..|.-+.|+|. -..+|.+..+|.|.+..+. . +.+.++..|+..++ +++|.|||+.||.|-.||+|++.|. +|..
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n-~-qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN-W-QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec-c-ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 56888999999 9999999999999999888 4 67888887777777 9999999999999999999999995 4555
Q ss_pred EEEEeccCCccccccCCCeEEEEEec
Q 000700 1301 LGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1301 l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
+..... . ....|.++-|.+
T Consensus 97 l~~~~~-s------~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLF-S------VETDISKGIWDR 115 (665)
T ss_pred eecccc-c------cccchheeeccc
Confidence 554211 0 125677777753
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.84 Score=58.10 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-C-----eEEEEecc
Q 000700 1041 PFSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-G-----NIRIWKDY 1108 (1344)
Q Consensus 1041 pdg~~Latgs~d------g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G-----~IrIWdl~ 1108 (1344)
..+.++++|+.+ ..+..||..+++......-.. ...-.+++.. ++.+.++||.| | .+..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~--~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS--PRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc--ccccccEEEE---CCEEEEEccccCCCcccceEEEecCC
Confidence 344566666655 467788888774443322222 1234455553 56888889888 3 45566665
Q ss_pred CCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeeEEE
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1109 ~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg-----~I~VWDl~~~~~-~v~~i~~~~~~~VtsL~ 1182 (1344)
. +. |.........-...+ ++- -+|...++||.|| +|-.||..+.+. .+...... ..+..
T Consensus 358 ~--~~------W~~~a~M~~~R~~~~--v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~----r~~~g 422 (571)
T KOG4441|consen 358 T--NQ------WTPVAPMNTKRSDFG--VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR----RSGHG 422 (571)
T ss_pred C--Cc------eeccCCccCccccce--eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc----eeeeE
Confidence 4 22 222222221111111 111 1455566677775 477888877651 11112221 22222
Q ss_pred EEcCCCCEEEEEECCC------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-----EEEE
Q 000700 1183 ASQVHGGQLAAGFVDG------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-----IQFL 1251 (1344)
Q Consensus 1183 ~~s~dg~~L~sGs~DG------sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-----I~IW 1251 (1344)
...-+|.+.++|+.+| +|..||..++. ............... ++.- ++.+.+.|+.||. |..|
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g-~a~~---~~~iYvvGG~~~~~~~~~VE~y 496 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFG-VAVL---NGKIYVVGGFDGTSALSSVERY 496 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccce-EEEE---CCEEEEECCccCCCccceEEEE
Confidence 2233688888888665 46788888765 222212211112222 3332 3788889988873 7778
Q ss_pred ECCCCccceEEEe---cCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEe
Q 000700 1252 DIRNHKDAYLTID---AHRGSLSALAVHRHAPIIASGSAKQ-----LIKVFS 1295 (1344)
Q Consensus 1252 Dlr~~~~~v~tl~---~h~~~Vtsla~spdg~~LasgS~Dg-----~I~Iwd 1295 (1344)
|..+. ....+. .....+....+ ++.+.++|+.|| +|..||
T Consensus 497 dp~~~--~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 497 DPETN--QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred cCCCC--ceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcC
Confidence 88865 222222 12222222222 566778888765 355565
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.96 Score=57.59 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=107.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC------CeEEEEeccCCCCceeEEeeeecccCC
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GNIRIWKDYDQKDKQKLVTAFSSIQGH 1126 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------G~IrIWdl~~~~~~~~lvs~~~~l~~h 1126 (1344)
..+..||..+++....-.... + ..-.+++. -++.+.++||.+ ..+..||... +.. ..+...
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~-~-r~~~~~a~---l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W------~~~~~m 338 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPN-H-IINYASAI---VDNEIIIAGGYNFNNPSLNKVYKINIEN--KIH------VELPPM 338 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCc-c-ccceEEEE---ECCEEEEEcCCCCCCCccceEEEEECCC--CeE------eeCCCC
Confidence 356778887765332211111 0 11122333 266777777754 2366677654 222 222222
Q ss_pred CCCccccceEEEEecCCCeEEEEECCC-----eEEEEECCCCce-eeeeecCCCCCCeeEEEEEcCCCCEEEEEECCC--
Q 000700 1127 KPGVRCSNVVVDWQQQSGYLYASGEVS-----SIMLWDLEKEQQ-MVNPIPSSSDCSISALTASQVHGGQLAAGFVDG-- 1198 (1344)
Q Consensus 1127 ~~~V~s~~~~v~ws~~~~~Llagg~Dg-----~I~VWDl~~~~~-~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG-- 1198 (1344)
..+... ..++- -++...++||.++ .+..||..+... .+..++..... . ++... +|.+.+.|+.++
T Consensus 339 ~~~R~~--~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~-~-~~~~~--~g~IYviGG~~~~~ 411 (557)
T PHA02713 339 IKNRCR--FSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS-Y-GMCVL--DQYIYIIGGRTEHI 411 (557)
T ss_pred cchhhc--eeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc-c-cEEEE--CCEEEEEeCCCccc
Confidence 111111 11111 1344555566543 488899887650 11222222111 1 12122 677888887653
Q ss_pred ---------------------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEE
Q 000700 1199 ---------------------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFL 1251 (1344)
Q Consensus 1199 ---------------------sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG------~I~IW 1251 (1344)
+|..||..+.+ .............. +++.. ++.+.+.|+.++ .|..|
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~~-~~~~~---~~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTGTIRP-GVVSH---KDDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCe--EeecCCCCcccccC-cEEEE---CCEEEEEeCCCCCCccceeEEEe
Confidence 47778887654 22221211111111 22222 267777777542 46789
Q ss_pred ECCC-Cc-cceEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCceEEEEe
Q 000700 1252 DIRN-HK-DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQ--LIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1252 Dlr~-~~-~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg--~I~Iwd~~g~~l~~l~ 1305 (1344)
|..+ .. ..+..+.........+.+ ++.+.++|+.++ .+..||.....-..+.
T Consensus 486 dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 486 NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence 9886 31 222333322222222223 678999999888 6777886544444433
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.091 Score=64.18 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=71.8
Q ss_pred EEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCee-EEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEee
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSIS-ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1215 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vt-sL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~ 1215 (1344)
+.|+|.-..++.+..+|.|.+..+. .+ .+.+++.+... ++ ++ +|.+||+.++.|..||+|++.|..++..+....
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~-v~~sL-~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGEN-VTASL-CWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cc-eeEeccCCCCc-cceee-eecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 8999999999999999999999888 55 68888866555 55 88 788999999999999999999999887444321
Q ss_pred cCCCCCCCCeEEEEEecC
Q 000700 1216 RPHTQQVERVVGISFQPG 1233 (1344)
Q Consensus 1216 ~~~~~h~~~I~sva~sp~ 1233 (1344)
.. -...|.++.|.+.
T Consensus 102 ~s---~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 102 FS---VETDISKGIWDRI 116 (665)
T ss_pred cc---cccchheeecccc
Confidence 11 2367888888643
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.27 Score=63.64 Aligned_cols=190 Identities=9% Similarity=0.003 Sum_probs=117.9
Q ss_pred EEecCCCeEEEEECCCeEEEEECC--------CCce-------eeeeecCCCCCCeeEEEEEcCCCCEEEE--EECCCeE
Q 000700 1138 DWQQQSGYLYASGEVSSIMLWDLE--------KEQQ-------MVNPIPSSSDCSISALTASQVHGGQLAA--GFVDGSV 1200 (1344)
Q Consensus 1138 ~ws~~~~~Llagg~Dg~I~VWDl~--------~~~~-------~v~~i~~~~~~~VtsL~~~s~dg~~L~s--Gs~DGsV 1200 (1344)
+.++.-+.+++++..+.+.|+-.. .... ...++..+...+|..+ ...+|+...++ .+.+-.|
T Consensus 48 a~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~-v~~~D~t~s~v~~tsng~~v 126 (1405)
T KOG3630|consen 48 AISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIF-VCFHDATDSVVVSTSNGEAV 126 (1405)
T ss_pred hcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEE-EeccCCceEEEEEecCCceE
Confidence 334445566666666655554322 1110 1133444445555555 33445544333 3344478
Q ss_pred EEEECCCCCeee-------EeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEE
Q 000700 1201 RLYDVRTPDMLV-------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273 (1344)
Q Consensus 1201 rIwDlr~~~~~v-------~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsl 1273 (1344)
..||+++-.... +.-+..........++.|.|. -....+....|+.|++..+......+.++. -....+++
T Consensus 127 ~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav 204 (1405)
T KOG3630|consen 127 YSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAV 204 (1405)
T ss_pred EEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeE
Confidence 999998543111 111111122344567888887 445667788899999988875533344433 34568999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEE
Q 000700 1274 AVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1334 (1344)
Q Consensus 1274 a~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasg 1334 (1344)
+|+|.|..++.|-..|++.-|...++....+.+ ..... ...|.++.|-....+|++-
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp~~e---~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PPVEE---NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecccceeecccC-CCcCC---CcceeEEEEecceeEEEEe
Confidence 999999999999999999999988887777765 33221 4789999998877777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.038 Score=60.04 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=84.7
Q ss_pred CEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCC
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG 1268 (1344)
Q Consensus 1189 ~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~ 1268 (1344)
..+.+.+.||.|+-+++|..+...+.-.- |.....-+ . .+..+++|+.+|.|.+|.....+.....+..-..
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~---~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVV---T--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhh---hhcceeec---c--cCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 34666788999999999876532222111 11221111 1 3678999999999999988743322222221122
Q ss_pred Ce-EEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEE--ECCCeEEEcC
Q 000700 1269 SL-SALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG--SADACVSIHS 1344 (1344)
Q Consensus 1269 ~V-tsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasg--s~Dg~I~IWd 1344 (1344)
.| ..+..-.++.+.++++.||.|+-|++.-.....+.++|. | .++..+..+..++.++.+ |.|..++.|+
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~-~-----~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN-F-----ESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeecccc-C-----CCcceeEEecCCceEEeeccccchhhhhcc
Confidence 22 233333455688999999999999965444333333243 1 455555556666677777 7777777775
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.81 E-value=4.7 Score=45.96 Aligned_cols=201 Identities=10% Similarity=0.151 Sum_probs=126.4
Q ss_pred cCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEE
Q 000700 1124 QGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLY 1203 (1344)
Q Consensus 1124 ~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIw 1203 (1344)
.+....+.+ +.|+|+.+.|++..+...-.||=..+++ .+.+++-..-..--.+.+. .+|.+.++--.++.+.++
T Consensus 82 ~g~~~nvS~----LTynp~~rtLFav~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 82 LGETANVSS----LTYNPDTRTLFAVTNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccccccc----eeeCCCcceEEEecCCCceEEEEecCCc-eEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEE
Confidence 444444666 9999999999999988877777667777 8888875432223445333 455555555567888887
Q ss_pred ECCCCCeeeE------eecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccce--EEEecC-------CC
Q 000700 1204 DVRTPDMLVC------STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY--LTIDAH-------RG 1268 (1344)
Q Consensus 1204 Dlr~~~~~v~------~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v--~tl~~h-------~~ 1268 (1344)
-+........ .+......+...-.++|.|. .+.|..+-.-.=+.||.+......+ .....+ -.
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 7665432111 11111112567789999999 7777777766667777666432111 111111 12
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCceEEEEeccCCcccc--ccCCCeEEEEEecCCCEEEE
Q 000700 1269 SLSALAVHRH-APIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMA--QKIGSVNCLTFHPYQVLLAA 1333 (1344)
Q Consensus 1269 ~Vtsla~spd-g~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~--~~~~~V~slafspdg~~Las 1333 (1344)
.|+++.|++. +.+++-+.+++.+.-.|.+|+.+..+.- +.++.+ .....--.++..++|.+-++
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 4778888875 5577777788888889999998777765 554422 23344566777777755444
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.026 Score=42.10 Aligned_cols=25 Identities=44% Similarity=0.756 Sum_probs=22.4
Q ss_pred hHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 636 IYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 636 ~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
.++.+++|++|+||.+++.+|+.+.
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999987
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=57.50 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=68.0
Q ss_pred hchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhcc--CCCHHHHHHHHHHHhhh
Q 000700 582 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS--EPQPEVRASAVFSLGTL 659 (1344)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~--D~sP~VRaa~v~aL~~~ 659 (1344)
...++.+.+-|. ++++++|-=++++||||-.. ..++ .|.+.|. -..||||.+|..|||.+
T Consensus 186 EeaI~al~~~l~-------~~SalfrhEvAfVfGQl~s~----------~ai~-~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 186 EEAINALIDGLA-------DDSALFRHEVAFVFGQLQSP----------AAIP-SLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHHHHhcc-------cchHHHHHHHHHHHhhccch----------hhhH-HHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 345667777777 67999999999999999754 1222 3445553 34899999999999987
Q ss_pred cccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000700 660 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 716 (1344)
Q Consensus 660 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 716 (1344)
-+. .....|-..++|.+++||++..++|+..-
T Consensus 248 a~e-------------------------~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 248 ADE-------------------------DCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cCH-------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 611 11234556789999999999999998543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.71 E-value=5.2 Score=48.21 Aligned_cols=241 Identities=10% Similarity=0.100 Sum_probs=106.7
Q ss_pred CCCEEEEEE-CCCeEEEEeccCCCCceeEEeeeecccCCC-CCccccceEEEEecCCCeEEEE-E-C----CCeEEEEEC
Q 000700 1089 DVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYAS-G-E----VSSIMLWDL 1160 (1344)
Q Consensus 1089 d~~~L~tgs-~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~-~~V~s~~~~v~ws~~~~~Llag-g-~----Dg~I~VWDl 1160 (1344)
+.++|+..+ ..+.|.|.|+.+...+.++...+..-.-+. ........ +..-++++.++++ | . -|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT-~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHT-VHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEE-EEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCce-eeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 467777777 678999999987777777764332200010 01111111 3334566677776 2 2 256888898
Q ss_pred CCCceeeeeecCCC--CCCeeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCCeeeEeecCC
Q 000700 1161 EKEQQMVNPIPSSS--DCSISALTASQVHGGQLAAGFV--------------------DGSVRLYDVRTPDMLVCSTRPH 1218 (1344)
Q Consensus 1161 ~~~~~~v~~i~~~~--~~~VtsL~~~s~dg~~L~sGs~--------------------DGsVrIwDlr~~~~~v~~~~~~ 1218 (1344)
++.. ....+.... ...-..+ ++++..+.+++..- ..++.+||+.+.+ ..+++..-
T Consensus 165 ~tf~-v~g~We~~~~~~~~gYDf-w~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~~Q~idLg 241 (461)
T PF05694_consen 165 ETFE-VKGRWEKDRGPQPFGYDF-WYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-LLQTIDLG 241 (461)
T ss_dssp TT---EEEE--SB-TT------E-EEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-EEEEEES-
T ss_pred cccc-ccceeccCCCCCCCCCCe-EEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-EeeEEecC
Confidence 8877 666666532 2234566 78888888888642 3579999999988 66666332
Q ss_pred CCCCCCeEEEEEecCCCCCE-EEEEECCCcEEEEEC-CCCc---cceEEEecC-----------------CCCeEEEEEc
Q 000700 1219 TQQVERVVGISFQPGLDPAK-IVSASQAGDIQFLDI-RNHK---DAYLTIDAH-----------------RGSLSALAVH 1276 (1344)
Q Consensus 1219 ~~h~~~I~sva~sp~~~g~~-Lasgs~DG~I~IWDl-r~~~---~~v~tl~~h-----------------~~~Vtsla~s 1276 (1344)
........|.|..+....+ ++.+.-..+|..|-- ..+. +.+.++... ..-|+.|.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1223355666643311333 333334445555433 3221 222222211 2347899999
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCC----ceEEEEeccCCccc--------c-ccCCCeEEEEEecCCCEEEEEE
Q 000700 1277 RHAPIIASGS-AKQLIKVFSLEG----EQLGTIRYHHPSFM--------A-QKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1277 pdg~~LasgS-~Dg~I~Iwd~~g----~~l~~l~~~h~~f~--------~-~~~~~V~slafspdg~~Lasgs 1335 (1344)
.|.++|...+ .+|.|+.||++. +...++.- -..+. + .-.+...-+..|-||+.|...+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l-GG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL-GGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE--BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE-CcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9999877654 589999999753 33333332 00000 0 1112346678888998776654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.32 Score=54.24 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccch-HHHHhhhccCchh
Q 000700 557 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT-EAQTIGRRADAPA 635 (1344)
Q Consensus 557 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~-~~~~~~~~~~~~~ 635 (1344)
.-.-+|.+++.+....... ..-+-..++..++..+. ++..-+|+.+.-||-.++.... ..+ -...
T Consensus 69 v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~-------~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~ 134 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSH-FEPYADILLPPLLKKLG-------DSKKFIREAANNALDAIIESCSYSPK------ILLE 134 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----------HHHHHHHHHHHHHHHTTS-H--H------HHHH
T ss_pred HHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHc-------cccHHHHHHHHHHHHHHHHHCCcHHH------HHHH
Confidence 3345566777776555554 22234556677788888 7889999999999999998765 222 1144
Q ss_pred hHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000700 636 IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 715 (1344)
Q Consensus 636 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 715 (1344)
.+...+++.+|.||..++-.|..++...... ........ .=..+...+...+.|+.|.||+.+...+..+
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~-------~~~l~~~~---~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWGSD-------SSVLQKSA---FLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT------------GGG--HH---HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHccch-------Hhhhcccc---hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 6777889999999999999999999553200 00000000 0133555677788999999999999999887
Q ss_pred Hhhcc
Q 000700 716 AFGHK 720 (1344)
Q Consensus 716 ~~~~~ 720 (1344)
...|.
T Consensus 205 ~~~~~ 209 (228)
T PF12348_consen 205 YSHFP 209 (228)
T ss_dssp HHHH-
T ss_pred HHHCC
Confidence 65543
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=14 Score=44.67 Aligned_cols=240 Identities=12% Similarity=0.160 Sum_probs=142.3
Q ss_pred CeEEEEEcCCCCEEEEEECC-CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-EEEEEECCCeEEEEeccCC
Q 000700 1033 GTKTALLQPFSPIVVAADEN-ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-LLLVASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs~d-g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~-~L~tgs~DG~IrIWdl~~~ 1110 (1344)
.+..+...+++..+.+.... ..+.+-+.............. ..-..+.. ++.+. ..++...++.|.+.|....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---~~p~~i~v--~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---VYPAGVAV--NPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---ccccceee--CCCCCeEEEecCCCCeEEEEcCccc
Confidence 57778888888655544422 234444444111111111111 22334555 45666 4445555688999995441
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC---CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE---VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~---Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.. .... ..+. ... .++++++++.++++.. ++.+.+.|..+.. ....+..... + ..+ ..+++
T Consensus 107 ~~-~~~~-----~vG~--~P~----~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~-P-~~~-a~~p~ 170 (381)
T COG3391 107 TV-LGSI-----PVGL--GPV----GLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNT-P-TGV-AVDPD 170 (381)
T ss_pred ce-eeEe-----eecc--CCc----eEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCC-c-ceE-EECCC
Confidence 11 1111 1111 112 3888999999999854 6889999999888 7777655432 2 566 67888
Q ss_pred CCEEEEE-ECCCeEEEEECCCCCeeeEeecC--CCCCCCCeEEEEEecCCCCCEEEEEECC---CcEEEEECCCCccceE
Q 000700 1188 GGQLAAG-FVDGSVRLYDVRTPDMLVCSTRP--HTQQVERVVGISFQPGLDPAKIVSASQA---GDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1188 g~~L~sG-s~DGsVrIwDlr~~~~~v~~~~~--~~~h~~~I~sva~sp~~~g~~Lasgs~D---G~I~IWDlr~~~~~v~ 1261 (1344)
|+.++.. ..++.|.++|..... ..+ ... ...-...-..+.++++ |..+...... +.+...|...+ ....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~-v~~-~~~~~~~~~~~~P~~i~v~~~--g~~~yV~~~~~~~~~v~~id~~~~-~v~~ 245 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNS-VVR-GSVGSLVGVGTGPAGIAVDPD--GNRVYVANDGSGSNNVLKIDTATG-NVTA 245 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcc-eec-cccccccccCCCCceEEECCC--CCEEEEEeccCCCceEEEEeCCCc-eEEE
Confidence 8855554 478999999977655 321 100 0111234557889998 7765555443 58999998876 3333
Q ss_pred E-EecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCC
Q 000700 1262 T-IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSLEG 1298 (1344)
Q Consensus 1262 t-l~~h~~~Vtsla~spdg~~LasgS-~Dg~I~Iwd~~g 1298 (1344)
. ..........+.++|+|..+.+.. ..+.+.+.|...
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 3 221111456789999999887773 447888888543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.71 Score=56.12 Aligned_cols=118 Identities=19% Similarity=0.017 Sum_probs=84.6
Q ss_pred chhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000700 541 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620 (1344)
Q Consensus 541 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 620 (1344)
...++..|.+.+ +..|+=++--|+.+ -...+...++..|. +++|.||...+-++|..-.+
T Consensus 88 ~~~L~~~L~d~~--~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~-------~~~p~vR~aal~al~~r~~~ 147 (410)
T TIGR02270 88 LRSVLAVLQAGP--EGLCAGIQAALGWL-----------GGRQAEPWLEPLLA-------ASEPPGRAIGLAALGAHRHD 147 (410)
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHhcC-----------CchHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccC
Confidence 345666776544 35777777677655 24556778888888 88999998888888863222
Q ss_pred chHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC
Q 000700 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 700 (1344)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 700 (1344)
..+.+..+|+|.+|.||++++-+||.+-... ....|.....|.
T Consensus 148 ------------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~-------------------------a~~~L~~al~d~ 190 (410)
T TIGR02270 148 ------------PGPALEAALTHEDALVRAAALRALGELPRRL-------------------------SESTLRLYLRDS 190 (410)
T ss_pred ------------hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc-------------------------chHHHHHHHcCC
Confidence 2346888999999999999999999875210 011244557899
Q ss_pred ChhhHHHHHHHHHHH
Q 000700 701 SPLVRAEVAVALARF 715 (1344)
Q Consensus 701 sp~VR~e~~~~ls~~ 715 (1344)
++.||..++..++.+
T Consensus 191 ~~~VR~aA~~al~~l 205 (410)
T TIGR02270 191 DPEVRFAALEAGLLA 205 (410)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998665
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.14 Score=63.88 Aligned_cols=208 Identities=19% Similarity=0.224 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhcc
Q 000700 470 CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLD 549 (1344)
Q Consensus 470 ~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~ 549 (1344)
++-+-++.-+++++|-.+ ...++.|.++||+.++.. +|-+.++..|.++=..-+..-+++..|..|..=+.
T Consensus 309 ~~~ltpl~k~~k~ld~~e------yq~~i~p~l~kLF~~~Dr---~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~ 379 (690)
T KOG1243|consen 309 SDFLTPLFKLGKDLDEEE------YQVRIIPVLLKLFKSPDR---QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFL 379 (690)
T ss_pred hhhhhHHHHhhhhccccc------cccchhhhHHHHhcCcch---HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcc
Confidence 466778888888998888 557899999999998754 44466677777664444445678899999998776
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhh
Q 000700 550 SMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGR 629 (1344)
Q Consensus 550 ~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~ 629 (1344)
+.+. -+|.-..-+++.|.--. ++. -++.+++..+...-. |..+.+|+|..+|||+.-......+ .
T Consensus 380 DTn~--~Lre~Tlksm~~La~kL--~~~-~Ln~Ellr~~ar~q~-------d~~~~irtntticlgki~~~l~~~~---R 444 (690)
T KOG1243|consen 380 DTNA--TLREQTLKSMAVLAPKL--SKR-NLNGELLRYLARLQP-------DEHGGIRTNTTICLGKIAPHLAASV---R 444 (690)
T ss_pred cCCH--HHHHHHHHHHHHHHhhh--chh-hhcHHHHHHHHhhCc-------cccCcccccceeeecccccccchhh---h
Confidence 6553 45543333333332111 122 356666665555444 7889999999999999876544433 2
Q ss_pred ccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHH
Q 000700 630 RADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVA 709 (1344)
Q Consensus 630 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~ 709 (1344)
.......+...+.|+-+--|.|.+++|.....-+ +..+ +-..+...+..+.-|....||..+-
T Consensus 445 ~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--------------~~~~---va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 445 KRVLASAFTRALKDPFVPARKAGVLALAATQEYF--------------DQSE---VANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccccchhhhhhhcCCCCCchhhhhHHHhhccccc--------------chhh---hhhhccccccccccCcccchhhHHH
Confidence 2223345666899999999999999998765221 1111 1122334445566799999999998
Q ss_pred HHHHHHHhh
Q 000700 710 VALARFAFG 718 (1344)
Q Consensus 710 ~~ls~~~~~ 718 (1344)
.++..|...
T Consensus 508 ~~i~~fl~k 516 (690)
T KOG1243|consen 508 KAIRQFLEK 516 (690)
T ss_pred HHHHHHHhh
Confidence 888776644
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.083 Score=57.48 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=86.0
Q ss_pred eEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCC
Q 000700 1145 YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVER 1224 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~ 1224 (1344)
.+.+.+.+|.|+-++++..+...+.-.. +.+.......+..+++|+.+|.|.+|............... ...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~---~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG---EES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc---ccc
Confidence 3555678888888887755411111111 11211222346789999999999999887332111111111 122
Q ss_pred eEE-EEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 000700 1225 VVG-ISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASG--SAKQLIKVFSLE 1297 (1344)
Q Consensus 1225 I~s-va~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~-~~Vtsla~spdg~~Lasg--S~Dg~I~Iwd~~ 1297 (1344)
|.+ +..-.+ +.+..+++.||.|+.|++.-. +.+.....|. .++..+.+...+.+++.. |.|..++.|++.
T Consensus 104 i~~~Ip~~~~--~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 104 IDLGIPNGRD--SSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeccccccc--cceeEEeccCCceeeeccccC-ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 322 222222 568899999999999999876 5555555565 556666666666777777 777788888753
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.38 Score=60.27 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=96.2
Q ss_pred hhHHhccCCchhhh-hHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHH
Q 000700 501 YVLKLLQTTTPELR-QILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEAC 579 (1344)
Q Consensus 501 yvlklL~s~~~elr-~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~ 579 (1344)
-...+|.|....+| --+=+|++.|...+- .+ ..|.-.++.....+ .|.|.+.-+-|=+.-+.-+. .
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS------~~Fp~VVKNVaskn--~EVKkLVyvYLlrYAEeqpd---L- 105 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VS------LLFPAVVKNVASKN--IEVKKLVYVYLLRYAEEQPD---L- 105 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHhhccC--HHHHHHHHHHHHHHhhcCCC---c-
Confidence 34578887744433 345789988887753 22 11222333333444 47777655444333222221 1
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhh
Q 000700 580 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 659 (1344)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 659 (1344)
--=-++.+-.-|. ||+|++|+|++=.|+-+- --.|-.-+...+-++..|++|.||+.++.|+-.+
T Consensus 106 -ALLSIntfQk~L~-------DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 106 -ALLSINTFQKALK-------DPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred -eeeeHHHHHhhhc-------CCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 1111345566677 999999999998887332 1112112222334677899999999999999999
Q ss_pred cccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHH
Q 000700 660 LDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 713 (1344)
Q Consensus 660 i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls 713 (1344)
-+-.. ++ ...+...+=.++.|-+|+|--.++.++-
T Consensus 171 YsLd~---------------e~----k~qL~e~I~~LLaD~splVvgsAv~AF~ 205 (968)
T KOG1060|consen 171 YSLDP---------------EQ----KDQLEEVIKKLLADRSPLVVGSAVMAFE 205 (968)
T ss_pred hcCCh---------------hh----HHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 74321 11 1112222233568999999998887764
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.3 Score=61.15 Aligned_cols=166 Identities=20% Similarity=0.254 Sum_probs=110.1
Q ss_pred HHHHhhch--hhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhh-hhhhhc
Q 000700 462 VLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ-VDLVKD 538 (1344)
Q Consensus 462 vLq~LlS~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q-~~l~k~ 538 (1344)
+.++|-|. .-.+.|+.-+---|.-|.-+ --.||-|+|...+...|.|.. ||+. .+++-..-| ..|++
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkL-VyvY--LlrYAEeqpdLALLS- 109 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKL-VYVY--LLRYAEEQPDLALLS- 109 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHH-HHHH--HHHHhhcCCCceeee-
Confidence 45667774 44556766433333333332 236999999999999999864 4444 122211222 12333
Q ss_pred CCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhh
Q 000700 539 GGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLW 618 (1344)
Q Consensus 539 ~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~ 618 (1344)
+++|.+-|.+++ ++.|+|+.=+|+-|= .-.+..-++-..-+... |+.|-||+-+++++-+|.
T Consensus 110 --IntfQk~L~DpN--~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~-------D~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 110 --INTFQKALKDPN--QLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVT-------DPSPYVRKTAAHAIPKLY 171 (968)
T ss_pred --HHHHHhhhcCCc--HHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhc-------CCcHHHHHHHHHhhHHHh
Confidence 689999998877 599999999998872 21222222222223334 899999999999999999
Q ss_pred ccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 619 EDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
.--++-+. .+.+.+-.||+|.+|.|--++|+|+-...
T Consensus 172 sLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 172 SLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred cCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 76555433 34456778999999999999999988765
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.3 Score=53.55 Aligned_cols=238 Identities=18% Similarity=0.164 Sum_probs=152.5
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCC-chhhhhHHHHHHHHHhccChhhhhhh
Q 000700 457 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVDL 535 (1344)
Q Consensus 457 ~~lP~vLq~LlS~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FIwa~il~~~~~~q~~l 535 (1344)
|.+|-+..+|..+.++.-++.+|-+. ....-++.+....+++|-++++|-+. ..+.. .-+-.++.-|+.++.+++.+
T Consensus 372 GlIPkLv~LL~d~~~~~val~iLy~L-S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~rnaqlm 449 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFREVALKILYNL-SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKRNAQLM 449 (708)
T ss_pred CCcHHHHHHhCCCchHHHHHHHHHHh-ccCHhhHHHHhhcchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHHHHHHH
Confidence 78898889888888887777765543 34555677766778899999977543 33332 22333344467777666667
Q ss_pred hhcCCchhhhhhccC---------------CCC------------------chHHHHHHHHHHHHHhcCC-cchhH--HH
Q 000700 536 VKDGGHAYFIRFLDS---------------MEA------------------YPEQRAMAAFVLAVIVDGH-RRGQE--AC 579 (1344)
Q Consensus 536 ~k~~~~~yf~~~L~~---------------~~~------------------~~~~r~~~afiLa~l~~~~-~~gq~--~~ 579 (1344)
++.+|.+-+++.... .+. ..+---+.+=|||.+-+-- +.-.| .+
T Consensus 450 ~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 450 CEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred HhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 777776544432211 010 0011123344555553221 11122 23
Q ss_pred HhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCC--HHHHHHHHHHHh
Q 000700 580 IEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQ--PEVRASAVFSLG 657 (1344)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~s--P~VRaa~v~aL~ 657 (1344)
-+.+++..+..+|... ...+.+..=+++.+|++..+..-|... .+.++...|+.+|+... -|.=--++|++.
T Consensus 530 ~~~~llp~L~~~L~~g-----~~~dDl~LE~Vi~~gtla~d~~~A~lL-~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPG-----ASEDDLLLEVVILLGTLASDPECAPLL-AKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HhCCHHHHHHHHhCCC-----CCChHHHHHHHHHHHHHHCCHHHHHHH-HhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 3568888888888732 234567777889999999875555543 56777778999986554 677777899999
Q ss_pred hhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000700 658 TLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 716 (1344)
Q Consensus 658 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 716 (1344)
+|+--. ++.+.+-.+..+...++.+..|..+.||+-.-.+|..+.
T Consensus 604 ~ll~h~--------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 604 QLLFHE--------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHcCh--------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999221 223334345667788999999999999999988887655
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.5 Score=61.12 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=64.9
Q ss_pred ccccCCCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEE
Q 000700 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1025 ~Wd~~~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrI 1104 (1344)
.|+...+.+|++++|+.+|..++.|-.+|.|.+||...++.++.+..+..+...|-.+.+ ..++..++++...|. +
T Consensus 124 ~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~--t~~nS~llt~D~~Gs--f 199 (1206)
T KOG2079|consen 124 HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGR--TSQNSKLLTSDTGGS--F 199 (1206)
T ss_pred hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEE--eCCCcEEEEccCCCc--e
Confidence 577777899999999999999999999999999999999999999888855555555555 445667888877776 6
Q ss_pred Eec
Q 000700 1105 WKD 1107 (1344)
Q Consensus 1105 Wdl 1107 (1344)
|..
T Consensus 200 ~~l 202 (1206)
T KOG2079|consen 200 WKL 202 (1206)
T ss_pred EEE
Confidence 665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.4 Score=56.03 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CCCeEEEEECC------CeEEEEECCCCceeee--eecCC-CCCCeeEEEEEcCCCCEEEEEECCCe-----EEEEECCC
Q 000700 1142 QSGYLYASGEV------SSIMLWDLEKEQQMVN--PIPSS-SDCSISALTASQVHGGQLAAGFVDGS-----VRLYDVRT 1207 (1344)
Q Consensus 1142 ~~~~Llagg~D------g~I~VWDl~~~~~~v~--~i~~~-~~~~VtsL~~~s~dg~~L~sGs~DGs-----VrIwDlr~ 1207 (1344)
++...++||.| ..+..||.++.+ -.. .+... ....+..+ +|.+.++|+.||. |..||.++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l-----~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL-----DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE-----CCEEEEEeccccccccccEEEecCCC
Confidence 34555666766 357788888776 222 12211 11112222 6888999999974 77888887
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC------cEEEEECCCCc-cceEEEecCCCCeEEEEEcCCCC
Q 000700 1208 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG------DIQFLDIRNHK-DAYLTIDAHRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1208 ~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG------~I~IWDlr~~~-~~v~tl~~h~~~Vtsla~spdg~ 1280 (1344)
.+ ........ ....+.....- +|...++|+.++ ++..||..++. ..+..+........ ++.- ++.
T Consensus 406 ~~--W~~va~m~---~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~ 477 (571)
T KOG4441|consen 406 NK--WTPVAPML---TRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGK 477 (571)
T ss_pred Cc--ccccCCCC---cceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCE
Confidence 65 11111111 12222322222 478888888654 46788887652 11111111111222 2222 567
Q ss_pred EEEEEeCCC-----eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1281 IIASGSAKQ-----LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1281 ~LasgS~Dg-----~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
+.+.||.|+ +|..||.....-..+.. - ....+.+....+ +++..++|+.||.
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m----~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAP-M----TSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEccc-C----ccccccccEEEE--CCEEEEEecccCc
Confidence 888888776 36778865544444332 1 111122222222 5667777777764
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.087 Score=44.74 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh
Q 000700 555 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKL 617 (1344)
Q Consensus 555 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l 617 (1344)
|..|.-++.+|+.+....+... .-...+++..+...|+ |+++.||..+|.+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~-------d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQ-------DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTT-------SSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHhcC
Confidence 4678999999999766655543 3378889999999998 78889999999999975
|
... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.14 E-value=12 Score=43.78 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=69.2
Q ss_pred CCeEEEEEecCCCCCEEEEEEC-CCcEEEEECCC-Cc----c-ceEEEecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEE
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRN-HK----D-AYLTIDAHRGSLSALAVHRHAPIIASGSAKQ-LIKVF 1294 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~-DG~I~IWDlr~-~~----~-~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg-~I~Iw 1294 (1344)
..-++++|+|+ ++.|+.+.. .+.|.-|++.. .. . ....+....+..-.+++..+|.+.+++-.+| .|.+|
T Consensus 163 ~~~NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 163 TIPNGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EecCceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 45678999999 766666654 57888887762 11 1 1222223456666788888898876555444 89999
Q ss_pred eCCCceEEEEeccCCccccccCCCeEEEEEe-cCCCEEEEEE
Q 000700 1295 SLEGEQLGTIRYHHPSFMAQKIGSVNCLTFH-PYQVLLAAGS 1335 (1344)
Q Consensus 1295 d~~g~~l~~l~~~h~~f~~~~~~~V~slafs-pdg~~Lasgs 1335 (1344)
+.+|+.+..++. .. ..+++++|- |+.+.|...+
T Consensus 241 ~pdG~l~~~i~l-P~-------~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPDGKLLGEIKL-PV-------KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCcEEEEEEC-CC-------CCCccceEeCCCcCEEEEEe
Confidence 999999999987 42 568888884 4444444443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.07 E-value=6.6 Score=47.60 Aligned_cols=185 Identities=14% Similarity=0.193 Sum_probs=120.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEE-CCCeEEEEec
Q 000700 1032 KGTKTALLQPFSPIVVAADE---NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKD 1107 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~---dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs-~DG~IrIWdl 1107 (1344)
..+..++++++++.+.++.. ++.+.+.|..+++.+....... .+ ..+++ .+++..+++.. .++.|.+.|.
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~---~P-~~~a~--~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN---TP-TGVAV--DPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC---Cc-ceEEE--CCCCCeEEEEecCCCeEEEEeC
Confidence 36889999999998887765 6889999999998888866554 33 77888 78999777665 7889999996
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeeee-ecCCCCCCeeEEEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNP-IPSSSDCSISALTA 1183 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D---g~I~VWDl~~~~~~v~~-i~~~~~~~VtsL~~ 1183 (1344)
... .... .. ....-.+......+.+++++..+++.... +.+.+.|..++. .... ...... ....+ .
T Consensus 190 ~~~----~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~-~~~~v-~ 259 (381)
T COG3391 190 SGN----SVVR-GS--VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGSG-APRGV-A 259 (381)
T ss_pred CCc----ceec-cc--cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEeccccccC-CCCce-e
Confidence 441 1110 00 00000111111237888999988887543 589999999887 4443 333332 23445 5
Q ss_pred EcCCCCEEEEEEC-CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC
Q 000700 1184 SQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG 1233 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~-DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~ 1233 (1344)
..|+|..+.+... .+.+.+.|..+.. ..........-...+..+++.+.
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~-v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDR-VVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCc-eeeeecccccccccceeccceee
Confidence 6788888887744 4889999998876 44444333222334666666554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=5.9 Score=45.18 Aligned_cols=169 Identities=9% Similarity=0.142 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCC
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~ 1111 (1344)
..++++.|+|+.+.|.+..+...-.||=..+|+.+.++.-... .....+.|+ .++.+.++--.++.+.++.+....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYI--GGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--CChhHeEEe--cCCEEEEEehhcceEEEEEEcCCc
Confidence 3499999999999999888888888887778999998764331 234567773 567777777778888888775522
Q ss_pred CceeEEe---eeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCce-e-eeeecCCC------CCCeeE
Q 000700 1112 DKQKLVT---AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ-M-VNPIPSSS------DCSISA 1180 (1344)
Q Consensus 1112 ~~~~lvs---~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~-~-v~~i~~~~------~~~Vts 1180 (1344)
....... ..........+-.+ ++|.+.++.++++=.-+-+.||.+..... . +.....+. -..|.+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEG----lA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEG----LAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cEEeccceEEeccccCCCCcCcee----eecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 2111111 01111111333344 89999999999997766677766553320 0 11111111 012667
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000700 1181 LTASQVHGGQLAAGFVDGSVRLYDVRTP 1208 (1344)
Q Consensus 1181 L~~~s~dg~~L~sGs~DGsVrIwDlr~~ 1208 (1344)
+.+....+.+++-+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 7666677888999999999888887655
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.99 E-value=2 Score=51.60 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=109.9
Q ss_pred CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCC
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1098 ~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~ 1176 (1344)
.++.|-|+.... .+..+...+++.+....+......-.+...++...|+..| ....++-.|++.++ .+..+..+.+.
T Consensus 435 R~n~IGVFk~~d-e~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv 512 (776)
T COG5167 435 RGNSIGVFKNTD-EGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV 512 (776)
T ss_pred eCCeeeeEeccC-CcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccce-eeeEeecCCcc
Confidence 345677887655 2344555444444333222212122255666667666654 55678888999999 88899887653
Q ss_pred CeeEEEEEcCC-------CCEEEEEECCCeEEEEECCCCCeeeEe--ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc
Q 000700 1177 SISALTASQVH-------GGQLAAGFVDGSVRLYDVRTPDMLVCS--TRPHTQQVERVVGISFQPGLDPAKIVSASQAGD 1247 (1344)
Q Consensus 1177 ~VtsL~~~s~d-------g~~L~sGs~DGsVrIwDlr~~~~~v~~--~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~ 1247 (1344)
|. .+.|. ...-++|-.+..|.-.|.|-....+.. .+...+ .....+..-. ...+++.||..|.
T Consensus 513 -vV---qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss~~tT---esGyIa~as~kGD 584 (776)
T COG5167 513 -VV---QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSSGMTT---ESGYIAAASRKGD 584 (776)
T ss_pred -ee---ecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cccccccccc---cCceEEEecCCCc
Confidence 22 22332 223345656666666687744322222 111111 1222222222 2568999999999
Q ss_pred EEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 000700 1248 IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1248 I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~ 1296 (1344)
|++||--.- .....+.+-...|-.+.++.+|.++.+.+. ..+.+-|+
T Consensus 585 irLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 585 IRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 999996543 344455666778999999999997776654 46777774
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.67 Score=55.87 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=93.5
Q ss_pred CCC-EEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCC-----EEEEEECCCeEEEEeccCCCCcee
Q 000700 1042 FSP-IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS-----LLLVASCNGNIRIWKDYDQKDKQK 1115 (1344)
Q Consensus 1042 dg~-~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~-----~L~tgs~DG~IrIWdl~~~~~~~~ 1115 (1344)
+.+ +|.++.....++--|++.|+.+..++.+. .|+-+.+-|...+. .-+.|-+|..|.-||.+.. +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-~~~k 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-GKNK 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEeccccc-Ccce
Confidence 444 34456667778888999999999999888 36666663222222 2345666778888998752 2212
Q ss_pred EEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEE
Q 000700 1116 LVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1195 (1344)
Q Consensus 1116 lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs 1195 (1344)
+. ..++|... +...+.+.-...+|++++|+.+|.||+||.-... ....+++- +.+|+.+ -...+|+.+++.|
T Consensus 419 l~----~~q~kqy~-~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~-AKTAlPgL-G~~I~hV-dvtadGKwil~Tc 490 (644)
T KOG2395|consen 419 LA----VVQSKQYS-TKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRR-AKTALPGL-GDAIKHV-DVTADGKWILATC 490 (644)
T ss_pred ee----eeeccccc-cccccceeeecCCceEEEeecCCcEEeehhhhhh-hhhccccc-CCceeeE-EeeccCcEEEEec
Confidence 21 12222211 1111222223468999999999999999973333 33445554 4459999 5567888887665
Q ss_pred CCCeEEEEECC
Q 000700 1196 VDGSVRLYDVR 1206 (1344)
Q Consensus 1196 ~DGsVrIwDlr 1206 (1344)
+..+.+.|..
T Consensus 491 -~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 -KTYLLLIDTL 500 (644)
T ss_pred -ccEEEEEEEe
Confidence 5567777665
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.4 Score=61.37 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=105.5
Q ss_pred hhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHh
Q 000700 512 ELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKH 591 (1344)
Q Consensus 512 elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~ 591 (1344)
+-+.-+=.|+|.+...+. -+ .+++-.++.....+ .|+|.++=+=|=..-+..|+-+..| .+.+.+=
T Consensus 35 ~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd--~ElKrL~ylYl~~yak~~P~~~lLa-----vNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRD--VELKRLLYLYLERYAKLKPELALLA-----VNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcC--HHHHHHHHHHHHHHhccCHHHHHHH-----HHHHHhh
Confidence 344445677777666543 11 12333455555333 6999999888766655556322222 2333344
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCC
Q 000700 592 LQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGV 671 (1344)
Q Consensus 592 l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~ 671 (1344)
|+ |++|++|..++=.|+.+=.. .+-..+...+-.+++|++|.||+.|++|+..+-....
T Consensus 101 l~-------d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------- 159 (757)
T COG5096 101 LQ-------DPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------- 159 (757)
T ss_pred cc-------CCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-------
Confidence 55 89999999998888866432 2334455578899999999999999999999974321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 672 EGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 672 ~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
.+--|.+....+-.++.|.+|.|-+.++.++.-+...
T Consensus 160 ----------~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 ----------DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----------hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 1222333444555677899999999999988655433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.2 Score=56.60 Aligned_cols=189 Identities=10% Similarity=0.078 Sum_probs=94.0
Q ss_pred CCCEEEEEECC------CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC-----eEEEEeccCC
Q 000700 1042 FSPIVVAADEN------ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG-----NIRIWKDYDQ 1110 (1344)
Q Consensus 1042 dg~~Latgs~d------g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG-----~IrIWdl~~~ 1110 (1344)
++...++||.+ ..+..||..+++....-.-.. +.... +++. -++.+.+.||.+| .+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~-~R~~~-~~~~---~~g~IYviGG~~~~~~~~sve~Ydp~~- 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK-NRCRF-SLAV---IDDTIYAIGGQNGTNVERTIECYTMGD- 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-hhhce-eEEE---ECCEEEEECCcCCCCCCceEEEEECCC-
Confidence 55666777643 346778887664322111111 11122 2232 2677778888764 377788765
Q ss_pred CCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC-----------------------CeEEEEECCCCce-e
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-----------------------SSIMLWDLEKEQQ-M 1166 (1344)
Q Consensus 1111 ~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D-----------------------g~I~VWDl~~~~~-~ 1166 (1344)
+.. ..+.....+....+. +.. ++...+.||.+ ..+..||..+.+. .
T Consensus 377 -~~W------~~~~~mp~~r~~~~~-~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 377 -DKW------KMLPDMPIALSSYGM-CVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred -CeE------EECCCCCcccccccE-EEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 222 222222222222111 222 34444555543 2477888887650 1
Q ss_pred eeeecCCCCCCeeEEEEEcCCCCEEEEEECCC------eEEEEECCC-CCeeeEeecCCCCCCCCeEEEEEecCCCCCEE
Q 000700 1167 VNPIPSSSDCSISALTASQVHGGQLAAGFVDG------SVRLYDVRT-PDMLVCSTRPHTQQVERVVGISFQPGLDPAKI 1239 (1344)
Q Consensus 1167 v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DG------sVrIwDlr~-~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~L 1239 (1344)
+..+...... .++... ++.+.+.|+.++ .|..||..+ .+ ................+.+ ++.+.
T Consensus 447 v~~m~~~r~~--~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~----~~~iy 516 (557)
T PHA02713 447 LPNFWTGTIR--PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILH----DNTIM 516 (557)
T ss_pred cCCCCccccc--CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCcccccceeEEE----CCEEE
Confidence 2222221111 122122 577777777542 467899887 33 2222122211222222222 37899
Q ss_pred EEEECCC--cEEEEECCCC
Q 000700 1240 VSASQAG--DIQFLDIRNH 1256 (1344)
Q Consensus 1240 asgs~DG--~I~IWDlr~~ 1256 (1344)
++|+.|| .+..||..+.
T Consensus 517 v~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEeeecceeehhhcCcccc
Confidence 9999888 6777887765
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.75 Score=57.22 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=76.1
Q ss_pred HHHHHhccChhhhhhhhhcCCchhhhhh----ccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCC
Q 000700 520 IWTKILALDKSCQVDLVKDGGHAYFIRF----LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGS 595 (1344)
Q Consensus 520 Iwa~il~~~~~~q~~l~k~~~~~yf~~~----L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~ 595 (1344)
.+|+|+...+ |.+.=. ....+++.| +.+++. --|--+|-+|+.+.++...- -.-+..++.+.+...|.
T Consensus 65 fla~fv~sl~--q~d~e~-DlV~~~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~-- 136 (892)
T KOG2025|consen 65 FLARFVESLP--QLDKEE-DLVAGTFYHLLRGTESKDK--KVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK-- 136 (892)
T ss_pred HHHHHHHhhh--ccCchh-hHHHHHHHHHHhcccCcch--hHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh--
Confidence 3456666544 322221 134444444 445554 56778889999998744331 11234455556666777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhc-cCCCHHHHHHHHHHHh
Q 000700 596 MPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL-SEPQPEVRASAVFSLG 657 (1344)
Q Consensus 596 ~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll-~D~sP~VRaa~v~aL~ 657 (1344)
|..|-||-=+++||++|-++..+. +..+...+..++ +|||||||.+++..+.
T Consensus 137 -----Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 -----DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 889999999999999999653331 233444555555 8999999999877654
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.23 Score=64.00 Aligned_cols=108 Identities=13% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-CceE
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQL 1301 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~-g~~l 1301 (1344)
..+.+.+.. +..++.|+..|.|-..|.+..-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+. ++.+
T Consensus 90 ~~v~s~a~~----~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 90 AGVISSAIV----VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred cceeeeeee----eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 344444443 55799999999999999886412222222346799999999999999999999999999965 5666
Q ss_pred EEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCe
Q 000700 1302 GTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADAC 1339 (1344)
Q Consensus 1302 ~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~ 1339 (1344)
+.+.. |. .....|-.+.+..++..+.++...|.
T Consensus 166 ~~i~e-~~----ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 KVITE-HG----APVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eeeee-cC----CccceEEEEEEeCCCcEEEEccCCCc
Confidence 66665 43 11123333444445556777766664
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.71 E-value=14 Score=42.02 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC--cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg--~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
...-...+.|..+|.++-+.+.-| .|+.+|+++|+.+....-... ---..++.. ++.+..-.-.+|...+||.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~---~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL---GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE---TTEEEEEESSSSEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE---CCEEEEEEecCCeEEEEcc
Confidence 334577888888888888877666 789999999988776654330 122334442 3445555567899999998
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCC----CCeeEEEE
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSD----CSISALTA 1183 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~----~~VtsL~~ 1183 (1344)
.+ .+.+..+. +.+ .-+. ++ .++..|+.+.....|+++|..+-+ .+..+....+ ..+.-+.+
T Consensus 118 ~t----l~~~~~~~-y~~---EGWG----Lt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 118 NT----LKKIGTFP-YPG---EGWG----LT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp TT----TEEEEEEE--SS---S--E----EE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEE
T ss_pred cc----ceEEEEEe-cCC---cceE----EE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEE
Confidence 65 23332221 222 2233 33 368889988888899999998877 6665553211 12555655
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCeeeEeecC---------CC---CCCCCeEEEEEecCCCCCEEEEE
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---------HT---QQVERVVGISFQPGLDPAKIVSA 1242 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~---------~~---~h~~~I~sva~sp~~~g~~Lasg 1242 (1344)
. +|.+.+=.-....|...|..+++ +...+.. .. ....-.+.|++.|. .+++++||
T Consensus 183 i--~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~-~~~l~vTG 249 (264)
T PF05096_consen 183 I--NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE-TDRLFVTG 249 (264)
T ss_dssp E--TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT-TTEEEEEE
T ss_pred E--cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCC-CCEEEEEe
Confidence 5 45555555556667777888876 3333210 00 11356889999998 56666666
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.67 E-value=8.5 Score=47.26 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=100.2
Q ss_pred CeEEEEEEeeCCCCEEEEEE---CC-CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE-CC
Q 000700 1078 GISKLCLVNELDVSLLLVAS---CN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EV 1152 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~L~tgs---~D-G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg-~D 1152 (1344)
.+..-+| ++++..++-.+ .. ..+.++++.. +....+. ...++.. .-.|+|++..++.+. .|
T Consensus 194 ~~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~---~~~g~~~-------~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 194 LILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVIL---NFNGNNG-------APAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ceecccc--CcCCCceEEEEEecCCCceEEEEeccC--Cccceee---ccCCccC-------CccCCCCCCEEEEEECCC
Confidence 4444455 45555443332 12 3588888876 3333331 1222221 267899999888774 45
Q ss_pred Ce--EEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC-CCe--EEEEECCCCCeeeEeecCCCCCCCCeEE
Q 000700 1153 SS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGS--VRLYDVRTPDMLVCSTRPHTQQVERVVG 1227 (1344)
Q Consensus 1153 g~--I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~-DGs--VrIwDlr~~~~~v~~~~~~~~h~~~I~s 1227 (1344)
|. |.++|+.... ..+ +... .. +..--.++|+|+.++..+. .|. |.++|...... .+..... ..-..
T Consensus 260 g~~~iy~~dl~~~~-~~~-Lt~~-~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~----~~~~~ 330 (425)
T COG0823 260 GSPDIYLMDLDGKN-LPR-LTNG-FG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG----GGNSN 330 (425)
T ss_pred CCccEEEEcCCCCc-cee-cccC-Cc-cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC----CCCcC
Confidence 54 6777887776 333 3322 21 3334467899998887654 444 56666666552 2221111 11227
Q ss_pred EEEecCCCCCEEEEEEC-CCc--EEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEE
Q 000700 1228 ISFQPGLDPAKIVSASQ-AGD--IQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASG 1285 (1344)
Q Consensus 1228 va~sp~~~g~~Lasgs~-DG~--I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Lasg 1285 (1344)
-.|+|+ |++|+..+. +|. |.+.|+.++.. ++.+. +......-++.+++..+...
T Consensus 331 p~~Spd--G~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 331 PVWSPD--GDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ccCCCC--CCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEe
Confidence 788999 888887664 344 77777776632 33332 23334455677787765543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.58 Score=61.34 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=111.2
Q ss_pred chhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhh--hcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcch
Q 000700 498 IFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV--KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRG 575 (1344)
Q Consensus 498 ifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~--k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~g 575 (1344)
+|+++-++|||+.--.|.-.+--++.|-.. |+.-.. =+..+...++.|++++ |.-|..||++++++-.|+...
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcHH
Confidence 588999999998655554444444444433 332121 2556778888888877 599999999999999998775
Q ss_pred hHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh-hHhhhccCCCHHHHHHHHH
Q 000700 576 QEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA-IYVPLLSEPQPEVRASAVF 654 (1344)
Q Consensus 576 q~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~-~l~~ll~D~sP~VRaa~v~ 654 (1344)
=.--....+...++..+.+ ..+|.|.+-++-||=.|.++.+...-..+=+.+.+ ++..|++.+.|.||..+|.
T Consensus 424 iqk~~~e~l~~aL~~~ld~------~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 424 IQKKHHERLPPALIALLDS------TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHhccHHHHHHhcc------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 3333455555556666663 56899999999999999888766555555455555 6777889999999999999
Q ss_pred HHhhhccc
Q 000700 655 SLGTLLDI 662 (1344)
Q Consensus 655 aL~~~i~~ 662 (1344)
|+|.....
T Consensus 498 aIasvA~A 505 (1075)
T KOG2171|consen 498 AIASVADA 505 (1075)
T ss_pred HHHHHHHH
Confidence 99988744
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.099 Score=38.98 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=24.6
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000700 584 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 619 (1344)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~ 619 (1344)
++..+++.++ |++|+||.+++.|||.+.+
T Consensus 1 llp~l~~~l~-------D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLN-------DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--------SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcC-------CCCHHHHHHHHHHHHHHHh
Confidence 3567788898 9999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.13 Score=50.97 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred hhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000700 542 AYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620 (1344)
Q Consensus 542 ~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 620 (1344)
+..+++|..++ .+..-+.+|.=|+.+++.||.|+..+-+.++-..+..+++ +++|+||--+++|+.+|+..
T Consensus 46 k~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~-------h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 46 KKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN-------HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS--------SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHh
Confidence 34566665444 3788899999999999999999999999999999999999 89999999999999998753
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.61 Score=51.99 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhch-HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH-HHHhh---h
Q 000700 555 PEQRAMAAFVLAVIVDGHRRGQEACIEAGL-IHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE-AQTIG---R 629 (1344)
Q Consensus 555 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~-~~~~~---~ 629 (1344)
.-.|+-+.-+|-.+|+..+. ...+ ...+...++ +.+|.+|.-++-+|..++..... ..... .
T Consensus 108 ~~i~~~a~~~L~~i~~~~~~------~~~~~~~~l~~~~~-------~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCSY------SPKILLEILSQGLK-------SKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHHHHHHHHHCCc------HHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 45677777788888866551 2233 666666777 88999999999999999988761 11111 1
Q ss_pred ccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 630 RADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 630 ~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
-..+...+..+++|+.|+||+++--++..|.
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 1345667889999999999999988888886
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.74 Score=51.33 Aligned_cols=185 Identities=22% Similarity=0.212 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhc
Q 000700 469 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFL 548 (1344)
Q Consensus 469 ~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L 548 (1344)
++.|.|||.-|-.-++.+. .-++.|-.-+-...+|.=++|.+... |+. .-.+..+..|
T Consensus 19 l~~r~rALf~Lr~l~~~~~-----------i~~i~ka~~d~s~llkhe~ay~LgQ~------~~~-----~Av~~l~~vl 76 (289)
T KOG0567|consen 19 LQNRFRALFNLRNLLGPAA-----------IKAITKAFIDDSALLKHELAYVLGQM------QDE-----DAVPVLVEVL 76 (289)
T ss_pred HHHHHHHHHhhhccCChHH-----------HHHHHHhcccchhhhccchhhhhhhh------ccc-----hhhHHHHHHh
Confidence 5689999987666664433 34555555554556777778887322 222 2344566677
Q ss_pred cCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccc-------
Q 000700 549 DSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF------- 621 (1344)
Q Consensus 549 ~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~------- 621 (1344)
.+.+..|-.|-=++++|+.+- .....+++-++.+ ||..+||--|-++|.++=...
T Consensus 77 ~desq~pmvRhEAaealga~~-----------~~~~~~~l~k~~~-------dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 77 LDESQEPMVRHEAAEALGAIG-----------DPESLEILTKYIK-------DPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred cccccchHHHHHHHHHHHhhc-----------chhhHHHHHHHhc-------CCccccchHHHHHHHHHHHhhccccccc
Confidence 766666778888999998885 3344556666665 777777777777777663110
Q ss_pred ---------------------------------hHHHH-hhhccC----chhhHhhhccCCCHHHHHHHHHHHhhhcccC
Q 000700 622 ---------------------------------TEAQT-IGRRAD----APAIYVPLLSEPQPEVRASAVFSLGTLLDIG 663 (1344)
Q Consensus 622 ---------------------------------~~~~~-~~~~~~----~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 663 (1344)
..-+. +.++.. +...|..-+.|+|++.|-++.|.||++-+.-
T Consensus 139 ~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ 218 (289)
T KOG0567|consen 139 SSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA 218 (289)
T ss_pred cCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh
Confidence 00000 111111 1225666778889999999999998886321
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHH
Q 000700 664 FDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFA 716 (1344)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~ 716 (1344)
.+ ..+...|.. .-..||||.|.+-+|..+.
T Consensus 219 ------------------ai---~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 219 ------------------AI---PSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred ------------------hh---HHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 00 111122221 2346999999999998654
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.27 Score=47.47 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh
Q 000700 557 QRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 627 (1344)
Q Consensus 557 ~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~ 627 (1344)
.|.-+.=+||.+|-+.+..|....+.+.+..++..-.-+ +.+|.+|.|+++|+=.|++++++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-----~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-----DHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-----cccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 456677789999999999999998888888877764421 779999999999999999999999874
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.42 Score=58.06 Aligned_cols=122 Identities=24% Similarity=0.206 Sum_probs=82.6
Q ss_pred chhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 000700 541 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620 (1344)
Q Consensus 541 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 620 (1344)
...|+..|...+. ++.+..+++.|... . .....+.++..|. ++++.||..++-+||.+-..
T Consensus 56 ~~~L~~aL~~d~~-~ev~~~aa~al~~~---~--------~~~~~~~L~~~L~-------d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 56 TELLVSALAEADE-PGRVACAALALLAQ---E--------DALDLRSVLAVLQ-------AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHHHhhCCC-hhHHHHHHHHHhcc---C--------ChHHHHHHHHHhc-------CCCHHHHHHHHHHHhcCCch
Confidence 4556666643332 46666665555221 0 1123788888888 77888999999999954322
Q ss_pred chHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCC
Q 000700 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDG 700 (1344)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~ 700 (1344)
.+...|+.+|+|..|.||++++-+++..-.. -...++..+.|.
T Consensus 117 -----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~--------------------------~~~~L~~~L~d~ 159 (410)
T TIGR02270 117 -----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD--------------------------PGPALEAALTHE 159 (410)
T ss_pred -----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------------------------hHHHHHHHhcCC
Confidence 2234688999999999999998888764300 012455566799
Q ss_pred ChhhHHHHHHHHHHHHhh
Q 000700 701 SPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 701 sp~VR~e~~~~ls~~~~~ 718 (1344)
+|.||++++.+++.+-..
T Consensus 160 d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 160 DALVRAAALRALGELPRR 177 (410)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999999876543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.2 Score=54.01 Aligned_cols=169 Identities=14% Similarity=0.263 Sum_probs=107.8
Q ss_pred CCHHHHHHHHhcCchhhhHHhccCCchh-hhhHHHHHHHHHhccC------hhhhhhhhhcCCchhhhhhccCC-CCchH
Q 000700 485 MGPWAVDLALSVGIFPYVLKLLQTTTPE-LRQILVFIWTKILALD------KSCQVDLVKDGGHAYFIRFLDSM-EAYPE 556 (1344)
Q Consensus 485 ~~~wAv~lal~~gifpyvlklL~s~~~e-lr~~~~FIwa~il~~~------~~~q~~l~k~~~~~yf~~~L~~~-~~~~~ 556 (1344)
..+-++......+++|-++.+++....| .=.+++.|+--++... ..+...++..++.+ .+..|+.. =..++
T Consensus 216 F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~Ded 294 (429)
T cd00256 216 FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDED 294 (429)
T ss_pred ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHH
Confidence 3334555555678999999999876443 3346777777777642 22333444334333 33444321 01123
Q ss_pred HHHHHHHHHHHHhcCC---------------------cch-----------hHHHHhhchHHHHHHhhcCCCCCCCCCCH
Q 000700 557 QRAMAAFVLAVIVDGH---------------------RRG-----------QEACIEAGLIHVCLKHLQGSMPNDAQTEP 604 (1344)
Q Consensus 557 ~r~~~afiLa~l~~~~---------------------~~g-----------q~~~~~~~~~~~~~~~l~~~~~~~~~~~p 604 (1344)
+.....++-..+=+.+ |.. +..--+-.++.++.++|.. ..+|
T Consensus 295 L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~------s~d~ 368 (429)
T cd00256 295 LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET------SVDP 368 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc------CCCc
Confidence 3333333332221111 111 1111123455677888853 5578
Q ss_pred HHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 605 LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 605 ~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
..-+-+|.=+|.|+..+|++|.+.-+.++-+.+..|++++.|+||.+|+.|++.++
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88899999999999999999999888889899999999999999999999999987
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=42 Score=44.02 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=120.5
Q ss_pred CeEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC------Ce
Q 000700 1033 GTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN------GN 1101 (1344)
Q Consensus 1033 ~I~~l~fspdg~~Latgs-----~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D------G~ 1101 (1344)
.+..+.++||+++|+.+. +...|++.|+.+|+.+...-... . ..++| .+|++.|+.+..+ ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~----~-~~~~w--~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV----E-PSFVW--ANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc----c-eEEEE--eeCCCEEEEEEecCCCCCCCE
Confidence 477888999999888754 33457888988875432211111 2 45788 5677655554332 25
Q ss_pred EEEEeccCCCCceeEEeeeecccCCCCCccccceEEEE-ecCCCeEEEEE---CCCeEEEEECCC--CceeeeeecCCCC
Q 000700 1102 IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDW-QQQSGYLYASG---EVSSIMLWDLEK--EQQMVNPIPSSSD 1175 (1344)
Q Consensus 1102 IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~w-s~~~~~Llagg---~Dg~I~VWDl~~--~~~~v~~i~~~~~ 1175 (1344)
|..+++.+......++ +.+...... + ..+ +.++..+++.+ .++.+.+++... +. ....+....+
T Consensus 201 v~~h~lgt~~~~d~lv-----~~e~~~~~~---~-~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 270 (686)
T PRK10115 201 VWRHTIGTPASQDELV-----YEEKDDTFY---V-SLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRKD 270 (686)
T ss_pred EEEEECCCChhHCeEE-----EeeCCCCEE---E-EEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCCC
Confidence 6667776532233333 222222221 1 233 33677766553 356789998532 32 2222222222
Q ss_pred CCeeEEEEEcCCCCEEEEEECC----CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 000700 1176 CSISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1176 ~~VtsL~~~s~dg~~L~sGs~D----GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IW 1251 (1344)
. ...+ .... ..|..-+.. ..|...++.........+ .. .....|..+.+. . ..++++...+|.-+++
T Consensus 271 ~-~~~~--~~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~-~~~~~i~~~~~~-~--~~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 271 H-EYSL--DHYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PP-RENIMLEGFTLF-T--DWLVVEERQRGLTSLR 341 (686)
T ss_pred C-EEEE--EeCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEE-CC-CCCCEEEEEEEE-C--CEEEEEEEeCCEEEEE
Confidence 2 3444 1222 333333322 234444444221111122 22 112367778876 3 5667777778876665
Q ss_pred ECCCCccceEEEe-cCCCCeEEEEEc--CCCC-EEEEEeC---CCeEEEEeCCCceEEEEe
Q 000700 1252 DIRNHKDAYLTID-AHRGSLSALAVH--RHAP-IIASGSA---KQLIKVFSLEGEQLGTIR 1305 (1344)
Q Consensus 1252 Dlr~~~~~v~tl~-~h~~~Vtsla~s--pdg~-~LasgS~---Dg~I~Iwd~~g~~l~~l~ 1305 (1344)
-+...+..+..+. .....+..+.++ +++. ++++.++ -+.+..+|..+.....+.
T Consensus 342 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 342 QINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred EEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 5443222344433 222233334444 3333 4444332 366778886544444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=25 Score=41.08 Aligned_cols=279 Identities=14% Similarity=0.095 Sum_probs=122.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-cEEEEee--CCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEec
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEED-TLLNSFD--NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1031 ~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg-~~l~~~~--~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl 1107 (1344)
...+..|.|.....-.++|. .+. |+...+| +.=.... ...+..-...++.|. +...+++ +..|.| +..
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~iv-G~~g~l--l~T 86 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIV-GEPGLL--LHT 86 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEE-EETTEE--EEE
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEec---CCceEEE-cCCceE--EEe
Confidence 46799999996555666665 553 4444433 2211111 111111346677772 2334444 455543 333
Q ss_pred cCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCC
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~d 1187 (1344)
.+.....+.+..-..+.+ .... +... ..+...+++..|.|..= .+.++ .-+.+.......+..+ ...++
T Consensus 87 ~DgG~tW~~v~l~~~lpg---s~~~----i~~l-~~~~~~l~~~~G~iy~T-~DgG~-tW~~~~~~~~gs~~~~-~r~~d 155 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPG---SPFG----ITAL-GDGSAELAGDRGAIYRT-TDGGK-TWQAVVSETSGSINDI-TRSSD 155 (302)
T ss_dssp SSTTSS-EE----TT-SS----EEE----EEEE-ETTEEEEEETT--EEEE-SSTTS-SEEEEE-S----EEEE-EE-TT
T ss_pred cCCCCCcEEeecCCCCCC---CeeE----EEEc-CCCcEEEEcCCCcEEEe-CCCCC-CeeEcccCCcceeEeE-EECCC
Confidence 222222222200001111 1111 2222 23455555666654432 22333 2222222223347777 56688
Q ss_pred CCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEE----E
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT----I 1263 (1344)
Q Consensus 1188 g~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~t----l 1263 (1344)
|.+++++.......-||--... ...... .....|.++.|.|+ +...+.+ ..|.|++=+.....+.... +
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~--w~~~~r--~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTT--WQPHNR--NSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS---EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TTEEEEE---B-TT
T ss_pred CcEEEEECcccEEEEecCCCcc--ceEEcc--CccceehhceecCC--CCEEEEe-CCcEEEEccCCCCccccccccCCc
Confidence 8888877655555677754322 111111 12378999999998 7766644 8888888872221111111 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEECCCeEEEc
Q 000700 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1264 ~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
....-.+..+++.+++.+.|+|+. |.+.+=.-.|+.-...+. -. .-.+.+..+.|....+-++.| .+|.|--|
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~S~DgGktW~~~~~-~~----~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGS-GTLLVSTDGGKTWQKDRV-GE----NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEEST-T-EEEESSTTSS-EE-GG-GT----TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccCceeeEEEEecCCCCEEEEeCC-ccEEEeCCCCccceECcc-cc----CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 112234789999999888887764 444433334554444332 11 112568889998776666655 68887655
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.8 Score=44.61 Aligned_cols=234 Identities=16% Similarity=0.126 Sum_probs=142.2
Q ss_pred CCCchhhHHHHhhc---hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhh
Q 000700 455 PPEQLPIVLQVLLS---QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSC 531 (1344)
Q Consensus 455 ~p~~lP~vLq~LlS---~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~ 531 (1344)
-|++|.-++.+|.+ +.-+-+|+..+++. ..-|-+....-..|+.+-+.++|.++.++.|.-++-.+.- ++.....
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N-ls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN-LSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh-cCCChhh
Confidence 35778888888885 33566888888885 3456777777789999999999999998888655444443 3444333
Q ss_pred hhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHH
Q 000700 532 QVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLC 611 (1344)
Q Consensus 532 q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~ 611 (1344)
|. -++..+-..|-..+..+-..+.|.+=+- .|..+.-. ...|.. + .+.+..++.+|. ..+..+|-=+.
T Consensus 88 ~~-~Ik~~i~~Vc~~~~s~~lns~~Q~agLr-lL~nLtv~-~~~~~~-l-~~~i~~ll~LL~-------~G~~~~k~~vL 155 (254)
T PF04826_consen 88 QE-QIKMYIPQVCEETVSSPLNSEVQLAGLR-LLTNLTVT-NDYHHM-L-ANYIPDLLSLLS-------SGSEKTKVQVL 155 (254)
T ss_pred HH-HHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHccCCC-cchhhh-H-HhhHHHHHHHHH-------cCChHHHHHHH
Confidence 32 3444333344444443333345533222 22222111 222333 2 234556778888 66777887777
Q ss_pred HHHHHhhccchHHHHhhhccCchhhHhhhccCC-CHHHHHHHHHHHhhhccc---CcCCCCCCCCCCCCCChHH--H-HH
Q 000700 612 LCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEP-QPEVRASAVFSLGTLLDI---GFDSCRDGVEGDEECDDDE--K-IR 684 (1344)
Q Consensus 612 l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~-sP~VRaa~v~aL~~~i~~---~~~~~~~~~~~~~~~~~~~--~-~~ 684 (1344)
-+|..|=.+...++.. +...+...++.+++.. .-++.-.++..+..+-.. ....+. ..++..+. . .+
T Consensus 156 k~L~nLS~np~~~~~L-l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~-----~~~~~~~~L~~~~~ 229 (254)
T PF04826_consen 156 KVLVNLSENPDMTREL-LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFV-----QDDFSEDSLFSLFG 229 (254)
T ss_pred HHHHHhccCHHHHHHH-HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceec-----cccCCchhHHHHHc
Confidence 7888888777666654 4455777888888654 677777777777776422 111111 12222221 2 22
Q ss_pred HHHHHHHHHHhhccCCChhhHHHH
Q 000700 685 AEISIIRSLLTVVSDGSPLVRAEV 708 (1344)
Q Consensus 685 ~e~~~~~~ll~~~~D~sp~VR~e~ 708 (1344)
.+..++.+|..+...+.|+||..+
T Consensus 230 e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 230 ESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cHHHHHHHHHHHHcCCCHHHhhhc
Confidence 344478889999999999999865
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.55 E-value=12 Score=44.01 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=84.7
Q ss_pred EEecCCCeEEEEE-CCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeec
Q 000700 1138 DWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR 1216 (1344)
Q Consensus 1138 ~ws~~~~~Llagg-~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~ 1216 (1344)
.|.++.+.|+... ..+.|.-||..++. ...+..... +.++...+..+.+ ++ +.. .+.++|...+........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~--~~~~~~p~~--~~~~~~~d~~g~L-v~-~~~-g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK--KRVFPSPGG--FSSGALIDAGGRL-IA-CEH-GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc--eEEEECCCC--cccceeecCCCeE-EE-Ecc-ccEEEeccCCceeEEecc
Confidence 4666777666664 67889999998775 333333222 4555445444433 33 333 356667654442111111
Q ss_pred CCCC-CCCCeEEEEEecCCCCCEEEEEEC-----------CCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEE
Q 000700 1217 PHTQ-QVERVVGISFQPGLDPAKIVSASQ-----------AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIAS 1284 (1344)
Q Consensus 1217 ~~~~-h~~~I~sva~sp~~~g~~Lasgs~-----------DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~Las 1284 (1344)
...+ .....+.+.+.|+ |.+.++... -|.|+.+|. .+ ..++.+..+-..-++|+|||+++.|..
T Consensus 104 ~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECCCCCEEEE
Confidence 1111 1245667888888 776665444 133444443 33 455555555555678999999986666
Q ss_pred E-eCCCeEEEEeCC
Q 000700 1285 G-SAKQLIKVFSLE 1297 (1344)
Q Consensus 1285 g-S~Dg~I~Iwd~~ 1297 (1344)
. +..+.|.-|++.
T Consensus 180 aDT~~~~i~r~~~d 193 (307)
T COG3386 180 ADTPANRIHRYDLD 193 (307)
T ss_pred EeCCCCeEEEEecC
Confidence 5 445778888754
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=5.5 Score=45.03 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=87.2
Q ss_pred EEecCCCeEEEEEC-----CCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEEC----------------
Q 000700 1138 DWQQQSGYLYASGE-----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV---------------- 1196 (1344)
Q Consensus 1138 ~ws~~~~~Llagg~-----Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~---------------- 1196 (1344)
.|++++.+|+++-+ -|.|-|||.+.+-+.+-.+.++.-. -..+ .+..||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG-pHev-~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG-PHEV-TLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC-ccee-EEecCCcEEEEeCCceecccccCccccchh
Confidence 57899999999843 3789999998665467777776544 4555 45678988887532
Q ss_pred --CCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCc-----EEEEECCCCccceEEEecC---
Q 000700 1197 --DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGD-----IQFLDIRNHKDAYLTIDAH--- 1266 (1344)
Q Consensus 1197 --DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~-----I~IWDlr~~~~~v~tl~~h--- 1266 (1344)
.-++.+.|..+++.+.+..-.-..+.-.|..++..++ |..++.+-..|. -.+=-.+.+ +++.-+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d--gtvwfgcQy~G~~~d~ppLvg~~~~g-~~l~~~~~pee~ 274 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD--GTVWFGCQYRGPRNDLPPLVGHFRKG-EPLEFLDLPEEQ 274 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC--CcEEEEEEeeCCCccCCcceeeccCC-CcCcccCCCHHH
Confidence 1122333333333111110010123455777777766 655544432221 000011111 333333321
Q ss_pred ----CCCeEEEEEcCCCCEEEEEeCC-CeEEEEeC-CCceEEE
Q 000700 1267 ----RGSLSALAVHRHAPIIASGSAK-QLIKVFSL-EGEQLGT 1303 (1344)
Q Consensus 1267 ----~~~Vtsla~spdg~~LasgS~D-g~I~Iwd~-~g~~l~~ 1303 (1344)
...|-+++.+.+..+++..+-. +...+||. +|..+..
T Consensus 275 ~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 275 TAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 2357788888766666655544 45678994 5655443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.9 Score=51.15 Aligned_cols=185 Identities=24% Similarity=0.277 Sum_probs=122.8
Q ss_pred CCchhhHHHHhhchhhHH--HHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhh
Q 000700 456 PEQLPIVLQVLLSQCHRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 533 (1344)
Q Consensus 456 p~~lP~vLq~LlS~~~rl--ral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~ 533 (1344)
+...+.++++|.+....+ +|...|+.+= ..-.+|...++|.+.....|..+++.+..+- +
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~----- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--D----- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--C-----
Confidence 467888999888864444 4443322211 1234678888999888888888888442221 1
Q ss_pred hhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCC----------
Q 000700 534 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTE---------- 603 (1344)
Q Consensus 534 ~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~---------- 603 (1344)
+..+..++..|.. +...-.|.-++..|+.+- ....+.-++..++ ++.
T Consensus 104 ----~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~-----------~~~a~~~l~~~l~-------~~~~~~a~~~~~~ 160 (335)
T COG1413 104 ----PEAVPPLVELLEN-DENEGVRAAAARALGKLG-----------DERALDPLLEALQ-------DEDSGSAAAALDA 160 (335)
T ss_pred ----hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcC-----------chhhhHHHHHHhc-------cchhhhhhhhccc
Confidence 2234556666664 222578999999998883 2233556666666 322
Q ss_pred H--HHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHH
Q 000700 604 P--LFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDE 681 (1344)
Q Consensus 604 p--~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~ 681 (1344)
+ .+|..++-.|+.+-.. .....+..++.|....||.+++.+|+.+.+. .
T Consensus 161 ~~~~~r~~a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~-----------------~- 211 (335)
T COG1413 161 ALLDVRAAAAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSE-----------------N- 211 (335)
T ss_pred hHHHHHHHHHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcc-----------------h-
Confidence 2 4777777777766532 2234688899999999999999999998722 0
Q ss_pred HHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHH
Q 000700 682 KIRAEISIIRSLLTVVSDGSPLVRAEVAVALARF 715 (1344)
Q Consensus 682 ~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~ 715 (1344)
..+...+.....|.+..||...+..++..
T Consensus 212 -----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 212 -----VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred -----hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 23345566778899999999999888763
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.5 Score=55.55 Aligned_cols=189 Identities=17% Similarity=0.185 Sum_probs=126.8
Q ss_pred HHHHhhc--hhhHHHHHHHHHHHhcCCHH-HHHH-HH--hcCchhhhHHhccC-------CchhhhhHHHHHHHHHhccC
Q 000700 462 VLQVLLS--QCHRFRALVLLGRFLDMGPW-AVDL-AL--SVGIFPYVLKLLQT-------TTPELRQILVFIWTKILALD 528 (1344)
Q Consensus 462 vLq~LlS--~~~rlral~ll~~fld~~~w-Av~l-al--~~gifpyvlklL~s-------~~~elr~~~~FIwa~il~~~ 528 (1344)
-+++|.+ ..+|+-+|.++.|+++-++- +... .+ ++| |.+.-+||.+ ++.+.+...+=|++.|+...
T Consensus 10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 4566666 46999999999999998882 2211 22 345 7888899997 56788889999999999943
Q ss_pred hhhh-hhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHH
Q 000700 529 KSCQ-VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFL 607 (1344)
Q Consensus 529 ~~~q-~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R 607 (1344)
.... .+.+ +-++.++.++..... .+.-.-|.-||..+. .++.|+...++.+.+..+++.+.+ .+...
T Consensus 89 ~~a~~~~~~--~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--------~~~~~ 156 (543)
T PF05536_consen 89 ELASSPQMV--SRIPLLLEILSSSSD-LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--------QSFQM 156 (543)
T ss_pred hhhcCHHHH--HHHHHHHHHHHcCCc-hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--------CcchH
Confidence 2221 1121 346778888865443 467778888999998 999999999999999999999873 34444
Q ss_pred HHHHHHHHHhhccchHHHHhhhc---cCchhhHhhhccCCCHHHHHHHHHHHhhhcccC
Q 000700 608 QWLCLCLGKLWEDFTEAQTIGRR---ADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 663 (1344)
Q Consensus 608 ~w~~l~Lg~l~~~~~~~~~~~~~---~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 663 (1344)
--++-+|..++.....--|..-. ..+-..+........-+-+-+++-.|+.|+...
T Consensus 157 E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 157 EIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 45555555555443321111111 122234555555556677778888888888553
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.19 E-value=28 Score=46.03 Aligned_cols=122 Identities=7% Similarity=0.046 Sum_probs=70.1
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCC-----CeEEEEEEee--------------CCCCEEEEEECCCeEE
Q 000700 1043 SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDK-----GISKLCLVNE--------------LDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~-----~ItsL~f~ns--------------~d~~~L~tgs~DG~Ir 1103 (1344)
+..|.+++.++.|.-.|.++|+.+-++........ ....+.+... ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777777788899999999998888765432111 1233444221 1345788888899888
Q ss_pred EEeccCCCCceeEEee------ee-cccCCCC---CccccceEEEEecCCCeEEEEEC----------CCeEEEEECCCC
Q 000700 1104 IWKDYDQKDKQKLVTA------FS-SIQGHKP---GVRCSNVVVDWQQQSGYLYASGE----------VSSIMLWDLEKE 1163 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~------~~-~l~~h~~---~V~s~~~~v~ws~~~~~Llagg~----------Dg~I~VWDl~~~ 1163 (1344)
-.|..+ ++..-... ++ .+..... .+++..++ .++.+++|+. +|.|+-+|.+++
T Consensus 274 ALDA~T--Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-----~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADT--GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-----AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCC--CCEEEEecCCCceeeecccCcCCCcccccccCCEE-----ECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 888766 33221100 00 0001110 11221111 2567777742 588999999999
Q ss_pred ceeeeeecC
Q 000700 1164 QQMVNPIPS 1172 (1344)
Q Consensus 1164 ~~~v~~i~~ 1172 (1344)
+ .+-.+..
T Consensus 347 k-l~W~~~~ 354 (764)
T TIGR03074 347 A-LVWAWDP 354 (764)
T ss_pred c-EeeEEec
Confidence 9 7666553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.8 Score=54.77 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccC-hhhhhhhhhcCCchhhhhh
Q 000700 469 QCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALD-KSCQVDLVKDGGHAYFIRF 547 (1344)
Q Consensus 469 ~~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~-~~~q~~l~k~~~~~yf~~~ 547 (1344)
+..|.-|+.-+-..+-+| ..++ +.||=|+|..|+-.-|+|.| ++...+.-+-- |..+..++ +.|++=
T Consensus 27 ~~kr~~a~kkvIa~Mt~G---~DvS---slF~dvvk~~~T~dlelKKl-vyLYl~nYa~~~P~~a~~av-----nt~~kD 94 (734)
T KOG1061|consen 27 KEKRKDAVKKVIAYMTVG---KDVS---SLFPDVVKCMQTRDLELKKL-VYLYLMNYAKGKPDLAILAV-----NTFLKD 94 (734)
T ss_pred hhhHHHHHHHHHhcCccC---cchH---hhhHHHHhhcccCCchHHHH-HHHHHHHhhccCchHHHhhh-----hhhhcc
Confidence 345555666544555555 2222 56999999999888899987 55554444432 33332221 222222
Q ss_pred ccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHh
Q 000700 548 LDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTI 627 (1344)
Q Consensus 548 L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~ 627 (1344)
- .+..|+.|.++.=-++.+ ....+-..+.+=|...++ |..|.+|..+++|..+|.....+ .
T Consensus 95 ~--~d~np~iR~lAlrtm~~l-------~v~~i~ey~~~Pl~~~l~-------d~~~yvRktaa~~vakl~~~~~~---~ 155 (734)
T KOG1061|consen 95 C--EDPNPLIRALALRTMGCL-------RVDKITEYLCDPLLKCLK-------DDDPYVRKTAAVCVAKLFDIDPD---L 155 (734)
T ss_pred C--CCCCHHHHHHHhhceeeE-------eehHHHHHHHHHHHHhcc-------CCChhHHHHHHHHHHHhhcCChh---h
Confidence 2 233468887765333322 222234555666777788 88999999999999999977544 6
Q ss_pred hhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccC
Q 000700 628 GRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIG 663 (1344)
Q Consensus 628 ~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 663 (1344)
+...++.+.|-.++.|.+|+|=|.++-||.-+....
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 678888889999999999999999999999998554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.75 Score=56.78 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=96.8
Q ss_pred hhhhhhhhcCCch----hhhhhccCCC-CchHHHHHHHHHHHHHhcCCcchhHHHHhhchH----HHHHHhhcCCCCCCC
Q 000700 530 SCQVDLVKDGGHA----YFIRFLDSME-AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLI----HVCLKHLQGSMPNDA 600 (1344)
Q Consensus 530 ~~q~~l~k~~~~~----yf~~~L~~~~-~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~----~~~~~~l~~~~~~~~ 600 (1344)
+.|..+.+-+.|. |.+.+|-... .....|+.+-++| +|.-.|.+--+..+.. .-|+.-|-
T Consensus 32 ~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlL----KNnvr~~~~~~~~~~~~yiKs~~l~~lg------- 100 (885)
T KOG2023|consen 32 NVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLL----KNNVRGHYNSIPSEVLDYIKSECLHGLG------- 100 (885)
T ss_pred HHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhH----hccccccccCCChHHHHHHHHHHHhhcc-------
Confidence 3444455544454 5555554322 2246688887766 6655554433333322 34666666
Q ss_pred CCCHHHHHHHHHHHHHhhccc----------------------------hHHHHhh------hccC--------chhhHh
Q 000700 601 QTEPLFLQWLCLCLGKLWEDF----------------------------TEAQTIG------RRAD--------APAIYV 638 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~----------------------------~~~~~~~------~~~~--------~~~~l~ 638 (1344)
|++|++|+-.-+.++++.... ..-+.++ ++.. ...+++
T Consensus 101 d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl 180 (885)
T KOG2023|consen 101 DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFL 180 (885)
T ss_pred CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHH
Confidence 778888888777777665321 0001111 1110 122777
Q ss_pred hhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 639 PLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 639 ~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
...++++|-.|+.++.++.+||-.... .=.++++ +....+..+.+|..|+||+.+-.++..+...
T Consensus 181 ~f~~h~spkiRs~A~~cvNq~i~~~~q--------------al~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 181 QFFKHPSPKIRSHAVGCVNQFIIIQTQ--------------ALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHHhCCChhHHHHHHhhhhheeecCcH--------------HHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999944211 0012222 2445677788999999999999888776543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.41 Score=39.50 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcE
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL 1065 (1344)
Q Consensus 1030 ~~~~I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~ 1065 (1344)
....|++++|+|..++||.|..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 4544
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.74 Score=57.25 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHhhccchHHHHhhhccCc----hhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCC
Q 000700 601 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADA----PAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEE 676 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~----~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~ 676 (1344)
.++--||-=+|..|+.+.+...+ +++.+ .++++.-+.|.-|-||-+||+||++|=+...+ +
T Consensus 96 skdk~VRfrvlqila~l~d~~~e-----idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d---------e- 160 (892)
T KOG2025|consen 96 SKDKKVRFRVLQILALLSDENAE-----IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD---------E- 160 (892)
T ss_pred CcchhHHHHHHHHHHHHhccccc-----cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC---------C-
Confidence 56788999999999999985433 44444 45677788999999999999999999743211 1
Q ss_pred CChHHHHHHHHHHHHHHHhh-ccCCChhhHHHHHHHH
Q 000700 677 CDDDEKIRAEISIIRSLLTV-VSDGSPLVRAEVAVAL 712 (1344)
Q Consensus 677 ~~~~~~~~~e~~~~~~ll~~-~~D~sp~VR~e~~~~l 712 (1344)
|..+...+..+ -+|+|++||+.+..-+
T Consensus 161 ---------e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 ---------ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ---------cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 22233344443 4899999999887544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.72 E-value=23 Score=42.92 Aligned_cols=232 Identities=11% Similarity=0.133 Sum_probs=101.5
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----cEEEEeeCCCCC-CCCe---EEEEEEeeCCCCEEEEEE--CC----CeEEEEe
Q 000700 1042 FSPIVVAAD-ENERIKIWNYEED----TLLNSFDNHDFP-DKGI---SKLCLVNELDVSLLLVAS--CN----GNIRIWK 1106 (1344)
Q Consensus 1042 dg~~Latgs-~dg~I~VWd~~tg----~~l~~~~~h~~~-~~~I---tsL~f~ns~d~~~L~tgs--~D----G~IrIWd 1106 (1344)
+.++|++.+ ..+.|.|.|+.+. +..+.+...... ...+ ..+.- -++|++++++- .+ |-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc--lp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC--LPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE---SS--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee--cCCccEEEEeccCCCCCCCCcEEEEc
Confidence 456777776 7889999998843 444544420000 0011 11111 26787888762 22 4566666
Q ss_pred ccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC--------------------CCeEEEEECCCCcee
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------------------VSSIMLWDLEKEQQM 1166 (1344)
Q Consensus 1107 l~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~--------------------Dg~I~VWDl~~~~~~ 1166 (1344)
-++ .++...|..-.+...- +..+-|++..+.++++.. ...+.+||+.+.+ .
T Consensus 164 ~~t----f~v~g~We~~~~~~~~----gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~-~ 234 (461)
T PF05694_consen 164 GET----FEVKGRWEKDRGPQPF----GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK-L 234 (461)
T ss_dssp TTT------EEEE--SB-TT----------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE-E
T ss_pred Ccc----ccccceeccCCCCCCC----CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc-E
Confidence 543 3444444332222222 223677887777777632 2579999999999 8
Q ss_pred eeeecCCCCC-CeeEEEE-EcCCCCE-EEEEECCCeEEEEEC-CCCCe---eeEeecCC--------------CCCCCCe
Q 000700 1167 VNPIPSSSDC-SISALTA-SQVHGGQ-LAAGFVDGSVRLYDV-RTPDM---LVCSTRPH--------------TQQVERV 1225 (1344)
Q Consensus 1167 v~~i~~~~~~-~VtsL~~-~s~dg~~-L~sGs~DGsVrIwDl-r~~~~---~v~~~~~~--------------~~h~~~I 1225 (1344)
++++.-..+. ....+.+ +.|+..+ |+.+.-.++|..|-. ..++- .+..+... ..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 8888865443 2334433 3344444 443334555555533 32221 11111000 0002347
Q ss_pred EEEEEecCCCCCEEEEEE-CCCcEEEEECCCCccceEEEecC------------------CCCeEEEEEcCCCCEEEEEe
Q 000700 1226 VGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYLTIDAH------------------RGSLSALAVHRHAPIIASGS 1286 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs-~DG~I~IWDlr~~~~~v~tl~~h------------------~~~Vtsla~spdg~~LasgS 1286 (1344)
+.|.+|.+ .++|...+ ..|.|+.||+.....+..+-+.. .+...-+..|-||+.|...+
T Consensus 315 tDI~iSlD--DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 315 TDILISLD--DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TT--S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeEEEccC--CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 89999998 77776665 68999999999865554433211 12335677788888665543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.7 Score=53.16 Aligned_cols=180 Identities=21% Similarity=0.198 Sum_probs=119.0
Q ss_pred hhchhhHHHHHH-HHHHHhcCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhh
Q 000700 466 LLSQCHRFRALV-LLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 544 (1344)
Q Consensus 466 LlS~~~rlral~-ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf 544 (1344)
+..|.+=+|+.. +|.++-. .+....-....||+++.+++|++...|+.-.++=.+ +=|++++.++....+.+.....
T Consensus 259 ~~kQeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL 336 (708)
T PF05804_consen 259 IRKQEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHH
Confidence 334666666544 5554443 234445557889999999999988878764333333 4567778888899999999999
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHH
Q 000700 545 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 624 (1344)
Q Consensus 545 ~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~ 624 (1344)
.++|+..+. +.+..+.=+|--+. ..+..+..-++.|++..+..+|. + +..|.-++-.|.++-.+ +++
T Consensus 337 ~kLl~s~~~--~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~-------d--~~~~~val~iLy~LS~d-d~~ 403 (708)
T PF05804_consen 337 LKLLPSENE--DLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLK-------D--PNFREVALKILYNLSMD-DEA 403 (708)
T ss_pred HHHhcCCCH--HHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhC-------C--CchHHHHHHHHHHhccC-Hhh
Confidence 999987653 56666555555543 34445667789999999999998 3 34666666666666654 456
Q ss_pred HHhhhccCchhhHhhh-ccCCCHHHHHHHHHHHhhhc
Q 000700 625 QTIGRRADAPAIYVPL-LSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 625 ~~~~~~~~~~~~l~~l-l~D~sP~VRaa~v~aL~~~i 660 (1344)
|.+....+....+..+ +.-+.++|..+++-++-.+.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 6655444444455554 45567778777655555554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.52 E-value=38 Score=40.75 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=111.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEE--eeCCCCE--EEEEE-CC---CeEEEEeccCCCC
Q 000700 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLV--NELDVSL--LLVAS-CN---GNIRIWKDYDQKD 1112 (1344)
Q Consensus 1041 pdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~--ns~d~~~--L~tgs-~D---G~IrIWdl~~~~~ 1112 (1344)
|...+++....++-+.+||++ |+.+..+... +++.+... ..-++.. |++++ .+ ..|++|.+....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 455688888899999999998 7777777533 34433321 1113332 34443 32 4799999865334
Q ss_pred ceeEEeeee-cccCCCCCccccceEEEEecCCC--eEEEEECCCeEEEEECC---CCc---eeeeeecCCCCCCeeEEEE
Q 000700 1113 KQKLVTAFS-SIQGHKPGVRCSNVVVDWQQQSG--YLYASGEVSSIMLWDLE---KEQ---QMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1113 ~~~lvs~~~-~l~~h~~~V~s~~~~v~ws~~~~--~Llagg~Dg~I~VWDl~---~~~---~~v~~i~~~~~~~VtsL~~ 1183 (1344)
....+.... .+......+. ++|+--++..+ +.++.+.+|.+..|-+. .+. ..++.+...+ .+-.+ .
T Consensus 140 ~L~~v~~~~~p~~~~~~e~y--Glcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGC-V 214 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPY--GLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGC-V 214 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEE--EEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEE-E
T ss_pred cceEcCCCCcccccccccce--eeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEE-E
Confidence 332221100 0101111222 34443444433 55666889988888764 221 2567776644 36777 4
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcEEEEECCCCc
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr~~~~----~v~~~~~~~~h~~~I~sva~sp~--~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
.+.....|..|-++.-|.-|+...... .+... .-.+....|-.|++-.. +.|.+|+|.-.+++..+||.+...
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 455667888899998888888873321 22111 11223467888888543 123344455557789999988643
Q ss_pred cceEEEe
Q 000700 1258 DAYLTID 1264 (1344)
Q Consensus 1258 ~~v~tl~ 1264 (1344)
..+..|.
T Consensus 294 ~~~g~f~ 300 (381)
T PF02333_consen 294 AYVGSFR 300 (381)
T ss_dssp -EEEEEE
T ss_pred cccceEE
Confidence 4444443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.037 Score=69.39 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=115.6
Q ss_pred CCcEEEEECCCCcE-EEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCc
Q 000700 1052 NERIKIWNYEEDTL-LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130 (1344)
Q Consensus 1052 dg~I~VWd~~tg~~-l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V 1130 (1344)
.+.|++-|.++... -..+++.. +.+-.+.|. +.+...+. -.-|...|||+..-+|+....--.+........+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~---G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFP---GGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCC---CCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 46677776654321 11234444 677788883 33333333 3447789999876445432211111122222222
Q ss_pred cccceEEEEec---CCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeE----------EEEEcCCCCEEEEEECC
Q 000700 1131 RCSNVVVDWQQ---QSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISA----------LTASQVHGGQLAAGFVD 1197 (1344)
Q Consensus 1131 ~s~~~~v~ws~---~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~Vts----------L~~~s~dg~~L~sGs~D 1197 (1344)
.- +.|.| ...++..+-+++.|++..+.+.. ...+..|... ++. +...++||..|+..+.|
T Consensus 184 ~~----V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~-~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 184 QL----VSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQR-VTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred ce----eeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCC-cccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 11 44443 34455555678888888776654 2344444433 332 33468999999999999
Q ss_pred CeEEEEECC-CCCe---eeEeecCCCCCCCCeEEEEEecC-----CCC--CEEEEEE-CCCcEEEEECCCCccceEEEec
Q 000700 1198 GSVRLYDVR-TPDM---LVCSTRPHTQQVERVVGISFQPG-----LDP--AKIVSAS-QAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1198 GsVrIwDlr-~~~~---~v~~~~~~~~h~~~I~sva~sp~-----~~g--~~Lasgs-~DG~I~IWDlr~~~~~v~tl~~ 1265 (1344)
|.++.|-+. +++. +...++.+.+| +-.|..++.. .-+ .++++++ .+..+++|..... +++ ++.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~--p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w-~Cl--l~~ 331 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKH--PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW-QCL--LDK 331 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCC--CceeeeeccccccCCccceeEEEEecccCCcceeEeeccch-hhh--hhh
Confidence 999998765 2221 33344444332 2222223322 001 1234444 4566999987766 443 111
Q ss_pred CCCCeEEEEEcCCCC------------EEEEEeCCCeEEEEe
Q 000700 1266 HRGSLSALAVHRHAP------------IIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1266 h~~~Vtsla~spdg~------------~LasgS~Dg~I~Iwd 1295 (1344)
....|..+. -+++. .+++-+-++.|++|.
T Consensus 332 ~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 332 LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 122333333 22222 123345678888886
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.46 E-value=32 Score=39.77 Aligned_cols=200 Identities=13% Similarity=0.131 Sum_probs=110.5
Q ss_pred EEEecCCCeEEEEECCCeEEEEECC------CCceeeeeecCCC----CCCeeEEEEEcCC------------CCEEEEE
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLE------KEQQMVNPIPSSS----DCSISALTASQVH------------GGQLAAG 1194 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~Dg~I~VWDl~------~~~~~v~~i~~~~----~~~VtsL~~~s~d------------g~~L~sG 1194 (1344)
++++|.+...++....+...+||.. ..+..+.+++... ....+.+ .++.. ...|+.+
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGi-VfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQ-VFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEE-EEeCCCceEEcCCCcccceeEEEE
Confidence 6778776555555678899999986 2221455665321 2235666 33321 1347888
Q ss_pred ECCCeEEEEECCCCCe----eeEeecCCCCCCCCeEEEEEecCCCCCEEEEE-ECCCcEEEEECCCCccce-EEEecC--
Q 000700 1195 FVDGSVRLYDVRTPDM----LVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAY-LTIDAH-- 1266 (1344)
Q Consensus 1195 s~DGsVrIwDlr~~~~----~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasg-s~DG~I~IWDlr~~~~~v-~tl~~h-- 1266 (1344)
++||+|.-|...-... ....+... ....--..+++-....+.+|+.+ -.+++|.+||-.-....+ ..+...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 9999999998543321 11222111 01123345666533224555544 467999999876431100 001100
Q ss_pred ------------CC--CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecC-----
Q 000700 1267 ------------RG--SLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY----- 1327 (1344)
Q Consensus 1267 ------------~~--~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd----- 1327 (1344)
.+ -|+-..-.+++.-=+.|..-|.|.+||.+|..+.++.. . +.-..-+.|+..|-
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as--~----g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS--S----GRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc--C----CcccCCceeeeChhhhCCC
Confidence 00 11111222222222334455899999999999998853 2 23356677887553
Q ss_pred -CCEEEEEECCCeEEEcC
Q 000700 1328 -QVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1328 -g~~Lasgs~Dg~I~IWd 1344 (1344)
+.+|+---.||+|..||
T Consensus 260 sg~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYD 277 (336)
T ss_pred CCCeEEeecCCceeEEec
Confidence 45666555599999986
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=12 Score=47.46 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=88.4
Q ss_pred CCCCEEEEEECCC------cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-----CeEEEEeccC
Q 000700 1041 PFSPIVVAADENE------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-----GNIRIWKDYD 1109 (1344)
Q Consensus 1041 pdg~~Latgs~dg------~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-----G~IrIWdl~~ 1109 (1344)
.++..++.|+.++ .+..||..+++... +.....+......+.+ ++.+.+.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC
Confidence 3455666666432 56778877665532 2211111122223332 57777788765 2466677654
Q ss_pred CCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC--C----CeEEEEECCCCceee--eeecCCCCCCeeEE
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--V----SSIMLWDLEKEQQMV--NPIPSSSDCSISAL 1181 (1344)
Q Consensus 1110 ~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~--D----g~I~VWDl~~~~~~v--~~i~~~~~~~VtsL 1181 (1344)
+.... ......+.... +++. -++...+.||. + +.+..||..+.. -. ..++..... .++
T Consensus 368 --~~W~~------~~~lp~~r~~~--~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~--~~~ 433 (534)
T PHA03098 368 --SKWRE------EPPLIFPRYNP--CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYG--GCA 433 (534)
T ss_pred --Cceee------CCCcCcCCccc--eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccC--ceE
Confidence 22222 21111111111 1111 13444444552 1 458899988765 21 122211111 122
Q ss_pred EEEcCCCCEEEEEECCC--------eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcE
Q 000700 1182 TASQVHGGQLAAGFVDG--------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDI 1248 (1344)
Q Consensus 1182 ~~~s~dg~~L~sGs~DG--------sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D-----G~I 1248 (1344)
.. .++.+++.|+.++ .+.+||..+.+ ................+.+ + +..++.|+.+ +.|
T Consensus 434 ~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 434 IY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--N--NKIYVVGGDKYEYYINEI 505 (534)
T ss_pred EE--ECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--C--CEEEEEcCCcCCccccee
Confidence 12 2566777776432 38889988764 2222111111111112222 4 6777777754 467
Q ss_pred EEEECCCC
Q 000700 1249 QFLDIRNH 1256 (1344)
Q Consensus 1249 ~IWDlr~~ 1256 (1344)
.+||..+.
T Consensus 506 ~~yd~~~~ 513 (534)
T PHA03098 506 EVYDDKTN 513 (534)
T ss_pred EEEeCCCC
Confidence 88887754
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.66 Score=59.08 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCch
Q 000700 555 PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAP 634 (1344)
Q Consensus 555 ~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~ 634 (1344)
+..|+-+.+-||.+|--+.. +-..++..+...|+. ....-+|-=.++++|-||..|.. .++..++
T Consensus 945 ~~vra~~vvTlakmcLah~~-----LaKr~~P~lvkeLe~------~~~~aiRnNiV~am~D~C~~YTa----m~d~YiP 1009 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR-----LAKRLMPMLVKELEY------NTAHAIRNNIVLAMGDICSSYTA----MTDRYIP 1009 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHh------hhHHHHhcceeeeehhhHHHHHH----HHHHhhH
Confidence 78899899999998833322 334456677777774 45677899999999999987743 1334444
Q ss_pred hhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHH
Q 000700 635 AIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALAR 714 (1344)
Q Consensus 635 ~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~ 714 (1344)
++...|.|++|.||+-.++.|++++..+. +...-.+-...+..+-|.++-+|.-+-+.++.
T Consensus 1010 -~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~------------------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~ 1070 (1529)
T KOG0413|consen 1010 -MIAASLCDPSVIVRRQTIILLARLLQFGI------------------VKWNGELFIRFMLALLDANEDIRNDAKFYISE 1070 (1529)
T ss_pred -HHHHHhcCchHHHHHHHHHHHHHHHhhhh------------------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 88899999999999999999999995421 11112222333334459999999999999999
Q ss_pred HHhh-----ccchHHHHHHhh
Q 000700 715 FAFG-----HKQHLKSIAAAY 730 (1344)
Q Consensus 715 ~~~~-----~~~~f~~~a~~~ 730 (1344)
++.. +..+|+..-+..
T Consensus 1071 vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1071 VLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHhhcCccchHHHHHHHHHHH
Confidence 8866 445676655543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.14 E-value=12 Score=42.51 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=118.4
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCc-EEEEECCCCcEEEEe--------eCCCCCCCCeEEEEEEeeCCCCEEEEEECC--
Q 000700 1032 KGTKTALLQPFSP-IVVAADENER-IKIWNYEEDTLLNSF--------DNHDFPDKGISKLCLVNELDVSLLLVASCN-- 1099 (1344)
Q Consensus 1032 ~~I~~l~fspdg~-~Latgs~dg~-I~VWd~~tg~~l~~~--------~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-- 1099 (1344)
..-..|+|||..+ -++.+-.-|+ ..++|....+...++ -+|. +| ++||.+|+..-.|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG---------vf--s~dG~~LYATEndfd 136 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG---------VF--SPDGRLLYATENDFD 136 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc---------cc--CCCCcEEEeecCCCC
Confidence 3455677888766 4555555554 467788876555443 3444 56 7899999987554
Q ss_pred ---CeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC-------C-----------eEEEE
Q 000700 1100 ---GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-------S-----------SIMLW 1158 (1344)
Q Consensus 1100 ---G~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D-------g-----------~I~VW 1158 (1344)
|.|-|||... + ...+ ..+..|.-.-.. +.|.+|+..++++... | ++.+.
T Consensus 137 ~~rGViGvYd~r~--~-fqrv---gE~~t~GiGpHe----v~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 137 PNRGVIGVYDARE--G-FQRV---GEFSTHGIGPHE----VTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred CCCceEEEEeccc--c-ccee---cccccCCcCcce----eEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 8899999864 1 2222 234555544455 7888888888876431 1 23334
Q ss_pred ECCCCceeeeee--c--CCCCCCeeEEEEEcCCCCEEEEEECCCeE-----EEEECCCCCeeeEeecCCC----CCCCCe
Q 000700 1159 DLEKEQQMVNPI--P--SSSDCSISALTASQVHGGQLAAGFVDGSV-----RLYDVRTPDMLVCSTRPHT----QQVERV 1225 (1344)
Q Consensus 1159 Dl~~~~~~v~~i--~--~~~~~~VtsL~~~s~dg~~L~sGs~DGsV-----rIwDlr~~~~~v~~~~~~~----~h~~~I 1225 (1344)
|..++. .+... + .+.-+ |..+ ....+|...+.+-..|.- .+=-.+.++ ....+..-+ .-...|
T Consensus 207 d~atG~-liekh~Lp~~l~~lS-iRHl-d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~-~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 207 DAATGN-LIEKHTLPASLRQLS-IRHL-DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE-PLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred eccccc-hhhhccCchhhhhcc-eeee-eeCCCCcEEEEEEeeCCCccCCcceeeccCCC-cCcccCCCHHHHHHHHhhh
Confidence 434443 33221 1 11222 5555 334444433322222210 000001111 111110000 012457
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 000700 1226 VGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1226 ~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd 1295 (1344)
-+|+.+.+ .+-..+|.-..+...+||..++ ..+..-.- .....++. ...-++..+.+|.+.++.
T Consensus 283 gsiA~n~~-~glV~lTSP~GN~~vi~da~tG-~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 283 GSIAANRR-DGLVALTSPRGNRAVIWDAATG-AVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hheeeccc-CCeEEEecCCCCeEEEEEcCCC-cEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 78888876 3444444445566789999988 44433221 11223333 333455556678888774
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.12 E-value=3.5 Score=50.50 Aligned_cols=136 Identities=19% Similarity=0.212 Sum_probs=83.1
Q ss_pred EcCCCCEEEEE-ECC---CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEE-EEEECCCc--EEEEECCCC
Q 000700 1184 SQVHGGQLAAG-FVD---GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI-VSASQAGD--IQFLDIRNH 1256 (1344)
Q Consensus 1184 ~s~dg~~L~sG-s~D---GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~L-asgs~DG~--I~IWDlr~~ 1256 (1344)
+.+++..++.- ... ..+.++|+.+++.... . ... +.-..-+|+|+ |+.| ++...||. |.++|+...
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~-~~~---g~~~~P~fspD--G~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-L-NFN---GNNGAPAFSPD--GSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCcccee-e-ccC---CccCCccCCCC--CCEEEEEECCCCCccEEEEcCCCC
Confidence 44555543332 222 4589999998873322 2 222 33445689999 5554 55666776 566677755
Q ss_pred ccceEEEecCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEE
Q 000700 1257 KDAYLTIDAHRGSLSALAVHRHAPIIASGSA-KQ--LIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAA 1333 (1344)
Q Consensus 1257 ~~~v~tl~~h~~~Vtsla~spdg~~LasgS~-Dg--~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Las 1333 (1344)
. ...+....+.-+.=.|+|+|+.++-.+. .| .|.+++.+|.....+.. .. +.-..-.|+|+|++++.
T Consensus 273 -~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~-------~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 273 -N-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SG-------GGNSNPVWSPDGDKIVF 342 (425)
T ss_pred -c-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cC-------CCCcCccCCCCCCEEEE
Confidence 2 3334433443446689999997776544 34 36666788887776665 32 22227789999998887
Q ss_pred EEC
Q 000700 1334 GSA 1336 (1344)
Q Consensus 1334 gs~ 1336 (1344)
.+.
T Consensus 343 ~~~ 345 (425)
T COG0823 343 ESS 345 (425)
T ss_pred Eec
Confidence 774
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.6 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceE
Q 000700 1267 RGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQL 1301 (1344)
Q Consensus 1267 ~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l 1301 (1344)
...|.+++|+|...+||.|+.+|.|.+|.++++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 45699999999999999999999999999887654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=90.60 E-value=49 Score=40.42 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCCCCeEE-EEEcCC-----------------CCEE-E
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSA-LAVHRH-----------------APII-A 1283 (1344)
Q Consensus 1223 ~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~~~Vts-la~spd-----------------g~~L-a 1283 (1344)
..+.+++.+|. +++.++...=|.|.++|+..+ ..++.+++.++.=.. +..... ..+| +
T Consensus 308 R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSPS--GRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECCC--CCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 45778999999 898888877899999999988 788888876542111 111111 1122 2
Q ss_pred EEeCCCeEEEEeC-CCceEEEEec
Q 000700 1284 SGSAKQLIKVFSL-EGEQLGTIRY 1306 (1344)
Q Consensus 1284 sgS~Dg~I~Iwd~-~g~~l~~l~~ 1306 (1344)
-.-.-|.|.||++ .|..+..+..
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 3455678888884 5666666543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.1 Score=56.65 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=99.5
Q ss_pred CchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhc
Q 000700 540 GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 619 (1344)
Q Consensus 540 ~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~ 619 (1344)
+|+=+++..+..+. |+|.|+=+=|...-...|..+..|++.- +.=-. |++|++|..++=-+|.+.-
T Consensus 50 lF~dvvk~~~T~dl--elKKlvyLYl~nYa~~~P~~a~~avnt~-----~kD~~-------d~np~iR~lAlrtm~~l~v 115 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL--ELKKLVYLYLMNYAKGKPDLAILAVNTF-----LKDCE-------DPNPLIRALALRTMGCLRV 115 (734)
T ss_pred hhHHHHhhcccCCc--hHHHHHHHHHHHhhccCchHHHhhhhhh-----hccCC-------CCCHHHHHHHhhceeeEee
Confidence 45555566666665 9999998888666666666665544332 22222 8899999877766665553
Q ss_pred cchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccC
Q 000700 620 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSD 699 (1344)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D 699 (1344)
+. +-+.+.+-|..+++|..|.||+.+++....+-....+.+ .+..+...|-.++.|
T Consensus 116 ~~-------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~-----------------~~~gl~~~L~~ll~D 171 (734)
T KOG1061|consen 116 DK-------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV-----------------EDSGLVDALKDLLSD 171 (734)
T ss_pred hH-------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc-----------------cccchhHHHHHHhcC
Confidence 31 334556678999999999999999999999874432221 233445566667779
Q ss_pred CChhhHHHHHHHHHHHHhhcc
Q 000700 700 GSPLVRAEVAVALARFAFGHK 720 (1344)
Q Consensus 700 ~sp~VR~e~~~~ls~~~~~~~ 720 (1344)
.+|+|-..++-+++-+.....
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCC
Confidence 999999999999988776653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.72 E-value=39 Score=43.23 Aligned_cols=245 Identities=14% Similarity=0.109 Sum_probs=117.7
Q ss_pred CcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCccc
Q 000700 1053 ERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRC 1132 (1344)
Q Consensus 1053 g~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s 1132 (1344)
-.|+||+.. |+.+.++.-.. +.+-.+.| + +...|++...+|+++||++... ..+.. + .........|..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~---~~lI~mgW--s-~~eeLI~v~k~g~v~Vy~~~ge--~ie~~-s-vg~e~~~~~I~e 132 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH---GELIGMGW--S-DDEELICVQKDGTVHVYGLLGE--FIESN-S-VGFESQMSDIVE 132 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC---CCeeeecc--c-CCceEEEEeccceEEEeecchh--hhccc-c-cccccccCceeE
Confidence 458888875 77766655444 47888888 3 5667777889999999998541 11110 0 001111222222
Q ss_pred cceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeec---CCCCCCeeEEEEEcCCCCEEEEEECCCeE--EEEECCC
Q 000700 1133 SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP---SSSDCSISALTASQVHGGQLAAGFVDGSV--RLYDVRT 1207 (1344)
Q Consensus 1133 ~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~---~~~~~~VtsL~~~s~dg~~L~sGs~DGsV--rIwDlr~ 1207 (1344)
+-.|. +|..+...++..+.+-+..... ...++ ..... -+|-+.+.++......-..+-.| .++-...
T Consensus 133 ---c~~f~--~GVavlt~~g~v~~i~~~~~~~--~~~~~diP~~~~~-~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~ 204 (829)
T KOG2280|consen 133 ---CRFFH--NGVAVLTVSGQVILINGVEEPK--LRKMPDIPYNELP-KSCWTVFQPHRQSTILLDVDVAVGLHICQVEE 204 (829)
T ss_pred ---EEEec--CceEEEecCCcEEEEcCCCcch--hhhCCCCCCccCC-CcceeEecCCCcceeEEeechhhhhcccceec
Confidence 23333 4444444444445555544432 22222 21111 12332333322211111111000 1111111
Q ss_pred CCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC-CCeEEEEEcCCCCEEEEEe
Q 000700 1208 PDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-GSLSALAVHRHAPIIASGS 1286 (1344)
Q Consensus 1208 ~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~-~~Vtsla~spdg~~LasgS 1286 (1344)
.. +... .+..-.+.+..+.++|+ .++|+-=..+|.|.+-+.... +...++.... ..--.++|..+...+ .+
T Consensus 205 ~~--~q~~-~~~~~~~~~~ki~VS~n--~~~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p~qm~WcgndaVv--l~ 276 (829)
T KOG2280|consen 205 SR--VQLH-ALSWPNSSVVKISVSPN--RRFLALYTETGKIWVVSIDLS-QILCEFNCTDHDPPKQMAWCGNDAVV--LS 276 (829)
T ss_pred cc--cccc-ccCCCCceEEEEEEcCC--cceEEEEecCCcEEEEecchh-hhhhccCCCCCCchHhceeecCCceE--EE
Confidence 11 1111 11111256778999998 999999999999999988766 5555555211 122255665443222 12
Q ss_pred CCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEE
Q 000700 1287 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1287 ~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs 1335 (1344)
.+..+.+..-.|..+.-+.. ++ +. +.--+||-.+++.+
T Consensus 277 ~e~~l~lvgp~gd~V~f~yd-~t---------~~-l~~E~DGVRI~t~t 314 (829)
T KOG2280|consen 277 WEVNLMLVGPPGDSVQFYYD-ET---------AI-LSAEVDGVRIITST 314 (829)
T ss_pred EeeeEEEEcCCCCccccccC-CC---------ce-eeeccCeeEEeccc
Confidence 33344444444554444333 22 21 55556666665543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=28 Score=44.70 Aligned_cols=189 Identities=12% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCeEEEEEEeeCCCCEEEEEE------CCCeEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEE
Q 000700 1077 KGISKLCLVNELDVSLLLVAS------CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG 1150 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs------~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg 1150 (1344)
..+.+.+. +++|+.++... .|+.-.+|-.... +....+ ..+. .... -.|+++++.+++..
T Consensus 350 ~~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~l-----t~g~--~~t~----PsWspDG~~lw~v~ 415 (591)
T PRK13616 350 GNITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQV-----LEGH--SLTR----PSWSLDADAVWVVV 415 (591)
T ss_pred cCcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceee-----ecCC--CCCC----ceECCCCCceEEEe
Confidence 45777888 78888877665 2444455543321 222222 1222 1333 68999988777664
Q ss_pred CC------------CeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEE---EECCCCCeeeEee
Q 000700 1151 EV------------SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRL---YDVRTPDMLVCST 1215 (1344)
Q Consensus 1151 ~D------------g~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrI---wDlr~~~~~v~~~ 1215 (1344)
+. +.+.+.+++.+. ... .....|.++ .+++||..++... +|.|.+ -....+...+...
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge-~~~----~~~g~Issl-~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASA-VAS----RVPGPISEL-QLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCch-hhh----ccCCCcCeE-EECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 32 233333333333 111 112349999 7899999888766 577776 3323332111110
Q ss_pred cCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEec--CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 000700 1216 RPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA--HRGSLSALAVHRHAPIIASGSAKQLI 1291 (1344)
Q Consensus 1216 ~~~~-~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~--h~~~Vtsla~spdg~~LasgS~Dg~I 1291 (1344)
.... +-...+.++.|..+ +. |+++..++...+|.+.-.+.....+.. ....+.+++-++. . ++....++.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~--~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g~~ 562 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTG--DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARAVL 562 (591)
T ss_pred EEeecccCCccccceEecC--CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e-EEEEcCCceE
Confidence 0111 11234688999987 66 456666665556655433322222222 2456777777753 3 3344455533
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.64 E-value=5.2 Score=47.37 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=102.5
Q ss_pred CchhhHHHHhhchhhHHHHHHHHHHHhcCCHHHHHHHHhcCc----hhhhHHhcc-CCchhhhhHHHHHHHHHhccChhh
Q 000700 457 EQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGI----FPYVLKLLQ-TTTPELRQILVFIWTKILALDKSC 531 (1344)
Q Consensus 457 ~~lP~vLq~LlS~~~rlral~ll~~fld~~~wAv~lal~~gi----fpyvlklL~-s~~~elr~~~~FIwa~il~~~~~~ 531 (1344)
+.+|-...+|.+..+.+|-.-+ | +|.... .|.++++|+ +...-.|.-+++.+.++-.- .+
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~---~----------aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~a 138 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAA---D----------ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE--RA 138 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH---H----------HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--hh
Confidence 5677777777777776665544 1 333322 567778888 46656776666666555432 22
Q ss_pred hhhhhhcCCchhhhhhccCCC--------Cch--HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCC
Q 000700 532 QVDLVKDGGHAYFIRFLDSME--------AYP--EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQ 601 (1344)
Q Consensus 532 q~~l~k~~~~~yf~~~L~~~~--------~~~--~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~ 601 (1344)
... .+..|++.. ..+ ..|..++..|+.+- .......+..++. +
T Consensus 139 ~~~---------l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~-------~ 191 (335)
T COG1413 139 LDP---------LLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLE-------D 191 (335)
T ss_pred hHH---------HHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHh-------C
Confidence 222 222333222 001 45777777776662 4456778888888 7
Q ss_pred CCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 602 TEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 602 ~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+...+|.++..+||++.... ..+...+...+.|++..||.+++.+||..-
T Consensus 192 ~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 192 EDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred chHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 88899999999999998775 334457889999999999999999999875
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=89.29 E-value=8 Score=47.20 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCchhhhHHhccCC-chhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccC
Q 000700 472 RFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDS 550 (1344)
Q Consensus 472 rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~ 550 (1344)
-..|..+|++++..|+--.......-++.|+...|.++ ..+...+++-.++.++..+..- ...++.+|.+.+..+|..
T Consensus 118 ~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 118 VHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSN 196 (429)
T ss_pred HHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhh
Confidence 35688888888876652111111112556767777654 4678888999999999886544 346677789999999975
Q ss_pred CC
Q 000700 551 ME 552 (1344)
Q Consensus 551 ~~ 552 (1344)
..
T Consensus 197 ~~ 198 (429)
T cd00256 197 AT 198 (429)
T ss_pred cc
Confidence 44
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.3 Score=52.01 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=77.3
Q ss_pred ccChhhhhhhhhcCCchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHH
Q 000700 526 ALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPL 605 (1344)
Q Consensus 526 ~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 605 (1344)
..||-| .+++. +.+.|.++.+.+++. --|--++=+||.+.+..++--.. +-.++.+++.+.+- |-.|-
T Consensus 80 ~~dpeg-~~~V~-~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~-------DRE~~ 147 (885)
T COG5218 80 PDDPEG-EELVA-GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLF-------DREKA 147 (885)
T ss_pred CCChhh-hHHHH-HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHh-------cchHH
Confidence 345666 45553 455666777777665 56778888999999887773333 34455566666666 77899
Q ss_pred HHHHHHHHHHHhhccchHHHHhhhccCchhhHhhh-ccCCCHHHHHHHHHHHh
Q 000700 606 FLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPL-LSEPQPEVRASAVFSLG 657 (1344)
Q Consensus 606 ~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~l-l~D~sP~VRaa~v~aL~ 657 (1344)
||.=++.||.++-+.-...+. .+...|..+ .+|||.|||.+++.-+.
T Consensus 148 VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 148 VRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred HHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 999999999999755322221 122234444 48999999998876554
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=28 Score=44.64 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCCcEEEE--ECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECC-CeE
Q 000700 1032 KGTKTALLQPFSPIVVAAD------ENERIKIW--NYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GNI 1102 (1344)
Q Consensus 1032 ~~I~~l~fspdg~~Latgs------~dg~I~VW--d~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~D-G~I 1102 (1344)
..+...+++|+|+.++... .|+.-.+| +.. +.. ..+... ...+.-.| +++|+.|++..+. ..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g----~~~t~PsW--spDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG----HSLTRPSW--SLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC----CCCCCceE--CCCCCceEEEecCcceE
Confidence 3578899999999877654 24444444 542 222 333222 23666777 7898888877643 223
Q ss_pred EEEeccCCCCceeEEeeee--ccc-CCCCCccccceEEEEecCCCeEEEEECCCeEEE---EECCCCceee---eeecCC
Q 000700 1103 RIWKDYDQKDKQKLVTAFS--SIQ-GHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML---WDLEKEQQMV---NPIPSS 1173 (1344)
Q Consensus 1103 rIWdl~~~~~~~~lvs~~~--~l~-~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~V---WDl~~~~~~v---~~i~~~ 1173 (1344)
++.+... .+..... ... ... .....|.. +.|+++|..++... +|.|.+ -....+...+ ..+...
T Consensus 422 ~v~~~~~-~gql~~~-~vd~ge~~~~~~g~Iss----l~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 422 RVIRDPA-TGQLART-PVDASAVASRVPGPISE----LQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEeccCC-CceEEEE-eccCchhhhccCCCcCe----EEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 3333211 1111100 000 000 22344665 99999999988876 366766 3322232011 112222
Q ss_pred CCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEE
Q 000700 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249 (1344)
Q Consensus 1174 ~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~ 1249 (1344)
....+.++ .|..++.+ +++..++...+|.+.-.-.....+ ........+..|+-.+. .++.+..+|.+.
T Consensus 495 l~~~~~~l-~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSL-DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS----TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccc-eEecCCEE-EEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc----eEEEEcCCceEE
Confidence 22225777 45556664 455555555555443221111111 11112356777766543 455566666433
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.7 Score=41.76 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhc
Q 000700 562 AFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLL 641 (1344)
Q Consensus 562 afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll 641 (1344)
..+|+.++-..+.. ..-.-..++.-.+..+. |+++.||..+|=+|.++.....+.- ...-..+.+.|.+++
T Consensus 7 li~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~-------D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 7 LIGLAAVAIALGKD-ISKYLDEILPPVLKCFD-------DQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLS 77 (97)
T ss_pred HHHHHHHHHHchHh-HHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34455554443332 33345566666777777 8999999999999999986543221 112344556789999
Q ss_pred cCCCHHHHHHHHH
Q 000700 642 SEPQPEVRASAVF 654 (1344)
Q Consensus 642 ~D~sP~VRaa~v~ 654 (1344)
.|+.|.||.++-+
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 9999999999854
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.87 E-value=13 Score=47.79 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred eEEEEEecCCCCCEEEEEECCCcEEEEECCCCc-------------------cceEEEecCCCCeEEEEEc--CCCCEEE
Q 000700 1225 VVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK-------------------DAYLTIDAHRGSLSALAVH--RHAPIIA 1283 (1344)
Q Consensus 1225 I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~-------------------~~v~tl~~h~~~Vtsla~s--pdg~~La 1283 (1344)
|+.+.+..-++...|+.+.+||.|.+|.+..-- +|...+. -....+++++| ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 555554433456788999999999999763110 1222222 24478999999 8888999
Q ss_pred EEeCCCeEEEEeCCC--ceEEEEeccCCccccccCCCeEEEEEecCC------CEEEEEECCCeEEEcC
Q 000700 1284 SGSAKQLIKVFSLEG--EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ------VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1284 sgS~Dg~I~Iwd~~g--~~l~~l~~~h~~f~~~~~~~V~slafspdg------~~Lasgs~Dg~I~IWd 1344 (1344)
+++....|.||-... ........ | .+...|.+++|-++. ..|++++-.|.+.+|+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s-~-----~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPS-H-----QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EecCCceEEEEEEeccccccccccc-c-----ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 999999999987432 11111111 1 244679999997654 2777888899988764
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.44 Score=56.23 Aligned_cols=199 Identities=18% Similarity=0.254 Sum_probs=118.4
Q ss_pred hhhHHHhcC-CCC-C--CCCCCchhhHHHHhhchhhHH--HHHH-HHHHHhcCCH------HHHHHHHhcCchhhhHHhc
Q 000700 440 TAFEVWLDH-GSE-H--KKPPEQLPIVLQVLLSQCHRF--RALV-LLGRFLDMGP------WAVDLALSVGIFPYVLKLL 506 (1344)
Q Consensus 440 tafe~~L~~-g~~-~--~~~p~~lP~vLq~LlS~~~rl--ral~-ll~~fld~~~------wAv~lal~~gifpyvlklL 506 (1344)
+.|-.||-. .+- + .+--..+|.+.+++...+.+. |-++ ++.++||.|| -+....+-.++ |--+++|
T Consensus 220 sifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L 298 (442)
T KOG2759|consen 220 SIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSL 298 (442)
T ss_pred HHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHH
Confidence 456777542 221 1 111256677777776655442 3333 5567888885 22222233333 3334444
Q ss_pred cCC---chhhhhHHHHHHHHHhccChhhhhhhhhcC-CchhhhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHH--
Q 000700 507 QTT---TPELRQILVFIWTKILALDKSCQVDLVKDG-GHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI-- 580 (1344)
Q Consensus 507 ~s~---~~elr~~~~FIwa~il~~~~~~q~~l~k~~-~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~-- 580 (1344)
+.. .+|+..-+-||-.+.-. +.|..+--|. .-..+...|..+ |-||- ..||+.+-. ++
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~---svq~LsSFDeY~sEl~sG~L~WS---P~Hk~------e~FW~eNa~----rlne 362 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKN---SVQDLSSFDEYKSELRSGRLEWS---PVHKS------EKFWRENAD----RLNE 362 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHH---HHHhhccHHHHHHHHHhCCcCCC---ccccc------cchHHHhHH----HHhh
Confidence 422 45676666666654432 2221111000 001122233322 22321 123433221 23
Q ss_pred -hhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhh
Q 000700 581 -EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTL 659 (1344)
Q Consensus 581 -~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~ 659 (1344)
+-+++.++..+|+. ..+|.+-+-+|.=+|+++.-+|+++.+..+-++-+.+..|++.+.|+||-.|+.|+.++
T Consensus 363 nnyellkiL~~lLe~------s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 363 NNYELLKILIKLLET------SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL 436 (442)
T ss_pred ccHHHHHHHHHHHhc------CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34567788889985 55799999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 000700 660 LD 661 (1344)
Q Consensus 660 i~ 661 (1344)
+.
T Consensus 437 m~ 438 (442)
T KOG2759|consen 437 MV 438 (442)
T ss_pred Hh
Confidence 73
|
|
| >smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.1 Score=47.05 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhccC---CCceEEEEEcCCCCCCCCCCceEEEeCccccccHHHHH
Q 000700 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRRYA---KGERVLFHYNGHGVPKPTANGEIWLFNKYIPLPISDLD 226 (1344)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~---~~~r~lfhy~ghg~p~pt~~g~i~~~~~y~p~~~~~l~ 226 (1344)
.++|.+-++++- -......|.+.+++++.+..+.+.. ..+=++|-|-|||. .|.|+--|. .++++.+|.
T Consensus 32 ~~~l~~~f~~lg--F~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~-----~~~l~~~D~-~~v~l~~i~ 103 (241)
T smart00115 32 AENLTELFQSLG--YEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE-----EGGIYGTDH-SPLPLDEIF 103 (241)
T ss_pred HHHHHHHHHHCC--CEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC-----CCeEEEecC-CEEEHHHHH
Confidence 455666665533 3556789999999999998886642 34557888999995 366776664 367888887
Q ss_pred hhc---------CCCeEEEEeCCchhhHHHHHHhhcccCCCCCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhcccch
Q 000700 227 SWL---------KTPSIYVFDCSAAGMIVNAFIELHDWGASNYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTP 297 (1344)
Q Consensus 227 ~~~---------~~p~~~v~dc~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~ac~~~e~lp~~~~lp~d~ftscl~tP 297 (1344)
+.+ |.|-+||+|..-....-..+....+. ... .+......+. ...-++|+|-+.-|.|
T Consensus 104 ~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~~~~~~----~~~--------~~~~~~~~~~-~~p~~~D~li~ysT~p 170 (241)
T smart00115 104 SLFNGDNCPSLAGKPKLFFIQACRGDELDGGVPVEDDV----DDP--------PTEFEDDAIY-KIPVEADFLAAYSTTP 170 (241)
T ss_pred HhccccCChhhcCCCcEEEEeCCCCCCCCCCeeccccc----ccc--------cccccccccc-cCCCcCcEEEEEeCCC
Confidence 777 68999999987543211101000000 000 0001111111 1224789999999999
Q ss_pred HHHHHH
Q 000700 298 ITMALR 303 (1344)
Q Consensus 298 ~~~al~ 303 (1344)
-..|.+
T Consensus 171 G~va~r 176 (241)
T smart00115 171 GYVSWR 176 (241)
T ss_pred CeEeec
Confidence 988754
|
Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.34 E-value=11 Score=45.30 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000700 1178 ISALTASQVHGGQLAAGF-----------VDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1178 VtsL~~~s~dg~~L~sGs-----------~DG-sVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D 1245 (1344)
...| .+.++|+++++-. ..+ .|.+++-..+.-.......+.........+++.++ + ++ +++..
T Consensus 16 P~~i-a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~--G-ly-V~~~~ 90 (367)
T TIGR02604 16 PIAV-CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG--G-VY-VATPP 90 (367)
T ss_pred Ccee-eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC--C-EE-EeCCC
Confidence 4556 5567777766642 223 67776544322111111111111245678999887 6 44 44444
Q ss_pred CcEEEEECCCCc------c-ceEEEec----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEe
Q 000700 1246 GDIQFLDIRNHK------D-AYLTIDA----HRGSLSALAVHRHAPIIASGSAK-------------------QLIKVFS 1295 (1344)
Q Consensus 1246 G~I~IWDlr~~~------~-~v~tl~~----h~~~Vtsla~spdg~~LasgS~D-------------------g~I~Iwd 1295 (1344)
...++.|....+ + .+..+.. +......+.|.|+|.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 433344554211 1 1122222 12447789999999876654421 3455555
Q ss_pred CCCceEEEEeccCCccccccCCCeEEEEEecCCCEEEEEEC
Q 000700 1296 LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1296 ~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.++..+..+.. .......++|+++|.++++-..
T Consensus 171 pdg~~~e~~a~--------G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 171 PDGGKLRVVAH--------GFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCeEEEEec--------CcCCCccceECCCCCEEEEccC
Confidence 55555554433 1245688999999988776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=15 Score=45.96 Aligned_cols=185 Identities=9% Similarity=-0.017 Sum_probs=86.3
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCC--eEEEEeccCCCCce
Q 000700 1042 FSPIVVAADENE-----RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1042 dg~~Latgs~dg-----~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG--~IrIWdl~~~~~~~ 1114 (1344)
++.++++|+.++ .+..||..+++....-.-.. +......+. -++.+.++||.++ .+..||... +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~----~~~~iYviGG~~~~~sve~ydp~~--n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYASGVP----ANNKLYVVGGLPNPTSVERWFHGD--AAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcceEEE----ECCEEEEECCcCCCCceEEEECCC--CeE
Confidence 345666776443 46677877665433221111 111222222 2677777777543 466777543 222
Q ss_pred eEEeeeecccCCCCCccccceEEEEecCCCeEEEEECC---CeEEEEECCCCceeee--eecCCCCCCeeEEEEEcCCCC
Q 000700 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1115 ~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~D---g~I~VWDl~~~~~~v~--~i~~~~~~~VtsL~~~s~dg~ 1189 (1344)
.............+ .+.. ++...+.||.+ ..+..||.++.. -.. ........ .++.. -++.
T Consensus 344 ------~~~~~l~~~r~~~~-~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~--~~~~~--~~~~ 409 (480)
T PHA02790 344 ------VNMPSLLKPRCNPA-VASI--NNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYK--SCALV--FGRR 409 (480)
T ss_pred ------EECCCCCCCCcccE-EEEE--CCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCcccc--ceEEE--ECCE
Confidence 22222221221111 1221 34444555543 347788987765 221 11111111 12212 2566
Q ss_pred EEEEEECCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC-----CcEEEEECCCC
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-----GDIQFLDIRNH 1256 (1344)
Q Consensus 1190 ~L~sGs~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D-----G~I~IWDlr~~ 1256 (1344)
+.+.| |.+.+||.++.+ .............. +++.. + +++.+.|+.+ ..|..||..+.
T Consensus 410 IYv~G---G~~e~ydp~~~~--W~~~~~m~~~r~~~-~~~v~-~--~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 410 LFLVG---RNAEFYCESSNT--WTLIDDPIYPRDNP-ELIIV-D--NKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEEC---CceEEecCCCCc--EeEcCCCCCCcccc-EEEEE-C--CEEEEECCcCCCcccceEEEEECCCC
Confidence 66666 457889987654 22222221111222 22222 2 7788888764 34667776654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=13 Score=47.07 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=73.0
Q ss_pred CCCeEEEEECC-----CeEEEEECCCCceeee--eecCCCCCCeeEEEEEcCCCCEEEEEECC------CeEEEEECCCC
Q 000700 1142 QSGYLYASGEV-----SSIMLWDLEKEQQMVN--PIPSSSDCSISALTASQVHGGQLAAGFVD------GSVRLYDVRTP 1208 (1344)
Q Consensus 1142 ~~~~Llagg~D-----g~I~VWDl~~~~~~v~--~i~~~~~~~VtsL~~~s~dg~~L~sGs~D------GsVrIwDlr~~ 1208 (1344)
++..++.||.+ ..+..||..+.+ -.. .++..... .++.. .++.+.+.|+.+ ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~--~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYN--PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCcc--ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 34555556643 357788887665 221 12211111 11212 256777777732 45888998765
Q ss_pred CeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCC--------cEEEEECCCCccceEEEe---cCCCCeEEEEEcC
Q 000700 1209 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTID---AHRGSLSALAVHR 1277 (1344)
Q Consensus 1209 ~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG--------~I~IWDlr~~~~~v~tl~---~h~~~Vtsla~sp 1277 (1344)
+ .............. ++.. -+ +..++.|+.++ .+.+||..+.. ...+. ........+.+
T Consensus 417 ~--W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-- 486 (534)
T PHA03098 417 K--WSKGSPLPISHYGG-CAIY-HD--GKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF-- 486 (534)
T ss_pred e--eeecCCCCccccCc-eEEE-EC--CEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--
Confidence 4 22211111111111 2222 23 66777776432 38889987652 22221 11111122222
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCceEEEEec
Q 000700 1278 HAPIIASGSAK-----QLIKVFSLEGEQLGTIRY 1306 (1344)
Q Consensus 1278 dg~~LasgS~D-----g~I~Iwd~~g~~l~~l~~ 1306 (1344)
++.+++.|+.+ +.|.+||...+.-..+..
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 56777777654 467888876655544433
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.68 Score=60.66 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhcc-CCCHHHHHHHHHHHhhhccc
Q 000700 584 LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDI 662 (1344)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~ 662 (1344)
+.+.|-..-. -.+|++++++-+|||+|+--..+ +=+.....|...++ .++|.||+=+|++||-|.=.
T Consensus 924 v~e~c~n~~~-------~sdp~Lq~AAtLaL~klM~iSa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 924 VVEGCRNPGL-------FSDPELQAAATLALGKLMCISAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHhcCCCc-------CCCHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhh
Q 000700 663 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~ 718 (1344)
..+.... ....|...+.|.+++||+.++..+++++..
T Consensus 992 fpnlie~-------------------~T~~Ly~rL~D~~~~vRkta~lvlshLILn 1028 (1251)
T KOG0414|consen 992 FPNLIEP-------------------WTEHLYRRLRDESPSVRKTALLVLSHLILN 1028 (1251)
T ss_pred cccccch-------------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHh
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.1 Score=53.62 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchh
Q 000700 556 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA 635 (1344)
Q Consensus 556 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~ 635 (1344)
-.|...|=||+.++-..|+ .++..+-..+. .+.|-.|.-++-+.--.+.+.+.--..-+... ..
T Consensus 947 gtR~vvAECLGkL~l~epe--------sLlpkL~~~~~-------S~a~~~rs~vvsavKfsisd~p~~id~~lk~~-ig 1010 (1233)
T KOG1824|consen 947 GTRNVVAECLGKLVLIEPE--------SLLPKLKLLLR-------SEASNTRSSVVSAVKFSISDQPQPIDPLLKQQ-IG 1010 (1233)
T ss_pred hhHHHHHHHhhhHHhCChH--------HHHHHHHHHhc-------CCCcchhhhhhheeeeeecCCCCccCHHHHHH-HH
Confidence 4688888899888744443 34555555565 67788888887777766666443222222222 34
Q ss_pred hHhhhccCCCHHHHHHHHHHHhhhcccC
Q 000700 636 IYVPLLSEPQPEVRASAVFSLGTLLDIG 663 (1344)
Q Consensus 636 ~l~~ll~D~sP~VRaa~v~aL~~~i~~~ 663 (1344)
.++.++.||.++||.+++.+|.+++.+.
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 7899999999999999999999999543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.6 Score=52.68 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=71.2
Q ss_pred hhhhccCCCCchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchH
Q 000700 544 FIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTE 623 (1344)
Q Consensus 544 f~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~ 623 (1344)
|..+|......+..|.++|=.++.+++.||. +...+++..+.+.+ |.+..+|.+++=.|-.|+.+.++
T Consensus 25 y~~il~~~kg~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcE-------Ded~~iR~~aik~lp~~ck~~~~ 92 (556)
T PF05918_consen 25 YKEILDGVKGSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCE-------DEDVQIRKQAIKGLPQLCKDNPE 92 (556)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--------SSHHHHHHHHHHGGGG--T--T
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHh-------cccHHHHHHHHHhHHHHHHhHHH
Confidence 3444443334578999999999999999999 56678888899998 88999999999999999988543
Q ss_pred HHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 624 AQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 624 ~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
- -..++..|..||.-..|..+.++=-+|-+++
T Consensus 93 ~-----v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 93 H-----VSKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp ------HHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred H-----HhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 1234567888998888888888877777776
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=87.84 E-value=66 Score=38.18 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=44.9
Q ss_pred cceEEEecCCCCeEEEEEcC-------CCCEEEEEeCCCeEEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000700 1258 DAYLTIDAHRGSLSALAVHR-------HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1258 ~~v~tl~~h~~~Vtsla~sp-------dg~~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~ 1329 (1344)
.++..+..| ..++.+.|.. ++.++++.-..+.|....++ +..+.. +..+.......+..+++.|||.
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE----EEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE----EEEECTTSSS-EEEEEEETTSE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc----eEEccccCCCCceEEEEcCCCe
Confidence 355556555 4567777764 34466665555677766643 322221 1222333345899999999999
Q ss_pred EEEEEECCCeEE
Q 000700 1330 LLAAGSADACVS 1341 (1344)
Q Consensus 1330 ~Lasgs~Dg~I~ 1341 (1344)
++++.+.+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 988888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.8 Score=51.22 Aligned_cols=120 Identities=19% Similarity=0.133 Sum_probs=81.0
Q ss_pred HHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccC
Q 000700 564 VLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSE 643 (1344)
Q Consensus 564 iLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D 643 (1344)
.......+.|+|-. +=.+.+..++.-+. .++--||.=+|=.|+.+.+...+.... +-....++|..-+-|
T Consensus 74 f~~Y~~~~dpeg~~--~V~~~~~h~lRg~e-------skdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~D 143 (885)
T COG5218 74 FFEYDMPDDPEGEE--LVAGTFYHLLRGTE-------SKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFD 143 (885)
T ss_pred HHHhcCCCChhhhH--HHHHHHHHHHhccc-------CcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhc
Confidence 33445577788722 34455555566666 678889999999999998776553332 223344577777789
Q ss_pred CCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHh-hccCCChhhHHHHHHHH
Q 000700 644 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLT-VVSDGSPLVRAEVAVAL 712 (1344)
Q Consensus 644 ~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~-~~~D~sp~VR~e~~~~l 712 (1344)
.-|-||.++|++|..|-+- +. ..|..++..++. +-+|+|.+||+.+..-+
T Consensus 144 RE~~VR~eAv~~L~~~Qe~------------~~-------neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 144 REKAVRREAVKVLCYYQEM------------EL-------NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred chHHHHHHHHHHHHHHHhc------------cC-------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 9999999999999999622 11 113444444444 45899999999887544
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=87.49 E-value=40 Score=38.36 Aligned_cols=148 Identities=15% Similarity=0.129 Sum_probs=85.9
Q ss_pred CeeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEE-
Q 000700 1177 SISALTASQVHGGQLAAGF---VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLD- 1252 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs---~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWD- 1252 (1344)
.+.+. ..+++++.++... ....++++...... .... . ...++.-.|+++ +...+....+...+++.
T Consensus 25 ~~~s~-AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---~--g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSP-AVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---T--GGSLTRPSWDPD--GWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccce-EECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---c--CCccccccccCC--CCEEEEEcCCCceEEEEe
Confidence 36677 6778888776655 23345554433222 2211 1 146788899998 88887777777777774
Q ss_pred CCCCccceEEEecC--CCCeEEEEEcCCCCEEEEEe---CCCeEEEEeC----CCceEEEEeccCCccccccCCCeEEEE
Q 000700 1253 IRNHKDAYLTIDAH--RGSLSALAVHRHAPIIASGS---AKQLIKVFSL----EGEQLGTIRYHHPSFMAQKIGSVNCLT 1323 (1344)
Q Consensus 1253 lr~~~~~v~tl~~h--~~~Vtsla~spdg~~LasgS---~Dg~I~Iwd~----~g~~l~~l~~~h~~f~~~~~~~V~sla 1323 (1344)
...+......+... .+.|+.+.++|||..+|... .++.|.|--+ .|. ...+.. -..........+.+++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~-~~~l~~-~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV-PRRLTG-PRRVAPPLLSDVTDVA 172 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC-cceecc-ceEecccccCcceeee
Confidence 23322222222222 12799999999999776654 3577776652 231 111111 0001112236899999
Q ss_pred EecCCCEEEEEEC
Q 000700 1324 FHPYQVLLAAGSA 1336 (1344)
Q Consensus 1324 fspdg~~Lasgs~ 1336 (1344)
|.+++.+++.+..
T Consensus 173 W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 173 WSDDSTLVVLGRS 185 (253)
T ss_pred ecCCCEEEEEeCC
Confidence 9999987777655
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.38 E-value=53 Score=36.54 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCE-EEEEECCCeEEEEE--CCCCCe----eeEeecCCCC-CCCCeEEEEEecCCCCCEEEEEECCCcEEE
Q 000700 1179 SALTASQVHGGQ-LAAGFVDGSVRLYD--VRTPDM----LVCSTRPHTQ-QVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1179 tsL~~~s~dg~~-L~sGs~DGsVrIwD--lr~~~~----~v~~~~~~~~-h~~~I~sva~sp~~~g~~Lasgs~DG~I~I 1250 (1344)
..++| +.+.+. .++-+.+-+|.-|| ..++.. .+..++..+. ..-.--.+++.-+ |.+.++.-..|+|.-
T Consensus 161 Ngl~W-d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAW-DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQK 237 (310)
T ss_pred ccccc-cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEE
Confidence 34533 344444 45566677887787 333321 1111111100 0011223445545 888888888999999
Q ss_pred EECCCCccceEEEecCCCCeEEEEEcC
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHR 1277 (1344)
Q Consensus 1251 WDlr~~~~~v~tl~~h~~~Vtsla~sp 1277 (1344)
.|..++ +.+.++.-....|+|++|--
T Consensus 238 ~dp~tG-K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTG-KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCCCC-cEEEEEEcCCCceEEEEecC
Confidence 999998 88999988888999999964
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.34 E-value=81 Score=38.66 Aligned_cols=148 Identities=10% Similarity=0.040 Sum_probs=82.9
Q ss_pred CCEEEEEECCCcEEEEECCCCc-----EEEEeeCCCCCCCCeEEEEEE---eeCCCCEEEEEECCCeEEEEeccCCCCc-
Q 000700 1043 SPIVVAADENERIKIWNYEEDT-----LLNSFDNHDFPDKGISKLCLV---NELDVSLLLVASCNGNIRIWKDYDQKDK- 1113 (1344)
Q Consensus 1043 g~~Latgs~dg~I~VWd~~tg~-----~l~~~~~h~~~~~~ItsL~f~---ns~d~~~L~tgs~DG~IrIWdl~~~~~~- 1113 (1344)
.+.|++|+..|.++||+...+. .+-..+.. .+|-.+..- ...+...|++ =.-..+.||.+....+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~----~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK----DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC----CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 3599999999999999986432 22222222 477777652 1122334444 45567888888443332
Q ss_pred -----eeEEeeeecccCCCCCccccceEEEEecC-----CCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1114 -----QKLVTAFSSIQGHKPGVRCSNVVVDWQQQ-----SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1114 -----~~lvs~~~~l~~h~~~V~s~~~~v~ws~~-----~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
.++. .+..|.-.-.. +.+++-+- ...+.+-+.||.+.+|+-+... ....++..-- -..+ .
T Consensus 112 ~~g~~~~L~----~~yeh~l~~~a--~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~~ll--PgPl-~ 181 (418)
T PF14727_consen 112 EHGNQYQLE----LIYEHSLQRTA--YNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPDFLL--PGPL-C 181 (418)
T ss_pred ccCcEEEEE----EEEEEecccce--eEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCCCCC--CcCe-E
Confidence 2221 12223222221 12333222 2456666899999999987655 4444443111 1223 2
Q ss_pred EcCCCCEEEEEECCCeEEEEEC
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDV 1205 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDl 1205 (1344)
+.+..+.|++++.+..+..|..
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EeecCCEEEEecCceeEEEecH
Confidence 3345678888888888888865
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=6.5 Score=49.16 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHH---hcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhcc
Q 000700 555 PEQRAMAAFVLAVI---VDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRA 631 (1344)
Q Consensus 555 ~~~r~~~afiLa~l---~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~ 631 (1344)
..+++-+|.|+=.+ +.-.+.| --+..+...++.+|. +|+-.+.-...=+|-.|.-+|..-|...++.
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg---~~~~dv~~plvqll~-------dp~~~i~~~~lgai~NlVmefs~~kskfl~~ 460 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTG---LKRNDVAQPLVQLLM-------DPEIMIMGITLGAICNLVMEFSNLKSKFLRN 460 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CccchhHHHHHHHhh-------CcchhHHHHHHHHHHHHHhhcccHHHHHHHc
Confidence 35566555555333 3223333 225567778888887 7888888888888888888898999999999
Q ss_pred CchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHH-HHHhhccCCChhhHHHHHH
Q 000700 632 DAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIR-SLLTVVSDGSPLVRAEVAV 710 (1344)
Q Consensus 632 ~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ll~~~~D~sp~VR~e~~~ 710 (1344)
+..+++..++.|+.+-+|+-.+.+|-++. .+.++.+..+....+-+ .++.+.+|+.+.|-+...-
T Consensus 461 ngId~l~s~~~~~~~n~r~~~~~~Lr~l~--------------f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fq 526 (678)
T KOG1293|consen 461 NGIDILESMLTDPDFNSRANSLWVLRHLM--------------FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQ 526 (678)
T ss_pred CcHHHHHHHhcCCCchHHHHHHHHHHHHH--------------hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999998 22333333444445544 4566789999999999988
Q ss_pred HHHHHHhh
Q 000700 711 ALARFAFG 718 (1344)
Q Consensus 711 ~ls~~~~~ 718 (1344)
.+.-+...
T Consensus 527 llRNl~c~ 534 (678)
T KOG1293|consen 527 LLRNLTCN 534 (678)
T ss_pred HHHHhhcC
Confidence 88776654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=87.07 E-value=90 Score=41.39 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=66.6
Q ss_pred CCeEEEEECCCeEEEEECCCCceeeeeecCCCCC-------CeeEEEEEc---------------CCCCEEEEEECCCeE
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC-------SISALTASQ---------------VHGGQLAAGFVDGSV 1200 (1344)
Q Consensus 1143 ~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~-------~VtsL~~~s---------------~dg~~L~sGs~DGsV 1200 (1344)
++.+++++.++.|.-.|..+++ .+-.+...... ....+..+. ..+..++.++.||.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk-~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK-EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc-EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 6677777777888888888877 55554432110 011222222 134578889999999
Q ss_pred EEEECCCCCeeeEeecCC---------CCCCCCeEEEEEecCCCCCEEEEEEC----------CCcEEEEECCCCccceE
Q 000700 1201 RLYDVRTPDMLVCSTRPH---------TQQVERVVGISFQPGLDPAKIVSASQ----------AGDIQFLDIRNHKDAYL 1261 (1344)
Q Consensus 1201 rIwDlr~~~~~v~~~~~~---------~~h~~~I~sva~sp~~~g~~Lasgs~----------DG~I~IWDlr~~~~~v~ 1261 (1344)
.-.|.++++.+.. +... ......-..+.-.|-..+..+++|+. +|.|+-+|.+++ +.+-
T Consensus 273 iALDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG-kl~W 350 (764)
T TIGR03074 273 IALDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG-ALVW 350 (764)
T ss_pred EEEECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC-cEee
Confidence 9999999984432 2110 00000000111111111345666643 688999999998 5555
Q ss_pred EEe
Q 000700 1262 TID 1264 (1344)
Q Consensus 1262 tl~ 1264 (1344)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=86.81 E-value=0.98 Score=35.84 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=33.7
Q ss_pred hHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhc
Q 000700 622 TEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
++.+...++.++...|+.+|++++++||.+++.||+.+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345556688899999999999999999999999999874
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=86.26 E-value=68 Score=36.67 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred EEEecCCCeEEEEECCC--eEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEe
Q 000700 1137 VDWQQQSGYLYASGEVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS 1214 (1344)
Q Consensus 1137 v~ws~~~~~Llagg~Dg--~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~ 1214 (1344)
+.|..++..+-++|.-| .|+.+|+.+++ ......-.....--.++.. ++.+..-.-.+|...+||..+-+ .+..
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-~~~~ 125 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-KIGT 125 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE-EEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce-EEEE
Confidence 55543444445556444 79999999998 6655544333223334333 45566666788999999999876 4444
Q ss_pred ecCCCCCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCccceEEEecCC-----CCeEEEEEcCCCCEEEEEeCCC
Q 000700 1215 TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHR-----GSLSALAVHRHAPIIASGSAKQ 1289 (1344)
Q Consensus 1215 ~~~~~~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~~~v~tl~~h~-----~~Vtsla~spdg~~LasgS~Dg 1289 (1344)
+ ... +.=..++ .+ +..|+.......+.++|..+. +...++.... ..++-+.+. +|.+.|=.=...
T Consensus 126 ~-~y~---~EGWGLt--~d--g~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 F-PYP---GEGWGLT--SD--GKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp E-E-S---SS--EEE--EC--SSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred E-ecC---CcceEEE--cC--CCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 4 222 2223444 33 666776666778999999877 5666665432 245566666 566666555556
Q ss_pred eEEEEe-CCCceEEEEeccCCccc---------cccCCCeEEEEEecCCCEEEEEE
Q 000700 1290 LIKVFS-LEGEQLGTIRYHHPSFM---------AQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1290 ~I~Iwd-~~g~~l~~l~~~h~~f~---------~~~~~~V~slafspdg~~Lasgs 1335 (1344)
.|...| .+|+....+.. . +.. .......+.+||+|....|...|
T Consensus 196 ~I~~Idp~tG~V~~~iDl-s-~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDL-S-GLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE--H-HHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEh-h-HhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 677777 56777666542 1 110 01246789999998876555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.17 E-value=86 Score=37.77 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCeEEEEEEeeCCCCEEEEEE-----------CCC-eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCC
Q 000700 1077 KGISKLCLVNELDVSLLLVAS-----------CNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~L~tgs-----------~DG-~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
.....|+| .++|.++++-. ..+ .|.+++.....+.....+. +......... +++.+++
T Consensus 14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v---fa~~l~~p~G----i~~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV---FAEELSMVTG----LAVAVGG- 83 (367)
T ss_pred CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE---eecCCCCccc----eeEecCC-
Confidence 45567888 67777766642 123 6777765443444332211 2222222334 6666555
Q ss_pred eEEEEECCCeEEEEECCCC-----c-e-eeeeecCC---CCCCeeEEEEEcCCCCEEEEEECC-----------------
Q 000700 1145 YLYASGEVSSIMLWDLEKE-----Q-Q-MVNPIPSS---SDCSISALTASQVHGGQLAAGFVD----------------- 1197 (1344)
Q Consensus 1145 ~Llagg~Dg~I~VWDl~~~-----~-~-~v~~i~~~---~~~~VtsL~~~s~dg~~L~sGs~D----------------- 1197 (1344)
++++......++.|.... + + .+..+... .......+ .+.++|.+.++-+..
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l-~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL-AWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc-eECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 666665554445455321 1 0 12223321 11225566 567788776654421
Q ss_pred --CeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecCCCCCEEEEEECC
Q 000700 1198 --GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1198 --GsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~~~g~~Lasgs~D 1245 (1344)
|.|.-+|....+ ...+ . .++ .....++|++. |+++++-..+
T Consensus 162 ~~g~i~r~~pdg~~--~e~~-a-~G~-rnp~Gl~~d~~--G~l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGK--LRVV-A-HGF-QNPYGHSVDSW--GDVFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCe--EEEE-e-cCc-CCCccceECCC--CCEEEEccCC
Confidence 445555555443 1222 1 121 34568999998 8887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.14 E-value=50 Score=39.85 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=69.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC--cEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1036 TALLQPFSPIVVAADENERIKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1036 ~l~fspdg~~Latgs~dg~I~VWd~~tg--~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
.+-|....+.|.+. ..|.+.=|-.+.. ...-.+.... .+.|.++.| ++|.+.|++--.+..|.+++....+..
T Consensus 27 gvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d--~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 27 GVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDD--KGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecC--CCceeEEEe--ccCcceEEEEecCceEEEEecCCCchh
Confidence 34444434443333 3555666654421 2222333222 268999999 899999999999999999987442222
Q ss_pred eeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEE
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISAL 1181 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL 1181 (1344)
.+.. ..-+.....|.+ ..|... ..++...+.| +-+|-...+.+.++..+.+.-. |.-.
T Consensus 102 l~~~---~~ck~k~~~IlG----F~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~n-vnWy 159 (657)
T KOG2377|consen 102 LEYT---QECKTKNANILG----FCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLN-VNWY 159 (657)
T ss_pred hHHH---HHhccCcceeEE----EEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccC-ccEE
Confidence 2211 111112223444 788754 5555555555 6666555444234444444333 4444
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.04 E-value=71 Score=36.73 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeCCCCEEEEEECCCeEEEEeccCCCCc
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1034 I~~l~fspdg~~Latgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~ 1113 (1344)
+..+.++ +++...+..+..++|.|+.+...-..+..-+ ....++.+.-.|++..++..|.-+-+.|+.+. .+
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-----t~gyaygv~vsGn~aYVadlddgfLivdvsdp-ss 160 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP-SS 160 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-----CCceEEEEEecCCEEEEeeccCcEEEEECCCC-CC
Confidence 4455554 4577778888889999987654333222222 11223333447899999986666778898763 33
Q ss_pred eeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEEEcCCCCEEEE
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAA 1193 (1344)
Q Consensus 1114 ~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~~s~dg~~L~s 1193 (1344)
+.+... +......... ++. .|++-+++..|+-+.+-|+.....++..-.-..+..+.++ +.+++..+++.
T Consensus 161 P~lagr---ya~~~~d~~~----v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv-~vsdnr~y~vv 230 (370)
T COG5276 161 PQLAGR---YALPGGDTHD----VAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV-SVSDNRAYLVV 230 (370)
T ss_pred ceeeee---eccCCCCcee----EEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE-EecCCeeEEEE
Confidence 344311 1111111122 333 3778888888888999998866522221111122236777 44444333333
Q ss_pred EECCCeEEEEECCCCCeeeEeecCCC-CCCCCeEEEEEecCCCCCEEEEEECCCcEEEEECCCCc
Q 000700 1194 GFVDGSVRLYDVRTPDMLVCSTRPHT-QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK 1257 (1344)
Q Consensus 1194 Gs~DGsVrIwDlr~~~~~v~~~~~~~-~h~~~I~sva~sp~~~g~~Lasgs~DG~I~IWDlr~~~ 1257 (1344)
.+--+.+-|....+.. ..+...+ .....++.+.++ +++......+.-+.+-|+.+..
T Consensus 231 --y~egvlivd~s~~ssp-~~~gsyet~~p~~~s~v~Vs----~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 231 --YDEGVLIVDVSGPSSP-TVFGSYETSNPVSISTVPVS----GEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred --cccceEEEecCCCCCc-eEeeccccCCcccccceecc----cceeeeeccccCceeEeccCCC
Confidence 3444667777766522 2221111 111223333443 5677777777778888887653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.59 E-value=96 Score=37.79 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=111.8
Q ss_pred eeCCCCEEEEE-ECCC----eEEEEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEEC---------
Q 000700 1086 NELDVSLLLVA-SCNG----NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--------- 1151 (1344)
Q Consensus 1086 ns~d~~~L~tg-s~DG----~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~--------- 1151 (1344)
.++++++++.+ +..| .++++|+.+ ++. +... +.. +.. ..+.|.+++..++....
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--g~~-l~d~---i~~----~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLET--GKF-LPDG---IEN----PKF--SSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTT--TEE-EEEE---EEE----EES--EEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCC--CcC-cCCc---ccc----ccc--ceEEEeCCCCEEEEEEeCcccccccC
Confidence 38999988866 3333 599999976 321 1111 111 111 12899999888777642
Q ss_pred --CCeEEEEECCCCcee-eeeecCCCCCC-eeEEEEEcCCCCEEEEEECC----CeEEEEECCCC----CeeeEeecCCC
Q 000700 1152 --VSSIMLWDLEKEQQM-VNPIPSSSDCS-ISALTASQVHGGQLAAGFVD----GSVRLYDVRTP----DMLVCSTRPHT 1219 (1344)
Q Consensus 1152 --Dg~I~VWDl~~~~~~-v~~i~~~~~~~-VtsL~~~s~dg~~L~sGs~D----GsVrIwDlr~~----~~~v~~~~~~~ 1219 (1344)
...|+.|.+.+.... ...+....... ...+ ..+.++++++..... ..+.+.|.... ..........
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~- 276 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-SRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE- 276 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-EE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-EecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-
Confidence 224788888776511 23444433332 4556 567888887764443 34788888764 1122222112
Q ss_pred CCCCCeE-EEEEecCCCCCEEEEEE---CCCcEEEEECCCCcc--ceEEEecCCCCeEEEEEcCCCC-EEEEEeCCC--e
Q 000700 1220 QQVERVV-GISFQPGLDPAKIVSAS---QAGDIQFLDIRNHKD--AYLTIDAHRGSLSALAVHRHAP-IIASGSAKQ--L 1290 (1344)
Q Consensus 1220 ~h~~~I~-sva~sp~~~g~~Lasgs---~DG~I~IWDlr~~~~--~v~tl~~h~~~Vtsla~spdg~-~LasgS~Dg--~ 1290 (1344)
..+. .+... + +.+++... .++.|.-.++..... -...+-.+...+.-..+...+. +++....++ .
T Consensus 277 ---~~~~~~v~~~-~--~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 277 ---DGVEYYVDHH-G--DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp ---SS-EEEEEEE-T--TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred ---CceEEEEEcc-C--CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 2333 33333 3 44544443 246677788887631 1235555555433333333444 444444444 5
Q ss_pred EEEEeCC-CceEEEEeccCCccccccCCCeEEEEEecCCC
Q 000700 1291 IKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQV 1329 (1344)
Q Consensus 1291 I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~ 1329 (1344)
|++++.. +.....+.. .. .+.|..+...+++.
T Consensus 351 l~v~~~~~~~~~~~~~~-p~------~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 351 LRVYDLDDGKESREIPL-PE------AGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEETT-TEEEEEEES-SS------SSEEEEEES-TT-S
T ss_pred EEEEECCCCcEEeeecC-Cc------ceEEeccCCCCCCC
Confidence 7889988 777777665 22 24556665555553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis) | Back alignment and domain information |
|---|
Probab=85.57 E-value=5.5 Score=45.08 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcccccceeccCCCHHHHHHHHHHhhc-cC-CCceEEEEEcCCCCCCCCCCceEEEeCccccccHHHHHh
Q 000700 150 GKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTCRR-YA-KGERVLFHYNGHGVPKPTANGEIWLFNKYIPLPISDLDS 227 (1344)
Q Consensus 150 ~~~l~~qy~~~~~~~~~~~~~~p~~~~~~~~~~~~r~-~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~y~p~~~~~l~~ 227 (1344)
.+.|..-++.+.- ......|++.+++++.+..+.+ +. ..+=++|-|-|||.- |.|+--|. .++++.||.+
T Consensus 34 ~~~l~~~f~~lgF--~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~-----~~l~~~D~-~~v~l~~i~~ 105 (243)
T cd00032 34 AENLTKLFESLGY--EVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE-----GGIYGTDG-DVVPIDEITS 105 (243)
T ss_pred HHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC-----CEEEEecC-cEEEHHHHHH
Confidence 4555555655433 4567899999999999888774 33 445578889999963 77887774 5667888876
Q ss_pred hc---------CCCeEEEEeCCchhh
Q 000700 228 WL---------KTPSIYVFDCSAAGM 244 (1344)
Q Consensus 228 ~~---------~~p~~~v~dc~~ag~ 244 (1344)
.+ |.|-|||+|..-...
T Consensus 106 ~f~~~~~~sl~~kPKl~~iqACRg~~ 131 (243)
T cd00032 106 LFNGDNCPSLAGKPKLFFIQACRGDE 131 (243)
T ss_pred hhccCCCccccCCCcEEEEECCCCCc
Confidence 65 478899999876543
|
Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=84.99 E-value=13 Score=46.06 Aligned_cols=147 Identities=13% Similarity=0.191 Sum_probs=0.0
Q ss_pred CeeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCCeeeEeecCCCCCCCCeEEEEEecC--CCCCEEEEEECCCcEEEEE
Q 000700 1177 SISALTASQVHGGQLAAGF--VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--LDPAKIVSASQAGDIQFLD 1252 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs--~DGsVrIwDlr~~~~~v~~~~~~~~h~~~I~sva~sp~--~~g~~Lasgs~DG~I~IWD 1252 (1344)
+|..+ +|....+.+++.- .+|.+++=|-+ .+..+ ..|.++.|.|- .+...+........|.+|.
T Consensus 21 PvhGl-aWTDGkqVvLT~L~l~~gE~kfGds~----viGqF-------EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 21 PVHGL-AWTDGKQVVLTDLQLHNGEPKFGDSK----VIGQF-------EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred cccce-EecCCCEEEEEeeeeeCCccccCCcc----Eeecc-------ceeeeeeecCcccCCCCceEEEeccceEEEEE
Q ss_pred CC--CCccceEEEecCCCCe--------EEEEEcCCCCEEEEEeCCCeEEEEe--CCCceEEEEeccCCccccccCCCeE
Q 000700 1253 IR--NHKDAYLTIDAHRGSL--------SALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYHHPSFMAQKIGSVN 1320 (1344)
Q Consensus 1253 lr--~~~~~v~tl~~h~~~V--------tsla~spdg~~LasgS~Dg~I~Iwd--~~g~~l~~l~~~h~~f~~~~~~~V~ 1320 (1344)
+. .. +.-+-+......| .++.|||...+|+.-+....-.+++ .++..+..--. .. +.|.
T Consensus 89 L~~s~~-e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~-------G~Ih 159 (671)
T PF15390_consen 89 LCPSTT-ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TS-------GLIH 159 (671)
T ss_pred eccCcc-ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CC-------ceEE
Q ss_pred EEEEecCC-CEEEEEECCCeEEEcC
Q 000700 1321 CLTFHPYQ-VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1321 slafspdg-~~Lasgs~Dg~I~IWd 1344 (1344)
|.+|.+|| +++++.++.=+-+|||
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEec
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.60 E-value=14 Score=44.84 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=89.9
Q ss_pred eEEEEEcC-CCCEEE-EEECCCcEEEEECCCCcEEEEeeCCCCCCCCeEEEEEEeeC--------CCCEEEEEECCCeEE
Q 000700 1034 TKTALLQP-FSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL--------DVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1034 I~~l~fsp-dg~~La-tgs~dg~I~VWd~~tg~~l~~~~~h~~~~~~ItsL~f~ns~--------d~~~L~tgs~DG~Ir 1103 (1344)
+..+-.+. +..+|. .|+....++--|++.|+.+..+..|. .+ -+.| .| +.+.|+--|..+..|
T Consensus 469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~d----dv-vVqy--~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD----DV-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCC----cc-eeec--CCchhHHhcCccceEEeecccceEE
Confidence 33444443 444433 45566677777999999999999887 33 4455 23 234455555555444
Q ss_pred EEeccCCCCceeEEeeeecccCCCCCccccceEEEEecCCCeEEEEECCCeEEEEECCCCceeeeeecCCCCCCeeEEEE
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1104 IWdl~~~~~~~~lvs~~~~l~~h~~~V~s~~~~v~ws~~~~~Llagg~Dg~I~VWDl~~~~~~v~~i~~~~~~~VtsL~~ 1183 (1344)
| |......+.... ..+.+.+... .. ..-...+|++++++..|.|++||.-... ....+++-... |..+ -
T Consensus 542 I-DPR~~gNKi~v~-esKdY~tKn~-Fs-----s~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~a-Ik~i-d 610 (776)
T COG5167 542 I-DPRARGNKIKVV-ESKDYKTKNK-FS-----SGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDA-IKHI-D 610 (776)
T ss_pred e-cccccCCceeee-eehhcccccc-cc-----ccccccCceEEEecCCCceeeehhhcch-hhhcCcccccc-eeee-E
Confidence 4 554422222221 1122221111 11 1122368999999999999999976554 44455554444 8888 4
Q ss_pred EcCCCCEEEEEECCCeEEEEECC
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVR 1206 (1344)
Q Consensus 1184 ~s~dg~~L~sGs~DGsVrIwDlr 1206 (1344)
...+|..+++.|.. .+.+-|++
T Consensus 611 vta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecc-eEEEEecc
Confidence 56688888877754 67777775
|
|
| >PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.8 Score=49.34 Aligned_cols=94 Identities=18% Similarity=0.318 Sum_probs=60.4
Q ss_pred cCCCceEEEEEcCCCCCCCCCCceEEEeCccccccHHHHHhhcC--------CCeEEEEeCCchhhHHHHHHhhcccCCC
Q 000700 187 YAKGERVLFHYNGHGVPKPTANGEIWLFNKYIPLPISDLDSWLK--------TPSIYVFDCSAAGMIVNAFIELHDWGAS 258 (1344)
Q Consensus 187 ~~~~~r~lfhy~ghg~p~pt~~g~i~~~~~y~p~~~~~l~~~~~--------~p~~~v~dc~~ag~~~~~~~~~~~~~~~ 258 (1344)
.-++++|++.|.|||-|. +..|...-.|+-.||..++. ...++|.|+..||.+++.+.+
T Consensus 103 s~~~D~vfiy~~~HG~~~------~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~~L~~------- 169 (256)
T PF01650_consen 103 STENDNVFIYFTGHGGPG------FLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFEGLLK------- 169 (256)
T ss_pred CCCCCeEEEEEeccCCCC------cccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhhccCC-------
Confidence 458889999999999987 33333333455666666554 456999999999999888322
Q ss_pred CCCCCCcceEEEEecCCcCCCCCCCCCCchhhhhcccchHH
Q 000700 259 NYSGSTRDCILLAACEAHETLPQSEEFPADVFTSCLTTPIT 299 (1344)
Q Consensus 259 ~~~~~~~~~~~~~ac~~~e~lp~~~~lp~d~ftscl~tP~~ 299 (1344)
..+.+++.|+.++|.==..-. +.+-...||..-.-
T Consensus 170 -----~~nv~~iTAa~~~e~Sy~~~~-~~~~~~~~l~d~fs 204 (256)
T PF01650_consen 170 -----SPNVYVITAANADESSYGCYC-SDDSIGTYLGDAFS 204 (256)
T ss_pred -----CCCEEEEecCCcccccccccc-cccccccEeHHHHH
Confidence 246677788777775221111 34444556654433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.54 E-value=4.2 Score=50.62 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=66.2
Q ss_pred HHHHhcCCcchhHHHHhhc----hHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhh
Q 000700 565 LAVIVDGHRRGQEACIEAG----LIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPL 640 (1344)
Q Consensus 565 La~l~~~~~~gq~~~~~~~----~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~l 640 (1344)
|.+||+|-.+--..-+..+ ++.+++++.+ .++|-+|.-++-|+-+++-...++-...++.. .+.+..+
T Consensus 152 L~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~-------h~spkiRs~A~~cvNq~i~~~~qal~~~iD~F-le~lFal 223 (885)
T KOG2023|consen 152 LQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK-------HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKF-LEILFAL 223 (885)
T ss_pred HHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh-------CCChhHHHHHHhhhhheeecCcHHHHHHHHHH-HHHHHHH
Confidence 5666666433211111122 2345666677 78999999999999999987666655555443 4478888
Q ss_pred ccCCCHHHHHHHHHHHhhhcccCcC
Q 000700 641 LSEPQPEVRASAVFSLGTLLDIGFD 665 (1344)
Q Consensus 641 l~D~sP~VRaa~v~aL~~~i~~~~~ 665 (1344)
-+|.+||||+-++-+|..++..+.+
T Consensus 224 anD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 224 ANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 8999999999999999999966544
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.51 E-value=14 Score=48.29 Aligned_cols=347 Identities=16% Similarity=0.155 Sum_probs=179.7
Q ss_pred chhhHHHHHHHHHHHHhhccCCHHHHHHhhhhh--hHHHHHHHHHH-HHHHhhhccCcccccCCCCCCCCCCchhhhHHH
Q 000700 333 LLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQD--LLVASLFRNFL-LAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 409 (1344)
Q Consensus 333 ~l~el~~i~~ai~d~ia~~~lp~~~f~~lfr~d--~~va~lfrnfl-la~ri~~~~~~~p~s~P~lp~~~~h~lW~~wd~ 409 (1344)
.+|++...+.- ++.++.+. ++|+.|-+-| .+....+-.+. +++-++..-.+.=...|.+=....-+.|..--+
T Consensus 260 ~l~~~a~~~~~---~~~~s~v~-~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~ 335 (759)
T KOG0211|consen 260 NLGNIAKVLES---EIVKSEVL-PTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYM 335 (759)
T ss_pred hhHHHHHHHHH---HHHHhhcc-HHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHH
Confidence 45555544443 56665553 4666665543 33322222222 222222221111122233333456777888777
Q ss_pred HHHHHHhcCccccCCCCCCcCCCcchHHhHhh---------------hHHHhcCCCCCCCC-CCchhhHHHHhhchhhHH
Q 000700 410 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTA---------------FEVWLDHGSEHKKP-PEQLPIVLQVLLSQCHRF 473 (1344)
Q Consensus 410 ~~d~~l~ql~~~~~~~~~~~~~~~ff~~~Lta---------------fe~~L~~g~~~~~~-p~~lP~vLq~LlS~~~rl 473 (1344)
+.|.+.. |-..+...-+..+....|.+++.- |+-++...+-..-+ -.+||++-.+..+.+.+.
T Consensus 336 ~~~~~~~-L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 336 VADKFSE-LSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred Hhhhhhh-HHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH
Confidence 7776652 322222212223344455554421 44444422211101 136888877777777777
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHhcCchhhhHHhccCCchhhhhHHHHHHHHHhccChhhhhhhhhcCCchhhhhhccCCC
Q 000700 474 RALVLLGRFL-DMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSME 552 (1344)
Q Consensus 474 ral~ll~~fl-d~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~ 552 (1344)
|+... -++ -+.|-.-.--.-.-..|-++.+|++-.++.|-=+.=+++.+..+....-.+.+++.... .|....
T Consensus 415 r~a~a--~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp----~i~el~ 488 (759)
T KOG0211|consen 415 RSALA--SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP----AIVELA 488 (759)
T ss_pred HHHHh--ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh----hhhhhc
Confidence 76653 111 11110000000011256777777766556553332222555544433333333322211 111111
Q ss_pred CchHHHHHHHHHHHHHhcCCcchhHHHHhhchHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhhccchHHHHhhhccC
Q 000700 553 AYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRAD 632 (1344)
Q Consensus 553 ~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~ 632 (1344)
.....|.-.+|+-.+=+.-...|+. -+...+-..|..-|. +-+-++|..++..|..+...+. .+|. ...
T Consensus 489 ~d~~wRvr~ail~~ip~la~q~~~~-~~~~~~~~l~~~~l~-------d~v~~Ir~~aa~~l~~l~~~~G-~~w~--~~~ 557 (759)
T KOG0211|consen 489 EDLLWRVRLAILEYIPQLALQLGVE-FFDEKLAELLRTWLP-------DHVYSIREAAARNLPALVETFG-SEWA--RLE 557 (759)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhH-HhhHHHHHHHHhhhh-------hhHHHHHHHHHHHhHHHHHHhC-cchh--HHH
Confidence 1123444444443332211122211 234445566777777 7788999999999999998876 5553 333
Q ss_pred chhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHH
Q 000700 633 APAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVAL 712 (1344)
Q Consensus 633 ~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l 712 (1344)
...+++.+..+++-.+|..+++++..|+..-+ .+.. ...+...+..+..|+.|+||--++..|
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g---------------~ei~--~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG---------------QEIT--CEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHhc---------------cHHH--HHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 44478888888899999999999998885421 1111 233455667789999999999999999
Q ss_pred HHHHhh
Q 000700 713 ARFAFG 718 (1344)
Q Consensus 713 s~~~~~ 718 (1344)
-.++..
T Consensus 621 ~~i~~~ 626 (759)
T KOG0211|consen 621 PKILKL 626 (759)
T ss_pred HHHHhh
Confidence 888744
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.4e+02 Score=39.81 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=104.7
Q ss_pred cccccCCCCCeEEEEEc---C--C--CCEEEEEECCCcEEEEECCCC---------------cEEEEeeCCCCCCCCeEE
Q 000700 1024 ACWDTRFEKGTKTALLQ---P--F--SPIVVAADENERIKIWNYEED---------------TLLNSFDNHDFPDKGISK 1081 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~~l~fs---p--d--g~~Latgs~dg~I~VWd~~tg---------------~~l~~~~~h~~~~~~Its 1081 (1344)
..|....+.+|..|+|. . + ..+|++=. ...+.|+..+-. ..+..+..+...+....+
T Consensus 72 ~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 72 GAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred ceeEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 45876788999999998 2 1 13555544 667777772111 344555555555678889
Q ss_pred EEEEeeCCCCEEEEEECCCeEEEEeccCCCCceeEEeeeecccCCCCCc------cccceEEEEecCCCeEEEEECCCeE
Q 000700 1082 LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGV------RCSNVVVDWQQQSGYLYASGEVSSI 1155 (1344)
Q Consensus 1082 L~f~ns~d~~~L~tgs~DG~IrIWdl~~~~~~~~lvs~~~~l~~h~~~V------~s~~~~v~ws~~~~~Llagg~Dg~I 1155 (1344)
++|. .-+...||+....|...||++....... ...++....+.+.+ .+.-.-+.|..+.+.|++++.. .+
T Consensus 151 v~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~~--~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l 226 (765)
T PF10214_consen 151 VAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKRK--SSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KL 226 (765)
T ss_pred EEec-cCccceEEEEeccCcEEEEEeccccccC--CcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ce
Confidence 9994 3466689999999999999992211110 01111111222222 1111237888777788877654 48
Q ss_pred EEEECCCCceeee-eecCCCCCCeeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000700 1156 MLWDLEKEQQMVN-PIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT 1207 (1344)
Q Consensus 1156 ~VWDl~~~~~~v~-~i~~~~~~~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~ 1207 (1344)
.++|+++.. ... .+.......|..+...+.+..++..- ....|...|+..
T Consensus 227 ~~~d~~~~~-~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 227 MLIDFESNW-QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred EEEECCCCC-ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 889999877 422 33333444588885444333333332 236788888887
|
These proteins are found in fungi. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.06 E-value=4.3 Score=48.25 Aligned_cols=154 Identities=10% Similarity=0.075 Sum_probs=88.3
Q ss_pred CeeEEEEEcCCCCEEEEEECCCeEEEEECCCCCeeeEeecCC-CC-CCCCeE-EEEEecCCCCCEEEEEECCCcEEEE-E
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPH-TQ-QVERVV-GISFQPGLDPAKIVSASQAGDIQFL-D 1252 (1344)
Q Consensus 1177 ~VtsL~~~s~dg~~L~sGs~DGsVrIwDlr~~~~~v~~~~~~-~~-h~~~I~-sva~sp~~~g~~Lasgs~DG~I~IW-D 1252 (1344)
.|..+ ...|+|+.+..-+. ..+.++++.+..-..+.+-.. .+ ....|+ .+..-. +|.-+.+++.||.|.-| |
T Consensus 222 ~v~ql-lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 222 DVSQL-LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred chHhh-EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEcCCCceeeeee
Confidence 36666 67899998887665 678888887654222211111 11 001122 111122 37788889999988766 7
Q ss_pred CCCCccc----eEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCceEEEEeccCCccccccCCCeEEEEEecCC
Q 000700 1253 IRNHKDA----YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1253 lr~~~~~----v~tl~~h~~~Vtsla~spdg~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
.+.++.+ ++.++-...++..+.-..+.+.+++-+.+|++.++....++..-+.. -...+.-+++||.+
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--------~~~~~~~~~~Sp~~ 369 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--------AYQAPQLVAMSPNQ 369 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--------hhcCcceeeeCccc
Confidence 7755432 22222223444444444455677777888888887743333222221 11356678999999
Q ss_pred CEEEEEECCCeEEEc
Q 000700 1329 VLLAAGSADACVSIH 1343 (1344)
Q Consensus 1329 ~~Lasgs~Dg~I~IW 1343 (1344)
.+|++-. .|.|+++
T Consensus 370 ~~Ll~e~-~gki~~~ 383 (733)
T COG4590 370 AYLLSED-QGKIRLA 383 (733)
T ss_pred chheeec-CCceEEE
Confidence 9888753 4566654
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.75 E-value=37 Score=45.56 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHhhccchHHHHhhhccCchhhHhhhccCCCHHHHHHHHHHHhhhcccCcCCCCCCCCCCCCCChH
Q 000700 601 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDD 680 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~ 680 (1344)
-..+.+++..+++++++..++...-.-..=..+.+.+.-.|...+|+||.+||=++..+|..-. +.
T Consensus 796 gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p--------------e~ 861 (1176)
T KOG1248|consen 796 GDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP--------------EE 861 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC--------------HH
Confidence 3468888888999999997654432222223334456667889999999999999999995421 11
Q ss_pred HHHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHhhccchHHHH
Q 000700 681 EKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHKQHLKSI 726 (1344)
Q Consensus 681 ~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~ls~~~~~~~~~f~~~ 726 (1344)
-.......+.-.++.+..|..-.||..+...+-+++..|.-..+..
T Consensus 862 ~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 1223345567778889999999999999999999998886655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1344 | ||||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-08 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-04 |
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1344 | ||||
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 4e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 |
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.4 bits (176), Expect = 3e-14
Identities = 38/235 (16%), Positives = 63/235 (26%), Gaps = 19/235 (8%)
Query: 471 HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKS 530
R AL LL + A D G+ V + L+ LR + +
Sbjct: 33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA 92
Query: 531 CQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLK 590
Q ++ G +R LD R A F ++ +V G + V
Sbjct: 93 IQEQVLGLGALRKLLRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL-- 149
Query: 591 HLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRA 650
M Q L L E + V L+
Sbjct: 150 -----MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204
Query: 651 SAVFSLGTLLDIGFDSCRDGVEGD-----------EECDDDEKIRAEISIIRSLL 694
+ +L +L+ R+ E + + E+ + E+ LL
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLL 259
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 4e-14
Identities = 43/317 (13%), Positives = 97/317 (30%), Gaps = 43/317 (13%)
Query: 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100
P ++V+A E+ IK+W+YE + H + ++ +
Sbjct: 27 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS----------------VQDISFDHS 70
Query: 1101 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1160
+ + G + V ++ ++ +I +W++
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1161 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML--------- 1211
+ + + G +A+ D +VR++ V T +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQ---DGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1212 -----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266
++ E + + G ++S S+ I+ D+ +T+ H
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGH 246
Query: 1267 RGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFH 1325
+ + H I S + + ++V+ + + T+ H V L FH
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--------HFVTSLDFH 298
Query: 1326 PYQVLLAAGSADACVSI 1342
+ GS D V +
Sbjct: 299 KTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 1e-07
Identities = 24/179 (13%), Positives = 62/179 (34%), Gaps = 29/179 (16%)
Query: 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--------- 1091
++ + ++ +++W H + IS + +S
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 1092 ------LLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY 1145
LL S + I++W L GH VR V + +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-------VGHDNWVRG----VLFHSGGKF 261
Query: 1146 LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYD 1204
+ + + ++ +WD + ++ M ++ + +++L + + G VD +V++++
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMK--TLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.1 bits (162), Expect = 5e-12
Identities = 54/321 (16%), Positives = 116/321 (36%), Gaps = 28/321 (8%)
Query: 1042 FSP--IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLL---LVA 1096
FS +A N+ +++ + +L+ + +K L + L +
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 1097 SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156
S +G D+ + + + + + + + + SG+ + +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VR 188
Query: 1157 LWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRT---PDMLVC 1213
+WDL Q + ++ S G +AAG +D +VR++D T + L
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTV---AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 1214 STRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAY-----------LT 1262
T + V + F D +VS S ++ +++N + +T
Sbjct: 246 ENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 1263 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNC 1321
H+ + ++A ++ I SGS + + + + G L ++ H S ++ + N
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS--VAVANG 361
Query: 1322 LTFHPYQVLLAAGSADACVSI 1342
+ P + A GS D I
Sbjct: 362 SSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 43/324 (13%), Positives = 92/324 (28%), Gaps = 43/324 (13%)
Query: 1044 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS---LLLVASCNG 1100
P + N+ ++N ++ + + V + S L CN
Sbjct: 29 PDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV-----VCCVKFSNDGEYLATGCNK 83
Query: 1101 NIRIWKDYDQKDKQKL-----------VTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1149
++++ D +L SS +R V + G A+
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS----VCFSP-DGKFLAT 138
Query: 1150 GEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPD 1209
G ++ + +++V + S +G VR D
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWD 191
Query: 1210 MLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK------DAYLTI 1263
+ + V ++ PG I + S ++ D +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESG 250
Query: 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKI-----GS 1318
H+ S+ ++ R + SGS + +K+++L+ + S +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 1319 VNCLTFHPYQVLLAAGSADACVSI 1342
V + + +GS D V
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 7e-07
Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 1139 WQQQSGYLYASGEVSSIMLWDLEKEQQM-----VNPIPSSSDCSISALTASQVHGGQLAA 1193
Y+ A ++ +WD E + N + S+ ++ ++ G + +
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVS 271
Query: 1194 GFVDGSVRLYDVRTPDMLVCSTRPHTQQVER--------VVGISFQPGLDPAKIVSASQA 1245
G +D SV+L++++ + S P++ E V+ ++ + I+S S+
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKD 329
Query: 1246 GDIQFLDIRNHKDAYLTIDAHRGSLSALAV------HRHAPIIASGSAKQLIKVFSLE 1297
+ F D ++ + HR S+ ++AV + A+GS +++ +
Sbjct: 330 RGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.2 bits (118), Expect = 1e-06
Identities = 27/194 (13%), Positives = 64/194 (32%), Gaps = 18/194 (9%)
Query: 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK--L 1082
+ + T A+ + A + +++W+ E L+ D+ + G
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 1083 CLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV-VDWQQ 1141
+V D ++ S + ++++W + +K T S V+ V Q
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1142 QSGYLYASGEVSSIMLWDLEKEQQM---------VNPIPSSSDCSISALTASQVHGGQLA 1192
Y+ + + ++ WD + + V + ++ S+ A
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP------EYNVFA 372
Query: 1193 AGFVDGSVRLYDVR 1206
G D R++ +
Sbjct: 373 TGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 18/261 (6%)
Query: 1093 LLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV 1152
L N ++ + +++ H V C V + YL A+G
Sbjct: 31 ALKKQTNDYYILY---NPALPREIDVELHKSLDHTSVVCC----VKFSNDGEYL-ATGCN 82
Query: 1153 SSIMLWDLEKEQQ---MVNPIPSSSDCSISALTASQVHGGQLAA------GFVDGSVRLY 1203
+ ++ + + + ++ D ++S + + G +
Sbjct: 83 KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142
Query: 1204 DVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263
+ + Q S K+VS S ++ D+ LT+
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTL 201
Query: 1264 DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLT 1323
G + IA+GS + ++V+ E L SV +
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261
Query: 1324 FHPYQVLLAAGSADACVSIHS 1344
F + +GS D V + +
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWN 282
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 1041 PFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK-------LCLVNELDVSLL 1093
VV+ + +K+WN + + + ++ L + + +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323
Query: 1094 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVV--VDWQQQSGYLYASGE 1151
L S + + W D+K L+ +QGH+ V V +
Sbjct: 324 LSGSKDRGVLFW---DKKSGNPLLM----LQGHRNSVISVAVANGSSLGPEYNVFATGSG 376
Query: 1152 VSSIMLWDLEK 1162
+W +K
Sbjct: 377 DCKARIWKYKK 387
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 5e-11
Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1246
+G D S +L+DVR + H + I F P + + S
Sbjct: 195 DTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDIN---AICFFP--NGNAFATGSDDA 248
Query: 1247 DIQF-LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTI 1304
+ + + + D +++++ + ++ +G V+ ++ G +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 1305 RYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342
H V+CL + +A GS D+ + I
Sbjct: 309 AGHD--------NRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.5 bits (132), Expect = 2e-08
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)
Query: 1132 CSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190
+V+ L+ SG +S LWD+ + S I+A+ +G
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFP-NGNA 240
Query: 1191 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1250
A G D + RL+D+R T H + + +SF +++ +
Sbjct: 241 FATGSDDATCRLFDLRADQE--LMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNV 296
Query: 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295
D A + H +S L V +A+GS +K+++
Sbjct: 297 WDALKADRAG-VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 17/121 (14%)
Query: 1042 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1098
F P ++ ++++ D +HD GI+ + LLL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSK--SGRLLLAGYD 290
Query: 1099 NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1158
+ N +W D + + GH V C + + S + +W
Sbjct: 291 DFNCNVW---DALKADRAGV----LAGHDNRVSC----LGVTDDGMAVATGSWDSFLKIW 339
Query: 1159 D 1159
+
Sbjct: 340 N 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 0.001
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1084
G + +++A ++ +W+ + H D +S L +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH---DNRVSCLGV 320
Query: 1085 VNELDVSLLLVASCNGNIRIW 1105
+ D + S + ++IW
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-10
Identities = 42/323 (13%), Positives = 97/323 (30%), Gaps = 37/323 (11%)
Query: 1036 TALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD--------------------FP 1075
LQ +V+ ++ +K+W+ L + H
Sbjct: 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 79
Query: 1076 DKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNV 1135
++ C +D V + Q +
Sbjct: 80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139
Query: 1136 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1195
V Q + + + +WD E E + ++ Q G + +G
Sbjct: 140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-----QFDGIHVVSGS 194
Query: 1196 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255
+D S+R++DV T + + T G+ + + +VS + ++ DI+
Sbjct: 195 LDTSIRVWDVETGNCI----HTLTGHQSLTSGMELKDNI----LVSGNADSTVKIWDIKT 246
Query: 1256 HKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQ 1314
+ ++ + + + + + S +K++ L+ GE + +
Sbjct: 247 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---SGG 303
Query: 1315 KIGSVNCLTFHPYQVLLAAGSAD 1337
G V + +++ A GS +
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 0.002
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 1025 CWDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCL 1084
C T + T+ ++ I+V+ + + +KIW+ + L + + ++ L
Sbjct: 209 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 1085 VNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144
++ +S +G +++W + + LVT S G V + +
Sbjct: 269 NKNFVIT----SSDDGTVKLWDLKTGEFIRNLVTLESG--GSGGVVWR----IRA-SNTK 317
Query: 1145 YLYASG-----EVSSIMLWDLEKE 1163
+ A G E + +++ D + +
Sbjct: 318 LVCAVGSRNGTEETKLLVLDFDVD 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 30/266 (11%), Positives = 66/266 (24%), Gaps = 43/266 (16%)
Query: 1113 KQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM------ 1166
K + TA ++ + H + V + + + + +WD +
Sbjct: 1 KVFIATA-NAGKAHDADIFS--VSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKS 53
Query: 1167 ----VNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQV 1222
V+ + A+ +A G + Y + D +
Sbjct: 54 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113
Query: 1223 ER------VVGISFQPGLDPAK---IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273
+ + + D +V+ G D ++ + L
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 1274 AVHRHAP----------------IIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQKIG 1317
+P +IA+G +++ L + S +
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMI-NNSN 232
Query: 1318 SVNCLTFHPYQVLLAAGSADACVSIH 1343
S+ + F P LLA
Sbjct: 233 SIRSVKFSPQGSLLAIAHDSNSFGCI 258
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 4e-06
Identities = 47/384 (12%), Positives = 94/384 (24%), Gaps = 33/384 (8%)
Query: 350 WNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDM 409
+ QR D +N++L + S S + + W
Sbjct: 68 DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPE 127
Query: 410 AAEICLSQLPSLVADPNAEYQPSPFFSEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ 469
++ + + + + + + ++ + + + S
Sbjct: 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 187
Query: 470 CHRFRALVLLGRFLDMGPWAVDLALSVGIF-PYVLKLLQTTTPELRQILVFIWTKILALD 528
+ A L L+ D V + Q +R + KI++L
Sbjct: 188 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247
Query: 529 KSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVC 588
+ A I + S E + + D EA
Sbjct: 248 YQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 305
Query: 589 LKHLQGSMPNDAQTE--PLFLQWLCLCLGKLWEDFTEAQTIGRRADAPA----------- 635
+H A P+ Q L +D
Sbjct: 306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH 365
Query: 636 ---IYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 692
+ P R +AV + G +L E + + I + +
Sbjct: 366 VLPFIKEHIKNPDWRYRDAAVMAFGCIL--------------EGPEPSQLKPLVIQAMPT 411
Query: 693 LLTVVSDGSPLVRAEVAVALARFA 716
L+ ++ D S +VR A + R
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC 435
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 40/286 (13%), Positives = 76/286 (26%), Gaps = 46/286 (16%)
Query: 1039 LQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHD------FPDKGISKLCLVNELDVSL 1092
LQ +V+ + IKIW+ H D+ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 1093 LLVASCNGNIRIWKDYDQKDKQKL-----------------VTAFSSIQGHKPGVRCSNV 1135
+ N I + + + + I + V
Sbjct: 81 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140
Query: 1136 VVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF 1195
V Y+ ++ +I +W+ + + + Q + +G
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC-----LQYRDRLVVSGS 195
Query: 1196 VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255
D ++RL+D+ L + D +IVS + G I+ D+
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEE--------LVRCIRFDNKRIVSGAYDGKIKVWDLVA 247
Query: 1256 HKDAYL--------TIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1293
D T+ H G + L I S S I +
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 24/154 (15%)
Query: 1055 IKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114
IK+WN + + + H + L++ S + IR+W
Sbjct: 160 IKVWNTSTCEFVRTLNGHKRG-------IACLQYRDRLVVSGSSDNTIRLWD-------- 204
Query: 1115 KLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSS 1174
+ +V + + + + I +WDL P +
Sbjct: 205 -----IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 1175 DCSI----SALTASQVHGGQLAAGFVDGSVRLYD 1204
++ + Q Q+ + D ++ ++D
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 4e-05
Identities = 28/332 (8%), Positives = 66/332 (19%), Gaps = 49/332 (14%)
Query: 1042 FSP---IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1098
++ + + + + DT+ S D + D V +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNN 59
Query: 1099 NGN-IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157
+ I D D S + +YA+ + +
Sbjct: 60 HYGDIYGI-DLDTCKNTFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLN 114
Query: 1158 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1217
+ + ++ + + D + T
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK 174
Query: 1218 HTQQV---ERVVGISF------------------------QPGLDPAKIVSASQAGDIQF 1250
+T + + D +A
Sbjct: 175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234
Query: 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPS 1310
+D++ K P G +L K + + + H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH-- 292
Query: 1311 FMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342
+ C+ F L G +++
Sbjct: 293 -------TYYCVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 1218 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVH 1276
H+ VE + ++ D +I ++ + +K + + H G ++ +
Sbjct: 3 HSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 1277 RHAPIIASGSAKQLIKVFS 1295
+ I + + V++
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 0.001
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1271 SALAVHRHAPIIASGSAKQLIKVFSLEG---EQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327
S A ++ IA + ++ G Q+ ++ H+ G V + + P
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--------GQVTGVDWAPD 62
Query: 1328 QVLLAAGSADACVSIHS 1344
+ D + +
Sbjct: 63 SNRIVTCGTDRNAYVWT 79
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 10/78 (12%)
Query: 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTF 1324
H + +L S L+ + G + + SV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---------SSVLSCDI 314
Query: 1325 HPYQVLLAAGSADACVSI 1342
+ GS D ++
Sbjct: 315 SVDDKYIVTGSGDKKATV 332
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 0.001
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG 1246
G ++A+ D ++++++V T + + T+ ++ +GI + +VS S G
Sbjct: 249 DGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIW----TKQALVSISANG 303
Query: 1247 DIQFLDI 1253
I F++
Sbjct: 304 FINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.9 bits (91), Expect = 0.002
Identities = 32/306 (10%), Positives = 72/306 (23%), Gaps = 28/306 (9%)
Query: 1042 FSP----IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS 1097
+P I + + T + H
Sbjct: 25 NTPAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTT-----VAKTSPSGYYCASGD 77
Query: 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIML 1157
+GN+RIW ++I V+ + + ++ + + L
Sbjct: 78 VHGNVRIWDTTQTTHIL-----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
Query: 1158 WDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP 1217
+D + + + + V +
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 1218 HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHR 1277
H+ + + G D ++ G + + + G
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL----TWSP 248
Query: 1278 HAPIIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336
IAS SA + IK++++ + TI L + L + SA
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-------EDQQLGIIWTKQALVSISA 301
Query: 1337 DACVSI 1342
+ ++
Sbjct: 302 NGFINF 307
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 9/67 (13%), Positives = 24/67 (35%)
Query: 1139 WQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDG 1198
S G ++I +WD+ + + + G++ + +DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 1199 SVRLYDV 1205
++ Y++
Sbjct: 319 TLNFYEL 325
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.004
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 5/195 (2%)
Query: 500 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRA 559
P ++ L + + + I + D+S + + + GG + L S +
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--PNQNVQQ 62
Query: 560 MAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWE 619
AA L +V + I + L+ + + Q L L L E
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK---QLTGLLWNLSSTDE 119
Query: 620 DFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDD 679
E A + +P S + R+ D
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 680 DEKIRAEISIIRSLL 694
I + + +
Sbjct: 180 MRNYSGLIDSLMAYV 194
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 39/279 (13%), Positives = 90/279 (32%), Gaps = 22/279 (7%)
Query: 1075 PDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSN 1134
P IS + ++ SLLL+ S +G++ ++K Q L+ + +K + C
Sbjct: 10 PKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLC-- 61
Query: 1135 VVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAG 1194
++ + G + ++ ++++ ++ + +L A
Sbjct: 62 --CNFIDNTDLQIYVGT-VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118
Query: 1195 FVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIR 1254
DG + + D R V + + +V F + ++++ +Q+ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178
Query: 1255 NHKDAYLTI---DAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSF 1311
+D TI + + A S + V + + +F
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238
Query: 1312 MAQK--------IGSVNCLTFHPYQVLLAAGSADACVSI 1342
+ VN + F P L +D +S
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1344 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.69 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.67 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.67 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.59 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.55 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.47 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.36 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.3 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.2 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.12 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.11 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.07 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.98 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.93 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.92 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.88 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.86 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.85 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.78 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.77 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.75 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.67 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.61 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.55 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.52 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.37 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.35 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.28 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.21 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.19 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.91 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.91 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.83 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.8 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.78 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.7 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.66 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.62 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.55 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.48 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.36 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.24 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.44 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.34 | |
| d1nw9b_ | 277 | Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | 95.98 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.33 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 94.87 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.98 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.46 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.43 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.07 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 91.15 | |
| g1sc3.1 | 261 | Interleukin-1beta converting enzyme (a cysteine pr | 90.54 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 89.81 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 88.55 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 88.29 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.73 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 85.47 | |
| g1qtn.1 | 242 | Caspase-8 {Human (Homo sapiens) [TaxId: 9606]} | 84.34 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 81.83 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 80.45 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-36 Score=270.40 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=238.7
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEE
Q ss_conf 67899817999947999999997899499998799937-----8884079999998489999860899899999789809
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL-----LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~-----i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~I 1102 (1344)
..|...|++++|+|++++|++|+ ||.|+|||+.++.. .....+|. ..|.+++| ++++++|++++.||.|
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~---~~I~~v~~--s~dg~~l~s~~~dg~i 121 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD---NYIRSCKL--LPDGCTLIVGGEASTL 121 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT---SBEEEEEE--CTTSSEEEEEESSSEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCCC
T ss_conf 79999289999989999999997-998899773677633116876404889---96899998--6799889886123321
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 99835577885059860102357899722350379993599969999889819999877896246653499999826999
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1103 rIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~ 1182 (1344)
++|++..... +.. ..+..|...+.. +.|++++..+++++.++.|++||+.+++ +......+... |+++
T Consensus 122 ~iwd~~~~~~--~~~---~~~~~~~~~v~~----~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~-v~~l- 189 (337)
T d1gxra_ 122 SIWDLAAPTP--RIK---AELTSSAPACYA----LAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG-ASCI- 189 (337)
T ss_dssp EEEECCCC----EEE---EEEECSSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-
T ss_pred CCCCCCCCCC--CCC---CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-
T ss_conf 1111111111--111---111111111111----1111111111111111111111111111-11111111111-1101-
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf 87599989999977990999987899702684257887877859999920899999999978992999977888631599
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1183 ~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~ 1262 (1344)
.+++++..+++|+.||.+++||+++++ .+... .|...|.+++|+|+ +..+++|+.||.+++||++.. .. ..
T Consensus 190 ~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~----~~~~~i~~l~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~-~~ 260 (337)
T d1gxra_ 190 DISNDGTKLWTGGLDNTVRSWDLREGR-QLQQH----DFTSQIFSLGYCPT--GEWLAVGMESSNVEVLHVNKP-DK-YQ 260 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTE-EEEEE----ECSSCEEEEEECTT--SSEEEEEETTSCEEEEETTSS-CE-EE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCC----CCCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCC-CC-CC
T ss_conf 234443211223566553211111100-00024----66661579997153--030000002564211111111-10-00
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 9057998699999079998999967990999967-992689983457864445678738999936997899998898099
Q 000700 1263 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1263 l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
...|...|++++|+|++.+|++++.|+.|++||. +++.+..+. |. +.|.+++|+|++++|++|+.||.|+
T Consensus 261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~-------~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ES-------SSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CS-------SCEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC--CC-------CCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 01245654169998999999999489969999899997999926--99-------9879999927999999990899699
Q ss_pred ECC
Q ss_conf 919
Q 000700 1342 IHS 1344 (1344)
Q Consensus 1342 IWd 1344 (1344)
||+
T Consensus 332 vWd 334 (337)
T d1gxra_ 332 VYE 334 (337)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-35 Score=266.25 Aligned_cols=288 Identities=19% Similarity=0.291 Sum_probs=240.7
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---------------CCCCEEEEEEEEECCCCEE
Q ss_conf 7899817999947999999997899499998799937888407999---------------9998489999860899899
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF---------------PDKGISKLCLVNELDVSLL 1093 (1344)
Q Consensus 1029 ~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~---------------~~~~ItsL~f~ns~d~~~L 1093 (1344)
.|...|++++|+|+|++|++|+ |+.|+||+..+++.+..+..+.. ....|++++| ++++.+|
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~~l 136 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFL 136 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE--CTTSSEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE--CCCCCCC
T ss_conf 9999689999999999999994-994899981364057663166544324432111014677898899998--8999801
Q ss_pred EEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 99978980999835577885059860102357899722350379993599969999889819999877896246653499
Q 000700 1094 LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1173 (1344)
Q Consensus 1094 itgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~ 1173 (1344)
++|+.||.|++|+... ++.. ....+|...+.+ +.|++++..+++++.++.+++||.++.. .......+
T Consensus 137 ~s~~~dg~v~i~~~~~--~~~~-----~~~~~h~~~v~~----~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~ 204 (388)
T d1erja_ 137 ATGAEDRLIRIWDIEN--RKIV-----MILQGHEQDIYS----LDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIE 204 (388)
T ss_dssp EEEETTSCEEEEETTT--TEEE-----EEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECS
T ss_pred EECCCCCCCCCCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCCCCCC
T ss_conf 2134441111211111--1111-----111111111111----0111111111122210156541011111-10000124
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf 9998269998759998999997799099998789970268425----788787785999992089999999997899299
Q 000700 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR----PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249 (1344)
Q Consensus 1174 ~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~----~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~ 1249 (1344)
.. ..++.+++.+++++++|+.||.|++||.+++... ..+. ...+|...|.++.|+|+ +.++++|+.||.|+
T Consensus 205 ~~--~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~d~~i~ 279 (388)
T d1erja_ 205 DG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV-ERLDSENESGTGHKDSVYSVVFTRD--GQSVVSGSLDRSVK 279 (388)
T ss_dssp SC--EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE-EEEC------CCCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred CC--CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC-EEECCCCCCCCCCCCCEEEEEECCC--CCEEEEEECCCCEE
T ss_conf 54--4211236887875899738981999634557300-0102443334577898789999799--99999997899289
Q ss_pred EEECCCCC-----------CCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99778886-----------31599905799869999907999899996799099996-7992689983457864445678
Q 000700 1250 FLDIRNHK-----------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIG 1317 (1344)
Q Consensus 1250 IWDl~~~~-----------~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~ 1317 (1344)
+||++... ........|...|++++|+|++.+|++|+.||.|++|| .+++.+..+.+ |. +
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~-------~ 351 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HR-------N 351 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CS-------S
T ss_pred EEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CC-------C
T ss_conf 875157764321013444200110124553278999889999999996989799999999969999968-89-------9
Q ss_pred CEEEEEE------ECCCCEEEEEECCCEEEECC
Q ss_conf 7389999------36997899998898099919
Q 000700 1318 SVNCLTF------HPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1318 ~V~slaf------spdg~~Lasgs~Dg~I~IWd 1344 (1344)
.|.++++ +|++.+|++|+.||.|+||+
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 789999846742589999999991899799976
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-35 Score=262.69 Aligned_cols=285 Identities=19% Similarity=0.342 Sum_probs=251.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..|...|++++|+|++++|++|+.||.|+|||+++++.+..+.+|. ..|.+++| ++++.++++++.++.+.+|+.
T Consensus 14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT---DSVQDISF--DHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCCCEEET
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--ECCCCCCCCCCCCCCCCCCCC
T ss_conf 5888876899993898999999389929999899997999995788---86777763--011110111111111011100
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57788505986010235789972235037999359996999988981999987789624665349999982699987599
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~d 1187 (1344)
.. .... ..+.+|...+.+ +.|++++..+++++.|+.+++||++++. .+..+..+... +.++ .++++
T Consensus 89 ~~--~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~ 154 (317)
T d1vyhc1 89 QG--FECI-----RTMHGHDHNVSS----VSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREW-VRMV-RPNQD 154 (317)
T ss_dssp TS--SCEE-----ECCCCCSSCEEE----EEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EECTT
T ss_pred CC--CCCC-----CCCCCCCCCCEE----EECCCCCCEEEEECCCCCEEEEECCCCE-EEEEECCCCCC-CEEE-ECCCC
T ss_conf 11--1111-----110000000000----0016998557765267523575114430-34687167776-3000-01667
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC------------------CCCCEEEEEECCCCEE
Q ss_conf 9899999779909999878997026842578878778599999208------------------9999999997899299
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------------------LDPAKIVSASQAGDIQ 1249 (1344)
Q Consensus 1188 g~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~------------------~~g~~Lvsgs~DG~I~ 1249 (1344)
+.++++++.||.|++|+.+... ....+. +|...+.++.++++ ..+..+++|+.||.|+
T Consensus 155 ~~~l~~~~~d~~v~~~~~~~~~-~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 230 (317)
T d1vyhc1 155 GTLIASCSNDQTVRVWVVATKE-CKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230 (317)
T ss_dssp SSEEEEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCEEEEEECCCEEEEEEECCCE-EEEEEE---CCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEE
T ss_conf 9999999279829997512540-347882---477873379986325641110345630343025886147516997899
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99778886315999057998699999079998999967990999967-99268998345786444567873899993699
Q 000700 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQ 1328 (1344)
Q Consensus 1250 IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg 1328 (1344)
+||++++ .++.++.+|...|++++++|++.+|++|+.||.|++||+ +++.+..+.+ |. +.|++++|+|++
T Consensus 231 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~-------~~V~~~~~s~~~ 301 (317)
T d1vyhc1 231 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HE-------HFVTSLDFHKTA 301 (317)
T ss_dssp EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CS-------SCEEEEEECSSS
T ss_pred EEECCCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEECCCC
T ss_conf 9888999-68899968899879999879999999997989499999999919999928-99-------988999994999
Q ss_pred CEEEEEECCCEEEECC
Q ss_conf 7899998898099919
Q 000700 1329 VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1329 ~~Lasgs~Dg~I~IWd 1344 (1344)
.+|++|+.||.|+|||
T Consensus 302 ~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 302 PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCEEEEEC
T ss_conf 9999992899499829
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.9e-34 Score=252.69 Aligned_cols=286 Identities=15% Similarity=0.248 Sum_probs=241.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..|...|++++|+|++++|++|+.||.|+|||..+++.+..+..|. ..|.+++| ++++.++++++.|+.+++|+.
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAY--APSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC---SCEEEEEE--CTTSSEEEEEETTCCEEEEES
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC---CCEEEEEE--ECCCEEEEEECCCCEEECCCC
T ss_conf 8878988899998999999999789955563102102579972465---33775676--012114431013320101332
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57788505986010235789972235037999359996999988981999987789624665349999982699987599
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~d 1187 (1344)
.......... ..+.+|...... .. ...+..+.....+.....++..... .......+... +... ...+.
T Consensus 127 ~~~~~~~~~~---~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~ 195 (340)
T d1tbga_ 127 KTREGNVRVS---RELAGHTGYLSC----CR-FLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGD-VMSL-SLAPD 195 (340)
T ss_dssp SSSCSCCCEE---EEECCCSSCEEE----EE-EEETTEEEEEETTTEEEEEETTTTE-EEEEEECCSSC-EEEE-EECTT
T ss_pred CCCCCCCCCC---EECCCCCCCCCC----CC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEE-EEEE-CCCCC
T ss_conf 2221222111---001354211011----11-1111111111244543200123221-11112331015-7630-01244
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE--C
Q ss_conf 98999997799099998789970268425788787785999992089999999997899299997788863159990--5
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID--A 1265 (1344)
Q Consensus 1188 g~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~--~ 1265 (1344)
+.++++|+.||.|++||+++++ ....+. +|...|++++|+|+ +.++++|+.||.|++||++.. .....+. .
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~-~~~~~~---~h~~~i~~v~~~p~--~~~l~s~s~d~~i~~~~~~~~-~~~~~~~~~~ 268 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGM-CRQTFT---GHESDINAICFFPN--GNAFATGSDDATCRLFDLRAD-QELMTYSHDN 268 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTE-EEEEEC---CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-EEEEEECCTT
T ss_pred CCEEEEEECCCEEEEEECCCCC-EEEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEEEEEECCC-CCCCCCCCCC
T ss_conf 2126876057369999999994-889995---78898589999799--899999969996999752122-1111111224
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 799869999907999899996799099996-7992689983457864445678738999936997899998898099919
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1266 h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
+...+++++|++++.+|++|+.||.|++|| .+++.+..+.+ |. +.|++++|+|++.+|++|+.||.|+|||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~-------~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HD-------NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CS-------SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC-CC-------CCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 457458999989999999997979899999999939899848-99-------9789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-34 Score=256.26 Aligned_cols=281 Identities=15% Similarity=0.153 Sum_probs=234.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98179999479999999978994999987999378884079999998489999860899899999789809998355778
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~ 1111 (1344)
..+..++++|+++.|+.+. ++.|.+|+.++++....+.+|. ..|++++| ++++++|++|+.||.|++|+.....
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~---~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCC---CCEEEEEE--ECCCCEEECCCCCCEEEEEEEECCC
T ss_conf 8759999969989999996-9999999999996617974788---88899999--4899967225567367466310111
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC--CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 8505986010235789972235037999359996999988--98199998778962466534999998269998759998
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE--VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1112 ~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~--Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~ 1189 (1344)
.... ..+.+|...|.+ ++|++++..+++++. ++.+++|+.++++ ....+.+|.+. |+++ .+++++.
T Consensus 92 ~~~~-----~~~~~~~~~v~~----v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~-v~~v-~~~~~~~ 159 (311)
T d1nr0a1 92 HILK-----TTIPVFSGPVKD----ISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARA-MNSV-DFKPSRP 159 (311)
T ss_dssp CCEE-----EEEECSSSCEEE----EEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSC-EEEE-EECSSSS
T ss_pred CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-CCCCCCE
T ss_conf 1000-----013433575433----233311100011112211111111111111-11111111111-1111-1121110
Q ss_pred -EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE----
Q ss_conf -999997799099998789970268425788787785999992089999999997899299997788863159990----
Q 000700 1190 -QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID---- 1264 (1344)
Q Consensus 1190 -~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~---- 1264 (1344)
.+++|+.||.|++||.++.+ ...... +|...|+++.|+|+ ++++++++.||.|++||.+.+ .....+.
T Consensus 160 ~~l~sgs~d~~i~i~d~~~~~-~~~~~~---~~~~~i~~v~~~p~--~~~l~~~~~d~~v~~~d~~~~-~~~~~~~~~~~ 232 (311)
T d1nr0a1 160 FRIISGSDDNTVAIFEGPPFK-FKSTFG---EHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSL 232 (311)
T ss_dssp CEEEEEETTSCEEEEETTTBE-EEEEEC---CCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC-CEEEECBCTTS
T ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCCC---CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 120001122111111111111-111111---11111111234764--221211111111100012446-41122211111
Q ss_pred ---CCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE
Q ss_conf ---5799869999907999899996799099996-799268998345786444567873899993699789999889809
Q 000700 1265 ---AHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACV 1340 (1344)
Q Consensus 1265 ---~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I 1340 (1344)
+|.+.|++++|+|++.+|++|+.|+.|+||| .+++.+.++.. |.. ....+.++.| ++..|++++.||.|
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~----~~~~~~~~~~--~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTR----IEDQQLGIIW--TKQALVSISANGFI 305 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSS----GGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEC-CCC----CCCEEEEEEE--CCCEEEEEECCCEE
T ss_conf 1100246532102478899999993799699999999969999979-998----6332999995--19999999899979
Q ss_pred EECC
Q ss_conf 9919
Q 000700 1341 SIHS 1344 (1344)
Q Consensus 1341 ~IWd 1344 (1344)
++||
T Consensus 306 ~~wd 309 (311)
T d1nr0a1 306 NFVN 309 (311)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.7e-34 Score=252.75 Aligned_cols=291 Identities=14% Similarity=0.168 Sum_probs=228.7
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 981799994799999999789949999879993--788840799999984899998608998999997898099983557
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~--~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~ 1109 (1344)
.+|+|++|+|++.+||+|+.||.|+||+..+++ .+..+++|. +.|++++| ++++++|++++.|+.|++|++..
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~f--sp~~~~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC---CCEEEEEE--CCCCCEEEEEECCCEEEEEEECC
T ss_conf 88389999899999999948898999988899789999955889---98889999--79999999997999399986203
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEE----EEECCCCCCCEEEEEEEC
Q ss_conf 7885059860102357899722350379993599969999889819999877896246----653499999826999875
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMV----NPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1110 ~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v----~~i~~~~~~~Vtsl~~~s 1185 (1344)
+..... ..+.+|...+.+ ++|+|++..+++++.|+.|++|+..... .. .....+. ..|+++ .++
T Consensus 83 --~~~~~~---~~~~~~~~~v~~----i~~~p~~~~l~~~s~d~~i~i~~~~~~~-~~~~~~~~~~~~~-~~v~~v-~~~ 150 (371)
T d1k8kc_ 83 --RTWKPT---LVILRINRAARC----VRWAPNEKKFAVGSGSRVISICYFEQEN-DWWVCKHIKKPIR-STVLSL-DWH 150 (371)
T ss_dssp --TEEEEE---EECCCCSSCEEE----EEECTTSSEEEEEETTSSEEEEEEETTT-TEEEEEEECTTCC-SCEEEE-EEC
T ss_pred --CCCCCC---CCCCCCCCCCCC----CCCCCCCCCCEEECCCCCCEEEEEECCC-CCCCCCCCCCCCC-CCCCCC-CCC
T ss_conf --321100---122322110001----1111112110000025763025442033-4331110010111-222111-111
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEE--------------EEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 999899999779909999878997026--------------842578878778599999208999999999789929999
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLV--------------CSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1186 ~dg~~LvsGs~DGsIrIwDlr~~~~~v--------------~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IW 1251 (1344)
|++.+|++|+.||.|++||........ .......+|...|.+++|+|+ ++.+++++.||.|++|
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~d~~i~iw 228 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN--GSRVAWVSHDSTVCLA 228 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS--SSEEEEEETTTEEEEE
T ss_pred CCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECC--CCCCCCCCCCCCCEEE
T ss_conf 11111000134767999840157643100122111111110112440476674789875123--3210000147860588
Q ss_pred ECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE--CCCCEEEEEECC----------------------
Q ss_conf 77888631599905799869999907999899996799099996--799268998345----------------------
Q 000700 1252 DIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS--LEGEQLGTIRYH---------------------- 1307 (1344)
Q Consensus 1252 Dl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd--~~g~~l~~l~~~---------------------- 1307 (1344)
|+..+ ..+..+..|..+|.+++|++++.++++|+ |+.+.+|. .....+. +...
T Consensus 229 d~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (371)
T d1k8kc_ 229 DADKK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS-FGGRLDVPKQSSQRGLTARERFQNLD 305 (371)
T ss_dssp EGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEE-ECCCCCCC--------CHHHHHHHCC
T ss_pred EEECC-CCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEE-EEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf 64101-21000001466520365469997999981-99267877608986288-72020676542124622001685065
Q ss_pred -----------CCCCCCCCCCCEEEEEEECCC----CEEEEEECCCEEEECC
Q ss_conf -----------786444567873899993699----7899998898099919
Q 000700 1308 -----------HPSFMAQKIGSVNCLTFHPYQ----VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1308 -----------h~~f~~~~~~~V~slafspdg----~~Lasgs~Dg~I~IWd 1344 (1344)
.......|.+.|+++++++.+ ..++|++.||.|++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred CEEEEECCCCCCCEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 2058712455661412555698899999489986567999991899399996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-30 Score=228.73 Aligned_cols=286 Identities=13% Similarity=0.145 Sum_probs=213.3
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE-CCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 126789981799994799999999789949999879993788840-7999999848999986089989999978980999
Q 000700 1026 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFD-NHDFPDKGISKLCLVNELDVSLLLVASCNGNIRI 1104 (1344)
Q Consensus 1026 Wd~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~-~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrI 1104 (1344)
--..|...|++++|+|++++|++|+.||.|++||+++++.+..+. .|. ..|++++| ++++. +++++.|+.+++
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~---~~v~~v~~--~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---TMITGIKT--TSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS---SCEEEEEE--CTTSC-EEEEETTTEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC---CCEEEEEE--ECCCE-EECCCCEEEEEE
T ss_conf 8488887828999979999999990899299999999968899837887---74899884--03311-210231026887
Q ss_pred EECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 83557788505986010235789972235037999359996999988981999987789624665349999982699987
Q 000700 1105 WKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1105 Wdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~ 1184 (1344)
|+.......... .....+...+.+ +.|++++..++ ++.++.+++|+..... . .... ..+.++ .+
T Consensus 81 ~~~~~~~~~~~~----~~~~~~~~~~~~----~~~s~~g~~~~-~~~~~~i~~~~~~~~~---~-~~~~--~~~~~~-~~ 144 (299)
T d1nr0a2 81 VPAGGSGVDSSK----AVANKLSSQPLG----LAVSADGDIAV-AACYKHIAIYSHGKLT---E-VPIS--YNSSCV-AL 144 (299)
T ss_dssp ECSSSSSSCTTS----CCEEECSSCEEE----EEECTTSSCEE-EEESSEEEEEETTEEE---E-EECS--SCEEEE-EE
T ss_pred ECCCCCCCCCCC----CCCCCCCCCCCC----CCCCCCCCCCC-CCCCCCCCCCCCCCCC---C-CCCC--CCCCCC-CC
T ss_conf 316776201110----001111344321----00112211111-2222222111111111---1-0111--123322-11
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC--CEEE
Q ss_conf 59998999997799099998789970268425788787785999992089999999997899299997788863--1599
Q 000700 1185 QVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD--AYLT 1262 (1344)
Q Consensus 1185 s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~--~i~~ 1262 (1344)
+++++++++|+.||.|++||+++........ ..|...|++++|+|+ +.++++++.||.|++||+.++.. ....
T Consensus 145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~ 219 (299)
T d1nr0a2 145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKT---IVHPAEITSVAFSNN--GAFLVATDQSRKVIPYSVANNFELAHTNS 219 (299)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEE---EECSSCEEEEEECTT--SSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111111---111111111111111--11111111111111111111111111111
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 905799869999907999899996799099996799-2689983457864445678738999936997899998898099
Q 000700 1263 IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVS 1341 (1344)
Q Consensus 1263 l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~ 1341 (1344)
+..|...|++++|+|++.++++|+.|+.|++||+.. .....+.. +. .+...+.++.|. ++.+|++++.|+.|+
T Consensus 220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~----~~~~~v~~~~~~-~~~~l~s~s~D~~i~ 293 (299)
T d1nr0a2 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-GA----HAMSSVNSVIWL-NETTIVSAGQDSNIK 293 (299)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-TS----STTSCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEE-CC----CCCCCEEEEEEC-CCCEEEEEECCCEEE
T ss_conf 111111111112466645138882899799998999973148983-48----988968999977-989999992899799
Q ss_pred ECC
Q ss_conf 919
Q 000700 1342 IHS 1344 (1344)
Q Consensus 1342 IWd 1344 (1344)
+||
T Consensus 294 iWd 296 (299)
T d1nr0a2 294 FWN 296 (299)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 994
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-30 Score=226.93 Aligned_cols=294 Identities=13% Similarity=0.119 Sum_probs=223.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCC-EEEEECCCC--CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 98179999479999999978994-999987999--378884079999998489999860899899999789809998355
Q 000700 1032 KGTKTALLQPFSPIVVAADENER-IKIWNYEED--TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~dg~-I~IWd~~tg--~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~ 1108 (1344)
..+++++|+|+++.|++++.+.. |+.|+.... ..+..+.+|. ...|++++|.+..++.+|++|+.||+|+||+..
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCC--CCCEEEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 984799998997999999699879999768888765028990789--998899998117999799999489977985405
Q ss_pred CCCCCEEEEE-EEECCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 7788505986-01023578997223503799935999699998--89819999877896246653499999826999875
Q 000700 1109 DQKDKQKLVT-AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1109 ~~~~~~~lv~-~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag--~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s 1185 (1344)
.......... ....+..|...+.+ ++|++++..+++++ .++.+++|+..+++ ++..+.+|... |+++ .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~----v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~-v~~~-~~~ 168 (325)
T d1pgua1 96 FDKESNSVEVNVKSEFQVLAGPISD----ISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQR-INAC-HLK 168 (325)
T ss_dssp EEGGGTEEEEEEEEEEECCSSCEEE----EEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSC-EEEE-EEC
T ss_pred CCCCEEEEECCCCCCCCCCCCCEEE----EEECCCCCCCCEEECCCCCEEEEEEECCCC-CCEEEEECCCC-CCCC-CCC
T ss_conf 8862156510025411365673779----998999882201001244047888502331-10012001234-3211-112
Q ss_pred CCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 9998-999997799099998789970268425788787785999992089999999997899299997788863159990
Q 000700 1186 VHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1186 ~dg~-~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~ 1264 (1344)
+++. .+++++.||.+++||.+..+ .......+..|...|.+++|+|+ .+.++++++.||.|++||++++ +.+.++.
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~v~~v~~~pd-~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~ 245 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSG-EFLKYIE 245 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTC-CEEEECC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCCCCCCEEEEECCC-CCEECCCCCCCCCEEEEEECCC-CCCCCCC
T ss_conf 3432068886211122111122110-00000001577775277630345-3100001123321013430012-2211111
Q ss_pred CCCCCEEEEEEC---CCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEE--EEEECCCCEEEEEECCC
Q ss_conf 579986999990---79998999967990999967-9926899834578644456787389--99936997899998898
Q 000700 1265 AHRGSLSALAVH---RHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNC--LTFHPYQVLLAAGSADA 1338 (1344)
Q Consensus 1265 ~h~~~ItsLa~s---p~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~s--lafspdg~~Lasgs~Dg 1338 (1344)
+|...+.++.|+ +++.+|++++.|+.|+|||+ +++.+..+.. |. +...+.. +.|.++ .+|++++.||
T Consensus 246 ~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~-~~l~s~s~dg 318 (325)
T d1pgua1 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL-DK-----QQLGNQQVGVVATGN-GRIISLSLDG 318 (325)
T ss_dssp BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC-CT-----TCGGGCEEEEEEEET-TEEEEEETTS
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE-CC-----CCCCCEEEEEEECCC-CEEEEEECCC
T ss_conf 1111111100000036899999995899399999999978899995-48-----740676999998899-9999997999
Q ss_pred EEEECC
Q ss_conf 099919
Q 000700 1339 CVSIHS 1344 (1344)
Q Consensus 1339 ~I~IWd 1344 (1344)
.|++||
T Consensus 319 ~i~vwd 324 (325)
T d1pgua1 319 TLNFYE 324 (325)
T ss_dssp CEEEEE
T ss_pred EEEEEE
T ss_conf 999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-29 Score=219.87 Aligned_cols=240 Identities=17% Similarity=0.283 Sum_probs=206.4
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC--CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 67899817999947999999997899499998799--9378884079999998489999860899899999789809998
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEE--DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~t--g~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIW 1105 (1344)
..|...|.+++|+|++++|++|+.||.|++||+.. .+....+..|. ..+..+.| ++++.++++++.|+.|++|
T Consensus 94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~--~~~~~~l~s~~~d~~i~~~ 168 (337)
T d1gxra_ 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA---PACYALAI--SPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS---SCEEEEEE--CTTSSEEEEEETTSCEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 488996899998679988988612332111111111111111111111---11111111--1111111111111111111
Q ss_pred ECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 35577885059860102357899722350379993599969999889819999877896246653499999826999875
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1106 di~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s 1185 (1344)
+..+ ++.. ....+|...+.+ ++|++++..+++++.|+.+++||+++++ .+..+.. .. .|.++ .++
T Consensus 169 ~~~~--~~~~-----~~~~~~~~~v~~----l~~s~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~-~~-~i~~l-~~~ 233 (337)
T d1gxra_ 169 DLHN--QTLV-----RQFQGHTDGASC----IDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDF-TS-QIFSL-GYC 233 (337)
T ss_dssp ETTT--TEEE-----EEECCCSSCEEE----EEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEEC-SS-CEEEE-EEC
T ss_pred CCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCE-EECCCCC-CC-CEEEE-EEC
T ss_conf 1111--1111-----111111111110----1234443211223566553211111100-0002466-66-15799-971
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99989999977990999987899702684257887877859999920899999999978992999977888631599905
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~ 1265 (1344)
++++.+++|+.||.+++||++..+ .... ..|...|++++|+|+ +++|++|+.||.|++||+..+ +.+..+.
T Consensus 234 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~----~~~~~~i~~v~~s~~--g~~l~s~s~Dg~i~iwd~~~~-~~~~~~~- 304 (337)
T d1gxra_ 234 PTGEWLAVGMESSNVEVLHVNKPD-KYQL----HLHESCVLSLKFAYC--GKWFVSTGKDNLLNAWRTPYG-ASIFQSK- 304 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTSSC-EEEE----CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTC-CEEEEEE-
T ss_pred CCCCCCCEECCCCCCCCCCCCCCC-CCCC----CCCCCCCCEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEECC-
T ss_conf 530300000025642111111111-0000----124565416999899--999999948996999989999-7999926-
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 7998699999079998999967990999967
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1266 h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~ 1296 (1344)
|...|++++|+|++++|++|+.|+.|+|||+
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9998799999279999999908996999977
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-29 Score=223.84 Aligned_cols=247 Identities=14% Similarity=0.199 Sum_probs=203.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC--CCEEE
Q ss_conf 67899817999947999999997899499998799937--888407999999848999986089989999978--98099
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC--NGNIR 1103 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~--i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~--DG~Ir 1103 (1344)
..|...|++++|+|++++|++|+.||.|+||++.+++. ...+..|. ..|.+++| ++++.++++++. +..++
T Consensus 55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~--s~d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKDISW--DSESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS---SCEEEEEE--CTTSCEEEEEECCSSCSEE
T ss_pred CCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 478888899999489996722556736746631011110000134335---75433233--3111000111122111111
Q ss_pred EEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE
Q ss_conf 983557788505986010235789972235037999359996-9999889819999877896246653499999826999
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT 1182 (1344)
Q Consensus 1104 IWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~ 1182 (1344)
+|+... ++.. ..+.+|...|.+ ++|++++.. +++++.|+.|++||.++.+ ....+..|... |+++
T Consensus 130 v~~~~~--~~~~-----~~l~~h~~~v~~----v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~~~~~~~~~~~-i~~v- 195 (311)
T d1nr0a1 130 VFLFDT--GTSN-----GNLTGQARAMNS----VDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKSTFGEHTKF-VHSV- 195 (311)
T ss_dssp EEETTT--CCBC-----BCCCCCSSCEEE----EEECSSSSCEEEEEETTSCEEEEETTTBE-EEEEECCCSSC-EEEE-
T ss_pred CCCCCC--CCCC-----CCCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-CCCC-
T ss_conf 111111--1111-----111111111111----11121110120001122111111111111-11111111111-1112-
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC----CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 87599989999977990999987899702684257----88787785999992089999999997899299997788863
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP----HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1258 (1344)
Q Consensus 1183 ~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~----~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~ 1258 (1344)
.++++++++++|+.||.|++||.+.+. ....++. ..+|...|++++|+|+ +++|++|+.||.|++||++++ +
T Consensus 196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~--~~~l~tgs~Dg~v~iwd~~t~-~ 271 (311)
T d1nr0a1 196 RYNPDGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPD--GTKIASASADKTIKIWNVATL-K 271 (311)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT-E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCEEEEEECCCC-C
T ss_conf 347642212111111111000124464-112221111111002465321024788--999999937996999999999-6
Q ss_pred CEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 1599905799-86999990799989999679909999679
Q 000700 1259 AYLTIDAHRG-SLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1259 ~i~~l~~h~~-~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~ 1297 (1344)
++.++..+.. ....+.+.+++..+++++.||.|++||.+
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 9999979998633299999519999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-29 Score=223.50 Aligned_cols=241 Identities=14% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEE
Q ss_conf 98489999860899899999789809998355778850598601023578997223503799935999699998898199
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIM 1156 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~ 1156 (1344)
.+|++++| ++++.+|++|+.||.|+||+... ++...+ ..+.+|...|.+ ++|+|++.++++++.|+.|+
T Consensus 8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~--~~~~~~---~~l~gH~~~V~~----l~fsp~~~~l~s~s~D~~i~ 76 (371)
T d1k8kc_ 8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSG--NKWVQV---HELKEHNGQVTG----VDWAPDSNRIVTCGTDRNAY 76 (371)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEET--TEEEEE---EEEECCSSCEEE----EEEETTTTEEEEEETTSCEE
T ss_pred CCEEEEEE--CCCCCEEEEEECCCEEEEEECCC--CCEEEE---EEECCCCCCEEE----EEECCCCCEEEEEECCCEEE
T ss_conf 88389999--89999999994889899998889--978999---995588998889----99979999999997999399
Q ss_pred EEECCCCCEEE--EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCC
Q ss_conf 99877896246--6534999998269998759998999997799099998789970268425788787785999992089
Q 000700 1157 LWDLEKEQQMV--NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGL 1234 (1344)
Q Consensus 1157 IWDl~s~~~~v--~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~ 1234 (1344)
+||+.... .. ..+..+.. .|+++ .++++++.+++|+.||.+++|+................|...|.+++|+|+
T Consensus 77 vWd~~~~~-~~~~~~~~~~~~-~v~~i-~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~- 152 (371)
T d1k8kc_ 77 VWTLKGRT-WKPTLVILRINR-AARCV-RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN- 152 (371)
T ss_dssp EEEEETTE-EEEEEECCCCSS-CEEEE-EECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-
T ss_pred EEEECCCC-CCCCCCCCCCCC-CCCCC-CCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 98620332-110012232211-00011-111112110000025763025442033433111001011122211111111-
Q ss_pred CCCEEEEEECCCCEEEEECCCCC-----------------CCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE-C
Q ss_conf 99999999789929999778886-----------------31599905799869999907999899996799099996-7
Q 000700 1235 DPAKIVSASQAGDIQFLDIRNHK-----------------DAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-L 1296 (1344)
Q Consensus 1235 ~g~~Lvsgs~DG~I~IWDl~~~~-----------------~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~ 1296 (1344)
+.+|++|+.||.|++||..... ..+.....|...+.+++|+|++.++++++.|+.|++|| .
T Consensus 153 -~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~ 231 (371)
T d1k8kc_ 153 -SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231 (371)
T ss_dssp -SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred -CCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE
T ss_conf -1110001347679998401576431001221111111101124404766747898751233210000147860588641
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEE
Q ss_conf 9926899834578644456787389999369978999988980999
Q 000700 1297 EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSI 1342 (1344)
Q Consensus 1297 ~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~I 1342 (1344)
.+..+..+.. |. .+|.+++|+|++.+|++| .|+.+++
T Consensus 232 ~~~~~~~~~~-~~-------~~v~s~~fs~d~~~la~g-~d~~~~~ 268 (371)
T d1k8kc_ 232 KKMAVATLAS-ET-------LPLLAVTFITESSLVAAG-HDCFPVL 268 (371)
T ss_dssp GTTEEEEEEC-SS-------CCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred CCCCEEEEEC-CC-------CCCEEEEECCCCCEEEEE-CCCCEEE
T ss_conf 0121000001-46-------652036546999799998-1992678
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-28 Score=213.46 Aligned_cols=290 Identities=16% Similarity=0.269 Sum_probs=214.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..|...|.+ +++++|++|++|+.||.|+|||+.+++.+..+.+|. ..|.++.| ++ ++|++++.|+.+++|+.
T Consensus 13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~--~~--~~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQM--RD--NIIISGSTDRTLKVWNA 84 (342)
T ss_dssp ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---SCEEEEEE--ET--TEEEEEETTSCEEEEET
T ss_pred CCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CC--CCCCCCEECCCCCCCCC
T ss_conf 886875099-999789999999189909999899997999994889---99899994--79--86321000001111111
Q ss_pred CCCCCCEEEE------EEE----------------ECCCCCCCCC-----CCCCEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 5778850598------601----------------0235789972-----235037999359996999988981999987
Q 000700 1108 YDQKDKQKLV------TAF----------------SSIQGHKPGV-----RCSNVVVDWQQQSGYLYASGEVSSIMLWDL 1160 (1344)
Q Consensus 1108 ~~~~~~~~lv------~~~----------------~~l~~h~~~V-----~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl 1160 (1344)
.......... ... .......... ........+......++.++.++.|++||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~ 164 (342)
T d2ovrb2 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164 (342)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred CCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEEC
T ss_conf 10000000123330476520246522123444037874035563001110011110000013330243358986999525
Q ss_pred CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEE
Q ss_conf 78962466534999998269998759998999997799099998789970268425788787785999992089999999
Q 000700 1161 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIV 1240 (1344)
Q Consensus 1161 ~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lv 1240 (1344)
.... .+..+..+... +..+ ..++..+++|+.||.|++||++..+ .+.... +|...+.++.++ +++++
T Consensus 165 ~~~~-~~~~~~~~~~~-~~~~---~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~ 231 (342)
T d2ovrb2 165 ETET-CLHTLQGHTNR-VYSL---QFDGIHVVSGSLDTSIRVWDVETGN-CIHTLT---GHQSLTSGMELK----DNILV 231 (342)
T ss_dssp GGTE-EEEEECCCSSC-EEEE---EECSSEEEEEETTSCEEEEETTTCC-EEEEEC---CCCSCEEEEEEE----TTEEE
T ss_pred CCCE-EEEEECCCCCC-CCCC---CCCCCEEEEEECCCEEEEEECCCCE-EEEEEC---CCCCCEEEEECC----CCEEE
T ss_conf 2343-66787275444-2100---6899999999589939995255653-656741---665320577068----99999
Q ss_pred EEECCCCEEEEECCCCCCCEEEEEC---CCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 9978992999977888631599905---7998699999079998999967990999967-99268998345786444567
Q 000700 1241 SASQAGDIQFLDIRNHKDAYLTIDA---HRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKI 1316 (1344)
Q Consensus 1241 sgs~DG~I~IWDl~~~~~~i~~l~~---h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~ 1316 (1344)
+|+.||.|++||+... +....+.. |...+.++.++ +.++++|+.||.|++||+ +++.+..+.. .. ...|.
T Consensus 232 s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~-~~--~~~~~ 305 (342)
T d2ovrb2 232 SGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT-LE--SGGSG 305 (342)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE-CT--TGGGT
T ss_pred EECCCCEEEEEECCCC-CCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCCEEEEEEC-CC--CCCCC
T ss_conf 9748988999865544-2211122100011010000137--98449990899899999999979899862-34--78988
Q ss_pred CCEEEEEEECCCCEEEEEECCCE----EEECC
Q ss_conf 87389999369978999988980----99919
Q 000700 1317 GSVNCLTFHPYQVLLAAGSADAC----VSIHS 1344 (1344)
Q Consensus 1317 ~~V~slafspdg~~Lasgs~Dg~----I~IWd 1344 (1344)
+.|++++|+|++.+|++|+.||+ |++||
T Consensus 306 ~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp CEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 97899998799989999968999704899993
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-28 Score=216.34 Aligned_cols=278 Identities=16% Similarity=0.231 Sum_probs=183.3
Q ss_pred CCCCC-EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 78998-17999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1029 RFEKG-TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1029 ~~~~~-I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
.|... ++|+.| ++++|++|+.||.|+|||..+++.+.++.+|. +.|++++| ++ +++|++|+.||.|++|+.
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~--s~-~~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD---GGVWALKY--AH-GGILVSGSTDRTVRVWDI 81 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS---SCEEEEEE--ET-TTEEEEEETTCCEEEEET
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEE--CC-CCEEEEEECCCCCCCCCC
T ss_conf 837886999998--89999999189909999899993999997899---98899998--69-999999964524432111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCC-------------------------------------------------------
Q ss_conf 5778850598601023578997223-------------------------------------------------------
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRC------------------------------------------------------- 1132 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s------------------------------------------------------- 1132 (1344)
... ..... .....+......
T Consensus 82 ~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d1nexb2 82 KKG--CCTHV---FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156 (355)
T ss_dssp TTT--EEEEE---ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred CCC--CCCCC---CCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEE
T ss_conf 111--11111---1001111111111111232204554388868999856773001246520001000001123401210
Q ss_pred ----CCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf ----5037999359996999988981999987789624665349999982699987599989999977990999987899
Q 000700 1133 ----SNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTP 1208 (1344)
Q Consensus 1133 ----~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~ 1208 (1344)
...+..+.+++..++.+..|+.|++||..+++ .+.....+... +.++ .+++++..+++++.||.|++||.+++
T Consensus 157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDR-IYST-IYDHERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSC-EEEE-EEETTTTEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC-CEEEEECCCCC-CCCC-CCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf 110022210000256334421144204443013110-00110001233-2111-11121002101245636876301221
Q ss_pred CEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEE-EECCCCCEEEEEEC
Q ss_conf 70268425788787785999992089999999997899299997788863159990579986999-99079998999967
Q 000700 1209 DMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL-AVHRHAPIIASGSA 1287 (1344)
Q Consensus 1209 ~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsL-a~sp~g~~LasgS~ 1287 (1344)
. ....++ +|...|.++.++ ++++++|+.||.|++||+++. .. .+..|...+.++ .+++++.++++|+
T Consensus 234 ~-~~~~~~---~h~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~g~- 301 (355)
T d1nexb2 234 E-LMYTLQ---GHTALVGLLRLS----DKFLVSAAADGSIRGWDANDY-SR--KFSYHHTNLSAITTFYVSDNILVSGS- 301 (355)
T ss_dssp C-EEEEEC---CCSSCCCEEEEC----SSEEEEECTTSEEEEEETTTC-CE--EEEEECTTCCCCCEEEECSSEEEEEE-
T ss_pred C-CCCCCC---CCCCCCCCCCCC----CCEEEEEECCCCCCCCCCCCC-CE--ECCCCCCCCEEEEEECCCCCEEEEEE-
T ss_conf 1-111111---111111111232----100333201111111111111-10--00124688229999849998999980-
Q ss_pred CCEEEEEEC-CCCEEEE-EECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 990999967-9926899-8345786444567873899993699789999889809991
Q 000700 1288 KQLIKVFSL-EGEQLGT-IRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1288 Dg~I~Iwd~-~g~~l~~-l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
|+.|++||+ +++.+.. +.. |.+.|++++|+|+ .++++++.||.+.||
T Consensus 302 d~~i~vwd~~tg~~~~~~~~~--------~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 302 ENQFNIYNLRSGKLVHANILK--------DADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TTEEEEEETTTCCBCCSCTTT--------TCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEECC--------CCCCEEEEEECCC-EEEEEEECCCCEEEE
T ss_conf 997999999999798888458--------9998999998399-199999898909999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.6e-28 Score=213.06 Aligned_cols=247 Identities=19% Similarity=0.300 Sum_probs=201.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..+...|++++|+|++++|++|+.||.|++|+...++.+..+.+|. ..|.++.+ .+++..+++++.++.+++|+.
T Consensus 118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~---~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE---QDIYSLDY--FPSGDKLVSGSGDRTVRIWDL 192 (388)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSEEEEEET
T ss_pred CCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCCCCCCEEEEEEEC
T ss_conf 6778988999988999801213444111121111111111111111---11111011--111111112221015654101
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECCCCCEEEEEEC-------CCCCCCEE
Q ss_conf 577885059860102357899722350379993-5999699998898199998778962466534-------99999826
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQ-QQSGYLYASGEVSSIMLWDLEKEQQMVNPIP-------SSSDCSIS 1179 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws-~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~-------~~~~~~Vt 1179 (1344)
.. ...... ...+.. ... +.+. .++..+++++.||.|++||..++. ....+. +|. ..|+
T Consensus 193 ~~--~~~~~~-----~~~~~~-~~~----~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~-~~v~ 258 (388)
T d1erja_ 193 RT--GQCSLT-----LSIEDG-VTT----VAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHK-DSVY 258 (388)
T ss_dssp TT--TEEEEE-----EECSSC-EEE----EEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCS-SCEE
T ss_pred CC--CCCCCC-----CCCCCC-CCC----CCCCCCCCCEEEEECCCCEEEEEECCCCC-CCEEECCCCCCCCCCC-CCEE
T ss_conf 11--111000-----012454-421----12368878758997389819996345573-0001024433345778-9878
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--------ECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 99987599989999977990999987899702684--------2578878778599999208999999999789929999
Q 000700 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS--------TRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFL 1251 (1344)
Q Consensus 1180 sl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~--------~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IW 1251 (1344)
++ .+++++.++++|+.||.|++||++........ ......|...|.+++|+|+ +.+|++|+.||.|++|
T Consensus 259 ~l-~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~vw 335 (388)
T d1erja_ 259 SV-VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--DEYILSGSKDRGVLFW 335 (388)
T ss_dssp EE-EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG--GCEEEEEETTSEEEEE
T ss_pred EE-EECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC--CCEEEEEECCCEEEEE
T ss_conf 99-99799999999978992898751577643210134442001101245532789998899--9999999698979999
Q ss_pred ECCCCCCCEEEEECCCCCEEEEEE------CCCCCEEEEEECCCEEEEEECC
Q ss_conf 778886315999057998699999------0799989999679909999679
Q 000700 1252 DIRNHKDAYLTIDAHRGSLSALAV------HRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1252 Dl~~~~~~i~~l~~h~~~ItsLa~------sp~g~~LasgS~Dg~I~Iwd~~ 1297 (1344)
|++++ +++.++.+|.+.|+++++ +|++.+|++|+.||.|+||+++
T Consensus 336 d~~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 336 DKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ECCCC-CEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 99999-6999996889978999984674258999999999189979997621
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.6e-27 Score=206.91 Aligned_cols=270 Identities=17% Similarity=0.279 Sum_probs=211.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..+..+|+|+.| ++++|++|+.||.|+|||.++++.+.++.+|. ..|+++.| ++++|++|+.||.|++|+.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~----~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT---GSVLCLQY----DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS---SCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred CCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCC---CCEEEEEC----CCCEEECCCCCCCCCCCCC
T ss_conf 899998899987--69999999289939999999991999992677---87763423----6300210011101100000
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCCCCEEEEEEEC
Q ss_conf 5778850598601023578997223503799935999699998898199998778962--46653499999826999875
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ--MVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~--~v~~i~~~~~~~Vtsl~~~s 1185 (1344)
.. +..... ...... .. ..+......++++..++.+.+||...... ....+..+.. .+..+ .+
T Consensus 83 ~~--~~~~~~-----~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~- 146 (293)
T d1p22a2 83 NT--GEMLNT-----LIHHCE--AV----LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVV-DF- 146 (293)
T ss_dssp SS--CCEEEE-----ECCCCS--CE----EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS-CEEEE-EE-
T ss_pred CC--CCCCCC-----CCCCCC--CC----CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCC-EE-
T ss_conf 24--641001-----111110--00----01111110000013566306861344544421210001135-43110-00-
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99989999977990999987899702684257887877859999920899999999978992999977888631599905
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~ 1265 (1344)
....+++++.||.|++||.++.+ .+..+. ++...+..+.++ +..+++++.||.|++||++.. ..+..+.+
T Consensus 147 -~~~~~~~~s~d~~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 216 (293)
T d1p22a2 147 -DDKYIVSASGDRTIKVWNTSTCE-FVRTLN---GHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG-ACLRVLEG 216 (293)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCC-EEEEEE---CCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred -CCCCCCCCCCCCCEEEECCCCCC-EEEEEC---CCCCCCCCCCCC----CCEEEEECCCCEEEEEECCCC-EEEEEECC
T ss_conf -00220110699860410078883-889971---554453221689----875887658998999866556-14665214
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECC----------CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 79986999990799989999679909999679----------92689983457864445678738999936997899998
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFSLE----------GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1266 h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~----------g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs 1335 (1344)
+...+.. +.+++.++++|+.||.|++||+. ...+..+.+ |. +.|++++|+ +.+|++++
T Consensus 217 ~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-H~-------~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 217 HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HS-------GRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CS-------SCCCCEEEC--SSCEEECC
T ss_pred CCEEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECC-CC-------CCEEEEEEC--CCEEEEEE
T ss_conf 3100000--145410799986799799998888864445677545578458-89-------988999971--99999992
Q ss_pred CCCEEEECC
Q ss_conf 898099919
Q 000700 1336 ADACVSIHS 1344 (1344)
Q Consensus 1336 ~Dg~I~IWd 1344 (1344)
.||.|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred CCCEEEEEC
T ss_conf 299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-25 Score=195.62 Aligned_cols=302 Identities=13% Similarity=0.224 Sum_probs=211.7
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC------EEEEEECCCCCCCCEEEEEEE---E--ECCCCEEEE
Q ss_conf 26789981799994799999999789949999879993------788840799999984899998---6--089989999
Q 000700 1027 DTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDT------LLNSFDNHDFPDKGISKLCLV---N--ELDVSLLLV 1095 (1344)
Q Consensus 1027 d~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~------~i~~l~~h~~~~~~ItsL~f~---n--s~d~~~Lit 1095 (1344)
...|...|.++++++ +++++++.|+.|+||+..+.+ .......|. ..+..+... . ..+..++++
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEE
T ss_pred CCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECC---CCCEEEEEEEEECCCCCCCCEEEE
T ss_conf 876367127999969--999999799969987898788776540467654204---771676667500157998768999
Q ss_pred EECCCEEEEEECCCCCCCEEEEEEE-ECCC--CCCCCCCCCCEEEEEECC-----CCEEEEEECCCEEEEEECCCCCE--
Q ss_conf 9789809998355778850598601-0235--789972235037999359-----99699998898199998778962--
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAF-SSIQ--GHKPGVRCSNVVVDWQQQ-----SGYLYASGEVSSIMLWDLEKEQQ-- 1165 (1344)
Q Consensus 1096 gs~DG~IrIWdi~~~~~~~~lv~~~-~~l~--~h~~~V~s~~~~v~ws~~-----~~~Llaag~Dg~I~IWDl~s~~~-- 1165 (1344)
++.||.|++|+.............. ..+. .+...+. .+.|.++ +..+++++.||.+++||+.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW----ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE----EEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEE----EEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 948991999982289820565124563243115789668----9998447886542179998389819998740477534
Q ss_pred ------------EEEEE--CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCCCCCCEEEE
Q ss_conf ------------46653--4999998269998759998999997799099998789970268425---788787785999
Q 000700 1166 ------------MVNPI--PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR---PHTQQVERVVGI 1228 (1344)
Q Consensus 1166 ------------~v~~i--~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~---~~~~h~~~I~sI 1228 (1344)
..... .......++++ .+++++ ++++|+.||.|++||+++++ ....++ ...+|...|.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg-~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSV-DISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSV 237 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEE-EECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEE
T ss_pred CEEEEEECCCEECCCCEECCCCCCCCEEEE-EECCCC-EEEEEECCCCEEEEEECCCC-CCCCCCCCCCCCCCCCEEEEC
T ss_conf 102331032000145100025789867899-978999-89999389829998602332-110000111112425638770
Q ss_pred EEECCCCCCEEEEEECCCC---EEEEECCCCCCCEEEEE-------------CCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 9920899999999978992---99997788863159990-------------5799869999907999899996799099
Q 000700 1229 SFQPGLDPAKIVSASQAGD---IQFLDIRNHKDAYLTID-------------AHRGSLSALAVHRHAPIIASGSAKQLIK 1292 (1344)
Q Consensus 1229 ~~sp~~~g~~Lvsgs~DG~---I~IWDl~~~~~~i~~l~-------------~h~~~ItsLa~sp~g~~LasgS~Dg~I~ 1292 (1344)
+|+|+ +++|++|+.|+. |++||+..+ ..+..+. +|.+.|++++|+|++++|++|+.|++|+
T Consensus 238 ~~spd--g~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~ 314 (393)
T d1sq9a_ 238 KFSPQ--GSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314 (393)
T ss_dssp EECSS--TTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCCC--CCEEEEECCCCCCCEEEECCCCCC-EEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 04665--320112428988421001035321-344431156666431023202358666001389888069877999899
Q ss_pred EEE-CCCCEEEEEECCCCCCCC--------------CCCCCEEEEEEECCC----------CEEEEEECCCEEEECC
Q ss_conf 996-799268998345786444--------------567873899993699----------7899998898099919
Q 000700 1293 VFS-LEGEQLGTIRYHHPSFMA--------------QKIGSVNCLTFHPYQ----------VLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1293 Iwd-~~g~~l~~l~~~h~~f~~--------------~~~~~V~slafspdg----------~~Lasgs~Dg~I~IWd 1344 (1344)
+|| .+++.+.++++ |..-.. -..+.+.++.|.+.+ ..+++++.|+.|++|.
T Consensus 315 vWd~~~g~~~~~l~g-H~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 315 FWDVKTKERITTLNM-HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEETTTTEEEEEEEC-CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEECC-CCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEE
T ss_conf 999999979999988-6876137734899999999999831246998866766312368899799999199089990
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=6.4e-27 Score=204.13 Aligned_cols=240 Identities=18% Similarity=0.351 Sum_probs=208.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89981799994799999999789949999879993788840799999984899998608998999997898099983557
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~ 1109 (1344)
|...|.++.|++++.+++++..++.+.+|+....+....+..|. ..+.++.| .+++..+++++.|+.+++|++.+
T Consensus 58 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~ 132 (317)
T d1vyhc1 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD---HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQT 132 (317)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS---SCEEEEEE--CSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEC--CCCCCEEEEECCCCCEEEEECCC
T ss_conf 88867777630111101111111110111001111111100000---00000001--69985577652675235751144
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC---
Q ss_conf 78850598601023578997223503799935999699998898199998778962466534999998269998759---
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV--- 1186 (1344)
Q Consensus 1110 ~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~--- 1186 (1344)
+... ..+.+|...+.+ +.|++++..+++++.|+.|++|+..... ....+..+... +.++ .+.+
T Consensus 133 --~~~~-----~~~~~~~~~~~~----~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~-i~~~-~~~~~~~ 198 (317)
T d1vyhc1 133 --GYCV-----KTFTGHREWVRM----VRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHV-VECI-SWAPESS 198 (317)
T ss_dssp --CCEE-----EEEECCSSCEEE----EEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-EEEE-EECCSCG
T ss_pred --CEEE-----EEECCCCCCCEE----EECCCCCCEEEEEECCCEEEEEEECCCE-EEEEEECCCCC-CEEE-EEEECCC
T ss_conf --3034-----687167776300----0016679999999279829997512540-34788247787-3379-9863256
Q ss_pred -----------------CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEE
Q ss_conf -----------------998999997799099998789970268425788787785999992089999999997899299
Q 000700 1187 -----------------HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQ 1249 (1344)
Q Consensus 1187 -----------------dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~ 1249 (1344)
.+..+++|+.||.|++||.++++ .+..+. +|...|.++.++|+ +++|++|+.||.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~---~~~~~v~~~~~~~~--~~~l~s~~~dg~i~ 272 (317)
T d1vyhc1 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLV---GHDNWVRGVLFHSG--GKFILSCADDKTLR 272 (317)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEE---CCSSCEEEEEECSS--SSCEEEEETTTEEE
T ss_pred CCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEE---CCCCCEEEEEECCC--CCEEEEEECCCEEE
T ss_conf 4111034563034302588614751699789998889996-889996---88998799998799--99999997989499
Q ss_pred EEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9977888631599905799869999907999899996799099996
Q 000700 1250 FLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1250 IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd 1295 (1344)
+||++++ +++.++.+|.+.|++++|+|++++|++|+.||.|+|||
T Consensus 273 iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 273 VWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999999-19999928999889999949999999992899499829
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.3e-27 Score=205.38 Aligned_cols=293 Identities=7% Similarity=0.073 Sum_probs=206.7
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEE
Q ss_conf 12678998179999479999999978994999987999378---884079999998489999860899899999789809
Q 000700 1026 WDTRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLL---NSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNI 1102 (1344)
Q Consensus 1026 Wd~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i---~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~I 1102 (1344)
....|...|++++|+|++++|++|+.||+|+|||++++... .....|. ..|.+++|.+ .++.++++|+.||.|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~---~~V~~v~f~~-~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK---HPLLCCNFID-NTDLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS---SCEEEEEEEE-SSSEEEEEEETTSCE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCC---CCEEEEEEEC-CCCCEEEECCCCCCE
T ss_conf 688998978889995899999999799929999756998636898855899---9889999958-999789981265311
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE---EEEEECCCCC-CCE
Q ss_conf 998355778850598601023578997223503799935999699998898199998778962---4665349999-982
Q 000700 1103 RIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQ---MVNPIPSSSD-CSI 1178 (1344)
Q Consensus 1103 rIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~---~v~~i~~~~~-~~V 1178 (1344)
++|+.... ..... ...+...... ...+.++...+++++.++.+++||++.... .......+.. ...
T Consensus 82 ~~w~~~~~--~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d1yfqa_ 82 LKVDLIGS--PSFQA-----LTNNEANLGI---CRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp EEECSSSS--SSEEE-----CBSCCCCSCE---EEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred EEEECCCC--CCCCC-----CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEE
T ss_conf 45420443--20000-----0111111111---11111111111110122211102023444330230002430012000
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf 69998759998999997799099998789970268425788787785999992089999999997899299997788863
Q 000700 1179 SALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKD 1258 (1344)
Q Consensus 1179 tsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~ 1258 (1344)
..+ .....+..+++++.||.|++||++......... ....+...+.+..+.+. ++..+++++.||.+.+|+......
T Consensus 152 ~~~-~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~v~~~~~~~~ 228 (342)
T d1yfqa_ 152 KIF-TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPK-EQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CEE-EEEECSSEEEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSG-GGCEEEEEETTSEEEEEECCTTCC
T ss_pred EEE-EEECCCCCEEEECCCCCEEEEECCCCCCCCEEE-EECCCCCCEEEEEEECC-CCCEEEEECCCCEEEEEEECCCCC
T ss_conf 001-000168702465179847887605676341112-10254221014676369-998788654899599998059864
Q ss_pred -----CEEE---------EECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf -----1599---------9057998699999079998999967990999967-992689983457864445678738999
Q 000700 1259 -----AYLT---------IDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLT 1323 (1344)
Q Consensus 1259 -----~i~~---------l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~sla 1323 (1344)
.... ...|...+++++|+|++.+|++|+.||.|++||. +++.+..+.. + ..+..++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~-~--------~~~~~~~ 299 (342)
T d1yfqa_ 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-F--------NEDSVVK 299 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-C--------SSSEEEE
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECC-C--------CCCEEEE
T ss_conf 011123512565553147776235431599669844799987999899999998949887058-9--------9987999
Q ss_pred EECCCCEEEEEECCCEEEECC
Q ss_conf 936997899998898099919
Q 000700 1324 FHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1324 fspdg~~Lasgs~Dg~I~IWd 1344 (1344)
|++++.+|++++.|+.+++|.
T Consensus 300 ~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 300 IACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EEECSSEEEEEEECTHHHHCS
T ss_pred EEECCCEEEEEECCCCEEEEE
T ss_conf 994799999999199278830
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.4e-25 Score=194.47 Aligned_cols=241 Identities=17% Similarity=0.261 Sum_probs=193.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC----CEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 8998179999479999999978994999987999----378884079999998489999860899899999789809998
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEED----TLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIW 1105 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg----~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIW 1105 (1344)
|...|.+++|+|++.++++|+.|+.+.+|+.... .....+.+|. ........ .....+.....++....+
T Consensus 96 ~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~ 169 (340)
T d1tbga_ 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT---GYLSCCRF---LDDNQIVTSSGDTTCALW 169 (340)
T ss_dssp SCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS---SCEEEEEE---EETTEEEEEETTTEEEEE
T ss_pred CCCCEEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCC---CCCCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf 653377567601211443101332010133222212221110013542---11011111---111111111244543200
Q ss_pred ECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 35577885059860102357899722350379993599969999889819999877896246653499999826999875
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1106 di~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s 1185 (1344)
.... ..... ....+...+.. ..+.+....+++++.|+.|++||++++. ++..+..|... |+++ .++
T Consensus 170 ~~~~--~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~-i~~v-~~~ 235 (340)
T d1tbga_ 170 DIET--GQQTT-----TFTGHTGDVMS----LSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESD-INAI-CFF 235 (340)
T ss_dssp ETTT--TEEEE-----EEECCSSCEEE----EEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSC-EEEE-EEC
T ss_pred CCCC--CCCCC-----CCCCCCEEEEE----ECCCCCCCEEEEEECCCEEEEEECCCCC-EEEEEECCCCC-EEEE-EEC
T ss_conf 1232--21111-----12331015763----0012442126876057369999999994-88999578898-5899-997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 99989999977990999987899702684257887877859999920899999999978992999977888631599905
Q 000700 1186 VHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1186 ~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~ 1265 (1344)
++++++++|+.||.|++||++... ....+ ....+...+.++.|+++ +.++++|+.||.|++||+.++ +.+.++.+
T Consensus 236 p~~~~l~s~s~d~~i~~~~~~~~~-~~~~~-~~~~~~~~i~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~ 310 (340)
T d1tbga_ 236 PNGNAFATGSDDATCRLFDLRADQ-ELMTY-SHDNIICGITSVSFSKS--GRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTE-EEEEE-CCTTCCSCEEEEEECSS--SCEEEEEETTSCEEEEETTTC-CEEEEECC
T ss_pred CCCCEEEEEECCCEEEEEEECCCC-CCCCC-CCCCCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCCC-CEEEEECC
T ss_conf 998999999699969997521221-11111-12244574589999899--999999979798999999999-39899848
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 799869999907999899996799099996
Q 000700 1266 HRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1266 h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd 1295 (1344)
|.+.|++++|+|++.+|++|+.||.|+|||
T Consensus 311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 999789999908999999990699799859
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-26 Score=201.83 Aligned_cols=263 Identities=15% Similarity=0.247 Sum_probs=202.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 67899817999947999999997899499998799937888407999999848999986089989999978980999835
Q 000700 1028 TRFEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKD 1107 (1344)
Q Consensus 1028 ~~~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi 1107 (1344)
..|..+|++++|+| |++|+.||.|++||..++ ...|. ..|.++.+ . ++..+++++.|+++++|+.
T Consensus 10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~---~~V~~~~~--~-~~~~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHS---NLIVSLDN--S-KAQEYSSISWDDTLKVNGI 74 (287)
T ss_dssp CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCC---SCEEEEEC--C-STTCCEEEETTTEEEETTE
T ss_pred CCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCC---CCEEEEEE--C-CCCEEEEEEECCCCCCCCC
T ss_conf 88798649999895----789848991999989998-----88877---87899996--5-9972898861012221111
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 57788505986010235789972235037999359996999988981999987789624665349999982699987599
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~d 1187 (1344)
.... + ...+.. +.+.+ ++.+++.+.++.+.+|+..++. .+..+..+. .+.++ .++
T Consensus 75 ~~~~-----------~---~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~---~~~ 129 (287)
T d1pgua2 75 TKHE-----------F---GSQPKV----ASANN-DGFTAVLTNDDDLLILQSFTGD-IIKSVRLNS--PGSAV---SLS 129 (287)
T ss_dssp EEEE-----------C---SSCEEE----EEECS-SSEEEEEETTSEEEEEETTTCC-EEEEEECSS--CEEEE---EEC
T ss_pred CCCC-----------C---CCCEEE----EEECC-CCCEEEEEECCCCEEEECCCEE-EEEECCCCC--EEEEE---ECC
T ss_conf 1111-----------1---221014----66416-7856999603321000011003-543101222--03565---214
Q ss_pred CCEEEEEECCC-EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECC
Q ss_conf 98999997799-09999878997026842578878778599999208999999999789929999778886315999057
Q 000700 1188 GGQLAAGFVDG-SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1188 g~~LvsGs~DG-sIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h 1266 (1344)
+..+++++.|+ .+++|++........ ....|...+++++|+|+ +.+|++|+.||.|++||+..+......+..|
T Consensus 130 ~~~~~v~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h 204 (287)
T d1pgua2 130 QNYVAVGLEEGNTIQVFKLSDLEVSFD---LKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDLQSREVKTSRWAFR 204 (287)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEE---CSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEE---EEECCCCCEEEEEECCC--CCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 751110002210002100012210001---21024785369995167--6521101111110000002332110001111
Q ss_pred CCCEEEEEECCC----------CCEEEEEECCCEEEEEECC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 998699999079----------9989999679909999679--9268998345786444567873899993699789999
Q 000700 1267 RGSLSALAVHRH----------APIIASGSAKQLIKVFSLE--GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAG 1334 (1344)
Q Consensus 1267 ~~~ItsLa~sp~----------g~~LasgS~Dg~I~Iwd~~--g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasg 1334 (1344)
...|++++|+|. +.++++|+.|+.|++|++. ++.+..+.+ |. +.|++++|++++ .|+++
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~-h~-------~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-HK-------DGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-ST-------TCEEEEEEEETT-EEEEE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC-CC-------CCEEEEEECCCC-EEEEE
T ss_conf 1111000001365410012678870276649995999888999758999278-78-------985899998999-89999
Q ss_pred ECCCEEEECC
Q ss_conf 8898099919
Q 000700 1335 SADACVSIHS 1344 (1344)
Q Consensus 1335 s~Dg~I~IWd 1344 (1344)
+.|+.|++|+
T Consensus 276 g~D~~v~iW~ 285 (287)
T d1pgua2 276 GADACIKRWN 285 (287)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCEEEEEE
T ss_conf 7999299999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2.6e-25 Score=192.67 Aligned_cols=247 Identities=13% Similarity=0.156 Sum_probs=136.7
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 93788840799999984899998608998999997898099983557788505986010235789972235037999359
Q 000700 1063 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1142 (1344)
Q Consensus 1063 g~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~ 1142 (1344)
|+..+.+.+|. +.|++++| ++++.+|++|+.||.|++||+.+ ++.... ...+|...|.+ +.|+++
T Consensus 2 g~~~~~~~GH~---~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~--~~~~~~----~~~~h~~~v~~----v~~~~~ 66 (299)
T d1nr0a2 2 GSIDQVRYGHN---KAITALSS--SADGKTLFSADAEGHINSWDIST--GISNRV----FPDVHATMITG----IKTTSK 66 (299)
T ss_dssp TEEEEEECCCS---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT--CCEEEC----SSCSCSSCEEE----EEECTT
T ss_pred CCCCEECCCCC---CCCEEEEE--CCCCCEEEEECCCCEEEEEECCC--CCEEEE----ECCCCCCCEEE----EEEECC
T ss_conf 86136848888---78289999--79999999990899299999999--968899----83788774899----884033
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 9969999889819999877896246---6534999998269998759998999997799099998789970268425788
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMV---NPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT 1219 (1344)
Q Consensus 1143 ~~~Llaag~Dg~I~IWDl~s~~~~v---~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~ 1219 (1344)
+ .+++++.|+.+++|+..... .. .....+ ...+.++ .+++++..+++++ ++.+++|+.... .... .
T Consensus 67 g-~~~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~s~~g~~~~~~~-~~~i~~~~~~~~---~~~~--~- 135 (299)
T d1nr0a2 67 G-DLFTVSWDDHLKVVPAGGSG-VDSSKAVANKL-SSQPLGL-AVSADGDIAVAAC-YKHIAIYSHGKL---TEVP--I- 135 (299)
T ss_dssp S-CEEEEETTTEEEEECSSSSS-SCTTSCCEEEC-SSCEEEE-EECTTSSCEEEEE-SSEEEEEETTEE---EEEE--C-
T ss_pred C-EEECCCCEEEEEEECCCCCC-CCCCCCCCCCC-CCCCCCC-CCCCCCCCCCCCC-CCCCCCCCCCCC---CCCC--C-
T ss_conf 1-12102310268873167762-01110001111-3443210-0112211111222-222211111111---1101--1-
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C
Q ss_conf 787785999992089999999997899299997788863159990579986999990799989999679909999679-9
Q 000700 1220 QQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-G 1298 (1344)
Q Consensus 1220 ~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~-g 1298 (1344)
...+.+++++|+ +.++++|+.||.|++||+++..........|...|++++|+|++.++++++.|+.|++|+.. +
T Consensus 136 --~~~~~~~~~s~~--~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~ 211 (299)
T d1nr0a2 136 --SYNSSCVALSND--KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 211 (299)
T ss_dssp --SSCEEEEEECTT--SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred --CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --112332211111--1111111111111111111111111111111111111111111111111111111111111111
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 2689983457864445678738999936997899998898099919
Q 000700 1299 EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1299 ~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..+..... ...|...|++++|+|++.+|++|+.||.|++|+
T Consensus 212 ~~~~~~~~-----~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 212 FELAHTNS-----WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp TEESCCCC-----CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE
T ss_conf 11111111-----111111111112466645138882899799998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-24 Score=187.56 Aligned_cols=241 Identities=13% Similarity=0.144 Sum_probs=182.2
Q ss_pred CCCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCE--------EEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-
Q ss_conf 899817999947--999999997899499998799937--------888407999999848999986089989999978-
Q 000700 1030 FEKGTKTALLQP--FSPIVVAADENERIKIWNYEEDTL--------LNSFDNHDFPDKGISKLCLVNELDVSLLLVASC- 1098 (1344)
Q Consensus 1030 ~~~~I~si~fsp--dg~~Latgs~dg~I~IWd~~tg~~--------i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~- 1098 (1344)
+...|++++|+| ++.+|++|+.||+|+||++..++. ...+..|. +.|.+++| ++++.++++++.
T Consensus 62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~--s~~~~~l~~~~~~ 136 (325)
T d1pgua1 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA---GPISDISW--DFEGRRLCVVGEG 136 (325)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCS---SCEEEEEE--CTTSSEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC---CCEEEEEE--CCCCCCCCEEECC
T ss_conf 999889999811799979999948997798540588621565100254113656---73779998--9998822010012
Q ss_pred -CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCEEEEEECCCCCEEEEEECCC--C
Q ss_conf -98099983557788505986010235789972235037999359996-9999889819999877896246653499--9
Q 000700 1099 -NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGY-LYASGEVSSIMLWDLEKEQQMVNPIPSS--S 1174 (1344)
Q Consensus 1099 -DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~-Llaag~Dg~I~IWDl~s~~~~v~~i~~~--~ 1174 (1344)
++.+++|+..+ ++.. ..+.+|...+.+ ++|++++.. +++++.|+.+++||....+ ....+..+ +
T Consensus 137 ~~~~~~~~~~~~--~~~~-----~~~~~h~~~v~~----~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~ 204 (325)
T d1pgua1 137 RDNFGVFISWDS--GNSL-----GEVSGHSQRINA----CHLKQSRPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQ 204 (325)
T ss_dssp SSCSEEEEETTT--CCEE-----EECCSCSSCEEE----EEECSSSSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCT
T ss_pred CCCEEEEEEECC--CCCC-----EEEEECCCCCCC----CCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCEECCCCCCC
T ss_conf 440478885023--3110-----012001234321----11123432068886211122111122110-00000001577
Q ss_pred CCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE---CCCCCCEEEEEECCCCEEE
Q ss_conf 998269998759-998999997799099998789970268425788787785999992---0899999999978992999
Q 000700 1175 DCSISALTASQV-HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ---PGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1175 ~~~Vtsl~~~s~-dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~s---p~~~g~~Lvsgs~DG~I~I 1250 (1344)
...|+++ .++| .+.++++++.||.|++||.++++ .+..++. |...+.++.|+ ++ +.+|++++.|+.|++
T Consensus 205 ~~~v~~v-~~~pd~~~~l~s~~~d~~i~iwd~~~~~-~~~~l~~---~~~~v~~~~~s~~~~d--g~~l~s~s~D~~i~i 277 (325)
T d1pgua1 205 GSFVRDV-EFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIED---DQEPVQGGIFALSWLD--SQKFATVGADATIRV 277 (325)
T ss_dssp TCCEEEE-EECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCB---TTBCCCSCEEEEEESS--SSEEEEEETTSEEEE
T ss_pred CCCCEEE-EECCCCCEECCCCCCCCCEEEEEECCCC-CCCCCCC---CCCCCCCCEEEEECCC--CCEEEEEECCCEEEE
T ss_conf 7752776-3034531000011233210134300122-2111111---1111111000000368--999999958993999
Q ss_pred EECCCCCCCEEEEECCCCC--EE--EEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 9778886315999057998--69--9999079998999967990999967
Q 000700 1251 LDIRNHKDAYLTIDAHRGS--LS--ALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1251 WDl~~~~~~i~~l~~h~~~--It--sLa~sp~g~~LasgS~Dg~I~Iwd~ 1296 (1344)
||++++ +++..+..|... .. ++.+.++ .++++++.||.|++||+
T Consensus 278 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 278 WDVTTS-KCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EETTTT-EEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EECCCC-CEEEEEEECCCCCCCEEEEEEECCC-CEEEEEECCCEEEEEEC
T ss_conf 999999-7889999548740676999998899-99999979999999979
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.9e-23 Score=178.08 Aligned_cols=242 Identities=14% Similarity=0.256 Sum_probs=144.2
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89981799994799999999789949999879993788840799999984899998608998999997898099983557
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~ 1109 (1344)
|...|++++|+++ .+|++|+.|+.|++|+....+......... ...........+++..+++++.|+.|++|++..
T Consensus 52 H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~ 127 (355)
T d1nexb2 52 HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127 (355)
T ss_dssp CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCS---SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEECCCCCEEEEECCC
T ss_conf 9998899998699-999999645244321111111111110011---111111111112322045543888689998567
Q ss_pred CCCCE----------------------------------------EEEE----------------EEECCCCCCCCCCCC
Q ss_conf 78850----------------------------------------5986----------------010235789972235
Q 000700 1110 QKDKQ----------------------------------------KLVT----------------AFSSIQGHKPGVRCS 1133 (1344)
Q Consensus 1110 ~~~~~----------------------------------------~lv~----------------~~~~l~~h~~~V~s~ 1133 (1344)
..... .+.. ......++...+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~- 206 (355)
T d1nexb2 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS- 206 (355)
T ss_dssp -----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-
T ss_pred CCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCC-
T ss_conf 7300124652000100000112340121011002221000025633442114420444301311000110001233211-
Q ss_pred CEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 03799935999699998898199998778962466534999998269998759998999997799099998789970268
Q 000700 1134 NVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVC 1213 (1344)
Q Consensus 1134 ~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~ 1213 (1344)
+.|++.+..+++++.|+.|++||.+++. .+..+.+|... |+++ .+ +++++++|+.||.|++||+++......
T Consensus 207 ---~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~-v~~~-~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 278 (355)
T d1nexb2 207 ---TIYDHERKRCISASMDTTIRIWDLENGE-LMYTLQGHTAL-VGLL-RL--SDKFLVSAAADGSIRGWDANDYSRKFS 278 (355)
T ss_dssp ---EEEETTTTEEEEEETTSCEEEEETTTCC-EEEEECCCSSC-CCEE-EE--CSSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---CCCCCCCEEEECCCCCCEEEEEECCCCC-CCCCCCCCCCC-CCCC-CC--CCCEEEEEECCCCCCCCCCCCCCEECC
T ss_conf ---1111210021012456368763012211-11111111111-1111-23--210033320111111111111110001
Q ss_pred EECCCCCCCCCEEEEE-EECCCCCCEEEEEECCCCEEEEECCCCCCCEE-EEECCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 4257887877859999-92089999999997899299997788863159-990579986999990799989999679909
Q 000700 1214 STRPHTQQVERVVGIS-FQPGLDPAKIVSASQAGDIQFLDIRNHKDAYL-TIDAHRGSLSALAVHRHAPIIASGSAKQLI 1291 (1344)
Q Consensus 1214 ~~~~~~~h~~~I~sI~-~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~-~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I 1291 (1344)
.|...+.++. ++++ +.++++| .||.|++||++++ +.+. .+.+|.+.|++++|+++ .++++++.||.+
T Consensus 279 ------~~~~~~~~~~~~~~~--~~~l~~g-~d~~i~vwd~~tg-~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~ 347 (355)
T d1nexb2 279 ------YHHTNLSAITTFYVS--DNILVSG-SENQFNIYNLRSG-KLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347 (355)
T ss_dssp ------EECTTCCCCCEEEEC--SSEEEEE-ETTEEEEEETTTC-CBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred ------CCCCCCEEEEEECCC--CCEEEEE-ECCEEEEEECCCC-CEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCE
T ss_conf ------246882299998499--9899998-0997999999999-7988884589998999998399-199999898909
Q ss_pred EEEE
Q ss_conf 9996
Q 000700 1292 KVFS 1295 (1344)
Q Consensus 1292 ~Iwd 1295 (1344)
+||.
T Consensus 348 ~l~~ 351 (355)
T d1nexb2 348 FLEI 351 (355)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.3e-23 Score=180.53 Aligned_cols=126 Identities=18% Similarity=0.306 Sum_probs=53.9
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC------CCCCCCEEEEEEECCCCCEEEEEECCC---EEEEEECCC
Q ss_conf 99935999699998898199998778962466534------999998269998759998999997799---099998789
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIP------SSSDCSISALTASQVHGGQLAAGFVDG---SVRLYDVRT 1207 (1344)
Q Consensus 1137 v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~------~~~~~~Vtsl~~~s~dg~~LvsGs~DG---sIrIwDlr~ 1207 (1344)
++|+++ +.+++++.||.|++||+.+++ ++..+. +|.. +|+++ .++|++++|++|+.|+ .|++||+.+
T Consensus 190 v~~s~d-g~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~~-~V~~l-~~spdg~~l~sgs~D~t~~~i~lwd~~~ 265 (393)
T d1sq9a_ 190 VDISER-GLIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSN-SIRSV-KFSPQGSLLAIAHDSNSFGCITLYETEF 265 (393)
T ss_dssp EEECTT-SEEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCC-CEEEE-EECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred EEECCC-CEEEEEECCCCEEEEEECCCC-CCCCCCCCCCCCCCCC-EEEEC-CCCCCCCEEEEECCCCCCCEEEECCCCC
T ss_conf 997899-989999389829998602332-1100001111124256-38770-0466532011242898842100103532
Q ss_pred CCEEEEEEC----------CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCE
Q ss_conf 970268425----------788787785999992089999999997899299997788863159990579986
Q 000700 1208 PDMLVCSTR----------PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSL 1270 (1344)
Q Consensus 1208 ~~~~v~~~~----------~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~I 1270 (1344)
+. ....+. ...+|...|++++|+|+ +++|++|+.|+.|++||++++ +++.++.+|...|
T Consensus 266 g~-~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd--~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v 334 (393)
T d1sq9a_ 266 GE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS--GETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDI 334 (393)
T ss_dssp CC-EEEEECBC--------CCBSBSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGC
T ss_pred CE-EEEEECCCCCCCCCEEEEECCCCCEEEECCCCC--CCEEEEECCCCEEEEEECCCC-CEEEEECCCCCCC
T ss_conf 13-444311566664310232023586660013898--880698779998999999999-7999998868761
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=9.8e-24 Score=181.42 Aligned_cols=269 Identities=11% Similarity=0.102 Sum_probs=196.8
Q ss_pred EEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC--EEEEEECCCCC
Q ss_conf 7999947-99999999789949999879993788840799999984899998608998999997898--09998355778
Q 000700 1035 KTALLQP-FSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG--NIRIWKDYDQK 1111 (1344)
Q Consensus 1035 ~si~fsp-dg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG--~IrIWdi~~~~ 1111 (1344)
..-.|+| ||+++|+++ +|.|++|+.+++..+. + .|. ..|.+++| ++|++.|++++.+. .|++|+..+
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~---~~v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~-- 75 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEP---LRIRYVRR--GGDTKVAFIHGTREGDFLGIYDYRT-- 75 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCC---SCEEEEEE--CSSSEEEEEEEETTEEEEEEEETTT--
T ss_pred HCCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE-C-CCC---CCEEEEEE--CCCCCEEEEEECCCCCEEEEEECCC--
T ss_conf 00514688999999998-9969999899994899-1-699---98888999--8999999999928998999998999--
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Q ss_conf 85059860102357899722350379993599969999889819999877896246653499999826999875999899
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQL 1191 (1344)
Q Consensus 1112 ~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~L 1191 (1344)
+... .+..|...+.+ ++|++++.++++++.++.+++|+..++. ....+..+... +.++ .++++++++
T Consensus 76 ~~~~------~~~~~~~~v~~----~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~spdg~~l 142 (360)
T d1k32a3 76 GKAE------KFEENLGNVFA----MGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAM-ITDF-TISDNSRFI 142 (360)
T ss_dssp CCEE------ECCCCCCSEEE----EEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSC-CCCE-EECTTSCEE
T ss_pred CCEE------EEECCCCEEEE----EEECCCCCCCCEECCCCCCCCCCCCCCC-EEEEEECCCCC-CCCH-HHCCCEEEE
T ss_conf 9488------75089712774----1211454321000111110000012221-00000013552-0230-121322566
Q ss_pred EEEE----------CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC----
Q ss_conf 9997----------79909999878997026842578878778599999208999999999789929999778886----
Q 000700 1192 AAGF----------VDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK---- 1257 (1344)
Q Consensus 1192 vsGs----------~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~---- 1257 (1344)
+.+. .++.+++||...++ ..... .+...+..+.|+|+ ++.|++++.++.+.+||.....
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~----~~~~~~~~~~~spd--g~~l~~~s~~~~~~~~d~~~~~~~~~ 215 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT----TENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFSFE 215 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS----CSSSBEEEEEECTT--SCEEEEEESCCCCCEECSSSSCEECC
T ss_pred EEECCCCCCCEEECCCCCEEEECCCCCC-EEEEC----CCCCCCCCCCCCCC--CCEEEEEECCCCEECCCCCCCCEEEC
T ss_conf 5212331211000256542663045571-35303----54322110012577--99999995998557533354402320
Q ss_pred --CCEEEEECC------------------------------------CCCEEEEEECCCCC-------------EEEEEE
Q ss_conf --315999057------------------------------------99869999907999-------------899996
Q 000700 1258 --DAYLTIDAH------------------------------------RGSLSALAVHRHAP-------------IIASGS 1286 (1344)
Q Consensus 1258 --~~i~~l~~h------------------------------------~~~ItsLa~sp~g~-------------~LasgS 1286 (1344)
.....+..+ .+....+..++++. ++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (360)
T d1k32a3 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295 (360)
T ss_dssp SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC
T ss_pred CCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 36411798524696012068777671553113652665400101247675267541389856999973599706999648
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 7990999967992689983457864445678738999936997899998898099919
Q 000700 1287 AKQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1287 ~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.++.+++||.....+..+. +.|.+++|+|||++|++++.||.|++|+
T Consensus 296 ~~~~i~~~d~~~~~~~~~~-----------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d 342 (360)
T d1k32a3 296 EKGVLLKYDVKTRKVTEVK-----------NNLTDLRLSADRKTVMVRKDDGKIYTFP 342 (360)
T ss_dssp CCEEEEEEETTTCCEEEEE-----------EEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCEEEEEECCCCEEEEEC-----------CCCCEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 9987999979997498864-----------8868799999898999997899499999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4.9e-23 Score=176.46 Aligned_cols=262 Identities=15% Similarity=0.161 Sum_probs=116.7
Q ss_pred EEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 78884079999998489999860899899999789809998355778850598601023578997223503799935999
Q 000700 1065 LLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSG 1144 (1344)
Q Consensus 1065 ~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~ 1144 (1344)
.+...++|. ..|++++| ++++++|++|+.||+|+||++........+. ...+|...|.+ ++|+++++
T Consensus 3 ~v~~~~~h~---d~I~~l~f--sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~h~~~V~~----v~f~~~~~ 69 (342)
T d1yfqa_ 3 IVQIEQAPK---DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYKHPLLC----CNFIDNTD 69 (342)
T ss_dssp EEECSSCCS---SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEEEEE----EEEECSSCEEE----EEEEESSS
T ss_pred EEECCCCCC---CCEEEEEE--ECCCCEEEEEECCCEEEEEECCCCCCCEEEE----EECCCCCCEEE----EEEECCCC
T ss_conf 597688998---97888999--5899999999799929999756998636898----85589998899----99958999
Q ss_pred -EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC--CC
Q ss_conf -699998898199998778962466534999998269998759998999997799099998789970268425788--78
Q 000700 1145 -YLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--QQ 1221 (1344)
Q Consensus 1145 -~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~--~h 1221 (1344)
.+++++.||.|++|+..... .......+........ ...++...+++++.|+.+++||++............. ..
T Consensus 70 ~~l~sg~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 70 LQIYVGTVQGEILKVDLIGSP-SFQALTNNEANLGICR-ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSS-SEEECBSCCCCSCEEE-EEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred CEEEECCCCCCEEEEECCCCC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCC
T ss_conf 789981265311454204432-0000011111111111-11111111111012221110202344433023000243001
Q ss_pred CCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC--EEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCC
Q ss_conf 77859999920899999999978992999977888631--599905799869999907-999899996799099996799
Q 000700 1222 VERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHR-HAPIIASGSAKQLIKVFSLEG 1298 (1344)
Q Consensus 1222 ~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~--i~~l~~h~~~ItsLa~sp-~g~~LasgS~Dg~I~Iwd~~g 1298 (1344)
........+.+. +..+++++.||.|++||++..... ..........+.+..+.+ ++..+++++.||.+.+|+.+.
T Consensus 148 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~ 225 (342)
T d1yfqa_ 148 KVKNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SSCCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEEEECC--CCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECC
T ss_conf 200000100016--870246517984788760567634111210254221014676369998788654899599998059
Q ss_pred C-------EEEEEECCCCC--CCCCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 2-------68998345786--4445678738999936997899998898099919
Q 000700 1299 E-------QLGTIRYHHPS--FMAQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1299 ~-------~l~~l~~~h~~--f~~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
. ....+.. +.. ....+...|++++|+|++.+|++|+.||.|++||
T Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 226 QGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCEEECCCCCEEEE-EEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 864011123512565-553147776235431599669844799987999899999
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.1e-22 Score=171.97 Aligned_cols=239 Identities=15% Similarity=0.337 Sum_probs=170.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEE----------------------------
Q ss_conf 8998179999479999999978994999987999378884079999998489----------------------------
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISK---------------------------- 1081 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~Its---------------------------- 1081 (1344)
|...|.+++|+++ +|++++.|+.+++|+............+. ..+..
T Consensus 56 h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 130 (342)
T d2ovrb2 56 HTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHT---STVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130 (342)
T ss_dssp CSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTEEEEEETTSEEEEEESSSCCEE
T ss_pred CCCCEEEEEECCC--CCCCCEECCCCCCCCCCCCCCEECCCCCC---EEEEEEECCCCCCCCCCCCEEEEEEECCCCCCE
T ss_conf 8999899994798--63210000011111111000000012333---047652024652212344403787403556300
Q ss_pred ----------EEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf ----------9998608998999997898099983557788505986010235789972235037999359996999988
Q 000700 1082 ----------LCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE 1151 (1344)
Q Consensus 1082 ----------L~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~ 1151 (1344)
... ......+++++.|+.|++|+... .. .+ ..+.+|...+ ..+..++..+++++.
T Consensus 131 ~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~--~~--~~---~~~~~~~~~~------~~~~~~~~~l~s~~~ 195 (342)
T d2ovrb2 131 HVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPET--ET--CL---HTLQGHTNRV------YSLQFDGIHVVSGSL 195 (342)
T ss_dssp EEEECCSSCEEEE--EECSSCEEEEETTSCEEEEEGGG--TE--EE---EEECCCSSCE------EEEEECSSEEEEEET
T ss_pred EEEECCCCCCEEE--CCCCCEEEEECCCCEEEEEECCC--CE--EE---EEECCCCCCC------CCCCCCCCEEEEEEC
T ss_conf 1110011110000--01333024335898699952523--43--66---7872754442------100689999999958
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 98199998778962466534999998269998759998999997799099998789970268425788787785999992
Q 000700 1152 VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1152 Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~s 1231 (1344)
||.|++||++... ++..+..|... +.++ .+ +++++++|+.||.|++||....+ ....+..+..|...+.++.++
T Consensus 196 dg~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (342)
T d2ovrb2 196 DTSIRVWDVETGN-CIHTLTGHQSL-TSGM-EL--KDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN 269 (342)
T ss_dssp TSCEEEEETTTCC-EEEEECCCCSC-EEEE-EE--ETTEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC
T ss_pred CCEEEEEECCCCE-EEEEECCCCCC-EEEE-EC--CCCEEEEECCCCEEEEEECCCCC-CCCCCCCCCEEEECEEECCCC
T ss_conf 9939995255653-65674166532-0577-06--89999997489889998655442-211122100011010000137
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-----CCCCCEEEEEECCCCCEEEEEECCCE----EEEEECCCC
Q ss_conf 089999999997899299997788863159990-----57998699999079998999967990----999967992
Q 000700 1232 PGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-----AHRGSLSALAVHRHAPIIASGSAKQL----IKVFSLEGE 1299 (1344)
Q Consensus 1232 p~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~-----~h~~~ItsLa~sp~g~~LasgS~Dg~----I~Iwd~~g~ 1299 (1344)
+.++++|+.||.|++||++++ +.+.++. +|.+.|++++|+|++.++++|+.||+ |++||++-+
T Consensus 270 ----~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 270 ----KNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp ----SSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ----CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf ----984499908998999999999-798998623478988978999987999899999689997048999938998
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=7.4e-21 Score=160.88 Aligned_cols=232 Identities=18% Similarity=0.329 Sum_probs=157.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 89981799994799999999789949999879993788840799999984899998608998999997898099983557
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYD 1109 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~ 1109 (1344)
|...|++++| ++++|++|+.|+.|++|+...+........+. ..... + ......++++..++.+++|+...
T Consensus 54 H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 124 (293)
T d1p22a2 54 HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC---EAVLH--L--RFNNGMMVTCSKDRSIAVWDMAS 124 (293)
T ss_dssp CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC---SCEEE--E--ECCTTEEEEEETTSCEEEEECSS
T ss_pred CCCCEEEEEC--CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC--C--CCCCCCEEECCCCCCEEEEECCC
T ss_conf 7787763423--63002100111011000002464100111111---00001--1--11110000013566306861344
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 78850598601023578997223503799935999699998898199998778962466534999998269998759998
Q 000700 1110 QKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGG 1189 (1344)
Q Consensus 1110 ~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~ 1189 (1344)
....... ..+..|...+.. ..+. ...+++++.|+.|++||.++.+ .+..+.++... +..+ .+ ++.
T Consensus 125 ~~~~~~~----~~~~~~~~~v~~----~~~~--~~~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~-v~~~-~~--~~~ 189 (293)
T d1p22a2 125 PTDITLR----RVLVGHRAAVNV----VDFD--DKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRG-IACL-QY--RDR 189 (293)
T ss_dssp SSCCEEE----EEECCCSSCEEE----EEEE--TTEEEEEETTSEEEEEETTTCC-EEEEEECCSSC-EEEE-EE--ETT
T ss_pred CCCCCCC----CCCCCCCCCCCC----CEEC--CCCCCCCCCCCCEEEECCCCCC-EEEEECCCCCC-CCCC-CC--CCC
T ss_conf 5444212----100011354311----0000--0220110699860410078883-88997155445-3221-68--987
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCC--------CCCEE
Q ss_conf 9999977990999987899702684257887877859999920899999999978992999977888--------63159
Q 000700 1190 QLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNH--------KDAYL 1261 (1344)
Q Consensus 1190 ~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~--------~~~i~ 1261 (1344)
.+++++.||.|++||+++.. ...... ++...+..+ .++ +..+++|+.||.|++||+... ...+.
T Consensus 190 ~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~v~~~--~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 261 (293)
T d1p22a2 190 LVVSGSSDNTIRLWDIECGA-CLRVLE---GHEELVRCI--RFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261 (293)
T ss_dssp EEEEEETTSCEEEEETTTCC-EEEEEC---CCSSCEEEE--ECC--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred EEEEECCCCEEEEEECCCCE-EEEEEC---CCCEEEEEC--CCC--CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 58876589989998665561-466521---431000001--454--1079998679979999888886444567754557
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9905799869999907999899996799099996
Q 000700 1262 TIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1262 ~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd 1295 (1344)
.+.+|.+.|++++|+ +.+|++++.||+|++||
T Consensus 262 ~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 262 TLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 845889988999971--99999992299899959
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=5.8e-21 Score=161.67 Aligned_cols=280 Identities=10% Similarity=0.094 Sum_probs=144.2
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 99999789949999879993788840799999984899998608998999997898099983557788505986010235
Q 000700 1045 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1124 (1344)
Q Consensus 1045 ~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~ 1124 (1344)
+++++.+||.|+|||..+++.+.++..+. .+..++| +|||+++++++.||.|++||+.+ ++......++...
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~----~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t--~~~~~~~~i~~~~ 105 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY----AVHISRM--SASGRYLLVIGRDARIDMIDLWA--KEPTKVAEIKIGI 105 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS----SEEEEEE--CTTSCEEEEEETTSEEEEEETTS--SSCEEEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC----CEEEEEE--CCCCCEEEEEECCCCEEEEECCC--CCEEEEEEEECCC
T ss_conf 99997599979999999995999996899----8038999--89999999995899889997568--8604899986788
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCC----------CEEEEEEECCCCCEEEE
Q ss_conf 78997223503799935999699998-89819999877896246653499999----------82699987599989999
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDC----------SISALTASQVHGGQLAA 1193 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~~----------~Vtsl~~~s~dg~~Lvs 1193 (1344)
+|...+.+ +.|+|++.++++++ .++.+++||..+.. +...+..+... ....+ ..++++..++.
T Consensus 106 ~~~~~~~s----~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i-~~s~d~~~~~~ 179 (426)
T d1hzua2 106 EARSVESS----KFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAI-IASHEHPEFIV 179 (426)
T ss_dssp EEEEEEEC----CSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEE-EECSSSSEEEE
T ss_pred CCCCEEEE----EEECCCCCEEEEEECCCCEEEEECCCCCC-EEEEEECCCCCCCCEEECCCCCEEEE-EECCCCCEEEE
T ss_conf 87645885----00268898799963589769998577641-25786226777364364278850389-98787878888
Q ss_pred EEC-CCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEE-----------------------------
Q ss_conf 977-99099998789970268425788787785999992089999999997-----------------------------
Q 000700 1194 GFV-DGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSAS----------------------------- 1243 (1344)
Q Consensus 1194 Gs~-DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs----------------------------- 1243 (1344)
... .+.+.+++........... ..+...+..+.++|+ +++++++.
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (426)
T d1hzua2 180 NVKETGKVLLVNYKDIDNLTVTS---IGAAPFLADGGWDSS--HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254 (426)
T ss_dssp EETTTTEEEEEECSSSSSCEEEE---EECCSSEEEEEECTT--SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred ECCCCCEEEEEEECCCCCEEEEE---ECCCCCCEEEEECCC--CCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCC
T ss_conf 52789769999924665204577---566775376137788--8678864201100000002556278875058744434
Q ss_pred -------------------CCCCEEEEECCCCC------CCEEEEECCCCCEEEEEECCCCCEEEE-------EECCCEE
Q ss_conf -------------------89929999778886------315999057998699999079998999-------9679909
Q 000700 1244 -------------------QAGDIQFLDIRNHK------DAYLTIDAHRGSLSALAVHRHAPIIAS-------GSAKQLI 1291 (1344)
Q Consensus 1244 -------------------~DG~I~IWDl~~~~------~~i~~l~~h~~~ItsLa~sp~g~~Las-------gS~Dg~I 1291 (1344)
.|+.+.+|+..... +...++.+|...+..++|+|++.++++ ++.+++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv 334 (426)
T d1hzua2 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 334 (426)
T ss_dssp CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred CEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEE
T ss_conf 20110069877457741578965988522566520330258689866887636787489986188850679880228879
Q ss_pred EEEEC-CCCEEEEEECCCCCC--CCCCCCCEEEEEEECCCCEEEEE-----ECCCEEEECC
Q ss_conf 99967-992689983457864--44567873899993699789999-----8898099919
Q 000700 1292 KVFSL-EGEQLGTIRYHHPSF--MAQKIGSVNCLTFHPYQVLLAAG-----SADACVSIHS 1344 (1344)
Q Consensus 1292 ~Iwd~-~g~~l~~l~~~h~~f--~~~~~~~V~slafspdg~~Lasg-----s~Dg~I~IWd 1344 (1344)
+|||+ +++...++.. +... ...+...|..++|+|||++++.+ +.||.|+|||
T Consensus 335 ~vwd~~t~~~~~~~~~-~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 335 AVFDLKNLDAKYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp EEEETTCTTSCCEEEC-HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred EEEECCCCCCCEEEEC-CCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 9998987876708950-21102567788518987999999999999724888898299999
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.8e-20 Score=158.07 Aligned_cols=242 Identities=13% Similarity=0.175 Sum_probs=179.8
Q ss_pred CCCCCCCCC-----CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEE
Q ss_conf 851111267-----899817999947999999997899499998799937888407999999848999986089989999
Q 000700 1021 NPIACWDTR-----FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV 1095 (1344)
Q Consensus 1021 ~~i~~Wd~~-----~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Lit 1095 (1344)
..+..|+.. |...|.++.++++. .+++++.|+++++|+....+ .. ..+..+.+ .+++..+++
T Consensus 31 g~v~~Wd~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~---~~~~~~~~--~~~~~~~~~ 97 (287)
T d1pgua2 31 GRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FG---SQPKVASA--NNDGFTAVL 97 (287)
T ss_dssp SCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CS---SCEEEEEE--CSSSEEEEE
T ss_pred CEEEEEECCCCCCCCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCCC-------CC---CCEEEEEE--CCCCCEEEE
T ss_conf 9199998999888877878999965997-28988610122211111111-------12---21014664--167856999
Q ss_pred EECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC-CEEEEEECCCCCEEEEEECCCC
Q ss_conf 978980999835577885059860102357899722350379993599969999889-8199998778962466534999
Q 000700 1096 ASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV-SSIMLWDLEKEQQMVNPIPSSS 1174 (1344)
Q Consensus 1096 gs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~D-g~I~IWDl~s~~~~v~~i~~~~ 1174 (1344)
+.++.+.+|+... +.... .+... .. . ..+++++..+++++.+ +.+++|++.... ....+....
T Consensus 98 -~~~~~~~~~~~~~--~~~~~-----~~~~~-~~--~----~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~~~~~ 161 (287)
T d1pgua2 98 -TNDDDLLILQSFT--GDIIK-----SVRLN-SP--G----SAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDLKTPL 161 (287)
T ss_dssp -ETTSEEEEEETTT--CCEEE-----EEECS-SC--E----EEEEECSSEEEEEETTTSCEEEEETTEEE-EEEECSSCC
T ss_pred -EECCCCEEEECCC--EEEEE-----ECCCC-CE--E----EEEECCCCCEEEECCCCCEEEEEECCCCC-EEEEEEECC
T ss_conf -6033210000110--03543-----10122-20--3----56521475111000221000210001221-000121024
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC--------CCCCEEEEEECCC
Q ss_conf 99826999875999899999779909999878997026842578878778599999208--------9999999997899
Q 000700 1175 DCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG--------LDPAKIVSASQAG 1246 (1344)
Q Consensus 1175 ~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~--------~~g~~Lvsgs~DG 1246 (1344)
...++++ .+++++.+|++|+.||.|++||...+..... ...+|...|.+++|+|. .++.++++|+.|+
T Consensus 162 ~~~v~~~-~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~ 237 (287)
T d1pgua2 162 RAKPSYI-SISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237 (287)
T ss_dssp SSCEEEE-EECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred CCCEEEE-EECCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 7853699-9516765211011111100000023321100---01111111100000136541001267887027664999
Q ss_pred CEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 29999778886315999057998699999079998999967990999967
Q 000700 1247 DIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1247 ~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~ 1296 (1344)
.|++||++.....+..+.+|...|+++.|++++ .+++++.|+.|++|++
T Consensus 238 ~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 599988899975899927878985899998999-8999979992999997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=2.9e-17 Score=135.22 Aligned_cols=257 Identities=13% Similarity=0.142 Sum_probs=129.5
Q ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCEEEEEEEECCCCC
Q ss_conf 99789949999879993788840799999984899998608998999-99789809998355778850598601023578
Q 000700 1048 AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSSIQGH 1126 (1344)
Q Consensus 1048 tgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Li-tgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h 1126 (1344)
+++.+++|.|||.++++.+.++.... ....++| ++|+++|+ +++.++.|++||..+ ++ .+ +.+..+
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~~g~----~p~~va~--spdG~~l~v~~~~~~~i~v~d~~t--~~--~~---~~~~~~ 73 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVI--SPDGTKVYVANAHSNDVSIIDTAT--NN--VI---ATVPAG 73 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSS----SEEEEEE--CTTSSEEEEEEGGGTEEEEEETTT--TE--EE---EEEECS
T ss_pred EECCCCEEEEEECCCCEEEEEEECCC----CCEEEEE--ECCCCEEEEEECCCCEEEEEECCC--CC--EE---EEEECC
T ss_conf 97899989999999995999998899----8369999--289899999978999899999998--94--10---320002
Q ss_pred CCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEE-EEECCCEEEEEE
Q ss_conf 997223503799935999699998-898199998778962466534999998269998759998999-997799099998
Q 000700 1127 KPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLA-AGFVDGSVRLYD 1204 (1344)
Q Consensus 1127 ~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~Lv-sGs~DGsIrIwD 1204 (1344)
. .... +.|++++..+++++ .++.+.+|+..++. ....+..+.. ..++ .+.+++..++ ++..++.+.+|+
T Consensus 74 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 74 S-SPQG----VAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVKTGKS--PLGL-ALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp S-SEEE----EEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECSSS--EEEE-EECTTSSEEEEEETTTTEEEEEE
T ss_pred C-CCCC----CCCCCCCCCCCCCCCCCCEEEECCCCCCE-EEEECCCCCC--CEEE-EEECCCCEEEEEECCCCCEEEEE
T ss_conf 4-6431----10001111111111111001100124302-4320244444--2378-76058971554201111001100
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC-CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 78997026842578878778599999208999999999789-92999977888631599905799869999907999899
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA-GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1283 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~D-G~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~La 1283 (1344)
..+.. ........ ..+..+.++++ +..+++++.+ +.+.+|+.... ........ ......+.+++++..++
T Consensus 145 ~~~~~-~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~g~~~~ 215 (301)
T d1l0qa2 145 TVTKA-VINTVSVG----RSPKGIAVTPD--GTKVYVANFDSMSISVIDTVTN-SVIDTVKV-EAAPSGIAVNPEGTKAY 215 (301)
T ss_dssp TTTTE-EEEEEECC----SSEEEEEECTT--SSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSEEEEEEECTTSSEEE
T ss_pred CCCCC-EEEECCCC----CCCEEEEEECC--CCCEEEECCCCCCCCCCCCCCE-EEEECCCC-CCCCCEEECCCCCCCCC
T ss_conf 01463-03531567----88428886046--5401310121111111111100-01110133-57750311011110111
Q ss_pred EEE---CCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE-EEEECCCEEEECC
Q ss_conf 996---7990999967-99268998345786444567873899993699789-9998898099919
Q 000700 1284 SGS---AKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL-AAGSADACVSIHS 1344 (1344)
Q Consensus 1284 sgS---~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~L-asgs~Dg~I~IWd 1344 (1344)
.++ .++.|.+||. +++.+..+.. + ..+.+++|+|++++| ++++.|+.|++||
T Consensus 216 v~~~~~~~~~v~v~D~~t~~~~~~~~~-~--------~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 216 VTNVDKYFNTVSMIDTGTNKITARIPV-G--------PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEECSSCCEEEEEETTTTEEEEEEEC-C--------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCEEEEEEEEECCCCEEEEEECC-C--------CCEEEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 100210000232365699819999848-9--------98779999189899999989999699999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.5e-19 Score=151.63 Aligned_cols=279 Identities=8% Similarity=-0.007 Sum_probs=150.2
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 99999789949999879993788840799999984899998608998999997898099983557788505986010235
Q 000700 1045 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQ 1124 (1344)
Q Consensus 1045 ~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~ 1124 (1344)
++++.+.+|.|.|||.++++.+..+..+. .+..++| ++|++++++++.||.|++||+.+ ++...+.......
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~----~~~~v~f--SpDG~~l~~~s~dg~v~~~d~~t--~~~~~~~~i~~~~ 105 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRL--SASGRYLFVIGRDGKVNMIDLWM--KEPTTVAEIKIGS 105 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEE--CTTSCEEEEEETTSEEEEEETTS--SSCCEEEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC----CEEEEEE--CCCCCEEEEECCCCCEEEEEEEC--CCCEEEEEEECCC
T ss_conf 99997699979999899983999973799----7137998--89999999982899978998108--9812889984488
Q ss_pred CCCCCCCCCCEEEEEECCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCC----------CCCEEEEEEECCCCCEE-E
Q ss_conf 7899722350379993599969999-8898199998778962466534999----------99826999875999899-9
Q 000700 1125 GHKPGVRCSNVVVDWQQQSGYLYAS-GEVSSIMLWDLEKEQQMVNPIPSSS----------DCSISALTASQVHGGQL-A 1192 (1344)
Q Consensus 1125 ~h~~~V~s~~~~v~ws~~~~~Llaa-g~Dg~I~IWDl~s~~~~v~~i~~~~----------~~~Vtsl~~~s~dg~~L-v 1192 (1344)
+|...+.+ ..|++++.+++++ ..++.|++||..+++ ++..+..+. ......+ .+++++..+ +
T Consensus 106 ~~~~~~~s----~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg~~~~v 179 (432)
T d1qksa2 106 EARSIETS----KMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAI-LASHYRPEFIV 179 (432)
T ss_dssp EEEEEEEC----CSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEE-EECSSSSEEEE
T ss_pred CCCCEEEE----CCCCCCCCEEEEECCCCCEEEEEECCCCC-CEEEECCCCCCCCCEECCCCCCEEEE-EECCCCCEEEE
T ss_conf 98776984----32188888899981789827999076554-22540247764352201688850589-98789998999
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCCCEEEEE-------
Q ss_conf 9977990999987899702684257887877859999920899999999978-99299997788863159990-------
Q 000700 1193 AGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTID------- 1264 (1344)
Q Consensus 1193 sGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~-DG~I~IWDl~~~~~~i~~l~------- 1264 (1344)
+...++.|.+||....+.. ..... .+...+..+.++|+ ++++++++. ++.+.++|.... ..+..+.
T Consensus 180 s~~~~~~i~~~d~~~~~~~-~~~~i--~~g~~~~~~~~spd--g~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~~~~ 253 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNL-KTTEI--SAERFLHDGGLDGS--HRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPH 253 (432)
T ss_dssp EETTTTEEEEEETTCSSEE-EEEEE--ECCSSEEEEEECTT--SCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBC
T ss_pred EECCCCEEEEEECCCCCCC-EEEEE--CCCCCCCCCEECCC--CCEEEEECCCCCEEEEEECCCC-EEEEEECCCCCCCC
T ss_conf 9816882999984378752-27998--33675426538898--8799995166636777614452-68887214862245
Q ss_pred -------------------------------------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C-------C
Q ss_conf -------------------------------------579986999990799989999679909999679-9-------2
Q 000700 1265 -------------------------------------AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-G-------E 1299 (1344)
Q Consensus 1265 -------------------------------------~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~-g-------~ 1299 (1344)
.|...+....+.+++..+++++.+...++|... . .
T Consensus 254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~ 333 (432)
T d1qksa2 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 333 (432)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred CCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEE
T ss_conf 67664101489883102135688358762456655546565777998868997688872688641021126788877035
Q ss_pred EEEEEECCCCC------------------CCCCCCCCEEEEEEECCCCEEEEEE-----CCCEEEECC
Q ss_conf 68998345786------------------4445678738999936997899998-----898099919
Q 000700 1300 QLGTIRYHHPS------------------FMAQKIGSVNCLTFHPYQVLLAAGS-----ADACVSIHS 1344 (1344)
Q Consensus 1300 ~l~~l~~~h~~------------------f~~~~~~~V~slafspdg~~Lasgs-----~Dg~I~IWd 1344 (1344)
.+....+ ..- .+..+...+.+++|+|||++++.+. .+|.|.|||
T Consensus 334 sv~vpDg-~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 334 SVAVFDI-KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp CEEEEEG-GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EEEEEEC-HHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
T ss_conf 9999962-461045567844863343444457899868976798999999999704888888689999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.87 E-value=3.3e-20 Score=156.24 Aligned_cols=252 Identities=11% Similarity=0.025 Sum_probs=177.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 7899817999947999999997899--49999879993788840799999984899998608998999997898099983
Q 000700 1029 RFEKGTKTALLQPFSPIVVAADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWK 1106 (1344)
Q Consensus 1029 ~~~~~I~si~fspdg~~Latgs~dg--~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWd 1106 (1344)
.|...|+++.|+||+++|++++.++ .|++|+.++++.. .+..|. ..+.+++| ++++.+|++++.++.+++|+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~---~~v~~~~~--spdg~~l~~~~~~~~~~~~~ 113 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL---GNVFAMGV--DRNGKFAVVANDRFEIMTVD 113 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC---CSEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCC---CEEEEEEE--CCCCCCCCEECCCCCCCCCC
T ss_conf 6999888899989999999999289989999989999488-750897---12774121--14543210001111100000
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE----------CCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 55778850598601023578997223503799935999699998----------89819999877896246653499999
Q 000700 1107 DYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG----------EVSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1107 i~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag----------~Dg~I~IWDl~s~~~~v~~i~~~~~~ 1176 (1344)
... +.... .+..+...+.+ +.|++++..++.++ .++.+++||..++. .. .+..+..
T Consensus 114 ~~~--~~~~~-----~~~~~~~~~~~----~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~-~~~~~~~- 179 (360)
T d1k32a3 114 LET--GKPTV-----IERSREAMITD----FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF-AATTENS- 179 (360)
T ss_dssp TTT--CCEEE-----EEECSSSCCCC----EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE-ECSCSSS-
T ss_pred CCC--CCEEE-----EEECCCCCCCC----HHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCC-EE-EECCCCC-
T ss_conf 122--21000-----00013552023----01213225665212331211000256542663045571-35-3035432-
Q ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE------EEEECCCC-------------------------------
Q ss_conf 82699987599989999977990999987899702------68425788-------------------------------
Q 000700 1177 SISALTASQVHGGQLAAGFVDGSVRLYDVRTPDML------VCSTRPHT------------------------------- 1219 (1344)
Q Consensus 1177 ~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~------v~~~~~~~------------------------------- 1219 (1344)
.+..+ .++++|+.|++++.++.+++||....... ......+.
T Consensus 180 ~~~~~-~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 258 (360)
T d1k32a3 180 HDYAP-AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258 (360)
T ss_dssp BEEEE-EECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE
T ss_pred CCCCC-CCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEE
T ss_conf 21100-12577999999959985575333544023203641179852469601206877767155311365266540010
Q ss_pred --CCCCCEEEEEEECC-----------CCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf --78778599999208-----------99999999978992999977888631599905799869999907999899996
Q 000700 1220 --QQVERVVGISFQPG-----------LDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGS 1286 (1344)
Q Consensus 1220 --~h~~~I~sI~~sp~-----------~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS 1286 (1344)
...+....+...++ ....++++++.++.+++||+... + ... +.+.+.+++|+|||+.|++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~---~~~~v~~~~~SpDG~~l~~~~ 333 (360)
T d1k32a3 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-K-VTE---VKNNLTDLRLSADRKTVMVRK 333 (360)
T ss_dssp CSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-C-EEE---EEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC-E-EEE---ECCCCCEEEECCCCCEEEEEE
T ss_conf 12476752675413898569999735997069996489987999979997-4-988---648868799999898999997
Q ss_pred CCCEEEEEEC-CCCEEEEEEC
Q ss_conf 7990999967-9926899834
Q 000700 1287 AKQLIKVFSL-EGEQLGTIRY 1306 (1344)
Q Consensus 1287 ~Dg~I~Iwd~-~g~~l~~l~~ 1306 (1344)
.||.|++|++ +++...++..
T Consensus 334 ~Dg~i~v~d~~~~~~~~~~~~ 354 (360)
T d1k32a3 334 DDGKIYTFPLEKPEDERTVET 354 (360)
T ss_dssp TTSCEEEEESSCTTSCEECCC
T ss_pred CCCEEEEEECCCCCCCEEEEE
T ss_conf 899499999999985459984
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3.9e-18 Score=141.46 Aligned_cols=274 Identities=10% Similarity=0.027 Sum_probs=179.3
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCCCCCEEEEEEEEC
Q ss_conf 999999789949999879993788840799999984899998608998999-9978980999835577885059860102
Q 000700 1044 PIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQKDKQKLVTAFSS 1122 (1344)
Q Consensus 1044 ~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Li-tgs~DG~IrIWdi~~~~~~~~lv~~~~~ 1122 (1344)
+++++++.|++|.|||.++++.+..+..+... ..+.+++| ++|+++++ +++.++.|.+||+.+ ++.........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~-~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t--~~~~~~~~~~~ 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG-PTPMVPMV--APGGRIAYATVNKSESLVKIDLVT--GETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT-TCCCCEEE--CTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCB
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCC-CCCCEEEE--CCCCCEEEEEECCCCEEEEEECCC--CCEEEEEECCC
T ss_conf 69999767998999999999499999877889-98237999--999899999978999499999999--92988872477
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE
Q ss_conf 3578997223503799935999699998------------8981999987789624665349999982699987599989
Q 000700 1123 IQGHKPGVRCSNVVVDWQQQSGYLYASG------------EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ 1190 (1344)
Q Consensus 1123 l~~h~~~V~s~~~~v~ws~~~~~Llaag------------~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~ 1190 (1344)
...+...... +.|++++..+++++ .+..+.+||..+.. ....+..+. .+.++ .+++++.+
T Consensus 77 ~~~~~~~~~~----v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~--~~~~~-~~s~dg~~ 148 (337)
T d1pbyb_ 77 PEERVKSLFG----AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPR--QITML-AWARDGSK 148 (337)
T ss_dssp TTEEEECTTC----EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEECCS--SCCCE-EECTTSSC
T ss_pred CCCCCCCEEE----EEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCE-EEEECCCCC--CCEEE-EECCCCCE
T ss_conf 7312540254----8986877579995047762034203455521203566775-988414568--72189-98688888
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEECCCCCCCC---CEEEEEEECC---------------CCCCEEEEEECCCCEEEEE
Q ss_conf 999977990999987899702684257887877---8599999208---------------9999999997899299997
Q 000700 1191 LAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVE---RVVGISFQPG---------------LDPAKIVSASQAGDIQFLD 1252 (1344)
Q Consensus 1191 LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~---~I~sI~~sp~---------------~~g~~Lvsgs~DG~I~IWD 1252 (1344)
+++++. .+.+||..+++ ....+........ ......+.+. ........+..++.+.+||
T Consensus 149 l~~~~~--~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 149 LYGLGR--DLHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EEEESS--SEEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEECC--CCCEEEEECCC-EEEEEECCCCCCCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEE
T ss_conf 999717--75056630372-788861477543311357763140146653124663244410366045403676179998
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEE
Q ss_conf 78886315999057998699999079998999967990999967-99268998345786444567873899993699789
Q 000700 1253 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLL 1331 (1344)
Q Consensus 1253 l~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~L 1331 (1344)
...+......+..+...+..+.+++++.+++.+. +.|++||. +++.+..+.. . ..+.+++|+|+|.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~--~-------~~~~~~~~s~dG~~l 294 (337)
T d1pbyb_ 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NVLESFDLEKNASIKRVPL--P-------HSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SEEEEEETTTTEEEEEEEC--S-------SCCCEEEECTTSCEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC--CCEEEEECCCCCEEEEECC--C-------CCEEEEEECCCCCEE
T ss_conf 6888588898328875058887426613999735--5289998988969999748--9-------988999997899999
Q ss_pred EEEECCCEEEECC
Q ss_conf 9998898099919
Q 000700 1332 AAGSADACVSIHS 1344 (1344)
Q Consensus 1332 asgs~Dg~I~IWd 1344 (1344)
++++.|+.|++||
T Consensus 295 ~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 295 WLGGALGDLAAYD 307 (337)
T ss_dssp EEESBSSEEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9994999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=9.2e-19 Score=145.96 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=187.8
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEEECCCCCCCEE
Q ss_conf 999479999999978994999987999378884079999998489999860899899999-7898099983557788505
Q 000700 1037 ALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQK 1115 (1344)
Q Consensus 1037 i~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litg-s~DG~IrIWdi~~~~~~~~ 1115 (1344)
++|+++++++++++.++.|.+||.++++.+.+++.+. +..+.+++| ++|+++++++ ..++.|.+||..+ ++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~--spDG~~l~v~~~~~~~v~~~d~~t--~~~- 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMM--APDNRTAYVLNNHYGDIYGIDLDT--CKN- 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEE--CTTSSEEEEEETTTTEEEEEETTT--TEE-
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCC--CCCCCEEEE--CCCCCEEEEEECCCCCEEEEECCC--CEE-
T ss_conf 5588999699998699979999999998999999489--997045999--789899999978999399996756--713-
Q ss_pred EEEEEECCC---CCCCCCCCCCEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCCC-CCCEE
Q ss_conf 986010235---78997223503799935999699998------------898199998778962466534999-99826
Q 000700 1116 LVTAFSSIQ---GHKPGVRCSNVVVDWQQQSGYLYASG------------EVSSIMLWDLEKEQQMVNPIPSSS-DCSIS 1179 (1344)
Q Consensus 1116 lv~~~~~l~---~h~~~V~s~~~~v~ws~~~~~Llaag------------~Dg~I~IWDl~s~~~~v~~i~~~~-~~~Vt 1179 (1344)
+..+.... .+...+.. +.|++++..+++++ .++.+.+||..++. ....+..+. ...+.
T Consensus 75 -~~~~~~~~~~~~~~~~~~~----v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 148 (346)
T d1jmxb_ 75 -TFHANLSSVPGEVGRSMYS----FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFPMPRQVY 148 (346)
T ss_dssp -EEEEESCCSTTEEEECSSC----EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEECCSSCC
T ss_pred -EEEECCCCCCCCCCCCEEE----EEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCE-EEEEEEEEECCCCEE
T ss_conf -1231036543454774179----9990588889997057752156514676248998525632-656887310247439
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECC------------------------CC
Q ss_conf 999875999899999779909999878997026842578878778599999208------------------------99
Q 000700 1180 ALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPG------------------------LD 1235 (1344)
Q Consensus 1180 sl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~------------------------~~ 1235 (1344)
.+ ..+.++..++. ++.+.+||..+++ ....+.... ....+.++|+ ..
T Consensus 149 ~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (346)
T d1jmxb_ 149 LM-RAADDGSLYVA---GPDIYKMDVKTGK-YTVALPLRN----WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 219 (346)
T ss_dssp CE-EECTTSCEEEE---SSSEEEECTTTCC-EEEEECSTT----CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred EE-EECCCCEEEEE---CCCCEEEECCCCC-EEEEEECCC----CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 99-95278789984---7962699806997-899996489----866237712552899986499816765123111267
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCC
Q ss_conf 9999999789929999778886315999057998699999079998999967990999967-992689983457864445
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQ 1314 (1344)
Q Consensus 1236 g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~ 1314 (1344)
...+.++..++.+.+||...+.........+...+..+.+++++..++.... +.|.+||. +++.+..+.. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~--~----- 291 (346)
T d1jmxb_ 220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL--D----- 291 (346)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC--S-----
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECC-CEEEEEECCCCCEEEEECC--C-----
T ss_conf 3257540478349999777883687876315660688897179978999429-8389998999939999749--9-----
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 678738999936997899998898099919
Q 000700 1315 KIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1315 ~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
..+.+++|+||+++|++++.|+.|++||
T Consensus 292 --~~~~~va~s~DG~~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 292 --HTYYCVAFDKKGDKLYLGGTFNDLAVFN 319 (346)
T ss_dssp --SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred --CCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf --9778999968999999994899299999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=7.2e-16 Score=125.31 Aligned_cols=245 Identities=11% Similarity=0.144 Sum_probs=182.1
Q ss_pred CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEE-EECCCEEEEEECC
Q ss_conf 99817999947999999-997899499998799937888407999999848999986089989999-9789809998355
Q 000700 1031 EKGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLV-ASCNGNIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~si~fspdg~~La-tgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Lit-gs~DG~IrIWdi~ 1108 (1344)
+..+..++|+|+|++|+ ++..++.|.+||..+++.+..+..+. .+..+.| ++++..+++ +..++.+.+|+..
T Consensus 31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 104 (301)
T d1l0qa2 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----SPQGVAV--SPDGKQVYVTNMASSTLSVIDTT 104 (301)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEEEEE--CTTSSEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC----CCCCCCC--CCCCCCCCCCCCCCCEEEECCCC
T ss_conf 99836999928989999997899989999999894103200024----6431100--01111111111111001100124
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 778850598601023578997223503799935999699998-8981999987789624665349999982699987599
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1109 ~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~d 1187 (1344)
. +.... .+.. .....+ +.|++++..+++++ .++.+.+|+..+.. .+..+..+.. +..+ .+.++
T Consensus 105 ~--~~~~~-----~~~~-~~~~~~----~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~ 168 (301)
T d1l0qa2 105 S--NTVAG-----TVKT-GKSPLG----LALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVGRS--PKGI-AVTPD 168 (301)
T ss_dssp T--TEEEE-----EEEC-SSSEEE----EEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECCSS--EEEE-EECTT
T ss_pred C--CEEEE-----ECCC-CCCCEE----EEEECCCCEEEEEECCCCCEEEEECCCCC-EEEECCCCCC--CEEE-EEECC
T ss_conf 3--02432-----0244-444237----87605897155420111100110001463-0353156788--4288-86046
Q ss_pred CCEEEEEECC-CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC---CCCEEEEECCCCCCCEEEE
Q ss_conf 9899999779-90999987899702684257887877859999920899999999978---9929999778886315999
Q 000700 1188 GGQLAAGFVD-GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKDAYLTI 1263 (1344)
Q Consensus 1188 g~~LvsGs~D-GsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~---DG~I~IWDl~~~~~~i~~l 1263 (1344)
+..++++..+ +.+.+|+..... ........ .....+.++++ +..++.++. ++.|++||..++ +.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~--g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~ 240 (301)
T d1l0qa2 169 GTKVYVANFDSMSISVIDTVTNS-VIDTVKVE----AAPSGIAVNPE--GTKAYVTNVDKYFNTVSMIDTGTN-KITARI 240 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTE-EEEEEECS----SEEEEEEECTT--SSEEEEEEECSSCCEEEEEETTTT-EEEEEE
T ss_pred CCCEEEECCCCCCCCCCCCCCEE-EEECCCCC----CCCCEEECCCC--CCCCCCCCCCCEEEEEEEEECCCC-EEEEEE
T ss_conf 54013101211111111111000-11101335----77503110111--101111002100002323656998-199998
Q ss_pred ECCCCCEEEEEECCCCCEE-EEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 0579986999990799989-9996799099996-79926899834
Q 000700 1264 DAHRGSLSALAVHRHAPII-ASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1264 ~~h~~~ItsLa~sp~g~~L-asgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.. ...+.+++|+|+|+++ ++++.++.|.+|| .+++.+.++..
T Consensus 241 ~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 241 PV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CC-CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEEC
T ss_conf 48-998779999189899999989999699999999959999968
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.82 E-value=2.1e-17 Score=136.27 Aligned_cols=270 Identities=10% Similarity=0.057 Sum_probs=163.4
Q ss_pred CCCCCCCCCC---------CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE--EEECCCCCCCCEEEEEEEEECC
Q ss_conf 8511112678---------9981799994799999999789949999879993788--8407999999848999986089
Q 000700 1021 NPIACWDTRF---------EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLN--SFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1021 ~~i~~Wd~~~---------~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~--~l~~h~~~~~~ItsL~f~ns~d 1089 (1344)
..+..||... +..+..++|+|||+++++++.|+.|++||.++++... .+.....+...+.++.| ++|
T Consensus 42 g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~--spD 119 (426)
T d1hzua2 42 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK--GYE 119 (426)
T ss_dssp TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST--TCT
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEE--CCC
T ss_conf 979999999995999996899803899989999999995899889997568860489998678887645885002--688
Q ss_pred CCEEEEE-ECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC-------------------------------------
Q ss_conf 9899999-78980999835577885059860102357899722-------------------------------------
Q 000700 1090 VSLLLVA-SCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR------------------------------------- 1131 (1344)
Q Consensus 1090 ~~~Litg-s~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~------------------------------------- 1131 (1344)
+++++++ ..++.+++||.... ..... +..+...+.
T Consensus 120 G~~l~v~~~~~~~v~i~d~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 120 DRYTIAGAYWPPQFAIMDGETL--EPKQI-----VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp TTEEEEEEEESSEEEEEETTTC--CEEEE-----EECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCEEEEECCCCC--CEEEE-----EECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEE
T ss_conf 9879996358976999857764--12578-----6226777364364278850389987878788885278976999992
Q ss_pred --------------CCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCCCEEE--E
Q ss_conf --------------3503799935999699998-8981999987789624665349999-98269998759998999--9
Q 000700 1132 --------------CSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSD-CSISALTASQVHGGQLA--A 1193 (1344)
Q Consensus 1132 --------------s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~-~~Vtsl~~~s~dg~~Lv--s 1193 (1344)
.....+.+++++.+++++. .+..+.+++...+. .+..+..... .......+......... .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE-EEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCC-EEEEECCCCCCCCCCEEEEECCCCCCEEEEC
T ss_conf 466520457756677537613778886788642011000000025562-7887505874443420110069877457741
Q ss_pred EECCCEEEEEECCCCC------EEEEEECCCCCCCCCEEEEEEECCCCCCEEEE-------EECCCCEEEEECCCCCCCE
Q ss_conf 9779909999878997------02684257887877859999920899999999-------9789929999778886315
Q 000700 1194 GFVDGSVRLYDVRTPD------MLVCSTRPHTQQVERVVGISFQPGLDPAKIVS-------ASQAGDIQFLDIRNHKDAY 1260 (1344)
Q Consensus 1194 Gs~DGsIrIwDlr~~~------~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvs-------gs~DG~I~IWDl~~~~~~i 1260 (1344)
...|+.+.+|+..... .... ...+|...+..++++|+ ++++++ ++.+++|++||+.++ +..
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~---~l~g~~~~v~~v~~sPd--g~~l~v~~~~~~s~~~~~tv~vwd~~t~-~~~ 345 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVA---ELQGQGGGSLFIKTHPK--SSHLYVDTTFNPDARISQSVAVFDLKNL-DAK 345 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEE---EEECSSSCCCCEECCTT--CSEEEECCTTCSSHHHHTCEEEEETTCT-TSC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEE---EEECCCCCEEEEECCCC--CCEEEEEECCCCCCCCCCEEEEEECCCC-CCC
T ss_conf 57896598852256652033025868---98668876367874899--8618885067988022887999989878-767
Q ss_pred EEEE---------CCCCCEEEEEECCCCCEEE-EE----ECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 9990---------5799869999907999899-99----6799099996-79926899834
Q 000700 1261 LTID---------AHRGSLSALAVHRHAPIIA-SG----SAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1261 ~~l~---------~h~~~ItsLa~sp~g~~La-sg----S~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.++. .+...+..++|+|+|+.++ ++ +.++.|+||| .+.+....+++
T Consensus 346 ~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEECCCHHCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 0895021102567788518987999999999999724888898299999998738999878
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=1e-15 Score=124.32 Aligned_cols=272 Identities=7% Similarity=-0.028 Sum_probs=164.9
Q ss_pred CCCCCCCCCC---------CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEEECCCCCCCCEEEEEEEEECC
Q ss_conf 8511112678---------9981799994799999999789949999879993--7888407999999848999986089
Q 000700 1021 NPIACWDTRF---------EKGTKTALLQPFSPIVVAADENERIKIWNYEEDT--LLNSFDNHDFPDKGISKLCLVNELD 1089 (1344)
Q Consensus 1021 ~~i~~Wd~~~---------~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~--~i~~l~~h~~~~~~ItsL~f~ns~d 1089 (1344)
+.+..||... +..+..++|+|||+++++++.|+.+++||+.+++ ....+.....+...+.+..| ++|
T Consensus 42 g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~--SpD 119 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME--GWE 119 (432)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST--TCT
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCC--CCC
T ss_conf 979999899983999973799713799889999999982899978998108981288998448898776984321--888
Q ss_pred CCEE-EEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC-------CCCEEEEEECCCCEEEEE-ECCCEEEEEEC
Q ss_conf 9899-99978980999835577885059860102357899722-------350379993599969999-88981999987
Q 000700 1090 VSLL-LVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR-------CSNVVVDWQQQSGYLYAS-GEVSSIMLWDL 1160 (1344)
Q Consensus 1090 ~~~L-itgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~-------s~~~~v~ws~~~~~Llaa-g~Dg~I~IWDl 1160 (1344)
+++| ++++.++.|++||..+ ++.... +..+...+. .-...+.+++++..++++ ..++.|.+||.
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGET--LEPKKI-----QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTT--CCEEEE-----EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred CCEEEEECCCCCEEEEEECCC--CCCEEE-----ECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 888999817898279990765--542254-----0247764352201688850589987899989999816882999984
Q ss_pred CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEEEEEECC----------------------
Q ss_conf 789624665349999982699987599989999977-990999987899702684257----------------------
Q 000700 1161 EKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLVCSTRP---------------------- 1217 (1344)
Q Consensus 1161 ~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~-DGsIrIwDlr~~~~~v~~~~~---------------------- 1217 (1344)
...+ .........+..+..+ .++++++++++++. ++.+.++|....+. +.....
T Consensus 193 ~~~~-~~~~~~i~~g~~~~~~-~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 269 (432)
T d1qksa2 193 TDLN-NLKTTEISAERFLHDG-GLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDTGGQTPHPGRGANFVHPTFGPVW 269 (432)
T ss_dssp TCSS-EEEEEEEECCSSEEEE-EECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred CCCC-CCEEEEECCCCCCCCC-EECCCCCEEEEECCCCCEEEEEECCCCEE-EEEECCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 3787-5227998336754265-38898879999516663677761445268-8872148622456766410148988310
Q ss_pred -------------------CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCC---------------------
Q ss_conf -------------------8878778599999208999999999789929999778886---------------------
Q 000700 1218 -------------------HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHK--------------------- 1257 (1344)
Q Consensus 1218 -------------------~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~--------------------- 1257 (1344)
+..|...+....+.++ +..+++++.++..++|+.....
T Consensus 270 ~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~--g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s 347 (432)
T d1qksa2 270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 347 (432)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCC--CCEEEEEECCCCCCEEECCCCCCCCCEEEEEEEEECHHHCCCC
T ss_conf 21356883587624566555465657779988689--9768887268864102112678887703599999624610455
Q ss_pred --CCEEEE--------ECCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEE-CCCCEEEEEEC
Q ss_conf --315999--------05799869999907999899996-----799099996-79926899834
Q 000700 1258 --DAYLTI--------DAHRGSLSALAVHRHAPIIASGS-----AKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1258 --~~i~~l--------~~h~~~ItsLa~sp~g~~LasgS-----~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
..++.+ ..|...+..++|+|+|+.++.+. .++.|.||| .+.+....++.
T Consensus 348 ~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 348 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 67844863343444457899868976798999999999704888888689999999558868468
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=4.1e-14 Score=112.84 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=31.3
Q ss_pred EEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 9978992999977888631599905799869999907999--899996799099996-79926899834
Q 000700 1241 SASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1241 sgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~--~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
....++.+.+||..++ +.+..+. +...+.+++|+|+|+ ++++++.|+.|++|| .+++.+.++..
T Consensus 293 ~~~~~~~v~~~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVG-QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred EECCCCEEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 6258986999989999-6989866-89982589999899989999967999299999999989999888
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.2e-14 Score=116.56 Aligned_cols=277 Identities=12% Similarity=0.157 Sum_probs=147.6
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEE--CCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEEEE
Q ss_conf 99999789949999879993788840--799999984899998608998999997-898099983557788505986010
Q 000700 1045 IVVAADENERIKIWNYEEDTLLNSFD--NHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFS 1121 (1344)
Q Consensus 1045 ~Latgs~dg~I~IWd~~tg~~i~~l~--~h~~~~~~ItsL~f~ns~d~~~Litgs-~DG~IrIWdi~~~~~~~~lv~~~~ 1121 (1344)
.++++..++.|++|++++...+..++ .+. +.+.+++| ++|+++|++++ .|+.|++|++.......+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---~~v~~la~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~--- 77 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA--- 77 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCC---CCEEEEEE--ECCCCEEEEEECCCCEEEEEEEECCCCCEEEEE---
T ss_conf 9998789993899998399976999997579---98868999--589799999977899699999968987079853---
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEE--ECCCCCCCEEEEEEECCCCCEEEEEEC-C
Q ss_conf 23578997223503799935999699998-8981999987789624665--349999982699987599989999977-9
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNP--IPSSSDCSISALTASQVHGGQLAAGFV-D 1197 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~--i~~~~~~~Vtsl~~~s~dg~~LvsGs~-D 1197 (1344)
...+...... ++|++++.++++++ .++.|.+|+..... .... ...+.. .+.++ .++++++.++.++. +
T Consensus 78 -~~~~~~~p~~----l~~spDg~~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~-~~~~v-~~s~d~~~~~~~~~~~ 149 (333)
T d1ri6a_ 78 -ESALPGSLTH----ISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDVVEGLD-GCHSA-NISPDNRTLWVPALKQ 149 (333)
T ss_dssp -EEECSSCCSE----EEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEEECCCT-TBCCC-EECTTSSEEEEEEGGG
T ss_pred -ECCCCCCCEE----EEECCCCCEEEECCCCCCCEEEECCCCCC-CEECCCCCCCCC-CCEEE-EEEECCEEEECCCCCC
T ss_conf -0136998549----99959998874205688830220011100-000010037785-31498-8630101310256554
Q ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCCCCCEE---EEE------C
Q ss_conf 9099998789970268425--788787785999992089999999997-899299997788863159---990------5
Q 000700 1198 GSVRLYDVRTPDMLVCSTR--PHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNHKDAYL---TID------A 1265 (1344)
Q Consensus 1198 GsIrIwDlr~~~~~v~~~~--~~~~h~~~I~sI~~sp~~~g~~Lvsgs-~DG~I~IWDl~~~~~~i~---~l~------~ 1265 (1344)
..+.+|+............ ...........+.|+++ +..++... ..+...+|+......... ... .
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 227 (333)
T d1ri6a_ 150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN--EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 227 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT--SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred CEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECC--CEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCC
T ss_conf 20568973268741001000133403887527999602--0147862046672178851035552021002234306877
Q ss_pred CCCCEEEEEECCCCCEEEE-EECCCEEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC-CCEEEE
Q ss_conf 7998699999079998999-9679909999679-926899834578644456787389999369978999988-980999
Q 000700 1266 HRGSLSALAVHRHAPIIAS-GSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA-DACVSI 1342 (1344)
Q Consensus 1266 h~~~ItsLa~sp~g~~Las-gS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~-Dg~I~I 1342 (1344)
.......+.++++++++.. +..++.+.+|+.. ......+.. +. .....+.+++|+|+|++|++++. ++.|++
T Consensus 228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG-FQ----PTETQPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE-EE----ECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred CCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEE-EE----CCCCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 6553126899515672055045688278788739997899999-96----789976289990798999999889993999
Q ss_pred CC
Q ss_conf 19
Q 000700 1343 HS 1344 (1344)
Q Consensus 1343 Wd 1344 (1344)
|+
T Consensus 303 ~~ 304 (333)
T d1ri6a_ 303 YE 304 (333)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=5.1e-15 Score=119.27 Aligned_cols=249 Identities=12% Similarity=0.129 Sum_probs=173.5
Q ss_pred CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEEECCCCC--CCCEEEEEEEEECCCCEEEEEEC----------
Q ss_conf 9817999947999999-9978994999987999378884079999--99848999986089989999978----------
Q 000700 1032 KGTKTALLQPFSPIVV-AADENERIKIWNYEEDTLLNSFDNHDFP--DKGISKLCLVNELDVSLLLVASC---------- 1098 (1344)
Q Consensus 1032 ~~I~si~fspdg~~La-tgs~dg~I~IWd~~tg~~i~~l~~h~~~--~~~ItsL~f~ns~d~~~Litgs~---------- 1098 (1344)
..+..++|+|||++++ +++.++.|.+||+.+++.+..+..+... ...+..+.| ++++..++++..
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE--CCCCCEEEEEECCCCCEEEECC
T ss_conf 98237999999899999978999499999999929888724777312540254898--6877579995047762034203
Q ss_pred --CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf --980999835577885059860102357899722350379993599969999889819999877896246653499999
Q 000700 1099 --NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDC 1176 (1344)
Q Consensus 1099 --DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~ 1176 (1344)
++.+.+|+..+ +.... .+. +...+.. +.|++++..+++++.+ +.+||..+++ ....+..+...
T Consensus 112 ~~~~~~~~~d~~~--~~~~~-----~~~-~~~~~~~----~~~s~dg~~l~~~~~~--~~~~d~~~~~-~~~~~~~~~~~ 176 (337)
T d1pbyb_ 112 VQPTRVALYDAET--LSRRK-----AFE-APRQITM----LAWARDGSKLYGLGRD--LHVMDPEAGT-LVEDKPIQSWE 176 (337)
T ss_dssp ECCCEEEEEETTT--TEEEE-----EEE-CCSSCCC----EEECTTSSCEEEESSS--EEEEETTTTE-EEEEECSTTTT
T ss_pred CCCCCEEECCCCC--CEEEE-----ECC-CCCCCEE----EEECCCCCEEEEECCC--CCEEEEECCC-EEEEEECCCCC
T ss_conf 4555212035667--75988-----414-5687218----9986888889997177--5056630372-78886147754
Q ss_pred CEEEE---------------------EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 82699---------------------987599989999977990999987899702684257887877859999920899
Q 000700 1177 SISAL---------------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1177 ~Vtsl---------------------~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~ 1235 (1344)
..... .....+......+..++.+.+||...+........ .+...+..+.++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 251 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPA-- 251 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTT--
T ss_pred CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC---CCCCCEEEEEECCC--
T ss_conf 3311357763140146653124663244410366045403676179998688858889832---88750588874266--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 999999978992999977888631599905799869999907999899996799099996-79926899834
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1236 g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
+..++.+ ++.|++||+.++ +.+..+. +...+.+++|+|+|.++++++.++.|.+|| .+++.+.+++.
T Consensus 252 ~~~~~~~--~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 252 KTRAFGA--YNVLESFDLEKN-ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEC--CCCEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 1399973--552899989889-6999974-899889999978999999994999299999998769899988
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.5e-14 Score=111.88 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=142.0
Q ss_pred EEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE----------CC
Q ss_conf 7999947999999997-----89949999879993788840799999984899998608998999997----------89
Q 000700 1035 KTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS----------CN 1099 (1344)
Q Consensus 1035 ~si~fspdg~~Latgs-----~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs----------~D 1099 (1344)
...+.+|++..+++.. ..+.|.+||..+++.+.++..+. ...++| ++|+++|++.+ .+
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-----~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-----LPNPVV--ADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-----SCEEEE--CTTSSCEEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCC-----CCCEEE--CCCCCEEEEEECCCCCCCCCCCC
T ss_conf 74765899999999826647776719999999994999998999-----985699--48999999996777642015899
Q ss_pred CEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 809998355778850598601023578997223503799935999699998--898199998778962466534999998
Q 000700 1100 GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCS 1177 (1344)
Q Consensus 1100 G~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag--~Dg~I~IWDl~s~~~~v~~i~~~~~~~ 1177 (1344)
+.|++||..+ ++.... ......+...+......+.|++++..++++. .+..+.+||..++. .+..+......
T Consensus 78 ~~v~v~D~~t--~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 151 (355)
T d2bbkh_ 78 DYVEVFDPVT--LLPTAD--IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCY- 151 (355)
T ss_dssp EEEEEECTTT--CCEEEE--EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEE-
T ss_pred CEEEEEECCC--CCEEEE--EECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCC-
T ss_conf 9899999999--979889--80588640311798734999338871577327988204543057883-76677058740-
Q ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-EC-CCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCC
Q ss_conf 2699987599989999977990999987899702684-25-788787785999992089999999997899299997788
Q 000700 1178 ISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCS-TR-PHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRN 1255 (1344)
Q Consensus 1178 Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~-~~-~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~ 1255 (1344)
... .......++.+.||....+........... .. ....+...+....+.+. +..++.++.++.+++|+...
T Consensus 152 -~~~---~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~ 225 (355)
T d2bbkh_ 152 -HIF---PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK--AGRLVWPTYTGKIHQIDLSS 225 (355)
T ss_dssp -EEE---EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT--TTEEEEEBTTSEEEEEECTT
T ss_pred -EEE---ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCC--CCEEEEECCCCEEEEEECCC
T ss_conf -473---069963699938999899983478737999624333000110610215389--97388746998299996589
Q ss_pred CCCC-EEEEECC----------CCCEEEEEECCCCCEEEEEECC----------CEEEEEE-CCCCEEEEEECCCCCCCC
Q ss_conf 8631-5999057----------9986999990799989999679----------9099996-799268998345786444
Q 000700 1256 HKDA-YLTIDAH----------RGSLSALAVHRHAPIIASGSAK----------QLIKVFS-LEGEQLGTIRYHHPSFMA 1313 (1344)
Q Consensus 1256 ~~~~-i~~l~~h----------~~~ItsLa~sp~g~~LasgS~D----------g~I~Iwd-~~g~~l~~l~~~h~~f~~ 1313 (1344)
+... +.....+ ......+++++++..++....+ ..|.+|| .+++.+..+.. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~----- 299 (355)
T d2bbkh_ 226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-G----- 299 (355)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-E-----
T ss_pred CCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-C-----
T ss_conf 9079984457844126854330351089998079976788740687126517997599986788849899668-9-----
Q ss_pred CCCCCEEEEEEECCCC--EEEEEECCCEEEECC
Q ss_conf 5678738999936997--899998898099919
Q 000700 1314 QKIGSVNCLTFHPYQV--LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1314 ~~~~~V~slafspdg~--~Lasgs~Dg~I~IWd 1344 (1344)
..+.+++|+|+++ ++++++.|+.|++||
T Consensus 300 ---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 300 ---HEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp ---EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ---CCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf ---987799992899969999978999899999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.69 E-value=6.5e-12 Score=97.09 Aligned_cols=281 Identities=12% Similarity=-0.028 Sum_probs=179.2
Q ss_pred CCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC------
Q ss_conf 899817999947999999997-----899499998799937888407999999848999986089989999978------
Q 000700 1030 FEKGTKTALLQPFSPIVVAAD-----ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC------ 1098 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs-----~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~------ 1098 (1344)
+..++..++++|+++.+++.. ..+.|.+||.++++.+..+..+. . ..+.| ++|++++++++.
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---~--~~~a~--SpDG~~l~va~~~~~~~~ 91 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---L--PNPVA--AHSGSEFALASTSFSRIA 91 (373)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC---C--CCEEE--CCCCCEEEEEEECCCCCC
T ss_conf 7898656301899978999734225787659999899997999995798---8--60798--689998999960577532
Q ss_pred ----CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC---CCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEE
Q ss_conf ----980999835577885059860102357899722---3503799935999699998--8981999987789624665
Q 000700 1099 ----NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR---CSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNP 1169 (1344)
Q Consensus 1099 ----DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~---s~~~~v~ws~~~~~Llaag--~Dg~I~IWDl~s~~~~v~~ 1169 (1344)
++.|.+||..+ ++.... +..+..... .....+.|++++..+++.. .++.+.+|+....+ ....
T Consensus 92 ~~~~~~~v~v~D~~t--~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~ 163 (373)
T d2madh_ 92 KGKRTDYVEVFDPVT--FLPIAD-----IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-DDQL 163 (373)
T ss_pred CCCCCEEEEEEECCC--CCEEEE-----EECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCE-EEEE
T ss_conf 124531899997778--938889-----72688513685168970899858993799998698746776236872-8998
Q ss_pred ECCCCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCC--CCCCCEEEEEEECCCCCCEEEEEECCC
Q ss_conf 34999998269998759998-999997799099998789970268425788--787785999992089999999997899
Q 000700 1170 IPSSSDCSISALTASQVHGG-QLAAGFVDGSVRLYDVRTPDMLVCSTRPHT--QQVERVVGISFQPGLDPAKIVSASQAG 1246 (1344)
Q Consensus 1170 i~~~~~~~Vtsl~~~s~dg~-~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~--~h~~~I~sI~~sp~~~g~~Lvsgs~DG 1246 (1344)
... ..++ .+.+++. .+++.+.||.+.+||............... +.........+.++ ..++..+.++
T Consensus 164 ~~~-----~~~~-~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 234 (373)
T d2madh_ 164 LSS-----PTCY-HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS---GRIVWPVYSG 234 (373)
T ss_pred ECC-----CEEE-EEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCC---CEEEEECCCC
T ss_conf 245-----2069-996289919999947993999974774266788630036675304345887899---4299925896
Q ss_pred CEEEEECCCCCCCE--EEEECC----------CCCEEEEEECCCCCEE----------EEEECCCEEEEEE-CCCCEEEE
Q ss_conf 29999778886315--999057----------9986999990799989----------9996799099996-79926899
Q 000700 1247 DIQFLDIRNHKDAY--LTIDAH----------RGSLSALAVHRHAPII----------ASGSAKQLIKVFS-LEGEQLGT 1303 (1344)
Q Consensus 1247 ~I~IWDl~~~~~~i--~~l~~h----------~~~ItsLa~sp~g~~L----------asgS~Dg~I~Iwd-~~g~~l~~ 1303 (1344)
.+.+|+.... ... .....+ ......+.+++++..+ ++...++.+.+|| .+++.+..
T Consensus 235 ~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~ 313 (373)
T d2madh_ 235 KILQADISAA-GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred EEEEEECCCC-EEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 5999976899-078977630564757866413674133577149975999548882478625898699998999969898
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCC--EEEEEECCCEEEECC
Q ss_conf 83457864445678738999936997--899998898099919
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFHPYQV--LLAAGSADACVSIHS 1344 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafspdg~--~Lasgs~Dg~I~IWd 1344 (1344)
+.. . ..+.+++|+|||+ ++++++.|+.|++||
T Consensus 314 ~~~--~-------~~~~~~a~spDG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 314 ISL--G-------HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ECC--C-------CCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf 668--9-------982589999899989999967999299999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=1e-13 Score=109.92 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=168.3
Q ss_pred CCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEEEEECCCCCC---CCEEEEEEEEECCCCEEEEEEC-------
Q ss_conf 8998179999479999999-9789949999879993788840799999---9848999986089989999978-------
Q 000700 1030 FEKGTKTALLQPFSPIVVA-ADENERIKIWNYEEDTLLNSFDNHDFPD---KGISKLCLVNELDVSLLLVASC------- 1098 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Lat-gs~dg~I~IWd~~tg~~i~~l~~h~~~~---~~ItsL~f~ns~d~~~Litgs~------- 1098 (1344)
+...+..+.|+|||+++++ +..++.|.+||+.+++.+..+....... ..+..+.| ++|+.++++++.
T Consensus 38 ~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~ 115 (346)
T d1jmxb_ 38 DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLND 115 (346)
T ss_dssp SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSS
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEE--ECCCCEEEEEECCCCCEEE
T ss_conf 99970459997898999999789993999967567131231036543454774179999--0588889997057752156
Q ss_pred -----CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf -----980999835577885059860102357899722350379993599969999889819999877896246653499
Q 000700 1099 -----NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS 1173 (1344)
Q Consensus 1099 -----DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~ 1173 (1344)
++.+.+|+..+......+. .. .....+.. +.++ +++.+++.+ +.+.+|+..++. .+..+..+
T Consensus 116 ~~~~~~~~i~~~~~~~~~~~~~~~----~~-~~~~~~~~----~~~~-~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 182 (346)
T d1jmxb_ 116 HYVVKPPRLEVFSTADGLEAKPVR----TF-PMPRQVYL----MRAA-DDGSLYVAG--PDIYKMDVKTGK-YTVALPLR 182 (346)
T ss_dssp CEEECCCEEEEEEGGGGGGBCCSE----EE-ECCSSCCC----EEEC-TTSCEEEES--SSEEEECTTTCC-EEEEECST
T ss_pred EECCCCCEEEEEECCCCEEEEEEE----EE-ECCCCEEE----EEEC-CCCEEEEEC--CCCEEEECCCCC-EEEEEECC
T ss_conf 514676248998525632656887----31-02474399----9952-787899847--962699806997-89999648
Q ss_pred CCCCEEEE-------------------------EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 99982699-------------------------98759998999997799099998789970268425788787785999
Q 000700 1174 SDCSISAL-------------------------TASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGI 1228 (1344)
Q Consensus 1174 ~~~~Vtsl-------------------------~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI 1228 (1344)
... ..+ .........+.++..++.+.+||..++........ .+...+..+
T Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 257 (346)
T d1jmxb_ 183 NWN--RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---DLTELYFTG 257 (346)
T ss_dssp TCC--CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---ECSSCEEEE
T ss_pred CCC--CCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCEEEEE
T ss_conf 986--623771255289998649981676512311126732575404783499997778836878763---156606888
Q ss_pred EEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECC
Q ss_conf 9920899999999978992999977888631599905799869999907999899996799099996-799268998345
Q 000700 1229 SFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFS-LEGEQLGTIRYH 1307 (1344)
Q Consensus 1229 ~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~~ 1307 (1344)
.++++ +..++.+.. +.|.+||..++ +.+..+. +...+.+++|+|+|+.+++++.|+.|++|| .+++.+.++..
T Consensus 258 ~~~~~--~~~~~~~~~-~~v~v~d~~~~-~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~- 331 (346)
T d1jmxb_ 258 LRSPK--DPNQIYGVL-NRLAKYDLKQR-KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL- 331 (346)
T ss_dssp EECSS--CTTEEEEEE-SEEEEEETTTT-EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC-
T ss_pred EEECC--CCEEEEECC-CEEEEEECCCC-CEEEEEC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEC-
T ss_conf 97179--978999429-83899989999-3999974-999778999968999999994899299999965879799988-
Q ss_pred CC
Q ss_conf 78
Q 000700 1308 HP 1309 (1344)
Q Consensus 1308 h~ 1309 (1344)
..
T Consensus 332 p~ 333 (346)
T d1jmxb_ 332 PG 333 (346)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.7e-12 Score=101.21 Aligned_cols=252 Identities=10% Similarity=0.148 Sum_probs=163.2
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 899817999947999999997-899499998799937888407999999848999986089989999978-980999835
Q 000700 1030 FEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1107 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs-~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~-DG~IrIWdi 1107 (1344)
++..+..++|+|||++|++++ .++.|++|++........+..+...+..+..++| ++|+++|++++. ++.|.+|+.
T Consensus 35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~--spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST--DHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE--CTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEE--CCCCCEEEECCCCCCCEEEECC
T ss_conf 79988689995897999999778996999999689870798530136998549999--5999887420568883022001
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEE-----EECCCCCCCEEEE
Q ss_conf 5778850598601023578997223503799935999699998-898199998778962466-----5349999982699
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVN-----PIPSSSDCSISAL 1181 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~-----~i~~~~~~~Vtsl 1181 (1344)
.. ...... .....+...+.+ +.+++++..+++++ .+..|.+|+..... ... ............+
T Consensus 113 ~~--~~~~~~---~~~~~~~~~~~~----v~~s~d~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~g~~p~~i 182 (333)
T d1ri6a_ 113 ED--GLPVGV---VDVVEGLDGCHS----ANISPDNRTLWVPALKQDRICLFTVSDDG-HLVAQDPAEVTTVEGAGPRHM 182 (333)
T ss_dssp ET--TEEEEE---EEEECCCTTBCC----CEECTTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEEEEECSTTCCEEEE
T ss_pred CC--CCCEEC---CCCCCCCCCCEE----EEEEECCEEEECCCCCCCEEEEEEECCCC-CCEEEECEEEEEECCCCCCEE
T ss_conf 11--000000---100377853149----88630101310256554205689732687-410010001334038875279
Q ss_pred EEECCCCCEEEEE-ECCCEEEEEECCCCCEEEE---EEC---CCCCCCCCEEEEEEECCCCCCEEEE-EECCCCEEEEEC
Q ss_conf 9875999899999-7799099998789970268---425---7887877859999920899999999-978992999977
Q 000700 1182 TASQVHGGQLAAG-FVDGSVRLYDVRTPDMLVC---STR---PHTQQVERVVGISFQPGLDPAKIVS-ASQAGDIQFLDI 1253 (1344)
Q Consensus 1182 ~~~s~dg~~LvsG-s~DGsIrIwDlr~~~~~v~---~~~---~~~~h~~~I~sI~~sp~~~g~~Lvs-gs~DG~I~IWDl 1253 (1344)
.+++++..++.. ...+...+++......... ... ...........+.++++ +++++. +..++.+.+|++
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~~~~~~~~~~~~~~~~~ 259 (333)
T d1ri6a_ 183 -VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD--GRHLYACDRTASLITVFSV 259 (333)
T ss_dssp -EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT--SSEEEEEETTTTEEEEEEE
T ss_pred -EEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECC--CCCEEEECCCCCEEEEEEE
T ss_conf -9960201478620466721788510355520210022343068776553126899515--6720550456882787887
Q ss_pred CCCCCCEEE--EECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEEC
Q ss_conf 888631599--905799869999907999899996-7990999967
Q 000700 1254 RNHKDAYLT--IDAHRGSLSALAVHRHAPIIASGS-AKQLIKVFSL 1296 (1344)
Q Consensus 1254 ~~~~~~i~~--l~~h~~~ItsLa~sp~g~~LasgS-~Dg~I~Iwd~ 1296 (1344)
......... .......+.+++|+|+|++|++++ .++.|.+|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 3999789999996789976289990798999999889993999999
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=4.1e-13 Score=105.69 Aligned_cols=238 Identities=15% Similarity=0.191 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHCHH--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 74235788751014--5878999999973179879999886075366688505782456669999999886059122335
Q 000700 457 EQLPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVD 534 (1344)
Q Consensus 457 ~~lP~vLq~Lls~~--~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~ 534 (1344)
|.+|++.++|.++. .+..|+..|+....-++-.+...+..|+++.+++++++...+.+..++.+++.++.........
T Consensus 162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~ 241 (503)
T d1wa5b_ 162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 241 (503)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 87478999855997158999999999985411899998874135563012045688899999999999984687420479
Q ss_pred HHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55337801243311688883677889999999995189212278884456999999531799999999888999999999
Q 000700 535 LVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCL 614 (1344)
Q Consensus 535 l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~L 614 (1344)
....++..+++..+...+ ++.+..+|.+|+.++.+........++.+++..+..++. .+++.++..++.+|
T Consensus 242 ~~~~~~l~~l~~~l~~~d--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~v~~~al~~l 312 (503)
T d1wa5b_ 242 SVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-------HESTLVQTPALRAV 312 (503)
T ss_dssp HHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
T ss_conf 999999999998723563--899999999987532277111100112233111011025-------78636445677777
Q ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 97411454888840025804667421069997789999999964003476777899889988773899999999999997
Q 000700 615 GKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLL 694 (1344)
Q Consensus 615 g~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll 694 (1344)
+.+..+.+......++.++...+..++.++.+.||.+++.+|+.+.... ......-.+..+...++
T Consensus 313 ~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~--------------~~~~~~i~~~~~l~~li 378 (503)
T d1wa5b_ 313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN--------------TEQIQAVIDANLIPPLV 378 (503)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------------HHHHHHHHHCCCCCHHH
T ss_conf 7787788887876312340999999963997888999987788886146--------------98889999714652367
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 63058995239999999999996
Q 000700 695 TVVSDGSPLVRAEVAVALARFAF 717 (1344)
Q Consensus 695 ~~~~D~sp~VR~e~~~~l~~~~~ 717 (1344)
.....+++.|++|++++++.+..
T Consensus 379 ~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 379 KLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 76026873689999999999973
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=2.5e-13 Score=107.21 Aligned_cols=250 Identities=9% Similarity=0.042 Sum_probs=154.6
Q ss_pred EEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCC----CCCEEEEEEEEECCCCEEEEEE--
Q ss_conf 17999947999999997----------8994999987999378884079999----9984899998608998999997--
Q 000700 1034 TKTALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS-- 1097 (1344)
Q Consensus 1034 I~si~fspdg~~Latgs----------~dg~I~IWd~~tg~~i~~l~~h~~~----~~~ItsL~f~ns~d~~~Litgs-- 1097 (1344)
...++|+||+++|++++ .++.|.+||..+++.+..+..+... +.....+.| ++++..+++++
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFS 126 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECS
T ss_pred CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEE--ECCCCEEEEECCC
T ss_conf 98569948999999996777642015899989999999997988980588640311798734999--3388715773279
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCC---CCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCC
Q ss_conf 8980999835577885059860102357899722---3503799935999699998-89819999877896246653499
Q 000700 1098 CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVR---CSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSS 1173 (1344)
Q Consensus 1098 ~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~---s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~ 1173 (1344)
.+..+.+|+..+ ++. +. .+........ .....+.+++++..+++.. .++.+.+++..... . .
T Consensus 127 ~~~~~~~~~~~~--~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-~------~ 192 (355)
T d2bbkh_ 127 PAPAVGVVDLEG--KAF--KR---MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-P------E 192 (355)
T ss_dssp SSCEEEEEETTT--TEE--EE---EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-C------T
T ss_pred CCCEEEEEECCC--CCE--EE---EEECCCCCEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC-C------E
T ss_conf 882045430578--837--66---77058740473069963699938999899983478737999624333-0------0
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCC----------CCCEEEEEEECCCCCCEEEEEE
Q ss_conf 999826999875999899999779909999878997026842578878----------7785999992089999999997
Q 000700 1174 SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQ----------VERVVGISFQPGLDPAKIVSAS 1243 (1344)
Q Consensus 1174 ~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h----------~~~I~sI~~sp~~~g~~Lvsgs 1243 (1344)
....+... .+..++..++.++.+|.+++|+...+..... .....+ ......+.++++ +..++...
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~d--~~~~~~~~ 267 (355)
T d2bbkh_ 193 DEFLINHP-AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGGWQQVAYHRA--LDRIYLLV 267 (355)
T ss_dssp TSCBCSCC-EEETTTTEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECSSSCEEEETT--TTEEEEEE
T ss_pred ECCEEEEC-CCCCCCCEEEEECCCCEEEEEECCCCCEEEE--ECCCCCCCCEEEEEEECCCEEEEEEECC--CCEEEEEE
T ss_conf 01106102-1538997388746998299996589907998--4457844126854330351089998079--97678874
Q ss_pred CC----------CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 89----------92999977888631599905799869999907999--899996799099996-79926899834
Q 000700 1244 QA----------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1244 ~D----------G~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~--~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.+ ..|.+||..++ +.+..+.. ...+.+++|+|+|+ ++++++.|+.|.+|| .+++.+.++..
T Consensus 268 ~~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 268 DQRDEWRHKTASRFVVVLDAKTG-ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EECCTTCTTSCEEEEEEEETTTC-CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CCCCCEEECCCCCEEEEEECCCC-CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 06871265179975999867888-49899668-9987799992899969999978999899999999989999928
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.1e-11 Score=95.61 Aligned_cols=197 Identities=12% Similarity=0.139 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHCHH-HHH--HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 74235788751014-587--899999997317987999988607536668850578245666999999988605912233
Q 000700 457 EQLPIVLQVLLSQC-HRF--RALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQV 533 (1344)
Q Consensus 457 ~~lP~vLq~Lls~~-~rl--ral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~ 533 (1344)
|.+|.++++|.+.. .++ .|...|+.+....+..+...+..|+.|.++++|+++..+.+..++.+++.|+..++.++.
T Consensus 56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999999874699889999999999998639855104766446315666403568799999999999988500168999
Q ss_pred HHHHCCCCHHHHHHCCCCCCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 555337801243311688883---67788999999999518921227888445699999953179999999988899999
Q 000700 534 DLVKDGGHAYFIRFLDSMEAY---PEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWL 610 (1344)
Q Consensus 534 ~l~k~~~~~yf~~~L~~~~~~---~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~ 610 (1344)
.+...+++..++..|...... .....-++++++.++.+....+......+++..+..++. +++++++..+
T Consensus 136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~-------~~~~~~~~~a 208 (434)
T d1q1sc_ 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------HNDPEVLADS 208 (434)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT-------CSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-------CCCCCHHHHH
T ss_conf 999863005899998722321001899999999998886426422114436569999999985-------2442012567
Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999741145488884002580466742106999778999999996400
Q 000700 611 CLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 611 ~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+.+|+.+....++........++...+..++.++.++++.+++.+|+.+.
T Consensus 209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~ 258 (434)
T d1q1sc_ 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV 258 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHCHHHHHHHHH
T ss_conf 76640220123456777763154201000023430655402122135677
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=6.9e-12 Score=96.91 Aligned_cols=264 Identities=15% Similarity=0.189 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCC-------CCHHHHHHHHHCH---HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Q ss_conf 9006986743697722798888999-------7423578875101---45878999999973179879999886075366
Q 000700 432 SPFFSEQLTAFEVWLDHGSEHKKPP-------EQLPIVLQVLLSQ---CHRFRALVLLGRFLDMGPWAVDLALSVGIFPY 501 (1344)
Q Consensus 432 ~~ff~~qLtafe~~L~~g~~~~~~p-------~~lP~vLq~Lls~---~~rlral~ll~~fld~~~wAv~lal~~gifpy 501 (1344)
+.-.+.|+.+...+-+.-+....+| |.+|.++++|.+. .-+..|+.+|+......+.-+.....-|+.|+
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~ 166 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 166 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
T ss_conf 99999999999999999740788439999987984999998717999999999999999997498887799996787478
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 68850578245666999999988605912233555337801243311688883677889999999995189212278884
Q 000700 502 VLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIE 581 (1344)
Q Consensus 502 vlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~ 581 (1344)
++.+|+++..+.+..++..++.|...++.++..++..++...++..+..... ..+.-++.+|+.++.+..........
T Consensus 167 l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--~~~~~~~~~l~nl~~~~~~~~~~~~~ 244 (503)
T d1wa5b_ 167 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--SLIRTATWTLSNLCRGKKPQPDWSVV 244 (503)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--HHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCH--HHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9998559971589999999999854118999988741355630120456888--99999999999984687420479999
Q ss_pred HCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 45699999953179999999988899999999997411454888840025804667421069997789999999964003
Q 000700 582 AGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
.++...+..++. ..+++++..+|.+|+.+....++.....++.++...+..++.+++++|+..++.+|+.+..
T Consensus 245 ~~~l~~l~~~l~-------~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 245 SQALPTLAKLIY-------SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp GGGHHHHHHHTT-------CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998723-------5638999999999875322771111001122331110110257863644567777777877
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 476777899889988773899999999999997630589952399999999999961
Q 000700 662 IGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~ 718 (1344)
.. +.......+..+...+..+..+..+.||++++++++.+...
T Consensus 318 ~~--------------~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~ 360 (503)
T d1wa5b_ 318 GN--------------DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 360 (503)
T ss_dssp SC--------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HH--------------HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 88--------------88787631234099999996399788899998778888614
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=3.8e-13 Score=105.95 Aligned_cols=187 Identities=17% Similarity=0.129 Sum_probs=168.5
Q ss_pred HHCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
Q ss_conf 51014587899999997317987999988607536668-85057824566699999998860591223355533780124
Q 000700 466 LLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVL-KLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYF 544 (1344)
Q Consensus 466 Lls~~~rlral~ll~~fld~~~wAv~lal~~gifpyvl-klL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf 544 (1344)
-.++..+..|+..|..+++-..+|+.+. +.|+++.++ .+|.++..+.|..++.+++.++...+.+|..+++.+++..+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHH-HCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7999999999999999976978899999-869999999998379999999999999999998888888999972763799
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 33116888836778899999999951892122788844569999995317999999998889999999999741145488
Q 000700 545 IRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEA 624 (1344)
Q Consensus 545 ~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~ 624 (1344)
++.|++... ++.|.-+++.|+.++.+++.++......+.+..+..+|. ++++.++.+++.+|+.|+...++.
T Consensus 107 v~lL~~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~-------~~~~~~~~~a~~~L~~l~~~~~~~ 178 (264)
T d1xqra1 107 LRLLDRDAC-DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-------QQVQKLKVKSAFLLQNLLVGHPEH 178 (264)
T ss_dssp HHHHHHCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-------SSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999604998-999999999999874244026789987201268899880-------586578899999999987445778
Q ss_pred HHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8840025804667421069997789999999964003
Q 000700 625 QTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 625 ~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
+....+.++...+..++.+++++||..++.+|+.+..
T Consensus 179 ~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~ 215 (264)
T d1xqra1 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215 (264)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888876468999999739998999999999999986
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=1e-10 Score=88.59 Aligned_cols=245 Identities=9% Similarity=0.048 Sum_probs=105.3
Q ss_pred EEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEEECCCCC----CCCEEEEEEEEECCCCEEEEEE-CCC
Q ss_conf 999947999999997----------8994999987999378884079999----9984899998608998999997-898
Q 000700 1036 TALLQPFSPIVVAAD----------ENERIKIWNYEEDTLLNSFDNHDFP----DKGISKLCLVNELDVSLLLVAS-CNG 1100 (1344)
Q Consensus 1036 si~fspdg~~Latgs----------~dg~I~IWd~~tg~~i~~l~~h~~~----~~~ItsL~f~ns~d~~~Litgs-~DG 1100 (1344)
.+.|+||+..+++++ .++.|.+||..+++.+..+..+... +.....+.| ++|+++++++. .++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~--SpDGk~l~va~~~~~ 146 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN--CASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE--CTTSSCEEEEECSSS
T ss_pred CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEE--CCCCCEEEEEECCCC
T ss_conf 513989998899975567640103567869999899993830643785421024688640588--789989999968998
Q ss_pred EEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC-----CCC
Q ss_conf 099983557788505986010235789972235037999359996999988981999987789624665349-----999
Q 000700 1101 NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS-----SSD 1175 (1344)
Q Consensus 1101 ~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~-----~~~ 1175 (1344)
.+.+||..+ ++.... +..+.... +. ......+++.+.||.+.+++..... ....... ...
T Consensus 147 ~v~~~d~~~--~~~~~~-----~~~~~~~~------~~-~~~~~~~v~~~~Dg~~~~~~~~~~~-~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 147 AAAGLSVPG--ASDDQL-----TKSASCFH------IH-PGAAATHYLGSCPASLAASDLAAAP-AAAGIVGAQCTGAQN 211 (368)
T ss_dssp CEEEEEETT--TEEEEE-----EECSSCCC------CE-EEETTEEECCCCTTSCEEEECCSSC-CCCEECCCCSCTTSC
T ss_pred EEEEEECCC--CCEEEE-----EECCCCCE------EC-CCCCCEEEEECCCCCEEEEEECCCC-EEEEEEECCCCCCCC
T ss_conf 599998998--938678-----60467523------74-6998239999489988999826896-266653031113566
Q ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC----------CCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 982699987599989999977990999987899702684257887----------8778599999208999999999789
Q 000700 1176 CSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQ----------QVERVVGISFQPGLDPAKIVSASQA 1245 (1344)
Q Consensus 1176 ~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~----------h~~~I~sI~~sp~~~g~~Lvsgs~D 1245 (1344)
..+... ...+++..+.. .++.+.+++.......... .... .......++++++ +..++....+
T Consensus 212 ~~~~~~-~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~a~~~~--~~~~~v~~~~ 284 (368)
T d1mdah_ 212 CSSQAA-QANYPGMLVWA--VASSILQGDIPAAGATMKA--AIDGNESGRKADNFRSAGFQMVAKLKN--TDGIMILTVE 284 (368)
T ss_dssp BCSCCE-EETTTTEEEEC--BSSCCEEEECCSSCCEEEC--CCCSSCTHHHHTTEEECSSSCEEEETT--TTEEEEEEEE
T ss_pred CCEEEC-CCCCCCEEEEE--CCCCEEEEEECCCCEEEEE--ECCCCCCEEEEEEECCCCCEEEEECCC--CCEEEEEECC
T ss_conf 646601-01558689993--4897799960699369976--024654304554012788356887179--9879998358
Q ss_pred ---------CCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf ---------92999977888631599905799869999907999--899996799099996-79926899834
Q 000700 1246 ---------GDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP--IIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1246 ---------G~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~--~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
..|.+||..++ +.+..+.. ...+.+++|+|+++ +++++..++.|.+|| .+++.+.++..
T Consensus 285 ~~~~~~~~~~~v~v~D~~t~-~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 285 HSRSCLAAAENTSSVTASVG-QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC-CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCEEECCCCEEEEEECCCC-CEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 97334058864999989999-48689558-9965179999899989999948999699998999979999879
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.36 E-value=3.8e-09 Score=77.40 Aligned_cols=284 Identities=8% Similarity=0.035 Sum_probs=145.1
Q ss_pred CCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCC
Q ss_conf 8998179999479999999978---------9949999879993788840799999984899998608998999997898
Q 000700 1030 FEKGTKTALLQPFSPIVVAADE---------NERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNG 1100 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~---------dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG 1100 (1344)
+...|.++.|+||+++|+.++. ++.+.+||+++++ +..+..+. ..+..+.| +|||..++... ++
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~---~~~~~~~~--SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP---NNTQWVTW--SPVGHKLAYVW-NN 132 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC---TTEEEEEE--CSSTTCEEEEE-TT
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCC---CCCCCCCC--CCCCCEEEEEE-CC
T ss_conf 16765405998988979999777100010467349999898885-13124687---42310101--46764135751-46
Q ss_pred EEEEEECCCCCCCEEEEEEEEC----CCC---------CCCCCCCCCEEEEEECCCCEEEEEEC-CCEEEEEECC---CC
Q ss_conf 0999835577885059860102----357---------89972235037999359996999988-9819999877---89
Q 000700 1101 NIRIWKDYDQKDKQKLVTAFSS----IQG---------HKPGVRCSNVVVDWQQQSGYLYASGE-VSSIMLWDLE---KE 1163 (1344)
Q Consensus 1101 ~IrIWdi~~~~~~~~lv~~~~~----l~~---------h~~~V~s~~~~v~ws~~~~~Llaag~-Dg~I~IWDl~---s~ 1163 (1344)
.+.+|+... +.......... +.+ ....... +.|+|++..++.... +..+..|++. ..
T Consensus 133 ~l~~~~~~~--g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~----~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~ 206 (470)
T d2bgra1 133 DIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA----LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (470)
T ss_dssp EEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC----EEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred CCEEEECCC--CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC----CEECCCCCCCCEEEECCCCCCEEEEEEECCC
T ss_conf 413798899--9465321014777405354320112100477653----0799998722026863776706998766047
Q ss_pred C---EEEEEEC-------------------C-------------------CCCCCEEEEEEECCCCCEEEEE-ECCC---
Q ss_conf 6---2466534-------------------9-------------------9999826999875999899999-7799---
Q 000700 1164 Q---QMVNPIP-------------------S-------------------SSDCSISALTASQVHGGQLAAG-FVDG--- 1198 (1344)
Q Consensus 1164 ~---~~v~~i~-------------------~-------------------~~~~~Vtsl~~~s~dg~~LvsG-s~DG--- 1198 (1344)
. .....+. . ..+..+..+ .+.+++..++.. ...+
T Consensus 207 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~r~~~~~ 285 (470)
T d2bgra1 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV-TWATQERISLQWLRRIQNYS 285 (470)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEE-EEEETTEEEEEEEESSTTEE
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEE-EECCCCCEEEEEEECCCCCE
T ss_conf 77887135403665454688625799998886145520332247863347898667788-87687833478730468815
Q ss_pred EEEEE--ECCCCCEEEEEEC------CC----CCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECC
Q ss_conf 09999--8789970268425------78----878778599999208999999999789929999778886315999057
Q 000700 1199 SVRLY--DVRTPDMLVCSTR------PH----TQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAH 1266 (1344)
Q Consensus 1199 sIrIw--Dlr~~~~~v~~~~------~~----~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h 1266 (1344)
.+.++ |..++. ...... .. ..+... ...+.++.++..+.....+|..++|.....+.....+..+
T Consensus 286 ~~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g 362 (470)
T d2bgra1 286 VMDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG 362 (470)
T ss_dssp EEEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCS
T ss_pred EEEEEEECCCCCC-EEEEEEEEEEEEECCCEEECCCCC--CCEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCC
T ss_conf 9999996188894-789998751466214335313577--7245423788479874367576459995268730451169
Q ss_pred CCCEEEEEECCCCC-EEEEEECCC----EEEEEE--CCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 99869999907999-899996799----099996--799-2689983457864445678738999936997899998
Q 000700 1267 RGSLSALAVHRHAP-IIASGSAKQ----LIKVFS--LEG-EQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGS 1335 (1344)
Q Consensus 1267 ~~~ItsLa~sp~g~-~LasgS~Dg----~I~Iwd--~~g-~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs 1335 (1344)
...+..+ ++.++. ++++++.++ .-.||. +.+ .....+.. . ...+...+.+++|||+|++++...
T Consensus 363 ~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~-~---~~~~~~~~~s~~fSpdgky~~~~~ 434 (470)
T d2bgra1 363 TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC-E---LNPERCQYYSVSFSKEAKYYQLRC 434 (470)
T ss_dssp SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST-T---TSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECC-C---CCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 8048787-8977999999995689983517999998889986057035-4---358889879999998999999983
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.5e-09 Score=80.23 Aligned_cols=242 Identities=18% Similarity=0.227 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHCHHHH--HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHH-----HHHHHHHHHHHHCCCH
Q ss_conf 7423578875101458--78999999973179879999886075366688505782456-----6699999998860591
Q 000700 457 EQLPIVLQVLLSQCHR--FRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPEL-----RQILVFIWTKILALDK 529 (1344)
Q Consensus 457 ~~lP~vLq~Lls~~~r--lral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~el-----r~~~~FIwa~il~~~~ 529 (1344)
+.+|.++++|.++... ..|+..|++...-++-.+......|++++++++|.....+. ...+++.++.++....
T Consensus 99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 178 (434)
T d1q1sc_ 99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178 (434)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 63156664035687999999999999885001689999998630058999987223210018999999999988864264
Q ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 22335553378012433116888836778899999999951892122788844569999995317999999998889999
Q 000700 530 SCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQW 609 (1344)
Q Consensus 530 ~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w 609 (1344)
..+......++...+...+...+ ++.+..++.+|+.+..+...........+++..+..++. +++++++..
T Consensus 179 ~~~~~~~~~~~l~~l~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~-------~~~~~~~~~ 249 (434)
T d1q1sc_ 179 PAPPLDAVEQILPTLVRLLHHND--PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-------ATELPIVTP 249 (434)
T ss_dssp TCCCHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT-------CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCCCCCC-------CCHHHHHHC
T ss_conf 22114436569999999985244--201256776640220123456777763154201000023-------430655402
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999974114548888400258046674210699977899999999640034767778998899887738999999999
Q 000700 610 LCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISI 689 (1344)
Q Consensus 610 ~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 689 (1344)
++-+|+.+..+.++.+...++.++...+..+++++.++||..++.+|+.+.... ......-.+..+
T Consensus 250 al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--------------~~~~~~i~~~~~ 315 (434)
T d1q1sc_ 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--------------QDQIQQVVNHGL 315 (434)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCC--------------CHHHHHHHHHHH
T ss_conf 122135677666677899985256405777613641466688887886520045--------------045777766546
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99997630589952399999999999961160
Q 000700 690 IRSLLTVVSDGSPLVRAEVAVALARFAFGHKQ 721 (1344)
Q Consensus 690 ~~~ll~~~~D~sp~VR~e~~~~l~~~~~~~~~ 721 (1344)
...++.+..++++.||.+++.++..+......
T Consensus 316 i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~ 347 (434)
T d1q1sc_ 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 347 (434)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 89999877515868899999999999834999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=1.6e-09 Score=80.15 Aligned_cols=277 Identities=11% Similarity=-0.075 Sum_probs=171.8
Q ss_pred CCEEEEEECCCCCEEEE---EECCC--CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE---------
Q ss_conf 98179999479999999---97899--49999879993788840799999984899998608998999997---------
Q 000700 1032 KGTKTALLQPFSPIVVA---ADENE--RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS--------- 1097 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Lat---gs~dg--~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs--------- 1097 (1344)
.....++..+++..... +..++ .+.+||..+++.+..+..+. .. .+.| ++|+..+++.+
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~--spDg~~i~~~~~~~~~~~~g 92 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVA--GHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEE--CTTSSCEEEEEEEETTTTSS
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCC---CC--CCEE--CCCCCEEEEECCCCCCCCCC
T ss_conf 98666455898761269720457886217997089983778885787---77--5139--89998899975567640103
Q ss_pred -CCCEEEEEECCCCCCCEEEEEEEECCCC-----CCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEE
Q ss_conf -8980999835577885059860102357-----8997223503799935999699998-89819999877896246653
Q 000700 1098 -CNGNIRIWKDYDQKDKQKLVTAFSSIQG-----HKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPI 1170 (1344)
Q Consensus 1098 -~DG~IrIWdi~~~~~~~~lv~~~~~l~~-----h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i 1170 (1344)
.|+.|++||..+ ++.... .. +.. ....... +.|++++++++++. .++.+.+||+.+.+ .+..+
T Consensus 93 ~~d~~v~v~D~~t--~~~~~~--i~-~p~~~~~~~g~~p~~----~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~ 162 (368)
T d1mdah_ 93 KRTDYVEVFDPVT--FLPIAD--IE-LPDAPRFSVGPRVHI----IGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLT 162 (368)
T ss_dssp SEEEEEEEECTTT--CCEEEE--EE-ETTSCSCCBSCCTTS----EEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEE
T ss_pred CCCCEEEEEECCC--CCEEEE--EC-CCCCCEECCCCCCCC----EEECCCCCEEEEEECCCCEEEEEECCCCC-EEEEE
T ss_conf 5678699998999--938306--43-785421024688640----58878998999996899859999899893-86786
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCE
Q ss_conf 499999826999875999899999779909999878997026842--578878778599999208999999999789929
Q 000700 1171 PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST--RPHTQQVERVVGISFQPGLDPAKIVSASQAGDI 1248 (1344)
Q Consensus 1171 ~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~--~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I 1248 (1344)
..+....+. +.....++..+.||.+.+++........... .....+...+..+.+.++ +..+.+ .++.+
T Consensus 163 ~~~~~~~~~-----~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~v 233 (368)
T d1mdah_ 163 KSASCFHIH-----PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP--GMLVWA--VASSI 233 (368)
T ss_dssp ECSSCCCCE-----EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT--TEEEEC--BSSCC
T ss_pred ECCCCCEEC-----CCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCC--CEEEEE--CCCCE
T ss_conf 046752374-----699823999948998899982689626665303111356664660101558--689993--48977
Q ss_pred EEEECCCCCCCEEEEE--CC----------CCCEEEEEECCCCCEEEEEECC---------CEEEEEE-CCCCEEEEEEC
Q ss_conf 9997788863159990--57----------9986999990799989999679---------9099996-79926899834
Q 000700 1249 QFLDIRNHKDAYLTID--AH----------RGSLSALAVHRHAPIIASGSAK---------QLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1249 ~IWDl~~~~~~i~~l~--~h----------~~~ItsLa~sp~g~~LasgS~D---------g~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.+++.... ....... .+ ......+++++++..++....+ ..|.+|| .+++.+..+..
T Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~ 312 (368)
T d1mdah_ 234 LQGDIPAA-GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp EEEECCSS-CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCC-CEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 99960699-36997602465430455401278835688717998799983589733405886499998999948689558
Q ss_pred CCCCCCCCCCCCEEEEEEECCCC-E-EEEEECCCEEEECC
Q ss_conf 57864445678738999936997-8-99998898099919
Q 000700 1307 HHPSFMAQKIGSVNCLTFHPYQV-L-LAAGSADACVSIHS 1344 (1344)
Q Consensus 1307 ~h~~f~~~~~~~V~slafspdg~-~-Lasgs~Dg~I~IWd 1344 (1344)
...+.+++|+||++ + ++++..|+.|++||
T Consensus 313 ---------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 313 ---------GHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ---------EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ---------CCCEEEEEECCCCCEEEEEEECCCCEEEEEE
T ss_conf ---------9965179999899989999948999699998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.20 E-value=9.9e-10 Score=81.55 Aligned_cols=282 Identities=6% Similarity=-0.096 Sum_probs=156.3
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCC--EEEEEECCC
Q ss_conf 111267899817999947999999997-89949999879993788840799999984899998608998--999997898
Q 000700 1024 ACWDTRFEKGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVS--LLLVASCNG 1100 (1344)
Q Consensus 1024 ~~Wd~~~~~~I~si~fspdg~~Latgs-~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~--~Litgs~DG 1100 (1344)
..|...|.-......++|||++|.+.+ .++.|.++|+++++....+.... +..+..+.| +++++ +++..+.+.
T Consensus 64 ~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~--spdg~t~YV~~~~~~~ 139 (441)
T d1qnia2 64 YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN--VQAIHGLRL--QKVPKTNYVFCNAEFV 139 (441)
T ss_dssp CSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT--CCCEEEEEE--CCSSBCCEEEEEECSC
T ss_pred CCCCCCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCCEEE--ECCCCEEEEEECCCCC
T ss_conf 256755677722103268888899973899979999887784755795678--878643487--0569989999566775
Q ss_pred E-----------------EEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCC-EEEEEECCC
Q ss_conf 0-----------------9998355778850598601023578997223503799935999699998898-199998778
Q 000700 1101 N-----------------IRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVS-SIMLWDLEK 1162 (1344)
Q Consensus 1101 ~-----------------IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg-~I~IWDl~s 1162 (1344)
. +..+|..+ .+.. ++... ...... +.++++++++++++.+. .+..++..+
T Consensus 140 v~~~~dg~~~~~~~~~~~~~~iD~~t----~~v~--~qI~v--~~~p~~----v~~spdGk~a~vt~~nse~~~~id~~t 207 (441)
T d1qnia2 140 IPQPNDGTDFSLDNSYTMFTAIDAET----MDVA--WQVIV--DGNLDN----TDADYTGKYATSTCYNSERAVDLAGTM 207 (441)
T ss_dssp EESSCSSSCCCGGGEEEEEEEEETTT----CSEE--EEEEE--SSCCCC----EEECSSSSEEEEEESCTTCCSSHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCC----CEEE--EEEEC--CCCCCC----EEECCCCCEEEEEECCCCCEEEEECCC
T ss_conf 44367663001455532388663755----6064--78736--998654----698799998999851787318985157
Q ss_pred CCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEE-EE
Q ss_conf 96246653499999826999875999899999779909999878997026842578878778599999208999999-99
Q 000700 1163 EQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKI-VS 1241 (1344)
Q Consensus 1163 ~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~L-vs 1241 (1344)
.. ....+..... -..+ ...++|+++.. +.++.+.+++..... ....+... .....+.++|+ |+++ ++
T Consensus 208 ~~-~~d~i~v~n~--p~~~-~~~~dGk~~~v-~~~~v~vvd~~~~~~-v~~~IPvg----ksPhGv~vSPD--Gkyl~~~ 275 (441)
T d1qnia2 208 RN-DRDWVVVFNV--ERIA-AAVKAGNFKTI-GDSKVPVVDGRGESE-FTRYIPVP----KNPHGLNTSPD--GKYFIAN 275 (441)
T ss_dssp CS-SBCEEEEEEH--HHHH-HHHHTTCCBCC-TTCCCCEEECSSSCS-SEEEECCB----SSCCCEEECTT--SCEEEEE
T ss_pred CC-EEEEEEECCC--CCEE-EEECCCCEEEE-CCCCCEEEECCCCCC-EEEEEECC----CCCCCCEECCC--CCEEEEE
T ss_conf 12-1789996885--1107-99669999996-999828998036870-68997179----88667268999--8789990
Q ss_pred EECCCCEEEEECCCCCC----------CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-----------CCE
Q ss_conf 97899299997788863----------159990579986999990799989999679909999679-----------926
Q 000700 1242 ASQAGDIQFLDIRNHKD----------AYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE-----------GEQ 1300 (1344)
Q Consensus 1242 gs~DG~I~IWDl~~~~~----------~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~-----------g~~ 1300 (1344)
+..+++|.+||+.+..+ .+.-.....-.....+|.++|..+.+...|..|..|++. ...
T Consensus 276 ~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v 355 (441)
T d1qnia2 276 GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYI 355 (441)
T ss_dssp CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCE
T ss_pred CCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEE
T ss_conf 77599389998322445752568842479960145547665226578559985244316897235422133226777656
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 899834578644456787389999369978999988
Q 000700 1301 LGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1301 l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
+..+.. | +..+|...+.+.+++|+|++|++++.
T Consensus 356 ~~~~~v-~--y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 356 RQKLDV-Q--YQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEEC-S--SCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred EECCCC-C--CCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 864532-6--68987752454223898848996574
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=1.4e-07 Score=66.28 Aligned_cols=266 Identities=11% Similarity=0.000 Sum_probs=129.7
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC---------------CCCCEEEEEEEEECCCCEEE
Q ss_conf 899817999947999999997899499998799937888407999---------------99984899998608998999
Q 000700 1030 FEKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDF---------------PDKGISKLCLVNELDVSLLL 1094 (1344)
Q Consensus 1030 ~~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~---------------~~~~ItsL~f~ns~d~~~Li 1094 (1344)
+...+..+.|+|||+.+|... ++.+.+|+..+++.......+.. ..+....+.| +||+..|+
T Consensus 110 ~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia 186 (470)
T d2bgra1 110 IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLA 186 (470)
T ss_dssp CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEE--CCCCCCCC
T ss_conf 874231010146764135751-464137988999465321014777405354320112100477653079--99987220
Q ss_pred EEECCCE-EEEEECC---CC-CCCEEEEE----------------EEECCCCCCCCCC---------------CCCEEEE
Q ss_conf 9978980-9998355---77-88505986----------------0102357899722---------------3503799
Q 000700 1095 VASCNGN-IRIWKDY---DQ-KDKQKLVT----------------AFSSIQGHKPGVR---------------CSNVVVD 1138 (1344)
Q Consensus 1095 tgs~DG~-IrIWdi~---~~-~~~~~lv~----------------~~~~l~~h~~~V~---------------s~~~~v~ 1138 (1344)
....|.. +..|... .. ........ -+..-.+....+. .....+.
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (470)
T d2bgra1 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT 266 (470)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 26863776706998766047778871354036654546886257999988861455203322478633478986677888
Q ss_pred EECCCCEEEEEE-CC---CEEEE--EECCCCCEEEEEEC-----CC-------CCCCEEEEEEECCCCCEEEEEECCCEE
Q ss_conf 935999699998-89---81999--98778962466534-----99-------999826999875999899999779909
Q 000700 1139 WQQQSGYLYASG-EV---SSIML--WDLEKEQQMVNPIP-----SS-------SDCSISALTASQVHGGQLAAGFVDGSV 1200 (1344)
Q Consensus 1139 ws~~~~~Llaag-~D---g~I~I--WDl~s~~~~v~~i~-----~~-------~~~~Vtsl~~~s~dg~~LvsGs~DGsI 1200 (1344)
|.+++..++... .. ..+.+ +|..++. ...... .. ........ ....++..++....||..
T Consensus 267 w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~s~~dg~~ 344 (470)
T d2bgra1 267 WATQERISLQWLRRIQNYSVMDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRPSEPHF-TLDGNSFYKIISNEEGYR 344 (470)
T ss_dssp EEETTEEEEEEEESSTTEEEEEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSCCCCEE-CTTSSEEEEEEECTTSCE
T ss_pred ECCCCCEEEEEEECCCCCEEEEEEEECCCCCC-EEEEEEEEEEEEECCCEEECCCCCCCEE-EECCCCCEEEEECCCCCC
T ss_conf 76878334787304688159999996188894-7899987514662143353135777245-423788479874367576
Q ss_pred EEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCC----CEEEEE--CCCCCCCEEEE----ECCCCCE
Q ss_conf 9998789970268425788787785999992089999999997899----299997--78886315999----0579986
Q 000700 1201 RLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAG----DIQFLD--IRNHKDAYLTI----DAHRGSL 1270 (1344)
Q Consensus 1201 rIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG----~I~IWD--l~~~~~~i~~l----~~h~~~I 1270 (1344)
++|............ . .+...|..+ +..+ +...+++++.++ .-.+|. +... .....+ ..|...+
T Consensus 345 ~ly~~~~~g~~~~~l-t--~g~~~v~~~-~~~d-~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~ 418 (470)
T d2bgra1 345 HICYFQIDKKDCTFI-T--KGTWEVIGI-EALT-SDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNPERCQY 418 (470)
T ss_dssp EEEEEETTCSCCEES-C--CSSSCEEEE-EEEC-SSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTSTTTBCB
T ss_pred EEEEEECCCCCEEEE-C--CCCEEEEEE-EEEC-CCEEEEEEECCCCCCCEEEEEEEECCCC-CCEEEECCCCCCCCCCE
T ss_conf 459995268730451-1--698048787-8977-9999999956899835179999988899-86057035435888987
Q ss_pred EEEEECCCCCEEEE---EECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 99999079998999---96799099996-79926899834
Q 000700 1271 SALAVHRHAPIIAS---GSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1271 tsLa~sp~g~~Las---gS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.+++|+|+|++++. |...-.+.+|+ .+++.+..+..
T Consensus 419 ~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 419 YSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp EEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 9999998999999983289998199999899989999806
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=9.9e-09 Score=74.41 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=153.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 66688505782456669999999886059122335553378012433-11688883677889999999995189212278
Q 000700 500 PYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIR-FLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 578 (1344)
Q Consensus 500 pyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~-~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 578 (1344)
|-.....++...|.|.-+.=.++.++.. .....++.+-||+...+. .|..++ ++.|.-++.+|+.++.+.+..|..
T Consensus 20 ~~~~~~~~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~--~~vr~~A~~~L~~l~~~~~~~~~~ 96 (264)
T d1xqra1 20 PTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA--AGLRWRAAQLIGTCSQNVAAIQEQ 96 (264)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3177765079999999999999999769-7889999986999999999837999--999999999999999888888899
Q ss_pred HHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 88445699999953179999999988899999999997411454888840025804667421069997789999999964
Q 000700 579 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 658 (1344)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~ 658 (1344)
....+++..++.+|.. ++++++|.-++.+|+.+..+++..+...+..+....+..++.++++.|+..++.+|++
T Consensus 97 ~~~~~~i~~Lv~lL~~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~ 170 (264)
T d1xqra1 97 VLGLGALRKLLRLLDR------DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 170 (264)
T ss_dssp HHHTTHHHHHHHHHHH------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9972763799999604------9989999999999998742440267899872012688998805865788999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 00347677789988998877389999999999999763058995239999999999996116
Q 000700 659 LLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFGHK 720 (1344)
Q Consensus 659 ~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~~~ 720 (1344)
+.... .+......+.+....++.++.++++.||..++.++..+.....
T Consensus 171 l~~~~--------------~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~ 218 (264)
T d1xqra1 171 LLVGH--------------PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 218 (264)
T ss_dssp HHHHC--------------GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHCC--------------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 87445--------------7788888876468999999739998999999999999986488
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.9e-08 Score=69.46 Aligned_cols=235 Identities=12% Similarity=0.128 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHCHH---HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 974235788751014---58789999999731798799998860753666885057824566699999998860591223
Q 000700 456 PEQLPIVLQVLLSQC---HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQ 532 (1344)
Q Consensus 456 p~~lP~vLq~Lls~~---~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q 532 (1344)
++..|.++++|..+. -+..|...|..+ -.++..+...+..|+.|-++++|.++..+.+..++..+..++...+.++
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l-~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 339999999984799999999999999999-5891669999987989999998579798999999999998651320113
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 35553378012433116888836778899999999951892122788844569999995317999999998889999999
Q 000700 533 VDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCL 612 (1344)
Q Consensus 533 ~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l 612 (1344)
......|++..++..|+..+ ++.+..++-+|..++.+....+......+.+..+...+.. .+.+.++..++-
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~~~~~~~~~ 208 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT------YTYEKLLWTTSR 208 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHH
T ss_conf 67876588148999887057--6888888999988763004788888760563689999986------104899999999
Q ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99974114548888400258046674210699977899999999640034767778998899887738999999999999
Q 000700 613 CLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 692 (1344)
Q Consensus 613 ~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 692 (1344)
++..+..+ ++.+...++.++...+..++.++++.++..++.+|..+-.... .. .. .......
T Consensus 209 ~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~----------~~-~~------~~~~i~~ 270 (529)
T d1jdha_ 209 VLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT----------KQ-EG------MEGLLGT 270 (529)
T ss_dssp HHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT----------TC-SC------CHHHHHH
T ss_pred HHHHHHCC-CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC----------CH-HH------HHHCCHH
T ss_conf 87511013-3233045654333469998625401555301567775043211----------02-56------6401014
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9763058995239999999999996
Q 000700 693 LLTVVSDGSPLVRAEVAVALARFAF 717 (1344)
Q Consensus 693 ll~~~~D~sp~VR~e~~~~l~~~~~ 717 (1344)
++.+..+.++.|+..++.++..+..
T Consensus 271 Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 271 LVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 4541245428899999998875012
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.07 E-value=3.6e-08 Score=70.43 Aligned_cols=255 Identities=10% Similarity=0.039 Sum_probs=155.1
Q ss_pred CCCCCCCEEEEEECCCCC--EEEEEECCC-----------------CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 267899817999947999--999997899-----------------4999987999378884079999998489999860
Q 000700 1027 DTRFEKGTKTALLQPFSP--IVVAADENE-----------------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNE 1087 (1344)
Q Consensus 1027 d~~~~~~I~si~fspdg~--~Latgs~dg-----------------~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns 1087 (1344)
...+..++..+.|+|+++ +++..+++. .+..+|..+.+....+.... ....+.+ +
T Consensus 111 ~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~----~p~~v~~--s 184 (441)
T d1qnia2 111 HIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG----NLDNTDA--D 184 (441)
T ss_dssp ECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS----CCCCEEE--C
T ss_pred ECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCC----CCCCEEE--C
T ss_conf 567887864348705699899995667754436766300145553238866375560647873699----8654698--7
Q ss_pred CCCCEEEEEECCC-EEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 8998999997898-099983557788505986010235789972235037999359996999988981999987789624
Q 000700 1088 LDVSLLLVASCNG-NIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQM 1166 (1344)
Q Consensus 1088 ~d~~~Litgs~DG-~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~ 1166 (1344)
++++++++.+.+. .+..++..+. .....+.. .. .-.. ..+.++++++.+ +.++.+.+++..... .
T Consensus 185 pdGk~a~vt~~nse~~~~id~~t~-~~~d~i~v---~n----~p~~----~~~~~dGk~~~v-~~~~v~vvd~~~~~~-v 250 (441)
T d1qnia2 185 YTGKYATSTCYNSERAVDLAGTMR-NDRDWVVV---FN----VERI----AAAVKAGNFKTI-GDSKVPVVDGRGESE-F 250 (441)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTC-SSBCEEEE---EE----HHHH----HHHHHTTCCBCC-TTCCCCEEECSSSCS-S
T ss_pred CCCCEEEEEECCCCCEEEEECCCC-CEEEEEEE---CC----CCCE----EEEECCCCEEEE-CCCCCEEEECCCCCC-E
T ss_conf 999989998517873189851571-21789996---88----5110----799669999996-999828998036870-6
Q ss_pred EEEECCCCCCCEEEEEEECCCCCEE-EEEECCCEEEEEECCCCCEEE-------EEECCCCCCCCCEEEEEEECCCCCCE
Q ss_conf 6653499999826999875999899-999779909999878997026-------84257887877859999920899999
Q 000700 1167 VNPIPSSSDCSISALTASQVHGGQL-AAGFVDGSVRLYDVRTPDMLV-------CSTRPHTQQVERVVGISFQPGLDPAK 1238 (1344)
Q Consensus 1167 v~~i~~~~~~~Vtsl~~~s~dg~~L-vsGs~DGsIrIwDlr~~~~~v-------~~~~~~~~h~~~I~sI~~sp~~~g~~ 1238 (1344)
+..++.+.. ...+ ..+++|+++ ++|..+++|.+||+.+..... ..........-......|.++ +..
T Consensus 251 ~~~IPvgks--PhGv-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~--g~~ 325 (441)
T d1qnia2 251 TRYIPVPKN--PHGL-NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR--GNA 325 (441)
T ss_dssp EEEECCBSS--CCCE-EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS--SEE
T ss_pred EEEEECCCC--CCCC-EECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCC--CEE
T ss_conf 899717988--6672-68999878999077599389998322445752568842479960145547665226578--559
Q ss_pred EEEEECCCCEEEEECCCC---------CCCEEEEE-----CCCCCEEEEEECCCCCEEEEE---ECCC----------EE
Q ss_conf 999978992999977888---------63159990-----579986999990799989999---6799----------09
Q 000700 1239 IVSASQAGDIQFLDIRNH---------KDAYLTID-----AHRGSLSALAVHRHAPIIASG---SAKQ----------LI 1291 (1344)
Q Consensus 1239 Lvsgs~DG~I~IWDl~~~---------~~~i~~l~-----~h~~~ItsLa~sp~g~~Lasg---S~Dg----------~I 1291 (1344)
+.+...|..|..|++... ...+..+. +|...+.+.+++|+|++|+++ +.|+ .-
T Consensus 326 yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~ 405 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPEND 405 (441)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEE
T ss_pred EECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 98524431689723542213322677765686453266898775245422389884899657444255767888987644
Q ss_pred EEEECCCCEEEEEEC
Q ss_conf 999679926899834
Q 000700 1292 KVFSLEGEQLGTIRY 1306 (1344)
Q Consensus 1292 ~Iwd~~g~~l~~l~~ 1306 (1344)
.+.|++|+.+..+..
T Consensus 406 q~~~i~~~~~~~~~~ 420 (441)
T d1qnia2 406 QLIDISGEEMKLVHD 420 (441)
T ss_dssp EEEECSSSSCEEEEE
T ss_pred EEEEECCCEEEEEEC
T ss_conf 269815975799843
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.2e-07 Score=66.57 Aligned_cols=237 Identities=15% Similarity=0.108 Sum_probs=172.1
Q ss_pred CCHHHHHHHHHCH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 7423578875101--4587899999997317987999988607536668850578-245666999999988605912233
Q 000700 457 EQLPIVLQVLLSQ--CHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTT-TPELRQILVFIWTKILALDKSCQV 533 (1344)
Q Consensus 457 ~~lP~vLq~Lls~--~~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~-~~elr~~~~FIwa~il~~~~~~q~ 533 (1344)
.-.|-+.++|.+. .-+.+|...|+++....+.........|+.+.++++|+.+ ..+.+..++-++..+.. +..++.
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~ 95 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLL 95 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCHHHH
T ss_conf 7999999987299999999999999999845577899987133999999998479999999999999999958-916699
Q ss_pred HHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 55533780124331168888367788999999999518921227888445699999953179999999988899999999
Q 000700 534 DLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLC 613 (1344)
Q Consensus 534 ~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~ 613 (1344)
..++.++....+..|.+++ +..+..++-.|+.++.+.+..|......+++..+..+|+ +++++++..++.+
T Consensus 96 ~i~~~g~i~~Li~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-------~~~~~~~~~a~~~ 166 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDC 166 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-------CCCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH-------CCCHHHHHHHHHH
T ss_conf 9998798999999857979--899999999999865132011367876588148999887-------0576888888999
Q ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99741145488884002580466742106-99977899999999640034767778998899887738999999999999
Q 000700 614 LGKLWEDFTEAQTIGRRADAPAIYVPLLS-EPQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRS 692 (1344)
Q Consensus 614 Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~-D~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 692 (1344)
|+.+..+.++.+....+.++...+..++. ...+.++..++-++..+... ++....-.+......
T Consensus 167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~---------------~~~~~~~~~~g~~~~ 231 (529)
T d1jdha_ 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC---------------SSNKPAIVEAGGMQA 231 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---------------TTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHH
T ss_conf 98876300478888876056368999998610489999999987511013---------------323304565433346
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 97630589952399999999999961
Q 000700 693 LLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 693 ll~~~~D~sp~VR~e~~~~l~~~~~~ 718 (1344)
+..+..++++.++..++..+..+...
T Consensus 232 L~~ll~~~~~~~~~~a~~~l~~ls~~ 257 (529)
T d1jdha_ 232 LGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99986254015553015677750432
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=1.4e-06 Score=59.04 Aligned_cols=238 Identities=11% Similarity=0.162 Sum_probs=95.7
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCC---CCEEEEEEEEECCC-CEEEEE-ECCCEEEEEEC
Q ss_conf 81799994799999999789949999879993788840799999---98489999860899-899999-78980999835
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPD---KGISKLCLVNELDV-SLLLVA-SCNGNIRIWKD 1107 (1344)
Q Consensus 1033 ~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~---~~ItsL~f~ns~d~-~~Litg-s~DG~IrIWdi 1107 (1344)
.+..++++++++++++-..+..|++|+.+ ++.+..+....... .....+.+. .+. ..+++. +.++.|..++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV--RNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--TTTTEEEEEECGGGCEEEEECT
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCCCCCC
T ss_conf 90079994999899997998989999699-99999816657886642266300012--3445520000477531000002
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC-CCCCEEEEEEECC
Q ss_conf 577885059860102357899722350379993599969999889819999877896246653499-9998269998759
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS-SDCSISALTASQV 1186 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~-~~~~Vtsl~~~s~ 1186 (1344)
. +.... .+ -......... ++..+++..+++....+.+.+++... + .+..+... .......+ ...+
T Consensus 101 ~---g~~~~--~~--~~~~~~~p~~----~avd~~G~i~v~~~~~~~~~~~~~~g-~-~~~~~g~~~~~~~~~~i-~~d~ 166 (279)
T d1q7fa_ 101 Y---GQFVR--KF--GATILQHPRG----VTVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGV-VVND 166 (279)
T ss_dssp T---SCEEE--EE--CTTTCSCEEE----EEECTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEE-EECS
T ss_pred C---CCCEE--EC--CCCCCCCCCE----ECCCCCCCEEEEEECCCEEEEECCCC-C-EEECCCCCCCCCCCCEE-EECC
T ss_conf 5---63024--03--8886425420----00014784799963263256762687-5-01002200102566243-2012
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCCCEEEEEC
Q ss_conf 9989999977990999987899702684257887877859999920899999999978-992999977888631599905
Q 000700 1187 HGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1187 dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~-DG~I~IWDl~~~~~~i~~l~~ 1265 (1344)
+++++++....+.|++||.... ....+ ...+.......+++.++ ++.+++-.. ++.|.+|+.. + +.+.++..
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~G~--~~~~~-g~~g~~~~P~giavD~~--G~i~Vad~~~~~~v~~f~~~-G-~~~~~~~~ 239 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYEGQ--YLRQI-GGEGITNYPIGVGINSN--GEILIADNHNNFNLTIFTQD-G-QLISALES 239 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETTCC--EEEEE-SCTTTSCSEEEEEECTT--CCEEEEECSSSCEEEEECTT-S-CEEEEEEE
T ss_pred CEEEEEEECCCCCEEEEECCCC--EEEEE-CCCCCCCCCCCCCCCCC--CEEEEEECCCCCEEEEECCC-C-CEEEEEEC
T ss_conf 0017862013551002304794--44530-11321148762323147--86999978998089999999-9-99999968
Q ss_pred C--CCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 7--99869999907999899996799099996
Q 000700 1266 H--RGSLSALAVHRHAPIIASGSAKQLIKVFS 1295 (1344)
Q Consensus 1266 h--~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd 1295 (1344)
. ....+.+++.+++.++++ +.++.|++|.
T Consensus 240 ~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr 270 (279)
T d1q7fa_ 240 KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 270 (279)
T ss_dssp SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCCCEEEEEEECCCCEEEE-ECCCEEEEEE
T ss_conf 888898837999089919999-1899699987
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=2.1e-06 Score=57.77 Aligned_cols=238 Identities=8% Similarity=0.034 Sum_probs=138.5
Q ss_pred CCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEE-EECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECC
Q ss_conf 9981799994799999999-7899499998799937888-4079999998489999860899899999789809998355
Q 000700 1031 EKGTKTALLQPFSPIVVAA-DENERIKIWNYEEDTLLNS-FDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDY 1108 (1344)
Q Consensus 1031 ~~~I~si~fspdg~~Latg-s~dg~I~IWd~~tg~~i~~-l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~ 1108 (1344)
...+..++++++|...++. +..+.+..++......... ..+. .....+++ .+++.+.++....+.+++++..
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~p~gvav--~~~g~i~v~d~~~~~i~~~~~~ 86 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL----YQPQGLAV--DGAGTVYVTDFNNRVVTLAAGS 86 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC----CSCCCEEE--CTTCCEEEEETTTEEEEECTTC
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCC----CCCEEEEE--CCCCCEEEEEEEECEEEEEEEC
T ss_conf 69878899969999999971899889999389966897436986----68408999--3899889863100003554211
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 77885059860102357899722350379993599969999889819999877896246653499999826999875999
Q 000700 1109 DQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1109 ~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg 1188 (1344)
. ...+ .... ......+ +++.+++..+++-..+..+..++..... . ..+.........++ ...+++
T Consensus 87 ~----~~~~---~~~~-~~~~p~~----iavd~~g~i~v~d~~~~~~~~~~~~~~~-~-~~~~~~~~~~p~~i-~~~~~g 151 (260)
T d1rwia_ 87 N----NQTV---LPFD-GLNYPEG----LAVDTQGAVYVADRGNNRVVKLAAGSKT-Q-TVLPFTGLNDPDGV-AVDNSG 151 (260)
T ss_dssp S----CCEE---CCCC-SCCSEEE----EEECTTCCEEEEEGGGTEEEEECTTCSS-C-EECCCCSCCSCCEE-EECTTC
T ss_pred C----CEEE---EEEE-EEEECCC----CCCCCCCEEEEECCCCCCCCCCCCCCCE-E-EEEEECCCCCCCEE-EECCCC
T ss_conf 2----0000---0010-0000000----0245532057503355532112322220-1-22320366775205-454899
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-CCC
Q ss_conf 8999997799099998789970268425788787785999992089999999997899299997788863159990-579
Q 000700 1189 GQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AHR 1267 (1344)
Q Consensus 1189 ~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~-~h~ 1267 (1344)
+++++...++.|..+|........... ........+++.++ ++++++....+.|..++.... ....+. ..-
T Consensus 152 ~~~v~~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~gi~~d~~--g~l~vsd~~~~~i~~~~~~~~--~~~~~~~~~~ 223 (260)
T d1rwia_ 152 NVYVTDTDNNRVVKLEAESNNQVVLPF----TDITAPWGIAVDEA--GTVYVTEHNTNQVVKLLAGST--TSTVLPFTGL 223 (260)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCC----SSCCSEEEEEECTT--CCEEEEETTTTEEEEECTTCS--CCEECCCCSC
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEC----CCCCCCCCCEEEEE--EEEEEEECCCCEEEEEECCCC--EEEEECCCCC
T ss_conf 886410256433222343100122210----11478763123100--013432148998999969997--6999706998
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 986999990799989999679909999679
Q 000700 1268 GSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1268 ~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~ 1297 (1344)
.....+++++++.++++-..++.|+.++..
T Consensus 224 ~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 224 NTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCEEEEEEECCCCEEEEECCCCEEEEEECC
T ss_conf 981799990899999997999989999599
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=2.4e-06 Score=57.38 Aligned_cols=234 Identities=9% Similarity=0.062 Sum_probs=147.1
Q ss_pred CEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEE
Q ss_conf 84899998608998999997-89809998355778850598601023578997223503799935999699998-89819
Q 000700 1078 GISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSI 1155 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~Litgs-~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I 1155 (1344)
.-.++++ .+++.+.++.. ..+.+..++... . .... ....+ ...... +++.+++. ++++. ..+.+
T Consensus 15 ~P~~vav--d~dG~i~v~~~~~~~~i~~~~~~~--~-~~~~---~~~~~-~~~p~g----vav~~~g~-i~v~d~~~~~i 80 (260)
T d1rwia_ 15 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGS--T-GTTV---LPFNG-LYQPQG----LAVDGAGT-VYVTDFNNRVV 80 (260)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEEC-------CEEE---CCCCS-CCSCCC----EEECTTCC-EEEEETTTEEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCCEEEEECCCC--C-EEEE---ECCCC-CCCCEE----EEECCCCC-EEEEEEEECEE
T ss_conf 8788999--699999999718998899993899--6-6897---43698-668408----99938998-89863100003
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99987789624665349999982699987599989999977990999987899702684257887877859999920899
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1156 ~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~ 1235 (1344)
++++..... .+..... .....++ ...++++++++...+..+..++............. ......+++.++
T Consensus 81 ~~~~~~~~~-~~~~~~~--~~~p~~i-avd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~-- 150 (260)
T d1rwia_ 81 TLAAGSNNQ-TVLPFDG--LNYPEGL-AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG----LNDPDGVAVDNS-- 150 (260)
T ss_dssp EECTTCSCC-EECCCCS--CCSEEEE-EECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS----CCSCCEEEECTT--
T ss_pred EEEEECCCE-EEEEEEE--EEECCCC-CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCCCEEEECCC--
T ss_conf 554211200-0000100--0000000-24553205750335553211232222012232036----677520545489--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 99999997899299997788863159990579986999990799989999679909999679926899834578644456
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRYHHPSFMAQK 1315 (1344)
Q Consensus 1236 g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~ 1315 (1344)
++.+++...++.|..+|.... .........-.....+++.+++.++++....+.|..++..+.....+.. . .
T Consensus 151 g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~--~-----~ 222 (260)
T d1rwia_ 151 GNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF--T-----G 222 (260)
T ss_dssp CCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCC--C-----S
T ss_pred CCEEEECCCCCCCCCCCCCCC-EEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECC--C-----C
T ss_conf 988641025643322234310-0122210114787631231000134321489989999699976999706--9-----9
Q ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEC
Q ss_conf 7873899993699789999889809991
Q 000700 1316 IGSVNCLTFHPYQVLLAAGSADACVSIH 1343 (1344)
Q Consensus 1316 ~~~V~slafspdg~~Lasgs~Dg~I~IW 1343 (1344)
.....++++++++.++++-..++.|+..
T Consensus 223 ~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 223 LNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp CCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 8981799990899999997999989999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.88 E-value=3.1e-06 Score=56.60 Aligned_cols=234 Identities=10% Similarity=-0.027 Sum_probs=122.0
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98179999479999999978994999987999378884079999998489999860899899999789809998355778
Q 000700 1032 KGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQK 1111 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~ 1111 (1344)
..+..++++++|.++++...++.|..|+.+ ++. ..+.... ..+.+++| .++++++++...++.+..|+.....
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~---~~~~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVE---GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECS---SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCCCCEEECCCCCEEEEECCCCEEEEEECC-CCE-EEEECCC---CCCCEEEE--CCCCCEEEEECCCCEEEEEEECCCC
T ss_conf 884787799998899996889989999089-988-9997179---98536898--6778869983289537888710111
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECC---------CCCCCEEEEE
Q ss_conf 8505986010235789972235037999359996999988981999987789624665349---------9999826999
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPS---------SSDCSISALT 1182 (1344)
Q Consensus 1112 ~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~---------~~~~~Vtsl~ 1182 (1344)
+....+ .... ....... +.+.+++..+++...++.+..+|..... ....... ........+.
T Consensus 101 ~~~~~~---~~~~-~~~~~n~----i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~ 171 (302)
T d2p4oa1 101 GTVETL---LTLP-DAIFLNG----ITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLK 171 (302)
T ss_dssp SCEEEE---EECT-TCSCEEE----EEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred CCEEEC---CCCC-CCCCCCE----EEECCCCCEEEECCCCCCCEEEECCCCC-CEEEECCCCCCEEECCCCCCCCCCCC
T ss_conf 101210---2357-8632216----6771579787503565541024216873-03675188640143157632243201
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEE
Q ss_conf 87599989999977990999987899702684257887877859999920899999999978992999977888631599
Q 000700 1183 ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLT 1262 (1344)
Q Consensus 1183 ~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~ 1262 (1344)
.. .+.++++.+..+.|..++........ ..... ........+++.++ |+++++...++.|..++.......+..
T Consensus 172 -~~-~~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~~pdgia~d~d--G~l~va~~~~~~V~~i~p~G~~~~~~~ 245 (302)
T d2p4oa1 172 -RF-GNFLYVSNTEKMLLLRIPVDSTDKPG-EPEIF-VEQTNIDDFAFDVE--GNLYGATHIYNSVVRIAPDRSTTIIAQ 245 (302)
T ss_dssp -EE-TTEEEEEETTTTEEEEEEBCTTSCBC-CCEEE-EESCCCSSEEEBTT--CCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred -CC-CCCEEEECCCCCEEEECCCCCCCCCC-CCCCC-CCCCCCCCEEECCC--CCEEEEECCCCCEEEECCCCCEEEEEE
T ss_conf -16-98304403788769863443333234-53101-58998752378799--999999748991899878997899996
Q ss_pred EECCCCCEEEEEE---CCCCCEEEEEEC
Q ss_conf 9057998699999---079998999967
Q 000700 1263 IDAHRGSLSALAV---HRHAPIIASGSA 1287 (1344)
Q Consensus 1263 l~~h~~~ItsLa~---sp~g~~LasgS~ 1287 (1344)
....-...++++| .++++.|..++.
T Consensus 246 ~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 246 AEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCCCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 3789888248997087887898999988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.86 E-value=3.8e-06 Score=56.00 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=156.6
Q ss_pred CCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 93788840799999984899998608998999997898099983557788505986010235789972235037999359
Q 000700 1063 DTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQ 1142 (1344)
Q Consensus 1063 g~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~ 1142 (1344)
.+.+..+... ..+..+++ .+|++++++...++.|..|+.. +.... +........+ ++|.++
T Consensus 18 ~~v~~~~p~~----~~~e~iAv--~pdG~l~vt~~~~~~I~~i~p~---g~~~~------~~~~~~~~~g----la~~~d 78 (302)
T d2p4oa1 18 AKIITSFPVN----TFLENLAS--APDGTIFVTNHEVGEIVSITPD---GNQQI------HATVEGKVSG----LAFTSN 78 (302)
T ss_dssp EEEEEEECTT----CCEEEEEE--CTTSCEEEEETTTTEEEEECTT---CCEEE------EEECSSEEEE----EEECTT
T ss_pred CCEEEECCCC----CCCCCEEE--CCCCCEEEEECCCCEEEEEECC---CCEEE------EECCCCCCCE----EEECCC
T ss_conf 2078888899----88478779--9998899996889989999089---98899------9717998536----898677
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC----
Q ss_conf 9969999889819999877896246653-49999982699987599989999977990999987899702684257----
Q 000700 1143 SGYLYASGEVSSIMLWDLEKEQQMVNPI-PSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRP---- 1217 (1344)
Q Consensus 1143 ~~~Llaag~Dg~I~IWDl~s~~~~v~~i-~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~---- 1217 (1344)
+..+++...++.+..++..........+ ..........+ .+.++++++++.+.++.+..+|...+...+.....
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i-~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI-TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE-EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEE-EECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCE
T ss_conf 8869983289537888710111101210235786322166-771579787503565541024216873036751886401
Q ss_pred --CCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCC--EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf --887877859999920899999999978992999977888631--5999057998699999079998999967990999
Q 000700 1218 --HTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDA--YLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKV 1293 (1344)
Q Consensus 1218 --~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~--i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~I 1293 (1344)
..........+.+.. ...+++.+..+.|..++....... ...+. .......++++++|.++++...++.|..
T Consensus 158 ~~~~~~~~~~ngi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~ 233 (302)
T d2p4oa1 158 SNSESVFPAANGLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVR 233 (302)
T ss_dssp SSTTCCSCSEEEEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred EECCCCCCCCCCCCCCC---CCEEEECCCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCEEECCCCCEEEEECCCCCEEE
T ss_conf 43157632243201169---8304403788769863443333234531015-8998752378799999999748991899
Q ss_pred EECCCCEEEEEECCCCCCCCCCCCCEEEEEE---ECCCCEEEEEECC
Q ss_conf 9679926899834578644456787389999---3699789999889
Q 000700 1294 FSLEGEQLGTIRYHHPSFMAQKIGSVNCLTF---HPYQVLLAAGSAD 1337 (1344)
Q Consensus 1294 wd~~g~~l~~l~~~h~~f~~~~~~~V~slaf---spdg~~Lasgs~D 1337 (1344)
++.+++....... .. .....++++| .+|++.|..++..
T Consensus 234 i~p~G~~~~~~~~-~~-----~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 234 IAPDRSTTIIAQA-EQ-----GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECTTCCEEEEECG-GG-----TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ECCCCCEEEEEEC-CC-----CCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 8789978999963-78-----98882489970878878989999889
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.85 E-value=4e-06 Score=55.83 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=26.7
Q ss_pred EEEECCCCEEEEEE-CCCEEEEEECCCCCEEE--EEEC-CCCCCCEEEEEEECCCCCEEEEEE-CCCEEEEEECCC
Q ss_conf 99935999699998-89819999877896246--6534-999998269998759998999997-799099998789
Q 000700 1137 VDWQQQSGYLYASG-EVSSIMLWDLEKEQQMV--NPIP-SSSDCSISALTASQVHGGQLAAGF-VDGSVRLYDVRT 1207 (1344)
Q Consensus 1137 v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v--~~i~-~~~~~~Vtsl~~~s~dg~~LvsGs-~DGsIrIwDlr~ 1207 (1344)
+.|+|++++++++. ....|.+|+........ .... ...+.....+ .++++++++++.. .++.|.+|+...
T Consensus 150 v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i-~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV-AMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE-EECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEE-EECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 7888999989982079987999970688716652511112788740899-98899866999515899899999559
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.3e-06 Score=59.41 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCHHHCCC
Q ss_conf 99999998412799956551012011110
Q 000700 831 SQCVLAMCTLAKDPSPRIATLGRRVLSII 859 (1344)
Q Consensus 831 ~~~~~~l~~l~~Dp~p~v~~~a~~~~~~i 859 (1344)
..+...+..|..|+.++|+..|+..++.+
T Consensus 557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 557 SEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999975799877999999999987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=7.2e-06 Score=54.02 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=134.9
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECC-CE--EEEEECCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 4999987999378884079999998489999860899899999789-80--99983557788505986010235789972
Q 000700 1054 RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCN-GN--IRIWKDYDQKDKQKLVTAFSSIQGHKPGV 1130 (1344)
Q Consensus 1054 ~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~D-G~--IrIWdi~~~~~~~~lv~~~~~l~~h~~~V 1130 (1344)
.|.|.|.+.... ..+..+. ..+.+.+| +|||+.|+-.... +. +.+.+... +..... ..+....
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~---~~~~sP~w--SPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~ 85 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSP---QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLAN--GAVRQV------ASFPRHN 85 (269)
T ss_dssp EEEEEETTSCSC-EEEEEES---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTT--CCEEEE------ECCSSCE
T ss_pred EEEEECCCCCCC-EEEECCC---CCEEEEEE--CCCCCEEEEEEEECCCCCEEEEECCC--CCEEEE------EEEECCC
T ss_conf 999992899976-7986589---84260388--78999899998152675134431136--750677------6420245
Q ss_pred CCCCEEEEEECCCCEEEEEE-CCCE--EEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCE--EEEEE
Q ss_conf 23503799935999699998-8981--999987789624665349999982699987599989-999977990--99998
Q 000700 1131 RCSNVVVDWQQQSGYLYASG-EVSS--IMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQ-LAAGFVDGS--VRLYD 1204 (1344)
Q Consensus 1131 ~s~~~~v~ws~~~~~Llaag-~Dg~--I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~-LvsGs~DGs--IrIwD 1204 (1344)
.. ..|++++..++... .++. +..+...... .......... .... ....++.. +++...+|. |...+
T Consensus 86 ~~----~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 86 GA----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSN-NTEP-TWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp EE----EEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSC-EEEE-EECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CC----CEECCCCCEEEEEEECCCCCCEEECCCCCCC--CEEEEECCCC-CCCC-CCCCCCCCCEECCCCCCCCEEEEEE
T ss_conf 43----0244889864676402786410000222122--0000101442-1145-4345544330000126874386542
Q ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC-CCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 7899702684257887877859999920899999999978-992999977888631599905799869999907999899
Q 000700 1205 VRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ-AGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIA 1283 (1344)
Q Consensus 1205 lr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~-DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~La 1283 (1344)
..... ..... ..........|+|+ +..++..+. .+...+|........ ..............|+|+|+.|+
T Consensus 158 ~~~~~-~~~~~----~~~~~~~~~~~spd--g~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~p~~SPDG~~i~ 229 (269)
T d2hqsa1 158 INGGA-PQRIT----WEGSQNQDADVSSD--GKFMVMVSSNGGQQHIAKQDLATGG-VQVLSSTFLDETPSLAPNGTMVI 229 (269)
T ss_dssp TTSSC-CEECC----CSSSEEEEEEECTT--SSEEEEEEECSSCEEEEEEETTTCC-EEECCCSSSCEEEEECTTSSEEE
T ss_pred CCCCC-CEEEE----CCCCCCCCCCCCCC--CCEEEEEEECCCCEEEEEEECCCCC-CEEEECCCCCCCEEECCCCCEEE
T ss_conf 13310-00100----01222234322345--4305778605880125676035644-05850686544558989999999
Q ss_pred EEEC---CCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9967---9909999679926899834578644456787389999369
Q 000700 1284 SGSA---KQLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPY 1327 (1344)
Q Consensus 1284 sgS~---Dg~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspd 1327 (1344)
-.+. ...+.++++++.....+.. .. +.+...+|+|-
T Consensus 230 f~s~~~~~~~l~~~~~dg~~~~~lt~-~~-------g~~~~p~WSP~ 268 (269)
T d2hqsa1 230 YSSSQGMGSVLNLVSTDGRFKARLPA-TD-------GQVKFPAWSPY 268 (269)
T ss_dssp EEEEETTEEEEEEEETTSCCEEECCC-SS-------SEEEEEEECCC
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEC-CC-------CCEEEEEECCC
T ss_conf 99817998479999999997799857-99-------85883782898
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.75 E-value=7.9e-06 Score=53.71 Aligned_cols=279 Identities=11% Similarity=0.027 Sum_probs=149.1
Q ss_pred EEEEEEC--CCCEEEEEC--CCCCE--EEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEE
Q ss_conf 9999978--994999987--99937--88840799999984899998608998999997898099983557788505986
Q 000700 1045 IVVAADE--NERIKIWNY--EEDTL--LNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVT 1118 (1344)
Q Consensus 1045 ~Latgs~--dg~I~IWd~--~tg~~--i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~ 1118 (1344)
.|++|+. .+.|.++.+ ++++. +....... ...++.|++ +++++.|+++.. +.+..|.+....+.....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~--~~~~s~la~--s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~- 77 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQ--DEPISWMTF--DHERKNIYGAAM-KKWSSFAVKSPTEIVHEA- 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCT--TCCCSEEEE--CTTSSEEEEEEB-TEEEEEEEEETTEEEEEE-
T ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCC--CCCCCEEEE--CCCCCEEEEEEC-CCEEEEEEECCCCEEEEE-
T ss_conf 99999314999899999858889389845445168--999777999--489899999938-947899990899769876-
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCCEEEEEE---CCCEEEEEECCCC------------C---EEEEEECCCCCCCEEE
Q ss_conf 01023578997223503799935999699998---8981999987789------------6---2466534999998269
Q 000700 1119 AFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---EVSSIMLWDLEKE------------Q---QMVNPIPSSSDCSISA 1180 (1344)
Q Consensus 1119 ~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag---~Dg~I~IWDl~s~------------~---~~v~~i~~~~~~~Vts 1180 (1344)
. ... ...... +.+++++..+++.. ..+.|..+..... . .............+.+
T Consensus 78 ~-~~~---~~~p~~----v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~ 149 (365)
T d1jofa_ 78 S-HPI---GGHPRA----NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp E-EEC---CSSGGG----GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE
T ss_pred E-ECC---CCCCEE----EEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEE
T ss_conf 4-128---998678----99878998799999327997899867457887420686640330047646755688981159
Q ss_pred EEEECCCCCEEEEEEC-CCEEEEEECCCCCEEE--EEECCCCCCCCCEEEEEEECCCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 9987599989999977-9909999878997026--8425788787785999992089999999997-8992999977888
Q 000700 1181 LTASQVHGGQLAAGFV-DGSVRLYDVRTPDMLV--CSTRPHTQQVERVVGISFQPGLDPAKIVSAS-QAGDIQFLDIRNH 1256 (1344)
Q Consensus 1181 l~~~s~dg~~LvsGs~-DGsIrIwDlr~~~~~v--~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs-~DG~I~IWDl~~~ 1256 (1344)
+ .++|+|+++++... ...|.+|+........ ...... ........+.|+|+ ++++++.. .++.|.+|++...
T Consensus 150 v-~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~pd--g~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 150 M-VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPT--GNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp E-EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTT
T ss_pred E-EECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEC-CCCCCEEEEEECCC--CCEEEEECCCCCEEEEEEECCC
T ss_conf 7-888999989982079987999970688716652511112-78874089998899--8669995158998999995598
Q ss_pred CC-CEEEEEC-----------------CCCCEEEEEECCCCCEEEEEEC------CCEEEEEECC--CCEEEEEECCCCC
Q ss_conf 63-1599905-----------------7998699999079998999967------9909999679--9268998345786
Q 000700 1257 KD-AYLTIDA-----------------HRGSLSALAVHRHAPIIASGSA------KQLIKVFSLE--GEQLGTIRYHHPS 1310 (1344)
Q Consensus 1257 ~~-~i~~l~~-----------------h~~~ItsLa~sp~g~~LasgS~------Dg~I~Iwd~~--g~~l~~l~~~h~~ 1310 (1344)
.. .+..... +......+.++|+|++++++.. ...|..|+.. +............
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 305 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEE
T ss_conf 75377873124024556556665444435776316998999978997135787542279999856887144676766777
Q ss_pred CCCCCCCCEEEEEEEC-CCCEEEEEEC-CCEEEECC
Q ss_conf 4445678738999936-9978999988-98099919
Q 000700 1311 FMAQKIGSVNCLTFHP-YQVLLAAGSA-DACVSIHS 1344 (1344)
Q Consensus 1311 f~~~~~~~V~slafsp-dg~~Lasgs~-Dg~I~IWd 1344 (1344)
.......+++++| +|++|++++. ++.|.+|+
T Consensus 306 ---~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 306 ---TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ---SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ---CCCCCCCEEEECCCCCCEEEEEECCCCEEEEEE
T ss_conf ---679986478964899999999967999499999
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1e-06 Score=60.01 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCHHHCCC
Q ss_conf 99999998412799956551012011110
Q 000700 831 SQCVLAMCTLAKDPSPRIATLGRRVLSII 859 (1344)
Q Consensus 831 ~~~~~~l~~l~~Dp~p~v~~~a~~~~~~i 859 (1344)
..++..++.+..||.|.|+..+-+.+..+
T Consensus 518 ~~ilp~ll~~~~D~v~nVR~~a~~~l~~i 546 (588)
T d1b3ua_ 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999885999879999999999999
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.5e-06 Score=57.30 Aligned_cols=261 Identities=16% Similarity=0.065 Sum_probs=145.4
Q ss_pred HHHHHHHHHCCCCCC---CCCCCCHHHHHHHHHC----HHHHHHHHHHHHHHHCCCHHHH-HHHHHCCCHHHHHHHCCCC
Q ss_conf 674369772279888---8999742357887510----1458789999999731798799-9988607536668850578
Q 000700 438 QLTAFEVWLDHGSEH---KKPPEQLPIVLQVLLS----QCHRFRALVLLGRFLDMGPWAV-DLALSVGIFPYVLKLLQTT 509 (1344)
Q Consensus 438 qLtafe~~L~~g~~~---~~~p~~lP~vLq~Lls----~~~rlral~ll~~fld~~~wAv-~lal~~gifpyvlklL~s~ 509 (1344)
.+.++..+....... ......++.+++.|.+ ...|..|+..+..++...+--. .......+++.+..+++++
T Consensus 149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (458)
T d1ibrb_ 149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 228 (458)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99888898763141000233889999999986154567999999999999998861324566777777676688772599
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCC---------------
Q ss_conf 24566699999998860591223355533780124331168888367788999999999518921---------------
Q 000700 510 TPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRR--------------- 574 (1344)
Q Consensus 510 ~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~--------------- 574 (1344)
..++|..+.-.+.+|+..++.--..-+.+....++...+.+.+ ++.+.-++-.|..+++....
T Consensus 229 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 306 (458)
T d1ibrb_ 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI--DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 306 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999871999998887789999999843545--99999999999998998899998503678764189
Q ss_pred -----HHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHH
Q ss_conf -----227888445699999953179999999988899999999997411454888840025804667421069997789
Q 000700 575 -----GQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVR 649 (1344)
Q Consensus 575 -----gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VR 649 (1344)
.-....-..+...+...+.+....+.+....+|.++.-+++.+.....+.- + ..+...+...++++.+.+|
T Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r 382 (458)
T d1ibrb_ 307 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYR 382 (458)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH---H-HHHHHHHHHHHCCCCHHHH
T ss_conf 99999999988998726677640001021011223399999999999987551755---6-6789999998569998999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999964003476777899889988773899999999999997630589952399999999999961
Q 000700 650 ASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 650 aa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~ 718 (1344)
.+++++|+.+...... +.... .-..+...++...+|++|.||..+..+++++...
T Consensus 383 ~aal~~l~~i~~~~~~---------~~~~~-----~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 383 DAAVMAFGCILEGPEP---------SQLKP-----LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHTSSSSCT---------TTTCT-----TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCH---------HHHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999975477---------67898-----8999999999884899899999999999999997
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.61 E-value=2e-05 Score=50.77 Aligned_cols=242 Identities=11% Similarity=0.132 Sum_probs=160.4
Q ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEE--ECCCEE
Q ss_conf 848999986089989999978980999835577885059860102357899722350379993599969999--889819
Q 000700 1078 GISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS--GEVSSI 1155 (1344)
Q Consensus 1078 ~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaa--g~Dg~I 1155 (1344)
....+++ .++++++++-..++.|++|+.. ++. +..+............ ...+.+..+.+..++. +.++.|
T Consensus 24 ~P~gvav--d~dg~i~VaD~~n~rI~v~d~~---G~~--~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 24 EPSGVAV--NAQNDIIVADTNNHRIQIFDKE---GRF--KFQFGECGKRDSQLLY-PNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp CEEEEEE--CTTCCEEEEEGGGTEEEEECTT---SCE--EEEECCBSSSTTCBSS-EEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCCEEEE--CCCCCEEEEECCCCEEEEEECC---CCE--EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 9007999--4999899997998989999699---999--9981665788664226-630001234455200004775310
Q ss_pred EEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 99987789624665349999982699987599989999977990999987899702684257887877859999920899
Q 000700 1156 MLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLD 1235 (1344)
Q Consensus 1156 ~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~ 1235 (1344)
..++... . ....+..........+ ...+++.++++....+.+.+++... + .+..+. ...+......+++.++
T Consensus 96 ~~~~~~g-~-~~~~~~~~~~~~p~~~-avd~~G~i~v~~~~~~~~~~~~~~g-~-~~~~~g-~~~~~~~~~~i~~d~~-- 167 (279)
T d1q7fa_ 96 QIYNQYG-Q-FVRKFGATILQHPRGV-TVDNKGRIIVVECKVMRVIIFDQNG-N-VLHKFG-CSKHLEFPNGVVVNDK-- 167 (279)
T ss_dssp EEECTTS-C-EEEEECTTTCSCEEEE-EECTTSCEEEEETTTTEEEEECTTS-C-EEEEEE-CTTTCSSEEEEEECSS--
T ss_pred CCCCCCC-C-CEEECCCCCCCCCCEE-CCCCCCCEEEEEECCCEEEEECCCC-C-EEECCC-CCCCCCCCCEEEECCC--
T ss_conf 0000256-3-0240388864254200-0014784799963263256762687-5-010022-0010256624320120--
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE--CCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEEECCCCCCC
Q ss_conf 99999997899299997788863159990--57998699999079998999967-9909999679926899834578644
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTID--AHRGSLSALAVHRHAPIIASGSA-KQLIKVFSLEGEQLGTIRYHHPSFM 1312 (1344)
Q Consensus 1236 g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~--~h~~~ItsLa~sp~g~~LasgS~-Dg~I~Iwd~~g~~l~~l~~~h~~f~ 1312 (1344)
++.+++....+.|++||... +.+.++. +......++++.+++.++++-+. ++.|.+|+.+|+.+..+.. ..
T Consensus 168 g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~-~~--- 241 (279)
T d1q7fa_ 168 QEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-KV--- 241 (279)
T ss_dssp SEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEE-SS---
T ss_pred EEEEEEECCCCCEEEEECCC--CEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEC-CC---
T ss_conf 01786201355100230479--4445301132114876232314786999978998089999999999999968-88---
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEECC
Q ss_conf 45678738999936997899998898099919
Q 000700 1313 AQKIGSVNCLTFHPYQVLLAAGSADACVSIHS 1344 (1344)
Q Consensus 1313 ~~~~~~V~slafspdg~~Lasgs~Dg~I~IWd 1344 (1344)
.......+++.+++.+++ ++.++.|++|.
T Consensus 242 --~~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 242 --KHAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp --CCSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred --CCCCEEEEEEECCCCEEE-EECCCEEEEEE
T ss_conf --889883799908991999-91899699987
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.37 E-value=7.8e-05 Score=46.62 Aligned_cols=246 Identities=11% Similarity=0.100 Sum_probs=129.0
Q ss_pred CCEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEEECCC-CCCCCEEEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 98179999479999999978-------9949999879993788840799-999984899998608998999997898099
Q 000700 1032 KGTKTALLQPFSPIVVAADE-------NERIKIWNYEEDTLLNSFDNHD-FPDKGISKLCLVNELDVSLLLVASCNGNIR 1103 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~-------dg~I~IWd~~tg~~i~~l~~h~-~~~~~ItsL~f~ns~d~~~Litgs~DG~Ir 1103 (1344)
..+...+|+++|++.++... ++.|..|+.+++.......... .....-..+.| .++++.++++...+.|.
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~--~~dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC--DRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEE--CSSSSEEEEEETTTEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE--ECCCCEEEEEECCCEEE
T ss_conf 8971739969999999987540234529999999899995999977765567885306999--07999899997798399
Q ss_pred EEECCCCCCCEEEEEEEECCCCCC-CCCCCCCEEEEEECCCCEEEEEEC----------------CCEEEEEECCCCCEE
Q ss_conf 983557788505986010235789-972235037999359996999988----------------981999987789624
Q 000700 1104 IWKDYDQKDKQKLVTAFSSIQGHK-PGVRCSNVVVDWQQQSGYLYASGE----------------VSSIMLWDLEKEQQM 1166 (1344)
Q Consensus 1104 IWdi~~~~~~~~lv~~~~~l~~h~-~~V~s~~~~v~ws~~~~~Llaag~----------------Dg~I~IWDl~s~~~~ 1166 (1344)
..+... +..... .....+.. ...+. +.+.+++. ++++.. .|.|..++.....
T Consensus 96 ~~~~~g--~~~~~~--~~~~~g~~~~~pnd----l~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~-- 164 (314)
T d1pjxa_ 96 VVQTDG--TFEEIA--KKDSEGRRMQGCND----CAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-- 164 (314)
T ss_dssp EEETTS--CEEECC--SBCTTSCBCBCCCE----EEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE--
T ss_pred EEECCC--CEEEEE--ECCCCCCCCCCCCE----EEECCCCC-EEEECCCCCCCCCCCCCEECCCCCEEEEEEECCCE--
T ss_conf 994777--479997--33432454578727----89888998-99914866754320110002688438999525740--
Q ss_pred EEEECCCCCCCEEEEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEEE--EECCCC-CCCCCEEEEEEECCCCCCE
Q ss_conf 66534999998269998759998-----999997799099998789970268--425788-7877859999920899999
Q 000700 1167 VNPIPSSSDCSISALTASQVHGG-----QLAAGFVDGSVRLYDVRTPDMLVC--STRPHT-QQVERVVGISFQPGLDPAK 1238 (1344)
Q Consensus 1167 v~~i~~~~~~~Vtsl~~~s~dg~-----~LvsGs~DGsIrIwDlr~~~~~v~--~~~~~~-~h~~~I~sI~~sp~~~g~~ 1238 (1344)
..... .... -..+ .+.++++ ++++.+..+.|..||+........ .+.... ........+++..+ |++
T Consensus 165 ~~~~~-~~~~-pNGi-~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~--Gnl 239 (314)
T d1pjxa_ 165 IQVDT-AFQF-PNGI-AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED--NNL 239 (314)
T ss_dssp EEEEE-EESS-EEEE-EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT--CCE
T ss_pred EEEEC-CCCE-EEEE-EECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECC--CCE
T ss_conf 37507-8532-2136-99788776303799986024311776116765430156899713356664102578347--857
Q ss_pred EEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEEC
Q ss_conf 999978992999977888631599905799869999907999-8999967990999967
Q 000700 1239 IVSASQAGDIQFLDIRNHKDAYLTIDAHRGSLSALAVHRHAP-IIASGSAKQLIKVFSL 1296 (1344)
Q Consensus 1239 Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~~ItsLa~sp~g~-~LasgS~Dg~I~Iwd~ 1296 (1344)
.++....+.|..||...+ .....+.......++++|.++++ ++++.+.++.|..++.
T Consensus 240 yVa~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 240 LVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCEEEEEECCCC-EEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 999827999999969999-7999997999987899992898999999878991999978
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=8.1e-05 Score=46.51 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 36668850578245666999999988605912233555337801243311688883677889999999995189212278
Q 000700 499 FPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEA 578 (1344)
Q Consensus 499 fpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~ 578 (1344)
.|-++++|+++.++.+..++-.+..++..+...+..+.+.|+....++.|.+++ ++.|.-++.+|..++.+++..|..
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--QNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 899999857999999999999999998499999999998885999999877999--899999999999997499888999
Q ss_pred HHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8844569999995317999999998889999999999741145
Q 000700 579 CIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDF 621 (1344)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~ 621 (1344)
..+.+.+..++..+.. +.++++|..++-+|..+..+.
T Consensus 82 i~~~g~v~~li~~l~~------~~~~~~~~~a~~~l~~l~~~~ 118 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRR------TGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHTTCHHHHHHHHTT------CCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHCCCHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHH
T ss_conf 9987982899999843------373889999999999998641
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.35 E-value=8.7e-05 Score=46.28 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=138.3
Q ss_pred CCEEEEEEEEECCCCEEEEEEC-------CCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 9848999986089989999978-------980999835577885059860102357899722350379993599969999
Q 000700 1077 KGISKLCLVNELDVSLLLVASC-------NGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYAS 1149 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~Litgs~-------DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaa 1149 (1344)
.....++| .+++++.++... +|.|..|+..+ +..... .............-+.+.++++.++++
T Consensus 18 ~g~EGpa~--d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~--~~~~~~-----~~~~~~~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVI-----CKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEE-----ECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CCCEEEEE--ECCCCEEEEECCCCCCCCCCCEEEEEECCC--CCEEEE-----ECCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 89717399--699999999875402345299999998999--959999-----777655678853069990799989999
Q ss_pred ECCCEEEEEECCCCCEEEEEECCCCCC---CEEEEEEECCCCCEEEEEEC---------------CCEEEEEECCCCCEE
Q ss_conf 889819999877896246653499999---82699987599989999977---------------990999987899702
Q 000700 1150 GEVSSIMLWDLEKEQQMVNPIPSSSDC---SISALTASQVHGGQLAAGFV---------------DGSVRLYDVRTPDML 1211 (1344)
Q Consensus 1150 g~Dg~I~IWDl~s~~~~v~~i~~~~~~---~Vtsl~~~s~dg~~LvsGs~---------------DGsIrIwDlr~~~~~ 1211 (1344)
...+.|..+|..... ........... ....+ .+.++|++.++... +|.|..++... + .
T Consensus 89 d~~~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl-~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~ 164 (314)
T d1pjxa_ 89 DMRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-M 164 (314)
T ss_dssp ETTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-E
T ss_pred ECCCEEEEEECCCCE-EEEEECCCCCCCCCCCCEE-EECCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEEEECC-C-E
T ss_conf 779839999477747-9997334324545787278-9888998999148667543201100026884389995257-4-0
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCC-----EEEEEECCCCEEEEECCCCCCCEE-----EEEC-CCCCEEEEEECCCCC
Q ss_conf 68425788787785999992089999-----999997899299997788863159-----9905-799869999907999
Q 000700 1212 VCSTRPHTQQVERVVGISFQPGLDPA-----KIVSASQAGDIQFLDIRNHKDAYL-----TIDA-HRGSLSALAVHRHAP 1280 (1344)
Q Consensus 1212 v~~~~~~~~h~~~I~sI~~sp~~~g~-----~Lvsgs~DG~I~IWDl~~~~~~i~-----~l~~-h~~~ItsLa~sp~g~ 1280 (1344)
....... ...+.++|+++ +. ++++-+..+.|..||+...+.... .+.. .....-.+++..+|+
T Consensus 165 ~~~~~~~----~~pNGi~~~~d--~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 165 IQVDTAF----QFPNGIAVRHM--NDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEE----SSEEEEEEEEC--TTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred EEEECCC----CEEEEEEECCC--CCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCC
T ss_conf 3750785----32213699788--77630379998602431177611676543015689971335666410257834785
Q ss_pred EEEEEECCCEEEEEECC-CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCE-EEEEECCCEEEEC
Q ss_conf 89999679909999679-926899834578644456787389999369978-9999889809991
Q 000700 1281 IIASGSAKQLIKVFSLE-GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVL-LAAGSADACVSIH 1343 (1344)
Q Consensus 1281 ~LasgS~Dg~I~Iwd~~-g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~-Lasgs~Dg~I~IW 1343 (1344)
+.++....+.|.+|+.+ +..+..+.. .. ...++++|.++++. +++.+.+|.|...
T Consensus 239 lyVa~~~~g~I~~~dp~~g~~~~~i~~-p~-------~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 239 LLVANWGSSHIEVFGPDGGQPKMRIRC-PF-------EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEEEC-SS-------SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEEEC-CC-------CCEEEEEEECCCCEEEEEECCCCCEEEE
T ss_conf 799982799999996999979999979-99-------9878999928989999998789919999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=0.00012 Score=45.36 Aligned_cols=39 Identities=3% Similarity=0.046 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCEEEEEECC---CEEEEEE-CCCCEEEEEEC
Q ss_conf 986999990799989999679---9099996-79926899834
Q 000700 1268 GSLSALAVHRHAPIIASGSAK---QLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1268 ~~ItsLa~sp~g~~LasgS~D---g~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.....+.|+|++.+++..... -.+.+++ .+++.+..+..
T Consensus 410 ~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~ 452 (465)
T d1xfda1 410 CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET 452 (465)
T ss_dssp CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 9879999999999999980069998499999999979999738
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.28 E-value=0.00013 Score=45.17 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=43.8
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 99817999947999999997899499998799937888407999999848999986089989999978
Q 000700 1031 EKGTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC 1098 (1344)
Q Consensus 1031 ~~~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~ 1098 (1344)
+..+..+.|.+++++.++-...+.|..|+.++++....+.... .....+++ .+++.++++...
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---~~p~gla~--~~dG~l~va~~~ 101 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---ANPAAIKI--HKDGRLFVCYLG 101 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---SSEEEEEE--CTTSCEEEEECT
T ss_pred CCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCC---CCEEEEEE--CCCCCEEEEECC
T ss_conf 8674707899999999997799999999899995999994899---87038999--999999999568
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=0.00014 Score=44.80 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHHCHH--HHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 235788751014--587899999997317987999988607536668850578245666999999988605912233555
Q 000700 459 LPIVLQVLLSQC--HRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLV 536 (1344)
Q Consensus 459 lP~vLq~Lls~~--~rlral~ll~~fld~~~wAv~lal~~gifpyvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~ 536 (1344)
.|.++++|.|.. -+..|...|++.---.+-.+......|+.|-.+++|.++..+.|..++..+..+...++..+..+.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 89999985799999999999999999849999999999888599999987799989999999999999749988899999
Q ss_pred HCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 337801243311688883677889999999995189
Q 000700 537 KDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGH 572 (1344)
Q Consensus 537 k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~ 572 (1344)
+.++...+++.+..... ++.|..++-+|+.+..+.
T Consensus 84 ~~g~v~~li~~l~~~~~-~~~~~~a~~~l~~l~~~~ 118 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSS
T ss_pred HCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 87982899999843373-889999999999998641
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.21 E-value=0.00017 Score=44.13 Aligned_cols=236 Identities=13% Similarity=0.122 Sum_probs=140.9
Q ss_pred CCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC----C
Q ss_conf 984899998608998999997898099983557788505986010235789972235037999359996999988----9
Q 000700 1077 KGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE----V 1152 (1344)
Q Consensus 1077 ~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~----D 1152 (1344)
..+..++| .+++++.++-...+.|..|+... +..... .......... +++.+++..+++... .
T Consensus 40 ~~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g--~~~~~~-----~~~~~~~p~g----la~~~dG~l~va~~~~~~~~ 106 (319)
T d2dg1a1 40 LQLEGLNF--DRQGQLFLLDVFEGNIFKINPET--KEIKRP-----FVSHKANPAA----IKIHKDGRLFVCYLGDFKST 106 (319)
T ss_dssp CCEEEEEE--CTTSCEEEEETTTCEEEEECTTT--CCEEEE-----EECSSSSEEE----EEECTTSCEEEEECTTSSSC
T ss_pred CCCEECEE--CCCCCEEEEECCCCEEEEEECCC--CEEEEE-----EECCCCCEEE----EEECCCCCEEEEECCCCCCC
T ss_conf 67470789--99999999977999999998999--959999-----9489987038----99999999999956897311
Q ss_pred CEEEEEECCCCCEEEEEECC-CCCCCEEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCCCCCCE
Q ss_conf 81999987789624665349-999982699987599989999977------99099998789970268425788787785
Q 000700 1153 SSIMLWDLEKEQQMVNPIPS-SSDCSISALTASQVHGGQLAAGFV------DGSVRLYDVRTPDMLVCSTRPHTQQVERV 1225 (1344)
Q Consensus 1153 g~I~IWDl~s~~~~v~~i~~-~~~~~Vtsl~~~s~dg~~LvsGs~------DGsIrIwDlr~~~~~v~~~~~~~~h~~~I 1225 (1344)
+.+...+..... ....... ........+ ...++|++.++... .|.+..++..... ........ ...
T Consensus 107 ~~i~~~~~~~~~-~~~~~~~~~~~~~~nd~-~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~----~~p 179 (319)
T d2dg1a1 107 GGIFAATENGDN-LQDIIEDLSTAYCIDDM-VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNI----SVA 179 (319)
T ss_dssp CEEEEECTTSCS-CEEEECSSSSCCCEEEE-EECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEE----SSE
T ss_pred EEEEEECCCCCE-EEEECCCCCCCCCCCCE-EEEECCCEEECCCCCCCCCCCCEEEEEECCCCE-EEEEEECC----CEE
T ss_conf 049987389963-64442677755587522-677306532001354002574215788416633-57886123----301
Q ss_pred EEEEEECCCCCCEE-EEEECCCCEEEEECCCCCCCEEEEE-------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 99999208999999-9997899299997788863159990-------579986999990799989999679909999679
Q 000700 1226 VGISFQPGLDPAKI-VSASQAGDIQFLDIRNHKDAYLTID-------AHRGSLSALAVHRHAPIIASGSAKQLIKVFSLE 1297 (1344)
Q Consensus 1226 ~sI~~sp~~~g~~L-vsgs~DG~I~IWDl~~~~~~i~~l~-------~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~ 1297 (1344)
+.++|+++ ++.| ++-+..+.|..||+........... ......-.+++..+|.+.++....+.|.+|+.+
T Consensus 180 nGia~s~d--g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 180 NGIALSTD--EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEEECTT--SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEEECCC--CCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECCC
T ss_conf 00010122--2127874046891479997699836202463333125776410364173899999998489989999799
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 926899834578644456787389999369978999988
Q 000700 1298 GEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1298 g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
|+.+..+.. ... ...+...+++++|.+....+.+...
T Consensus 258 G~~l~~i~~-P~~-~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 258 GYPIGQILI-PGR-DEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp SCEEEEEEC-TTG-GGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCEEEEEEC-CCC-CCCCCCEEEEEEEECCCCEEEEECC
T ss_conf 959889968-875-7786750466778079988999857
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.8e-05 Score=46.25 Aligned_cols=200 Identities=13% Similarity=0.006 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHCH----HHHHHHHHHHHHHHCCCHHHHHHH-----------HHCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 997423578875101----458789999999731798799998-----------86075366688505782456669999
Q 000700 455 PPEQLPIVLQVLLSQ----CHRFRALVLLGRFLDMGPWAVDLA-----------LSVGIFPYVLKLLQTTTPELRQILVF 519 (1344)
Q Consensus 455 ~p~~lP~vLq~Lls~----~~rlral~ll~~fld~~~wAv~la-----------l~~gifpyvlklL~s~~~elr~~~~F 519 (1344)
+|+-+++.+++|.+. .-|.-|.++|.+++....-..... ..-.+..-.++.+.+.....|.. +-
T Consensus 32 ~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~-~~ 110 (458)
T d1ibrb_ 32 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSA-SQ 110 (458)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSH-HH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
T ss_conf 35899999999844899989999999999988632671111677641114999999999999986147982899999-99
Q ss_pred HHHHHHCC-CHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCC
Q ss_conf 99988605-91223355533780124331168888367788999999999518921227888445699999953179999
Q 000700 520 IWTKILAL-DKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPN 598 (1344)
Q Consensus 520 Iwa~il~~-~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~ 598 (1344)
+++.+... .+... -+......+..+.+.......+.-+..+++.++.........-....+...+...+...
T Consensus 111 ~~~~i~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~--- 183 (458)
T d1ibrb_ 111 CVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--- 183 (458)
T ss_dssp HHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT---
T ss_pred HHHHHHHHHCCCCC----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99999998678012----75105789999882032177888899888898763141000233889999999986154---
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHH-HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999988899999999997411454888840-025804667421069997789999999964003476
Q 000700 599 DAQTEPLFLQWLCLCLGKLWEDFTEAQTIG-RRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDIGF 664 (1344)
Q Consensus 599 ~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~-~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~~~ 664 (1344)
++.+++|..++-+++.+........... ........+..++.|++|+||.+++-+|+.++....
T Consensus 184 --~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~ 248 (458)
T d1ibrb_ 184 --EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248 (458)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --56799999999999999886132456677777767668877259989999999999999998719
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=0.00013 Score=45.17 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=59.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 24331168888367788999999999518921227888445699999953179999999988899999999997411454
Q 000700 543 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 622 (1344)
Q Consensus 543 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~ 622 (1344)
++...+.+++ ...|.-+++.++.+.......+..-.-..++..+...+. |++|.+|..++.++|++.+..+
T Consensus 370 ~i~~~l~~~~--~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T d1qgra_ 370 FIKEHIKNPD--WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-------DPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998602513--788899999887666432298898999999999998615-------7860899999988999999813
Q ss_pred HHHHH-HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88884-0025804667421069997789999999964003
Q 000700 623 EAQTI-GRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLD 661 (1344)
Q Consensus 623 ~~~~~-~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~ 661 (1344)
..... ..-..+...+...+ +..|.|+..++.++..+..
T Consensus 441 ~~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 441 EAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp GGTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
T ss_conf 11101777666799999882-6987999999987889999
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.00022 Score=43.43 Aligned_cols=53 Identities=6% Similarity=-0.065 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9988899999999997411454888840025804667421069997789999999964
Q 000700 601 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 658 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~ 658 (1344)
+++|.+|..++.+|+.++...... ...+...+...++|..+.||.+++.+++.
T Consensus 98 d~~~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 98 DKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISV 150 (276)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 997668999999999870246210-----18999999998647204899999998741
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.00061 Score=40.24 Aligned_cols=217 Identities=10% Similarity=0.060 Sum_probs=124.3
Q ss_pred CCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-CCEEEEEEC
Q ss_conf 9817999947999999997899---499998799937888407999999848999986089989999978-980999835
Q 000700 1032 KGTKTALLQPFSPIVVAADENE---RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-NGNIRIWKD 1107 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs~dg---~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~-DG~IrIWdi 1107 (1344)
..+..-+|||||+.||...... .+.+.+...+.. ..+..+. .......| ++++..++.... ++...++..
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~--spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAF--SPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCS---SCEEEEEE--CTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEE---CCCCCCEE--CCCCCEEEEEEECCCCCCEEEC
T ss_conf 8426038878999899998152675134431136750-6776420---24543024--4889864676402786410000
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCC--EEEEEECCCCCEEEEEECCCCCCCEEEEEEE
Q ss_conf 5778850598601023578997223503799935999699998-898--1999987789624665349999982699987
Q 000700 1108 YDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVS--SIMLWDLEKEQQMVNPIPSSSDCSISALTAS 1184 (1344)
Q Consensus 1108 ~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg--~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~ 1184 (1344)
......... ......... ...++..+..++... .++ .|...+..... ...+... ....... .+
T Consensus 113 ~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~-~~~~~~~-~~ 178 (269)
T d2hqsa1 113 DLASGQIRQ------VTDGRSNNT----EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWE-GSQNQDA-DV 178 (269)
T ss_dssp ETTTCCEEE------CCCCSSCEE----EEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCS-SSEEEEE-EE
T ss_pred CCCCCCCEE------EEECCCCCC----CCCCCCCCCCCEECCCCCCCCEEEEEECCCCC--CEEEECC-CCCCCCC-CC
T ss_conf 222122000------010144211----45434554433000012687438654213310--0010001-2222343-22
Q ss_pred CCCCCEEEEEECCC-EEE--EEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEC---CCCEEEEECCCCCC
Q ss_conf 59998999997799-099--9987899702684257887877859999920899999999978---99299997788863
Q 000700 1185 QVHGGQLAAGFVDG-SVR--LYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQ---AGDIQFLDIRNHKD 1258 (1344)
Q Consensus 1185 s~dg~~LvsGs~DG-sIr--IwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~---DG~I~IWDl~~~~~ 1258 (1344)
++++..++..+.++ ... +.|...+. .... . +........|+|+ |+.|+..+. ...+.++++...
T Consensus 179 spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-~---~~~~~~~p~~SPD--G~~i~f~s~~~~~~~l~~~~~dg~-- 248 (269)
T d2hqsa1 179 SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVL-S---STFLDETPSLAPN--GTMVIYSSSQGMGSVLNLVSTDGR-- 248 (269)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEETTTCC--EEEC-C---CSSSCEEEEECTT--SSEEEEEEEETTEEEEEEEETTSC--
T ss_pred CCCCCEEEEEEECCCCEEEEEEECCCCC--CEEE-E---CCCCCCCEEECCC--CCEEEEEECCCCCCEEEEEECCCC--
T ss_conf 3454305778605880125676035644--0585-0---6865445589899--999999981799847999999999--
Q ss_pred CEEEEECCCCCEEEEEECCC
Q ss_conf 15999057998699999079
Q 000700 1259 AYLTIDAHRGSLSALAVHRH 1278 (1344)
Q Consensus 1259 ~i~~l~~h~~~ItsLa~sp~ 1278 (1344)
....+....+.+...+|+|.
T Consensus 249 ~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 249 FKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCC
T ss_conf 77998579985883782898
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.0002 Score=43.65 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 998889999999999741145488884002580466742106999778999999996400
Q 000700 601 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
+..+..|.+++.+||.+....+. .....+...+...++|++++||.++.++||.+.
T Consensus 826 ~~~~~~~~~al~~Lge~~~~~~~----~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~ 881 (1207)
T d1u6gc_ 826 RSTDSIRLLALLSLGEVGHHIDL----SGQLELKSVILEAFSSPSEEVKSAASYALGSIS 881 (1207)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCC----CSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 22599999999999999985253----115999999999808998899999999999999
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.0009 Score=39.05 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99888999999999974114548888400258046674210699977899999999640034
Q 000700 601 QTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 662 (1344)
Q Consensus 601 ~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 662 (1344)
++.+..|..+++++|.+............-..+...+...+.|++|.||.+++.+++.+...
T Consensus 377 ~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 51378889999988766643229889899999999999861578608999999889999998
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00092 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=18.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99763058995239999999999996116038
Q 000700 692 SLLTVVSDGSPLVRAEVAVALARFAFGHKQHL 723 (1344)
Q Consensus 692 ~ll~~~~D~sp~VR~e~~~~l~~~~~~~~~~f 723 (1344)
.++....|+++.||..++.+++.+....-..+
T Consensus 857 ~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~ 888 (1207)
T d1u6gc_ 857 VILEAFSSPSEEVKSAASYALGSISVGNLPEY 888 (1207)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998089988999999999999997628887
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00097 Score=38.83 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=55.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 66885057824566699999998860591223355533780124331168888367788999999999518921227888
Q 000700 501 YVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACI 580 (1344)
Q Consensus 501 yvlklL~s~~~elr~~~~FIwa~il~~~~~~q~~l~k~~~~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~ 580 (1344)
++...++++..+.|.-+++.++.|...-.......+ +....+++..|.+++ +..|.-+|.+|++++.........-+
T Consensus 399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~~~~~~~ 475 (888)
T d1qbkb_ 399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK--ALVRSITCWTLSRYAHWVVSQPPDTY 475 (888)
T ss_dssp HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC--HHHHHHHHHHHHHTHHHHHSSCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988751220568999999986435555787742120-355679998426998--99999999999999998665415655
Q ss_pred HHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44569999995317999999998889999999999741145488884002580466742106999778999999996400
Q 000700 581 EAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
-..++..++..+. |++|.||..+|.+|+.|.+.....- .-.-..+...++.++.+....++..+.-++++++
T Consensus 476 ~~~~l~~ll~~l~-------d~~~~V~~~a~~al~~l~~~~~~~l-~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~ 547 (888)
T d1qbkb_ 476 LKPLMTELLKRIL-------DSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA 547 (888)
T ss_dssp TTTHHHHHHHHHS-------SSCHHHHHHHHHHHHHHHHHHTTSS-GGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4555899998842-------8987899989999999998755311-3579999999999986003779999999999999
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00044 Score=41.24 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=42.1
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 24331168888367788999999999518921227888445699999953179999999988899999999997411454
Q 000700 543 YFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFT 622 (1344)
Q Consensus 543 yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~ 622 (1344)
-+++.|++++ +..|.-++.+|+.+- ...++..+..+++ |+++.+|..++.+|+.+.....
T Consensus 23 ~L~~~L~d~~--~~vR~~A~~~L~~~~-----------~~~~~~~l~~~l~-------d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 23 ELFRLLDDHN--SLKRISSARVLQLRG-----------GQDAVRLAIEFCS-------DKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp HHHHHTTCSS--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHT-------CSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHCCCC--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9998846999--999999999998618-----------8739999999980-------9998999999999987202212
Q ss_pred HHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88884002580466742106999778999999996400
Q 000700 623 EAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 623 ~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
..... ....+-.+++|++|.||.+++.+|+.+.
T Consensus 83 ~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~ 115 (276)
T d1oyza_ 83 CEDNV-----FNILNNMALNDKSACVRATAIESTAQRC 115 (276)
T ss_dssp THHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CCCCH-----HHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 12022-----9999999866997668999999999870
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.69 E-value=0.0013 Score=37.80 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 77889999999995189212278884456999999531799999999888999999999974114
Q 000700 556 EQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620 (1344)
Q Consensus 556 ~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 620 (1344)
..|.-+++.++.+..........-.-..++..+...+. +++|.+|..++.++|++...
T Consensus 384 ~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-------DQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG-------CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH
T ss_conf 88888998999988410266688878999999988733-------76205666898899999998
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00072 Score=39.75 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=9.9
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 742106999778999999996400
Q 000700 637 YVPLLSEPQPEVRASAVFSLGTLL 660 (1344)
Q Consensus 637 l~~ll~D~sP~VRaa~v~aL~~~i 660 (1344)
++..+.|+.|.||.+++.||+.|+
T Consensus 483 ll~~l~d~~~~V~~~a~~al~~l~ 506 (888)
T d1qbkb_ 483 LLKRILDSNKRVQEAACSAFATLE 506 (888)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 998842898789998999999999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.0017 Score=37.17 Aligned_cols=270 Identities=11% Similarity=0.034 Sum_probs=119.3
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCC---------------CCCEEEEEEEEECCCCEEEEEE
Q ss_conf 8179999479999999978994999987999378884079999---------------9984899998608998999997
Q 000700 1033 GTKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFP---------------DKGISKLCLVNELDVSLLLVAS 1097 (1344)
Q Consensus 1033 ~I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~---------------~~~ItsL~f~ns~d~~~Litgs 1097 (1344)
.+....|+|+|+.+|... ++.+.+.+..++..+......... .+.-..+-| +||+..|+...
T Consensus 115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~ 191 (465)
T d1xfda1 115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAA 191 (465)
T ss_dssp CCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEE--CCCCCEEEEEE
T ss_conf 311002426785699996-132999954899658971126766044366431001230366434897--79898689999
Q ss_pred -CCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCC---
Q ss_conf -8980999835577885059860102357899722350379993599969999889819999877896246653499---
Q 000700 1098 -CNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSS--- 1173 (1344)
Q Consensus 1098 -~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~--- 1173 (1344)
++..|..+.+....+. ....+.. ..+...+.. .....+.++|+..+..........
T Consensus 192 ~D~s~V~~~~~~~~~~~------------~~p~~~~----~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~~~~~ 251 (465)
T d1xfda1 192 INDSRVPIMELPTYTGS------------IYPTVKP----YHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPR 251 (465)
T ss_dssp EECTTSCEEEECCCSSS------------SSCCCEE----EECCBTTSC----CCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ECCCCCCEEECCCCCCC------------CCCEEEE----EECCCCCCC----CCCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 53666614641234454------------4431334----530256888----972137998368981789995257676
Q ss_pred -CCCCEEEEEEECCCCCEEEEEEC-C---CEEEEEECCCCCEEEEEECCCCCCCCCE----EEEEEECCCCCCEE--EEE
Q ss_conf -99982699987599989999977-9---9099998789970268425788787785----99999208999999--999
Q 000700 1174 -SDCSISALTASQVHGGQLAAGFV-D---GSVRLYDVRTPDMLVCSTRPHTQQVERV----VGISFQPGLDPAKI--VSA 1242 (1344)
Q Consensus 1174 -~~~~Vtsl~~~s~dg~~LvsGs~-D---GsIrIwDlr~~~~~v~~~~~~~~h~~~I----~sI~~sp~~~g~~L--vsg 1242 (1344)
.+..+..+ .|.+++++++.... + ..+.++|..+++. ....... ...+| ....|.++ +..+ +..
T Consensus 252 ~~~~y~~~~-~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~-~~~~~e~--~~~wv~~~~~~p~~~~d--g~~~~fi~~ 325 (465)
T d1xfda1 252 MREYYITMV-KWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDE--SEAWLHRQNEEPVFSKD--GRKFFFIRA 325 (465)
T ss_dssp GSSEEEEEE-EESSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEE--CSSCCCCCCCCCEECTT--SCSEEEEEE
T ss_pred CCCCEEEEE-EECCCCEEEEEEECCCCCCCEEEEECCCCCCE-EEEEEEC--CCCEEECCCCCEEECCC--CCEEEEEEE
T ss_conf 666304566-87579938999974100301379970799927-8778972--78517356786057468--980577776
Q ss_pred E-CCC--CEEEEECC-----CCCCCEEEEECCCCCEEEE-EECCCCCEE-EEEECCC--EEEEEE--CCCCE-EEEEECC
Q ss_conf 7-899--29999778-----8863159990579986999-990799989-9996799--099996--79926-8998345
Q 000700 1243 S-QAG--DIQFLDIR-----NHKDAYLTIDAHRGSLSAL-AVHRHAPII-ASGSAKQ--LIKVFS--LEGEQ-LGTIRYH 1307 (1344)
Q Consensus 1243 s-~DG--~I~IWDl~-----~~~~~i~~l~~h~~~ItsL-a~sp~g~~L-asgS~Dg--~I~Iwd--~~g~~-l~~l~~~ 1307 (1344)
+ .+| .+...++. ..+..+..+....-.|+.+ .|+..+..+ .++..++ .-.+|. +.+.. ...+..
T Consensus 326 se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~- 404 (465)
T d1xfda1 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC- 404 (465)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST-
T ss_pred EEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEECC-
T ss_conf 5431667168998315666678862698226992199778983899999999968999826899997789986055314-
Q ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 78644456787389999369978999988
Q 000700 1308 HPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1308 h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
.. .......++.|+|++++++....
T Consensus 405 ~~----~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 405 DL----VENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp TS----SSSCCCCEEEECTTSSEEEEECC
T ss_pred CC----CCCCCEEEEEECCCCCEEEEEEE
T ss_conf 46----78898799999999999999800
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.48 E-value=0.00016 Score=44.40 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=64.3
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56999999531799999999888999999999974114548888400258046674210699977899999999640034
Q 000700 583 GLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGTLLDI 662 (1344)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~~i~~ 662 (1344)
..+..++..|+ +++|.+|..++.+||.+... . +...|..+++|++|.||.+++.+|+.+- .
T Consensus 22 ~~~~~L~~~l~-------d~~~~vR~~a~~~L~~~~~~--~---------~~~~L~~~l~d~~~~VR~~a~~aL~~i~-~ 82 (111)
T d1te4a_ 22 EAFEPLLESLS-------NEDWRIRGAAAWIIGNFQDE--R---------AVEPLIKLLEDDSGFVRSGAARSLEQIG-G 82 (111)
T ss_dssp TTHHHHHHGGG-------CSCHHHHHHHHHHHGGGCSH--H---------HHHHHHHHHHHCCTHHHHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCHH--H---------HHHHHHHHHCCCHHHHHHHHHHHHHHHC-C
T ss_conf 89999999974-------99878999999998761012--3---------2799873302303379999999999867-6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 767778998899887738999999999999976305899523999999999
Q 000700 663 GFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALA 713 (1344)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~ 713 (1344)
. .....+..+..|+++.||++++.+|.
T Consensus 83 -----------------~-------~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 -----------------E-------RVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp -----------------H-------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -----------------C-------CHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf -----------------1-------14999999882998999999999987
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.36 E-value=0.0035 Score=34.88 Aligned_cols=215 Identities=8% Similarity=-0.043 Sum_probs=81.8
Q ss_pred EEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCE
Q ss_conf 999947999999997-8994999987999378884079999998489999860899899999789809998355778850
Q 000700 1036 TALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDKQ 1114 (1344)
Q Consensus 1036 si~fspdg~~Latgs-~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~~ 1114 (1344)
...|++.+..|.-.+ ..+.|..|+.++++. ..+... ..+.++.+ ..++.++++ +.+ .+..+|..+ ++.
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~----~~~~~i~~--~~dg~l~va-~~~-gl~~~d~~t--g~~ 90 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALP----FMGSALAK--ISDSKQLIA-SDD-GLFLRDTAT--GVL 90 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECS----SCEEEEEE--EETTEEEEE-ETT-EEEEEETTT--CCE
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEE-EEEECC----CCCEEEEE--ECCCCEEEE-EEC-CCEEEECCC--CEE
T ss_conf 8759899999999987899999998998959-999899----98179899--659988999-737-638950464--513
Q ss_pred EEEEEEECCCCCCC--CCCCCCEEEEEECCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 59860102357899--72235037999359996999988----9819999877896246653499999826999875999
Q 000700 1115 KLVTAFSSIQGHKP--GVRCSNVVVDWQQQSGYLYASGE----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHG 1188 (1344)
Q Consensus 1115 ~lv~~~~~l~~h~~--~V~s~~~~v~ws~~~~~Llaag~----Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg 1188 (1344)
+... ....... ..+. +...+++...+.... .+.-.+|....++ ....... ... -..+ .+++++
T Consensus 91 ~~l~---~~~~~~~~~~~nd----~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~-~~~-~Ng~-~~s~d~ 159 (295)
T d2ghsa1 91 TLHA---ELESDLPGNRSND----GRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFAD-ISI-PNSI-CFSPDG 159 (295)
T ss_dssp EEEE---CSSTTCTTEEEEE----EEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEE-ESS-EEEE-EECTTS
T ss_pred EEEE---EEECCCCCCCCEE----EEECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEEC-CCC-CCEE-EECCCC
T ss_conf 5786---6404787661013----57979999988742643133330576622996-8998650-687-6402-465877
Q ss_pred CEE-EEEECCCEEEEEECCCCCEE----EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEE
Q ss_conf 899-99977990999987899702----6842578878778599999208999999999789929999778886315999
Q 000700 1189 GQL-AAGFVDGSVRLYDVRTPDML----VCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263 (1344)
Q Consensus 1189 ~~L-vsGs~DGsIrIwDlr~~~~~----v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l 1263 (1344)
+.+ ++.+..+.|..|++...... ...+....+..+....+++..+ |++.++.-..+.|..||.. + +.+..+
T Consensus 160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~--GnlWva~~~~g~V~~~dp~-G-~~~~~i 235 (295)
T d2ghsa1 160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYDTD-G-NHIARY 235 (295)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEECTT-C-CEEEEE
T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCC--CCEEEEEECCCCEEEECCC-C-CEEEEE
T ss_conf 66898515663246764535555324535788416755566632678699--9989532078846885699-9-286686
Q ss_pred ECCCCCEEEEEEC
Q ss_conf 0579986999990
Q 000700 1264 DAHRGSLSALAVH 1276 (1344)
Q Consensus 1264 ~~h~~~ItsLa~s 1276 (1344)
......+++++|-
T Consensus 236 ~lP~~~~T~~~FG 248 (295)
T d2ghsa1 236 EVPGKQTTCPAFI 248 (295)
T ss_dssp ECSCSBEEEEEEE
T ss_pred CCCCCCEEEEEEE
T ss_conf 3899852798982
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.18 E-value=0.00032 Score=42.22 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=43.2
Q ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 01243311688883677889999999995189212278884456999999531799999999888999999999974114
Q 000700 541 HAYFIRFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSMPNDAQTEPLFLQWLCLCLGKLWED 620 (1344)
Q Consensus 541 ~~yf~~~L~~~~~~~~~r~~~afiLa~l~~~~~~gq~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~R~w~~l~Lg~l~~~ 620 (1344)
...++..|.+.+ +..|..++.+|+.+. .......+...|+ |++|.||..++-+||++..
T Consensus 24 ~~~L~~~l~d~~--~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~-------d~~~~VR~~a~~aL~~i~~- 82 (111)
T d1te4a_ 24 FEPLLESLSNED--WRIRGAAAWIIGNFQ-----------DERAVEPLIKLLE-------DDSGFVRSGAARSLEQIGG- 82 (111)
T ss_dssp HHHHHHGGGCSC--HHHHHHHHHHHGGGC-----------SHHHHHHHHHHHH-------HCCTHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHCC-----------HHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHCC-
T ss_conf 999999974998--789999999987610-----------1232799873302-------3033799999999998676-
Q ss_pred CHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 54888840025804667421069997789999999964
Q 000700 621 FTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLGT 658 (1344)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~~ 658 (1344)
+. +...|..+++|++|.||.+++.+|.+
T Consensus 83 -~~---------~~~~L~~ll~d~~~~vr~~A~~aL~t 110 (111)
T d1te4a_ 83 -ER---------VRAAMEKLAETGTGFARKVAVNYLET 110 (111)
T ss_dssp -HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -CC---------HHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf -11---------49999998829989999999999876
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.44 E-value=0.019 Score=29.67 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=120.5
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEEC-C---CEEEEEECCCCC
Q ss_conf 99479--99999997899499998799937888407999999848999986089989999978-9---809998355778
Q 000700 1038 LLQPF--SPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASC-N---GNIRIWKDYDQK 1111 (1344)
Q Consensus 1038 ~fspd--g~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~-D---G~IrIWdi~~~~ 1111 (1344)
..+|+ |+.++..+ +|.|.+.++.+++.. .+..+. +.+....| +|||+.|+-... + ....+|......
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~---~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNL---GVINNARF--FPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSS---SEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCC---CCCCCEEE--CCCCCEEEEEEEECCCCCCEEEEEEEECC
T ss_conf 258887999999990-996899989999879-976699---85267798--78999899998628987722899998259
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC------CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC
Q ss_conf 8505986010235789972235037999359996999988------9819999877896246653499999826999875
Q 000700 1112 DKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE------VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQ 1185 (1344)
Q Consensus 1112 ~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~------Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s 1185 (1344)
+....++.. .+.............|++++..++.... ...+...+..... . ...... . .... +..
T Consensus 78 g~~~~lt~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~--~-~~~~-~~~ 148 (281)
T d1k32a2 78 GEIKRITYF---SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-F-VPLNLG--P-ATHI-LFA 148 (281)
T ss_dssp TEEEECCCC---CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-E-EECCSC--S-CSEE-EEE
T ss_pred CCEEEEEEC---CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCE-E-EEECCC--C-CCEE-EEC
T ss_conf 952886416---88754764443431027988779999713787652024651587760-6-880178--6-5234-646
Q ss_pred CCCCEEEEEECCC-----------EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECC--CCEEEEE
Q ss_conf 9998999997799-----------09999878997026842578878778599999208999999999789--9299997
Q 000700 1186 VHGGQLAAGFVDG-----------SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQA--GDIQFLD 1252 (1344)
Q Consensus 1186 ~dg~~LvsGs~DG-----------sIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~D--G~I~IWD 1252 (1344)
.++..+.....+. ........... ..... . .........+.++ ..+.....+ ..|.++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d 220 (281)
T d1k32a2 149 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIV-D---MSTHVSSPVIVGH---RIYFITDIDGFGQIYSTD 220 (281)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEE-C---CSSCCEEEEEETT---EEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCEEEEECCCCC-EEECC-C---CCCCCCEEEEECC---CCCEECCCCCCCCEEEEE
T ss_conf 99849886204664044420588620444113661-22404-7---7666421331035---320001134552128996
Q ss_pred CCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC
Q ss_conf 788863159990579986999990799989999679909999679926899834
Q 000700 1253 IRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGTIRY 1306 (1344)
Q Consensus 1253 l~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~g~~l~~l~~ 1306 (1344)
+... ....+..+. ......|+|+|..|+.. .++.|.++|+++.....+..
T Consensus 221 ~~g~--~~~~lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 221 LDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp TTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCC
T ss_pred CCCC--CEEEEECCC-CCCCCCCCCCCCEEEEE-ECCEEEEEECCCCCEEEECC
T ss_conf 8999--659810589-86443286798999998-59999999899998788425
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.34 E-value=0.0074 Score=32.54 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=7.0
Q ss_pred HHHHCCCCCHHHHHHHH
Q ss_conf 74210699977899999
Q 000700 637 YVPLLSEPQPEVRASAV 653 (1344)
Q Consensus 637 l~~ll~D~sP~VRaa~v 653 (1344)
+..+++|+.++||.+++
T Consensus 143 L~~L~~D~d~~VR~~aA 159 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVA 159 (233)
T ss_dssp GGGTTTCSCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH
T ss_conf 99883489789999999
|
| >d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Caspase-like superfamily: Caspase-like family: Caspase catalytic domain domain: Caspase-9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.031 Score=28.05 Aligned_cols=151 Identities=10% Similarity=0.025 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHH-HCCC-CCCEEEEEECCCCCCCCCCCCEEEEECC-CC
Q ss_conf 2459999999999999975433461001699988999999985-0258-9950999982789898898864887086-21
Q 000700 142 PQKALETIGKNLSQQYERWQPRARYKVQLDPTVDEVKKLCNTC-RRYA-KGERVLFHYNGHGVPKPTANGEIWLFNK-YI 218 (1344)
Q Consensus 142 ~~~~~~~i~~~l~~~y~~~~~~~~~~~~~~p~~~~~~~~~~~~-r~~~-~~~r~lfhy~ghg~p~pt~~g~i~~~~~-y~ 218 (1344)
+.+=.+.|.+.|+ .+ .-.+....|.+.+++++....+ ++.. ..+.++|.|-|||+.....+....+... -.
T Consensus 44 a~~Da~~l~~~l~----~l--GF~V~~~~nlt~~~~~~~l~~~~~~~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~ 117 (277)
T d1nw9b_ 44 SNIDCEKLRRRFS----SL--HFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVILSHGCQASHLQFPGAVYGTDGC 117 (277)
T ss_dssp HHHHHHHHHHHHH----HT--TEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSC
T ss_pred CHHHHHHHHHHHH----HC--CCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 1999999999998----88--99899951899999999999866631468887999994787644564545761377665
Q ss_pred CCCHHH---------HHHHCCCCEEEEEECCCHHHHHHHHHHHCCC---------------------------CCCCCCC
Q ss_conf 244888---------8743199969999299430689999850026---------------------------8889999
Q 000700 219 PLPISD---------LDSWLKTPSIYVFDCSAAGMIVNAFIELHDW---------------------------GASNYSG 262 (1344)
Q Consensus 219 p~~~~~---------l~~~~~~p~~~v~dc~~ag~~~~~~~~~~~~---------------------------~~~~~~~ 262 (1344)
++++.+ +..-.+.|.+||+||...|.+-......... ......+
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 197 (277)
T d1nw9b_ 118 PVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLP 197 (277)
T ss_dssp EEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 00278899876776635414573799986246876566631135675434444443444321000123443334410157
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHH
Q ss_conf 9765079985288687999999990344311403699
Q 000700 263 STRDCILLAACEAHETLPQSEEFPADVFTSCLTTPIT 299 (1344)
Q Consensus 263 ~~~~~~~~~ac~~~e~lp~~~~lp~D~ftscl~tP~~ 299 (1344)
...|.+...||.++...-.+++ .--.||..|..-++
T Consensus 198 ~~~d~~i~~st~~g~~a~~~~~-~gS~f~~~L~~~l~ 233 (277)
T d1nw9b_ 198 TPSDIFVSYSTFPGFVSWRDPK-SGSWYVETLDDIFE 233 (277)
T ss_dssp CSCSEEEEEECCCCBSSTTCTT-SCBHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHHHH
T ss_conf 7665069971565348744898-89899999999999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.33 E-value=0.054 Score=26.39 Aligned_cols=223 Identities=8% Similarity=0.064 Sum_probs=134.8
Q ss_pred EEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 899998608-9989999978980999835577885059860102357899722350379993599969999889819999
Q 000700 1080 SKLCLVNEL-DVSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEVSSIMLW 1158 (1344)
Q Consensus 1080 tsL~f~ns~-d~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~Dg~I~IW 1158 (1344)
.+..| .+ ++.+..+--..+.|..|+..+ +..... .+ ...+.+ +.+..+ +.+++++.+| +..+
T Consensus 21 Egp~w--d~~~~~l~wvDi~~~~I~r~d~~~--g~~~~~----~~---~~~~~~----i~~~~d-g~l~va~~~g-l~~~ 83 (295)
T d2ghsa1 21 EGPTF--DPASGTAWWFNILERELHELHLAS--GRKTVH----AL---PFMGSA----LAKISD-SKQLIASDDG-LFLR 83 (295)
T ss_dssp EEEEE--ETTTTEEEEEEGGGTEEEEEETTT--TEEEEE----EC---SSCEEE----EEEEET-TEEEEEETTE-EEEE
T ss_pred ECCEE--ECCCCEEEEEECCCCEEEEEECCC--CEEEEE----EC---CCCCEE----EEEECC-CCEEEEEECC-CEEE
T ss_conf 58759--899999999987899999998998--959999----89---998179----899659-9889997376-3895
Q ss_pred ECCCCCEEEEEECCC---CCCCEEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 877896246653499---999826999875999899999779----9099998789970268425788787785999992
Q 000700 1159 DLEKEQQMVNPIPSS---SDCSISALTASQVHGGQLAAGFVD----GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQ 1231 (1344)
Q Consensus 1159 Dl~s~~~~v~~i~~~---~~~~Vtsl~~~s~dg~~LvsGs~D----GsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~s 1231 (1344)
|..+++ ........ ....+..+ ...++|++.++...+ +.-.+|....++ ........ .....+.|+
T Consensus 84 d~~tg~-~~~l~~~~~~~~~~~~nd~-~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~~----~~~Ng~~~s 156 (295)
T d2ghsa1 84 DTATGV-LTLHAELESDLPGNRSNDG-RMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFADI----SIPNSICFS 156 (295)
T ss_dssp ETTTCC-EEEEECSSTTCTTEEEEEE-EECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEEE----SSEEEEEEC
T ss_pred ECCCCE-EEEEEEEECCCCCCCCEEE-EECCCCCEEEEECCCCCCCCCEEEEEECCCC-EEEEEECC----CCCCEEEEC
T ss_conf 046451-3578664047876610135-7979999988742643133330576622996-89986506----876402465
Q ss_pred CCCCCCEE-EEEECCCCEEEEECCCCC-----CCE--EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 08999999-999789929999778886-----315--9990579986999990799989999679909999679926899
Q 000700 1232 PGLDPAKI-VSASQAGDIQFLDIRNHK-----DAY--LTIDAHRGSLSALAVHRHAPIIASGSAKQLIKVFSLEGEQLGT 1303 (1344)
Q Consensus 1232 p~~~g~~L-vsgs~DG~I~IWDl~~~~-----~~i--~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~Iwd~~g~~l~~ 1303 (1344)
++ ++.+ ++.+..+.|..+++.... ... ..+....+....+++..+|.+.++.-..+.|..|+.+|+.+..
T Consensus 157 ~d--~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~ 234 (295)
T d2ghsa1 157 PD--GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIAR 234 (295)
T ss_dssp TT--SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEE
T ss_pred CC--CCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECCCCCEEEE
T ss_conf 87--7668985156632467645355553245357884167555666326786999989532078846885699928668
Q ss_pred EECCCCCCCCCCCCCEEEEEEE-CCCCEE-EEEEC
Q ss_conf 8345786444567873899993-699789-99988
Q 000700 1304 IRYHHPSFMAQKIGSVNCLTFH-PYQVLL-AAGSA 1336 (1344)
Q Consensus 1304 l~~~h~~f~~~~~~~V~slafs-pdg~~L-asgs~ 1336 (1344)
+.. .. ..+++++|- ++...| +|.+.
T Consensus 235 i~l-P~-------~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 235 YEV-PG-------KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEC-SC-------SBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CC-------CCEEEEEEECCCCCEEEEEECC
T ss_conf 638-99-------8527989828999999999787
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.021 Score=29.24 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=64.7
Q ss_pred HHCHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 44569999995317999---999998889999999999741145488884002580466742106999778999999996
Q 000700 581 EAGLIHVCLKHLQGSMP---NDAQTEPLFLQWLCLCLGKLWEDFTEAQTIGRRADAPAIYVPLLSEPQPEVRASAVFSLG 657 (1344)
Q Consensus 581 ~~~~~~~~~~~l~~~~~---~~~~~~p~~R~w~~l~Lg~l~~~~~~~~~~~~~~~~~~~l~~ll~D~sP~VRaa~v~aL~ 657 (1344)
+..++.+++.+|....+ .+...+|.+-+=+|+=+|.|+..+|++|.+.-+.++-+.+..+++++.|+||.+|+.|++
T Consensus 390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 469 (477)
T d1ho8a_ 390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 469 (477)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 54899999999862044555545788233313350077999978533679988283999998864999799999999999
Q ss_pred HHCC
Q ss_conf 4003
Q 000700 658 TLLD 661 (1344)
Q Consensus 658 ~~i~ 661 (1344)
.++.
T Consensus 470 klm~ 473 (477)
T d1ho8a_ 470 AIIG 473 (477)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9998
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.98 E-value=0.11 Score=24.16 Aligned_cols=235 Identities=14% Similarity=0.248 Sum_probs=130.4
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 17999947999999997899499998799937888407999999848999986089989999978980999835577885
Q 000700 1034 TKTALLQPFSPIVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVASCNGNIRIWKDYDQKDK 1113 (1344)
Q Consensus 1034 I~si~fspdg~~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs~DG~IrIWdi~~~~~~ 1113 (1344)
-.+.-.+|..+.||.-+ ...+.|+|+++.+.++.+.-.. .|.--.|+ +.+.|+..+.. .|.-|+++... .
T Consensus 65 AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e----~VvfWkWi---s~~~L~lVT~t-aVYHW~~~g~s-~ 134 (327)
T d1utca2 65 ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD----DVTFWKWI---SLNTVALVTDN-AVYHWSMEGES-Q 134 (327)
T ss_dssp CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS----CCCEEEES---SSSEEEEECSS-EEEEEESSSSC-C
T ss_pred HHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECCC----CCEEEEEC---CCCEEEEECCC-CEEEECCCCCC-C
T ss_conf 16653088875799962-8868998446822111587688----85799944---79889999188-16997356999-8
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE---C----CCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECC
Q ss_conf 0598601023578997223503799935999699998---8----98199998778962466534999998269998759
Q 000700 1114 QKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG---E----VSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQV 1186 (1344)
Q Consensus 1114 ~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag---~----Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~ 1186 (1344)
+..+ +..|..-..+-.....-+++.+.++..| . .|.+.+|..++.. -+.+.+|... ...+ ..
T Consensus 135 P~k~-----fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~-F~~~---~~ 203 (327)
T d1utca2 135 PVKM-----FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAAS-FAQF---KM 203 (327)
T ss_dssp CEEE-----EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEE-EEEE---CC
T ss_pred CHHH-----HHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCCCEEEE-EEEE---EC
T ss_conf 5266-----2321012486389989899998899995713788305888899802286--7523203465-6888---70
Q ss_pred CC-----CEEEEE---ECCCEEEEEECCCCCE--------EEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 99-----899999---7799099998789970--------2684257887877859999920899999999978992999
Q 000700 1187 HG-----GQLAAG---FVDGSVRLYDVRTPDM--------LVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQF 1250 (1344)
Q Consensus 1187 dg-----~~LvsG---s~DGsIrIwDlr~~~~--------~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~I 1250 (1344)
+| .+|+.+ ...+.+.+.++..... .+..+-......+-..++..++. ...++.-+.-|.+.+
T Consensus 204 ~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k--ygiiyviTK~G~i~l 281 (327)
T d1utca2 204 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK--HDVVFLITKYGYIHL 281 (327)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT--TTEEEEEETTSEEEE
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC--CCEEEEEECCCEEEE
T ss_conf 799887309999987898747999986887557888753268877796346884779996433--799999966758999
Q ss_pred EECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 977888631599905799869999907999899996799099
Q 000700 1251 LDIRNHKDAYLTIDAHRGSLSALAVHRHAPIIASGSAKQLIK 1292 (1344)
Q Consensus 1251 WDl~~~~~~i~~l~~h~~~ItsLa~sp~g~~LasgS~Dg~I~ 1292 (1344)
||+.++ .++..-+.....|-..+-+.+..-+++...+|.|.
T Consensus 282 yDleTg-t~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 282 YDLETG-TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EETTTC-CEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EECCCC-CEEEEEECCCCCEEEECCCCCCCEEEEECCCCEEE
T ss_conf 975666-28999404788448962678886089987897699
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.46 E-value=0.14 Score=23.54 Aligned_cols=248 Identities=8% Similarity=0.051 Sum_probs=133.0
Q ss_pred CEEEEEECCCCEEEEECCCCCE-----EEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEEECCCCCCCEEEE
Q ss_conf 9999997899499998799937-----8884079999998489999860899899999-789809998355778850598
Q 000700 1044 PIVVAADENERIKIWNYEEDTL-----LNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIWKDYDQKDKQKLV 1117 (1344)
Q Consensus 1044 ~~Latgs~dg~I~IWd~~tg~~-----i~~l~~h~~~~~~ItsL~f~ns~d~~~Litg-s~DG~IrIWdi~~~~~~~~lv 1117 (1344)
.+|+.+. .+.|+-.+++.... ...+..+. ..+..++| ....+.++-. ..++.|+..++.. +..+.+
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~---~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g--~~~~~v 73 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPA---KVIIGLAF--DCVDKVVYWTDISEPSIGRASLHG--GEPTTI 73 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEE---EEEEEEEE--ETTTTEEEEEETTTTEEEEEESSS--CCCEEE
T ss_pred CEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCC---CCEEEEEE--EECCCEEEEEECCCCEEEEEECCC--CCCEEE
T ss_conf 8999948-982999978886655445310012687---75799999--858999999989999199997665--872898
Q ss_pred EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 601023578997223503799935999699998-8981999987789624665349999982699987599989999977
Q 000700 1118 TAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGFV 1196 (1344)
Q Consensus 1118 ~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs~ 1196 (1344)
+........+ +++...++.++.+. ..+.|.+.++.... +...+..... ....++..+..+.++.+-..
T Consensus 74 -----~~~~~~~p~~----iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~-~p~~l~vdp~~g~ly~t~~~ 142 (263)
T d1npea_ 74 -----IRQDLGSPEG----IALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLV-NPRGIVTDPVRGNLYWTDWN 142 (263)
T ss_dssp -----ECTTCCCEEE----EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCS-SEEEEEEETTTTEEEEEECC
T ss_pred -----EEECCCCCCE----EEEECCCCEEEEECCCCCEEEEEECCCCE-EEEEECCCCC-CCCEEEEECCCCCEEEEECC
T ss_conf -----8701264207----99963688688842678979988058816-7777125666-87279992566927995348
Q ss_pred CC--EEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEE-ECCCCEEEEECCCCCCCEEEEECCCCCEEEE
Q ss_conf 99--09999878997026842578878778599999208999999999-7899299997788863159990579986999
Q 000700 1197 DG--SVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTIDAHRGSLSAL 1273 (1344)
Q Consensus 1197 DG--sIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsg-s~DG~I~IWDl~~~~~~i~~l~~h~~~ItsL 1273 (1344)
.+ .|.-.++.... ....... .-....++++.+. ++.|+.. ...+.|...|+... .....+.+. ....++
T Consensus 143 ~~~~~I~r~~~dG~~-~~~i~~~---~~~~P~glaiD~~--~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~-~~P~~l 214 (263)
T d1npea_ 143 RDNPKIETSHMDGTN-RRILAQD---NLGLPNGLTFDAF--SSQLCWVDAGTHRAECLNPAQP-GRRKVLEGL-QYPFAV 214 (263)
T ss_dssp SSSCEEEEEETTSCC-CEEEECT---TCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTEE-EEEEEEECC-CSEEEE
T ss_pred CCCCEEEEECCCCCC-CEEEEEE---CCCCCCEEEEEEC--CCEEEEEECCCCEEEEEECCCC-CEEEEECCC-CCCEEE
T ss_conf 997689996678997-2365530---3555530799504--7589999289999999999999-769998899-986899
Q ss_pred EECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCCCCCCCCCEEEEEEEC
Q ss_conf 99079998999967990999967-992689983457864445678738999936
Q 000700 1274 AVHRHAPIIASGSAKQLIKVFSL-EGEQLGTIRYHHPSFMAQKIGSVNCLTFHP 1326 (1344)
Q Consensus 1274 a~sp~g~~LasgS~Dg~I~Iwd~-~g~~l~~l~~~h~~f~~~~~~~V~slafsp 1326 (1344)
++. .+.++.+-...+.|...|. .++.+..+.. .. .....+++..+
T Consensus 215 av~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~-~~------~~~~~gi~v~~ 260 (263)
T d1npea_ 215 TSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HK------QTRLYGITIAL 260 (263)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC-SS------CCCCCCEEEEC
T ss_pred EEE-CCEEEEEECCCCEEEEEECCCCCCCEEECC-CC------CCCCCEEEEEC
T ss_conf 999-999999999999799998989951069898-88------99856589838
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.43 E-value=0.041 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=12.2
Q ss_pred HHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 6742106999778999999996
Q 000700 636 IYVPLLSEPQPEVRASAVFSLG 657 (1344)
Q Consensus 636 ~l~~ll~D~sP~VRaa~v~aL~ 657 (1344)
.+..+++|+.|+||.+++-.|+
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L~ 187 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRLR 187 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHCC
T ss_pred HHHHHCCCCCHHHHHHHHHHCC
T ss_conf 9998705998899999998458
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.30 E-value=0.14 Score=23.37 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=116.0
Q ss_pred CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEE-EEECCCEEEEEECCCC
Q ss_conf 817999947999999997-89949999879993788840799999984899998608998999-9978980999835577
Q 000700 1033 GTKTALLQPFSPIVVAAD-ENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLL-VASCNGNIRIWKDYDQ 1110 (1344)
Q Consensus 1033 ~I~si~fspdg~~Latgs-~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Li-tgs~DG~IrIWdi~~~ 1110 (1344)
.+..++|+..++.+..++ .++.|+..+++.+.....+.... ..+.++++ ..-++.|+ +-...+.|.+.+...
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~---~~p~~iAv--D~~~~~lY~~d~~~~~I~~~~~dg- 110 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---GSPEGIAL--DHLGRTIFWTDSQLDRIEVAKMDG- 110 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---CCEEEEEE--ETTTTEEEEEETTTTEEEEEETTS-
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECC---CCCCEEEE--ECCCCEEEEECCCCCEEEEEECCC-
T ss_conf 579999985899999998999919999766587289887012---64207999--636886888426789799880588-
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC---CEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 885059860102357899722350379993599969999889---81999987789624665349999982699987599
Q 000700 1111 KDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV---SSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVH 1187 (1344)
Q Consensus 1111 ~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~D---g~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~d 1187 (1344)
...+.+ .......... ++..+..+.++..... +.|..-++.... ........-. ...+++....+
T Consensus 111 -~~~~~l-----~~~~l~~p~~----l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~-~P~glaiD~~~ 178 (263)
T d1npea_ 111 -TQRRVL-----FDTGLVNPRG----IVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLG-LPNGLTFDAFS 178 (263)
T ss_dssp -CSCEEE-----ECSSCSSEEE----EEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCS-CEEEEEEETTT
T ss_pred -CEEEEE-----ECCCCCCCCE----EEEECCCCCEEEEECCCCCCEEEEECCCCCC-CEEEEEECCC-CCCEEEEEECC
T ss_conf -167777-----1256668727----9992566927995348997689996678997-2365530355-55307995047
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEE-CC
Q ss_conf 98999997799099998789970268425788787785999992089999999997899299997788863159990-57
Q 000700 1188 GGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTID-AH 1266 (1344)
Q Consensus 1188 g~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~-~h 1266 (1344)
+.+.++-...+.|...|..... ........ ....++++. + +....+-...+.|...|...+ +....+. ..
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~----~~P~~lav~-~--~~lYwtd~~~~~I~~~~~~~g-~~~~~~~~~~ 249 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPG-RRKVLEGL----QYPFAVTSY-G--KNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHK 249 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEE-EEEEEECC----CSEEEEEEE-T--TEEEEEETTTTEEEEEETTTT-EEEEEECCSS
T ss_pred CEEEEEECCCCEEEEEECCCCC-EEEEECCC----CCCEEEEEE-C--CEEEEEECCCCEEEEEECCCC-CCCEEECCCC
T ss_conf 5899992899999999999997-69998899----986899999-9--999999999997999989899-5106989888
Q ss_pred CCCEEEEEECC
Q ss_conf 99869999907
Q 000700 1267 RGSLSALAVHR 1277 (1344)
Q Consensus 1267 ~~~ItsLa~sp 1277 (1344)
.....++.+.+
T Consensus 250 ~~~~~gi~v~~ 260 (263)
T d1npea_ 250 QTRLYGITIAL 260 (263)
T ss_dssp CCCCCCEEEEC
T ss_pred CCCCCEEEEEC
T ss_conf 99856589838
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.07 E-value=0.15 Score=23.14 Aligned_cols=292 Identities=8% Similarity=0.074 Sum_probs=136.7
Q ss_pred CCCCCCCCC---CCEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEEC
Q ss_conf 111126789---9817999947999999997899-----------49999879993788840799999984899998608
Q 000700 1023 IACWDTRFE---KGTKTALLQPFSPIVVAADENE-----------RIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNEL 1088 (1344)
Q Consensus 1023 i~~Wd~~~~---~~I~si~fspdg~~Latgs~dg-----------~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~ 1088 (1344)
...|..... .+........+++.++.|+.+. .+.+||..+++....-....+.........+ ..
T Consensus 8 ~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~--~~ 85 (387)
T d1k3ia3 8 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISM--DG 85 (387)
T ss_dssp SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEE--CT
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEE--EC
T ss_conf 8716786889861017899925999999984057666788776068999988889686667789874452568999--46
Q ss_pred CCCEEEEEECC-CEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEECC------CEEEEEECC
Q ss_conf 99899999789-80999835577885059860102357899722350379993599969999889------819999877
Q 000700 1089 DVSLLLVASCN-GNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGEV------SSIMLWDLE 1161 (1344)
Q Consensus 1089 d~~~Litgs~D-G~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~D------g~I~IWDl~ 1161 (1344)
++.+++.|+.+ ..+.+||..+ ..... .......-.. . ......++..++.+|.+ ..+.+||..
T Consensus 86 ~g~i~v~Gg~~~~~~~~yd~~~--~~w~~------~~~~~~~r~~-~-~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 86 NGQIVVTGGNDAKKTSLYDSSS--DSWIP------GPDMQVARGY-Q-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp TSCEEEECSSSTTCEEEEEGGG--TEEEE------CCCCSSCCSS-C-EEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CCCEEEEECCCCCCEEEECCCC--CCCCC------CCCCCCCCCC-C-CEEEECCCCEEEECCCCCCCCCCCEEEEECCC
T ss_conf 8868986368886216756755--74421------5656642101-3-03553178266521366333543205663488
Q ss_pred CCCEEEEEECCC---------------CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEC--CCCCC--C
Q ss_conf 896246653499---------------9998269998759998999997799099998789970268425--78878--7
Q 000700 1162 KEQQMVNPIPSS---------------SDCSISALTASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTR--PHTQQ--V 1222 (1344)
Q Consensus 1162 s~~~~v~~i~~~---------------~~~~Vtsl~~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~--~~~~h--~ 1222 (1344)
+.+ -..+... .+. -..+ +...++..++.|..++.+..+|..+..-...... ....+ .
T Consensus 156 ~~~--W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (387)
T d1k3ia3 156 SKT--WTSLPNAKVNPMLTADKQGLYRSDN-HAWL-FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 231 (387)
T ss_dssp TTE--EEEETTSCSGGGCCCCTTGGGTTTC-SCCE-EECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred CCC--EEECCCCCCCCCCCCCCCCEEECCC-EEEE-EEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 895--5115887644311346651365042-2699-97079877874686774781486667173166556676657632
Q ss_pred CCEEEEEEECCCCCCEEEEEECCC--------CEEEEECCCCCCCEEEEEC-----CCCCEEEEEECCCCCEEEEEECC-
Q ss_conf 785999992089999999997899--------2999977888631599905-----79986999990799989999679-
Q 000700 1223 ERVVGISFQPGLDPAKIVSASQAG--------DIQFLDIRNHKDAYLTIDA-----HRGSLSALAVHRHAPIIASGSAK- 1288 (1344)
Q Consensus 1223 ~~I~sI~~sp~~~g~~Lvsgs~DG--------~I~IWDl~~~~~~i~~l~~-----h~~~ItsLa~sp~g~~LasgS~D- 1288 (1344)
..-.++.+... +++.++.|+... ...+.+............. ....-.+....+++++++.|+.+
T Consensus 232 ~~~~~~~~~~~-~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~ 310 (387)
T d1k3ia3 232 MCGNAVMYDAV-KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 310 (387)
T ss_dssp BTCEEEEEETT-TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred CCCCEEEEECC-CCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCC
T ss_conf 22637886135-88247887536788775210000011111356788406036656654343356605874999888456
Q ss_pred ----------CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf ----------909999679926899834578644456787389999369978999988
Q 000700 1289 ----------QLIKVFSLEGEQLGTIRYHHPSFMAQKIGSVNCLTFHPYQVLLAAGSA 1336 (1344)
Q Consensus 1289 ----------g~I~Iwd~~g~~l~~l~~~h~~f~~~~~~~V~slafspdg~~Lasgs~ 1336 (1344)
..+.+||.....-..+.. .. ..+.. -......+++++|+.|+.
T Consensus 311 ~~~~~~~~~~~~ve~Ydp~~~~W~~~~~-~~---~~R~~-Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 311 GIPFEDSTPVFTPEIYVPEQDTFYKQNP-NS---IVRVY-HSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEEECCC-CS---SCCCT-TEEEEECTTSCEEEEECC
T ss_pred CCCCCCCCEECEEEEEECCCCEEEECCC-CC---CCCCC-EEEEEECCCCEEEEEECC
T ss_conf 7668899470107989799991887889-99---75531-279999889999999698
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.15 E-value=0.25 Score=21.60 Aligned_cols=61 Identities=7% Similarity=0.019 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 997789999999964003476777899889988773899999999999997630589952399999999999961
Q 000700 644 PQPEVRASAVFSLGTLLDIGFDSCRDGVEGDEECDDDEKIRAEISIIRSLLTVVSDGSPLVRAEVAVALARFAFG 718 (1344)
Q Consensus 644 ~sP~VRaa~v~aL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ll~~~~D~sp~VR~e~~~~l~~~~~~ 718 (1344)
..|.|=|-|++=+|.|+..++ .....-.....=..++.+.++..|.||+|++.+++.++..
T Consensus 414 ~D~~~lAVAc~DiGefvr~~P--------------~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 414 QEKIIIQVALNDITHVVELLP--------------ESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------THHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEHHHHHHHHHHHHCC--------------CHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 882333133500779999785--------------3367998828399999886499979999999999999985
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=89.81 E-value=0.33 Score=20.81 Aligned_cols=89 Identities=6% Similarity=-0.006 Sum_probs=37.1
Q ss_pred CCEEEEEECCCEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEC-C-----CEEEEEECCCC
Q ss_conf 98999997898099983557788505986010235789972235037999359996999988-9-----81999987789
Q 000700 1090 VSLLLVASCNGNIRIWKDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASGE-V-----SSIMLWDLEKE 1163 (1344)
Q Consensus 1090 ~~~Litgs~DG~IrIWdi~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag~-D-----g~I~IWDl~s~ 1163 (1344)
|+.++-.+ +|.|.+.++.. ++.+. +..+...... ..|+|++..|+.... + ..|.+++...+
T Consensus 12 G~~v~f~~-~~dl~~~d~~~--g~~~~------Lt~~~~~~~~----p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 12 GDRIIFVC-CDDLWEHDLKS--GSTRK------IVSNLGVINN----ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp TTEEEEEE-TTEEEEEETTT--CCEEE------EECSSSEEEE----EEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CCEEEEEE-CCCEEEEECCC--CCEEE------EECCCCCCCC----EEECCCCCEEEEEEEECCCCCCEEEEEEEECCC
T ss_conf 99999990-99689998999--98799------7669985267----798789998999986289877228999982599
Q ss_pred CEEEEEECCCC------CCCEEEEEEECCCCCEEEEE
Q ss_conf 62466534999------99826999875999899999
Q 000700 1164 QQMVNPIPSSS------DCSISALTASQVHGGQLAAG 1194 (1344)
Q Consensus 1164 ~~~v~~i~~~~------~~~Vtsl~~~s~dg~~LvsG 1194 (1344)
. .. .+.... ....... .++++++.++..
T Consensus 79 ~-~~-~lt~~~~~~~~~~~~~~~~-~~spdg~~l~~~ 112 (281)
T d1k32a2 79 E-IK-RITYFSGKSTGRRMFTDVA-GFDPDGNLIIST 112 (281)
T ss_dssp E-EE-ECCCCCEEEETTEECSEEE-EECTTCCEEEEE
T ss_pred C-EE-EEEECCCCCCCCCCCCCCC-CCCCCCCEEEEE
T ss_conf 5-28-8641688754764443431-027988779999
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.55 E-value=0.4 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=12.8
Q ss_pred CEEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 9899996799099996-79926899834
Q 000700 1280 PIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1280 ~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
.++.+|+.|+.++-+| .+|+.+-++..
T Consensus 476 glVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 476 GLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEEEC
T ss_conf 9799977899699999999868789989
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.41 Score=20.09 Aligned_cols=236 Identities=10% Similarity=0.086 Sum_probs=135.7
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEE-CCCEEEEEECCCCCC--CEEEEEEEE
Q ss_conf 99999789949999879993788840799999984899998608998999997-898099983557788--505986010
Q 000700 1045 IVVAADENERIKIWNYEEDTLLNSFDNHDFPDKGISKLCLVNELDVSLLLVAS-CNGNIRIWKDYDQKD--KQKLVTAFS 1121 (1344)
Q Consensus 1045 ~Latgs~dg~I~IWd~~tg~~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litgs-~DG~IrIWdi~~~~~--~~~lv~~~~ 1121 (1344)
+|+.+. ...|+..++++.+....+. .. ..+.++.| ....+.++-.. ..+.|.-.++..... ..+.+
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~---~~~~~id~--d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~---- 71 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NL---RNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---- 71 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SC---SSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEE----
T ss_pred EEEEEC-CCEEEEEECCCCCCEEEEC-CC---CCEEEEEE--EECCCEEEEEECCCCEEEEEEECCCCCCCCEEEE----
T ss_conf 999978-7718999899985266417-99---85599999--8089999999997997999993578887614899----
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCEEEEEE-CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEE-CCCE
Q ss_conf 23578997223503799935999699998-898199998778962466534999998269998759998999997-7990
Q 000700 1122 SIQGHKPGVRCSNVVVDWQQQSGYLYASG-EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTASQVHGGQLAAGF-VDGS 1199 (1344)
Q Consensus 1122 ~l~~h~~~V~s~~~~v~ws~~~~~Llaag-~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~~s~dg~~LvsGs-~DGs 1199 (1344)
+........+ +++...++.++.+. ..+.|.+.++.... ....+...... ...+...+..+.++++.. ..+.
T Consensus 72 -~~~~~~~p~g----lAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~-P~~l~vd~~~g~ly~~~~~~~~~ 144 (266)
T d1ijqa1 72 -ISRDIQAPDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSK-PRAIVVDPVHGFMYWTDWGTPAK 144 (266)
T ss_dssp -ECSSCSCCCE----EEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCC-EEEEEEETTTTEEEEEECSSSCE
T ss_pred -EECCCCCCCE----EEEEECCCEEEEEECCCCEEEEEECCCCE-EEEEECCCCCC-CCEEEEECCCCEEEEECCCCCCC
T ss_conf -8489998546----89864265289995489999857648953-78887279988-33699980039488712699730
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEE-ECCCCEEEEECCCCCCCEEEEECC--CCCEEEEEEC
Q ss_conf 9999878997026842578878778599999208999999999-789929999778886315999057--9986999990
Q 000700 1200 VRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSA-SQAGDIQFLDIRNHKDAYLTIDAH--RGSLSALAVH 1276 (1344)
Q Consensus 1200 IrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsg-s~DG~I~IWDl~~~~~~i~~l~~h--~~~ItsLa~s 1276 (1344)
|.-.++.... ....... .-....++++.+. +..|+.+ ...+.|...++... ......... .....++++.
T Consensus 145 I~r~~~dGs~-~~~l~~~---~~~~p~gl~iD~~--~~~lYw~d~~~~~I~~~~~dG~-~~~~~~~~~~~~~~p~~lav~ 217 (266)
T d1ijqa1 145 IKKGGLNGVD-IYSLVTE---NIQWPNGITLDLL--SGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF 217 (266)
T ss_dssp EEEEETTSCC-EEEEECS---SCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE
T ss_pred EEEECCCCCC-EECCCCC---CCCEEEEEEEECC--CCEEEEECCCCCEEEEEECCCC-CEEEEEECCCCCCCCEEEEEE
T ss_conf 2686368883-4412004---5320169986133--5699995289679999989999-779999389855664799998
Q ss_pred CCCCEEEEEECCCEEEEEE-CCCCEEEEEEC
Q ss_conf 7999899996799099996-79926899834
Q 000700 1277 RHAPIIASGSAKQLIKVFS-LEGEQLGTIRY 1306 (1344)
Q Consensus 1277 p~g~~LasgS~Dg~I~Iwd-~~g~~l~~l~~ 1306 (1344)
. +.++.+-..++.|...+ .++.....+..
T Consensus 218 ~-~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 218 E-DKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp T-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred C-CEEEEEECCCCEEEEEECCCCCCEEEEEC
T ss_conf 9-99999989999699999989961599776
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.73 E-value=0.5 Score=19.47 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=66.8
Q ss_pred EEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEE-EECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 9993599969999889819999877896246653499999826999-875999899999779909999878997026842
Q 000700 1137 VDWQQQSGYLYASGEVSSIMLWDLEKEQQMVNPIPSSSDCSISALT-ASQVHGGQLAAGFVDGSVRLYDVRTPDMLVCST 1215 (1344)
Q Consensus 1137 v~ws~~~~~Llaag~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~-~~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~ 1215 (1344)
.+++|..+.+++...+............ ..........+. ...+.. ......|.+.-+|..+++...+..
T Consensus 391 ~a~dP~~~~~yv~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~G~l~AiD~~TG~~~W~~~ 461 (571)
T d2ad6a1 391 DSYDPESRTLYAGLNHICMDWEPFMLPY------RAGQFFVGATLAMYPGPNG---PTKKEMGQIRAFDLTTGKAKWTKW 461 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCC------CTTSCCCCEEEEEEECTTS---TTSCCCEEEEEECTTTCCEEEEEE
T ss_pred CEECCCCCEEEEECCCCCCCCCCCCCCC------CCCCCCCCCCEEECCCCCC---CCCCCCCCEEEECCCCCCEEEECC
T ss_conf 2077888628976553443343002456------6775321563033146677---666775617885367784642767
Q ss_pred CCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCC-CEEEEEECCCCC-EEEEEE
Q ss_conf 57887877859999920899999999978992999977888631599905799-869999907999-899996
Q 000700 1216 RPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDAHRG-SLSALAVHRHAP-IIASGS 1286 (1344)
Q Consensus 1216 ~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~h~~-~ItsLa~sp~g~-~LasgS 1286 (1344)
.......+.+ .-. +.+++.|+.||.++-+|.+++ +.+-+++.... .-.-+.+..+|+ ++++..
T Consensus 462 ~~~~~~~g~l-----~Ta--gglVf~G~~dg~l~A~Da~tG-e~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 462 EKFAAWGGTL-----YTK--GGLVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp ESSCCCSBCE-----EET--TTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCEE-----EEC--CCEEEEECCCCEEEEEECCCC-CEEEEEECCCCCEECCEEEEECCEEEEEEEE
T ss_conf 8999875605-----966--997999778996999999998-6878998999965156489889999999990
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=0.58 Score=19.04 Aligned_cols=211 Identities=9% Similarity=0.018 Sum_probs=107.5
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCC----EEEEEECCCCCCCCEEEEEEEEECCCCEEEEE-ECCCEEEEE
Q ss_conf 9817999947999999997-89949999879993----78884079999998489999860899899999-789809998
Q 000700 1032 KGTKTALLQPFSPIVVAAD-ENERIKIWNYEEDT----LLNSFDNHDFPDKGISKLCLVNELDVSLLLVA-SCNGNIRIW 1105 (1344)
Q Consensus 1032 ~~I~si~fspdg~~Latgs-~dg~I~IWd~~tg~----~i~~l~~h~~~~~~ItsL~f~ns~d~~~Litg-s~DG~IrIW 1105 (1344)
..+..+.|++.++.|.-++ ..+.|...+++... ....+.... ..+.++++ ...++.|+.+ ...+.|.+.
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~---~~p~glAv--D~~~~~lY~~d~~~~~I~v~ 104 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---QAPDGLAV--DWIHSNIYWTDSVLGTVSVA 104 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---SCCCEEEE--ETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCC---CCCCEEEE--EECCCEEEEEECCCCEEEEE
T ss_conf 85599999808999999999799799999357888761489984899---98546898--64265289995489999857
Q ss_pred ECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 355778850598601023578997223503799935999699998--898199998778962466534999998269998
Q 000700 1106 KDYDQKDKQKLVTAFSSIQGHKPGVRCSNVVVDWQQQSGYLYASG--EVSSIMLWDLEKEQQMVNPIPSSSDCSISALTA 1183 (1344)
Q Consensus 1106 di~~~~~~~~lv~~~~~l~~h~~~V~s~~~~v~ws~~~~~Llaag--~Dg~I~IWDl~s~~~~v~~i~~~~~~~Vtsl~~ 1183 (1344)
+... ...... +......... ++..+..+.++.+. ..+.|...++.... ........-. ...+++.
T Consensus 105 ~~~g--~~~~~~-----~~~~~~~P~~----l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~-~p~gl~i 171 (266)
T d1ijqa1 105 DTKG--VKRKTL-----FRENGSKPRA----IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQ-WPNGITL 171 (266)
T ss_dssp ETTS--SSEEEE-----EECTTCCEEE----EEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCS-CEEEEEE
T ss_pred ECCC--CEEEEE-----ECCCCCCCCE----EEEECCCCEEEEECCCCCCCEEEECCCCCC-EECCCCCCCC-EEEEEEE
T ss_conf 6489--537888-----7279988336----999800394887126997302686368883-4412004532-0169986
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEE
Q ss_conf 75999899999779909999878997026842578878778599999208999999999789929999778886315999
Q 000700 1184 SQVHGGQLAAGFVDGSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTI 1263 (1344)
Q Consensus 1184 ~s~dg~~LvsGs~DGsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l 1263 (1344)
....+.+.++-...+.|...|+..... ....... .......++++.. +..+.+-..++.|...+..++ .....+
T Consensus 172 D~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~-~~~~~p~~lav~~---~~ly~td~~~~~I~~~~~~~g-~~~~~~ 245 (266)
T d1ijqa1 172 DLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE-KRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTG-SDVNLL 245 (266)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECT-TTTSSEEEEEEET---TEEEEEETTTTEEEEEETTTC-CCCEEE
T ss_pred ECCCCEEEEECCCCCEEEEEECCCCCE-EEEEECC-CCCCCCEEEEEEC---CEEEEEECCCCEEEEEECCCC-CCEEEE
T ss_conf 133569999528967999998999977-9999389-8556647999989---999999899996999999899-615997
Q ss_pred ECC
Q ss_conf 057
Q 000700 1264 DAH 1266 (1344)
Q Consensus 1264 ~~h 1266 (1344)
...
T Consensus 246 ~~~ 248 (266)
T d1ijqa1 246 AEN 248 (266)
T ss_dssp ECS
T ss_pred ECC
T ss_conf 768
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=81.83 E-value=0.8 Score=18.03 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=31.4
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCEEEEEC
Q ss_conf 90999987899702684257887877859999920899999999978992999977888631599905
Q 000700 1198 GSVRLYDVRTPDMLVCSTRPHTQQVERVVGISFQPGLDPAKIVSASQAGDIQFLDIRNHKDAYLTIDA 1265 (1344)
Q Consensus 1198 GsIrIwDlr~~~~~v~~~~~~~~h~~~I~sI~~sp~~~g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~~ 1265 (1344)
|.+.-||..+++...+.........+.+ ... +.+++.|+.||.++-+|.+++ +.+-+++.
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~l-----sTa--gglVF~G~~Dg~l~A~Da~TG-e~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTM-----ATA--GDLVFYGTLDGYLKARDSDTG-DLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCE-----EET--TTEEEEECTTSEEEEEETTTC-CEEEEEEC
T ss_pred CEEEEEECCCCCEECCCCCCCCCCCCEE-----EEC--CCEEEEECCCCEEEEEECCCC-CEEEEEEC
T ss_conf 5389980788856233278888744146-----866--997999789995999999998-48369989
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=80.45 E-value=0.89 Score=17.71 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCEEEEE
Q ss_conf 99999997899299997788863159990
Q 000700 1236 PAKIVSASQAGDIQFLDIRNHKDAYLTID 1264 (1344)
Q Consensus 1236 g~~Lvsgs~DG~I~IWDl~~~~~~i~~l~ 1264 (1344)
+.+++.|+.||.++-+|.+++ +.+-+++
T Consensus 469 gglVF~G~~dg~l~A~Da~tG-e~LW~~~ 496 (560)
T d1kv9a2 469 GNLVFQGTAAGQMHAYSADKG-EALWQFE 496 (560)
T ss_dssp TTEEEEECTTSEEEEEETTTC-CEEEEEE
T ss_pred CCEEEEECCCCCEEEEECCCC-CEEEEEE
T ss_conf 998999778981999999998-5827998
|